Psyllid ID: psy11132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL
Secondary Structure (PSIPRED)
cEEEEEEcccEEEEccccEEEEccccEEEEEEEcccccccEEEEEEccEEccccccEEEEEEcccccEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEcccEEEEcccccccccccccEEEEEEcEEcccccEEEEEEccEEcccccccEEEEcccccEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEccccEEEEEEcccccccEEEEccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccEEEcccccEEEEcccEEEEEEEEEccccccEEEEEEccEEccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEcccEEEEEEEEcccccccEEEEEEccEEEcccccEEEEEEcccEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEccccccccccEcccccEEEEcccEEEEEEEEEcccccEEEEEEcc
Coil and Loop (DISEMBL)
mlvifstvppklsptnpertlnvgeRASLICSitkgdipltikwlkdgryldnsaalsITHVDQYNSMLVIDSvsarhsgnysctvrnmvaedTQVQRLIVnvppkiesfafpfdglpegartrvicgvthgdppltirwlkdgkplsprfpvnvsdldsfSSLLsinsvsaahsgeytcvasntaaqaryssklqvkgnlnrlppsytlVFSQASymstsyysfeqdswmidnenyvyctyl
Flexible Loop (DISEMBL)
mlvifstvppklsptnpertlnvgeRASLIcsitkgdipltikWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSfeqdswmidNENYVYCTYL
Low Complexity Region (SEG)
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPvnvsdldsfssllsinsvsAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL
Disordered region (IsUnstruct)
**********************VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTY*
Disordered Region (DISOPRED)
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP*DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS***********SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV**********YYSFEQDSWMIDNENYV*CT*L
Disordered Region (DISEMBL)
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL
Disordered Region (DISPRO)
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.753	0.088	0.438	3e-27
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.641	0.077	0.348	1e-16
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.641	0.077	0.342	2e-16
Q8VHZ8	2013	Down syndrome cell adhesi	no	N/A	0.641	0.077	0.342	2e-16
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.703	0.033	0.309	5e-15
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.736	0.035	0.338	7e-15
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.790	0.034	0.309	1e-14
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.728	0.005	0.301	6e-14
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.814	0.005	0.316	8e-14
B4KPU0	1045	Tyrosine-protein kinase-l	N/A	N/A	0.716	0.166	0.326	1e-13

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 109/196 (55%), Gaps = 13/196 (6%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
           P+ T   GE  +L C +    I   I W + GR L +     I    Q +  L I  V  
Sbjct: 527 PKVTAVSGETLNLKCPVAGYPIE-EIHWERGGRELPDD----IRQRVQPDGSLTISPVQK 581

Query: 77  R-HSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP 134
              SG Y+C  RN      +    + V VPP IE FAF  +GL EG RTR +CGV+ GDP
Sbjct: 582 NSDSGVYTCWARNKQGHSARRSGEVTVIVPPSIEPFAFQ-EGLAEGMRTRTVCGVSRGDP 640

Query: 135 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
           PL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGEYTCVA N AA+ +Y++ 
Sbjct: 641 PLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGEYTCVAKNPAAEIKYTAL 700

Query: 195 LQVKGNLNRLPPSYTL 210
           LQVK     +PP + +
Sbjct: 701 LQVK-----VPPRWIV 711

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 41  TIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSAR-HSGNYSCTVRNMVAEDT-Q 95
           +IKW K      NS  L   H     + N  L +  V      G Y+C V       T Q
Sbjct: 534 SIKWYK------NSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQ 587

Query: 96  VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 155
              + V VPP I+ F FP   +  G R  + C V  GD P+TI W KDG+P+     V +
Sbjct: 588 SVHVTVKVPPFIQPFEFPRFSI--GQRVFIPCVVVSGDLPITITWQKDGRPIPGSLGVTI 645

Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
            ++D F+S L I+++S  H+G YTC+A N AA   + S+L V     R+PP + +
Sbjct: 646 DNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIV-----RVPPKFVV 694

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 41  TIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSAR-HSGNYSCTVRNMVAEDT-Q 95
           +IKW K      N+  L   H     + N  L +  V      G Y+C V       T Q
Sbjct: 534 SIKWYK------NANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQ 587

Query: 96  VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 155
              + V VPP I+ F FP   +  G R  + C V  GD P+TI W KDG+P+     V +
Sbjct: 588 SVHVTVKVPPFIQPFEFPRFSI--GQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTI 645

Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
            ++D F+S L I+++S  H+G YTC+A N AA   + S+L V     R+PP + +
Sbjct: 646 DNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIV-----RVPPKFVV 694

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 41  TIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSAR-HSGNYSCTVRNMVAEDT-Q 95
           +IKW K      N+  L   H     + N  L +  V      G Y+C V       T Q
Sbjct: 534 SIKWYK------NANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQ 587

Query: 96  VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 155
              + V VPP I+ F FP   +  G R  + C V  GD P+TI W KDG+P+     V +
Sbjct: 588 SVHVTVKVPPFIQPFEFPRFSI--GQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTI 645

Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
            ++D F+S L I+++S  H+G YTC+A N AA   + S+L V     R+PP + +
Sbjct: 646 DNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIV-----RVPPKFVV 694

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 20   TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
            T+  G   SL C       P  I W KDG+ L    A  + HV     +L +        
Sbjct: 2173 TVREGHPTSLSCECRGVPFP-KISWRKDGQPLPGEGA-GLQHVSAVGRLLYLGQAQLAQE 2230

Query: 80   GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP---FDGLPEGARTRVICGVTHGDPPL 136
            G Y+C   N+V   +Q  +L V+VPP+I     P      + +G  T + C  T G PP 
Sbjct: 2231 GTYTCECSNVVGNSSQDLQLEVHVPPQIAGPREPPTQVSVVQDGVAT-LECNAT-GKPPP 2288

Query: 137  TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196
            T+ W +DG+P+     +    L +    L +    AAH+G Y+CVA N A +A    +L 
Sbjct: 2289 TVTWERDGQPVGAELGLQ---LQNQGQSLHVERAQAAHTGRYSCVAENLAGRAERKFELS 2345

Query: 197  V 197
            V
Sbjct: 2346 V 2346

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 2    LVIFSTVPPKLSPTNPERTLNVGERAS--LICSITKGDIPLTIKWLKDGRYLDNSAALSI 59
             V+   VPP++  +   +  NV E+    L C   +G  P  I WLKDG  LD       
Sbjct: 3242 FVVSVLVPPQIQDSGMAQEHNVLEKQEIRLHCE-AEGQPPPDITWLKDGGLLDQHVG--- 3297

Query: 60   THVDQY--NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL 117
             H+  Y   S LV+  +    SG Y+C   N   ED ++  + V VPP I+  A     L
Sbjct: 3298 PHLRFYLDGSTLVLKGLRTADSGAYTCVAHNPAGEDARLHTVNVLVPPTIKQQAGDTGTL 3357

Query: 118  PE--GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAH 174
                G    ++C V  G PP+ + WLKDG PL    P++    L S    L I+ V  A 
Sbjct: 3358 VSRTGELVTMVCPV-QGSPPIHVSWLKDGLPL----PLSQRTLLHSSGRTLRISQVQLAD 3412

Query: 175  SGEYTCVASNTAAQA 189
            SG +TCVA++ A  A
Sbjct: 3413 SGVFTCVAASPAGVA 3427

Mus musculus (taxid: 10090)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 28/220 (12%)

Query: 8    VPPKLSPTNPERTL---NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
            VPP +    PER +    +    +L C  T G  P TI WLK+ + ++NS +L +  +  
Sbjct: 3149 VPPSIE--GPEREVIVETISNPVTLTCDAT-GIPPPTIAWLKNHKRIENSDSLEV-RILS 3204

Query: 65   YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGART 123
              S L I       SGNY+C   NM  +  +   L + VPP +     P D  +  G   
Sbjct: 3205 GGSKLQIARSQHSDSGNYTCIASNMEGKAQKYYFLSIQVPPSVAGAEIPSDVSVLLGENV 3264

Query: 124  RVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             ++C   +G P   I+WLKDGKP++       R   N S L+ + +L S        +G+
Sbjct: 3265 ELVCNA-NGIPTPLIQWLKDGKPIASGETERIRVSANGSTLNIYGALTS-------DTGK 3316

Query: 178  YTCVASNTAAQARYSSKLQV------KGNLNRLPPSYTLV 211
            YTCVA+N A +      L V      +GN +      TLV
Sbjct: 3317 YTCVATNPAGEEDRIFNLNVYVTPTIRGNKDEAEKLMTLV 3356

Homo sapiens (taxid: 9606)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 9/186 (4%)

Query: 24   GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
            GE A   C +T G  P+ I W KD + +      +IT V     + ++  V    SG Y+
Sbjct: 7212 GESADFECHVT-GAQPMRITWSKDNKEIRPGGNYTITCVGNTPHLRIL-KVGKGDSGQYT 7269

Query: 84   CTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 143
            C   N V +D    +L V  PPK            +G   ++ C ++ G P + + W ++
Sbjct: 7270 CQATNDVGKDMCSAQLSVKEPPKFVKKLEASKVAKQGESIQLECKIS-GSPEIKVSWFRN 7328

Query: 144  GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR 203
               L   +  N+S ++S + LL+IN  SA  SG+Y C A N    A  S+ L VK     
Sbjct: 7329 DSELHESWKYNMSFINSVA-LLTINEASAEDSGDYICEAHNGVGDASCSTALTVKA---- 7383

Query: 204  LPPSYT 209
             PP +T
Sbjct: 7384 -PPVFT 7388

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 91/212 (42%), Gaps = 14/212 (6%)

Query: 15   TNPERTLN--VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
            T P R ++  VG    L C I  G +P+ + W KDG+ L  S    I  V+   S L I 
Sbjct: 5004 TKPLRNVDSVVGGACRLDCKIA-GSLPMRVSWFKDGKELTASDRYQIAFVEGTAS-LEIS 5061

Query: 73   SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC--GVT 130
             V    +GN++C   N V        LIV  PP   +     D LP  A    +C     
Sbjct: 5062 RVDMNDAGNFTCRATNSVGSKDSSGALIVQEPPSFVTKPGSRDVLPGSA----VCLKSAF 5117

Query: 131  HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
             G  PLTI+W K  K L       ++   S SSL  + +V  + SG YTC  SN A    
Sbjct: 5118 QGSAPLTIKWFKGDKELVSGGSCYITKETSESSL-ELYAVKTSDSGTYTCKVSNVAGSVE 5176

Query: 191  YSSKLQVKGN---LNRLPPSYTLVFSQASYMS 219
             S+ L VK     + +L PS  L     + ++
Sbjct: 5177 CSADLFVKEPATFIEKLEPSQLLKKGDGTQLA 5208

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B4KPU0|PTK7_DROMO Tyrosine-protein kinase-like otk OS=Drosophila mojavensis GN=otk PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 88/199 (44%), Gaps = 25/199 (12%)

Query: 11  KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THVDQYNSML 69
           K  P    + L +G    L C       P  ++WL+D      +A  S+  HVD  N  L
Sbjct: 386 KFMPQPTSKNLELGALGKLHCKAQGTPTP-QVQWLRD------AANGSLPEHVDDINGTL 438

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
           +  +VSA H GNY+C   N   +      + V V P+   F+   +G  E +   V   V
Sbjct: 439 IFRNVSAEHRGNYTCVASNSQGQINATVAINVVVAPR---FSVAPEGPIESSEQGV--AV 493

Query: 130 TH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAAHSGEYTCV 181
            H    GDP  TI+W KD K LS     N +D   FS L    L I +V A   G+Y C 
Sbjct: 494 IHCQAIGDPKPTIQWDKDLKYLSE----NNTDRQRFSFLENGTLEIRNVQAEDEGKYGCT 549

Query: 182 ASNTAAQARYSSKLQVKGN 200
             N+A   R   +L V+GN
Sbjct: 550 IGNSAGLKREEVRLLVRGN 568

Acts as a calcium-dependent, homophilic cell adhesion molecule that regulates neural recognition during the development of the nervous system. Component of the repulsive Plexin signaling response to regulate motor axon guidance at the embryonic stage. Also component of a receptor complex that is required in the adult visual system to innervate the lamina layer; specific targeting of R1-R6 axons.

Drosophila mojavensis (taxid: 7230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
332028703	1703	Down syndrome cell adhesion molecule-lik	0.790	0.112	0.575	2e-60
322800338	1441	hypothetical protein SINV_02508 [Solenop	0.790	0.133	0.575	2e-60
307201299	2051	Down syndrome cell adhesion molecule [Ha	0.810	0.096	0.552	1e-59
270004557	1892	hypothetical protein TcasGA2_TC003918 [T	0.810	0.104	0.571	4e-57
170041655	1601	down syndrome cell adhesion molecule [Cu	0.765	0.116	0.549	3e-55
195588390	2851	GD13085 [Drosophila simulans] gi|1941959	0.810	0.069	0.568	2e-53
194747233	1870	GF24786 [Drosophila ananassae] gi|190623	0.810	0.105	0.563	2e-53
195017504	1893	GH14935 [Drosophila grimshawi] gi|193898	0.810	0.104	0.563	7e-53
198465008	1971	GA16861 [Drosophila pseudoobscura pseudo	0.810	0.099	0.563	9e-53
195129293	2101	GI11453 [Drosophila mojavensis] gi|19392	0.810	0.093	0.563	2e-52

>gi|332028703|gb|EGI68735.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 151/198 (76%), Gaps = 6/198 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           VPPK+SP   +R L++GER +L CS+T+GD+PL+I WLKDGR +  S  +++T++DQYNS
Sbjct: 330 VPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSITWLKDGRSMGPSERVTVTNMDQYNS 389

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
           +L+I+S+S  H+GNYSC  RN+ AE +  QRL+V+VPP IE F F  +GL EG RTR +C
Sbjct: 390 ILMIESLSPDHNGNYSCVARNVAAEVSHTQRLVVHVPPIIEPFTFQ-EGLSEGMRTRTVC 448

Query: 128 GVTHGDPPLTIRWLKDGK---PLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
           GV  GDPPLTI WLKDG+   PL P      NVS LD +SSLLSI +++A HSG+YTCVA
Sbjct: 449 GVAAGDPPLTISWLKDGQSPFPLPPNLASVANVSQLDPYSSLLSITNLAAEHSGDYTCVA 508

Query: 183 SNTAAQARYSSKLQVKGN 200
           +N AA+ RY++KLQVKG+
Sbjct: 509 ANPAAEVRYTAKLQVKGS 526

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800338|gb|EFZ21342.1| hypothetical protein SINV_02508 [Solenopsis invicta]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 152/198 (76%), Gaps = 6/198 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           VPPK+SP   +R L++GER +L CS+T+GD+PL+I WLKDGR +  S  +++T++DQYNS
Sbjct: 231 VPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSITWLKDGRSVGPSERVTVTNMDQYNS 290

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
           +L+I+S+S  H+GNYSC  RN+ AE + +QRL+V+VPP IE F F  +GL EG RTR +C
Sbjct: 291 ILMIESLSPDHNGNYSCVARNVAAEVSHMQRLVVHVPPIIEPFTFQ-EGLSEGMRTRTVC 349

Query: 128 GVTHGDPPLTIRWLKDGK---PLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
           GV  GDPPLTI WLKDG+   PL P      NVS LD +SSLLSI +++A HSG+YTCVA
Sbjct: 350 GVAAGDPPLTISWLKDGQSPFPLPPNLASVANVSQLDPYSSLLSITNLAAEHSGDYTCVA 409

Query: 183 SNTAAQARYSSKLQVKGN 200
           +N AA+ RY++KLQVKG+
Sbjct: 410 ANPAAEVRYTAKLQVKGS 427

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201299|gb|EFN81146.1| Down syndrome cell adhesion molecule [Harpegnathos saltator]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/208 (55%), Positives = 154/208 (74%), Gaps = 11/208 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           VPPK+SP   +R L++GER +L CS+T+GD+PL+I WLKDGR +  S  +++T++DQYNS
Sbjct: 587 VPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSITWLKDGRSMGPSERVTVTNMDQYNS 646

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
           +L+I+S+S  H+GNYSC  RN+ AE +  QRL+V+VPP IE F F  +GL EG RTR +C
Sbjct: 647 ILMIESLSPDHNGNYSCVARNVAAEVSHTQRLVVHVPPIIEPFTFQ-EGLSEGMRTRTVC 705

Query: 128 GVTHGDPPLTIRWLKDGK---PLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
           GV  GDPPLTI WLKDG+   PL P      NVS LD +SSLLSI +++A HSG+YTCVA
Sbjct: 706 GVAAGDPPLTISWLKDGQSPFPLPPNLASVANVSQLDPYSSLLSITNLAAEHSGDYTCVA 765

Query: 183 SNTAAQARYSSKLQVKGNLNRLPPSYTL 210
           +N AA+ RY++KLQVK     +PP + +
Sbjct: 766 ANPAAEVRYTAKLQVK-----VPPRWIV 788

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004557|gb|EFA01005.1| hypothetical protein TcasGA2_TC003918 [Tribolium castaneum]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 6/203 (2%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           VPPK+SP   E TL++G+RASL CS+TKGD+PLTI W K+GR ++ +  +SIT VDQ+ S
Sbjct: 632 VPPKVSPFYVEDTLHMGDRASLTCSVTKGDLPLTITWRKNGRTVEPAHMVSITQVDQFTS 691

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
           +LVI+ +S+ H+GNYSC VRN+ AE +   +L+VNVPP IE F+F  DGL EG RTR +C
Sbjct: 692 ILVIEKLSSDHNGNYSCVVRNLAAEVSHTHQLVVNVPPIIEPFSFQ-DGLSEGMRTRTVC 750

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
           GV+ GDPPL + WLKDG+ L+P   VNVS LD +SSLLSI+S+ + HSG++TCVASN AA
Sbjct: 751 GVSSGDPPLVVSWLKDGQALTPALGVNVSALDPYSSLLSISSLDSRHSGDFTCVASNPAA 810

Query: 188 QARYSSKLQVKGNLNRLPPSYTL 210
           + RY++KLQVK     +PP + +
Sbjct: 811 EVRYTAKLQVK-----VPPRWEV 828

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041655|ref|XP_001848570.1| down syndrome cell adhesion molecule [Culex quinquefasciatus] gi|167865230|gb|EDS28613.1| down syndrome cell adhesion molecule [Culex quinquefasciatus]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 146/204 (71%), Gaps = 18/204 (8%)

Query: 8   VPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPPKL+P +    +LNVG+RAS+ CS+ KGDIPLTI W KDGR +D S  +S+T VDQYN
Sbjct: 169 VPPKLNPFHSATLSLNVGDRASITCSVIKGDIPLTINWKKDGRPIDPSQRMSVTQVDQYN 228

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           S+LVI+++SA H+GNYSC VRN  +E    Q L+VN            DGL EG RTR +
Sbjct: 229 SILVIENLSADHTGNYSCVVRNSASETEDSQALLVN------------DGLAEGMRTRTV 276

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GD PL+++WLKDG+PLS     NVS LD +SSLL+I S+SAAHSG+YTCVASN A
Sbjct: 277 CGVSKGDAPLSLKWLKDGEPLSSLLGANVSTLDQYSSLLNIPSLSAAHSGDYTCVASNPA 336

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ ++++ LQVK     +PP + +
Sbjct: 337 AEVKFTASLQVK-----VPPRWIV 355

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588390|ref|XP_002083941.1| GD13085 [Drosophila simulans] gi|194195950|gb|EDX09526.1| GD13085 [Drosophila simulans]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 145/204 (71%), Gaps = 7/204 (3%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPPKLSP       LN+G+RASL CS+ KGD+PLTI W KDGR +D +  +S+  VDQYN
Sbjct: 610 VPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 669

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           S+LVI+++ + H+GNYSC VRN  AE    Q L+VNVPP IE FAF  +GL EG RTR +
Sbjct: 670 SILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPSIEPFAFQ-EGLAEGMRTRTV 728

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GDPPL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGEYTCVA N A
Sbjct: 729 CGVSRGDPPLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGEYTCVAKNPA 788

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ +Y++ LQVK     +PP + +
Sbjct: 789 AEIKYTALLQVK-----VPPRWIV 807

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747233|ref|XP_001956057.1| GF24786 [Drosophila ananassae] gi|190623339|gb|EDV38863.1| GF24786 [Drosophila ananassae]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 146/204 (71%), Gaps = 7/204 (3%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPPK+SP       LN+G+RASL CS+ KGD+PLTI W KDGR +D +  +S+  VDQYN
Sbjct: 576 VPPKVSPFQTSILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 635

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           S+LVI+++ + H+GNYSC VRN  AE    Q L+VNVPP IE FAF  +GL EG RTR +
Sbjct: 636 SILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPSIEPFAFQ-EGLAEGMRTRTV 694

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GDPPL + WLKDG+PL      NV+ LD +SSLLSI S+SA HSGEYTCVA N A
Sbjct: 695 CGVSRGDPPLKLIWLKDGEPLPDLLGANVTMLDQYSSLLSIPSLSATHSGEYTCVAKNPA 754

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ +Y++ LQVK     +PP + +
Sbjct: 755 AEIKYTALLQVK-----VPPRWIV 773

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195017504|ref|XP_001984609.1| GH14935 [Drosophila grimshawi] gi|193898091|gb|EDV96957.1| GH14935 [Drosophila grimshawi]

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 144/204 (70%), Gaps = 7/204 (3%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPP+LSP       LN+G+RASL CS+ KGD+PLTI W KDGR +D +  +S+  VDQYN
Sbjct: 576 VPPRLSPFQTSILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 635

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
            +LVID++ + H+GNYSC VRN  AE    Q L+VNVPP IE FAF  DGL EG RTR +
Sbjct: 636 KILVIDNLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPIIEPFAFQ-DGLAEGMRTRTV 694

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GD PL + WLKDG+PL      NV+ LD +SSLLSI S+SA HSGEYTCVA N A
Sbjct: 695 CGVSRGDAPLKLIWLKDGEPLPDLLGANVTMLDQYSSLLSIPSLSATHSGEYTCVAKNPA 754

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ +Y++ LQVK     +PP + +
Sbjct: 755 AEIKYTALLQVK-----VPPRWIV 773

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198465008|ref|XP_001353455.2| GA16861 [Drosophila pseudoobscura pseudoobscura] gi|198149975|gb|EAL30964.3| GA16861 [Drosophila pseudoobscura pseudoobscura]

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 145/204 (71%), Gaps = 7/204 (3%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPPKLSP       LN+G+RASL CS+ KGD+PLTI W KDGR +D +  +S+  VDQYN
Sbjct: 576 VPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 635

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           S+LVI+++ + H+GNYSC VRN  AE    Q L+VNVPP IE FAF  +GL EG RTR +
Sbjct: 636 SILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPSIEPFAFQ-EGLAEGMRTRTV 694

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GD PL + WLKDG+PL      NV+ LD +SSLLSI S+SA HSGEYTCVA N A
Sbjct: 695 CGVSRGDAPLKLIWLKDGEPLPDLLGANVTMLDQYSSLLSIPSLSATHSGEYTCVAKNPA 754

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ +Y++ LQVK     +PP + +
Sbjct: 755 AEIKYTALLQVK-----VPPRWIV 773

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129293|ref|XP_002009090.1| GI11453 [Drosophila mojavensis] gi|193920699|gb|EDW19566.1| GI11453 [Drosophila mojavensis]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 145/204 (71%), Gaps = 7/204 (3%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           VPP+LSP       LN+G+RASL CS+ KGD+PLTI W KDGR +D +  +S+  VDQYN
Sbjct: 576 VPPRLSPFQTSILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 635

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           S+LVID + + H+GNYSC VRN  AE    Q L+VNVPP IE FAF  DGL EG RTR +
Sbjct: 636 SILVIDHLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPIIEPFAFQ-DGLAEGMRTRTV 694

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           CGV+ GD PL + WLKDG+PL      N++ LD +SSLLSI S+SA+HSGEYTCVA N A
Sbjct: 695 CGVSRGDAPLKLIWLKDGEPLPELLGANITMLDQYSSLLSIPSLSASHSGEYTCVAKNPA 754

Query: 187 AQARYSSKLQVKGNLNRLPPSYTL 210
           A+ +Y++ LQVK     +PP + +
Sbjct: 755 AEIKYTALLQVK-----VPPRWIV 773

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.761	0.090	0.322	9.8e-18
UNIPROTKB|E1B9K4	5073	E1B9K4 "Uncharacterized protei	0.736	0.035	0.339	4.9e-16
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.765	0.092	0.331	4.9e-16
UNIPROTKB|F1SGT7	1656	F1SGT7 "Uncharacterized protei	0.765	0.112	0.331	6.4e-16
UNIPROTKB|F1MKB9	1859	DSCAM "Uncharacterized protein	0.765	0.100	0.331	7.3e-16
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.765	0.092	0.331	8e-16
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.765	0.092	0.331	8e-16
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.765	0.093	0.326	2.1e-15
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.543	0.068	0.350	6.9e-15
ZFIN|ZDB-GENE-041014-322	5616	hmcn1 "hemicentin 1" [Danio re	0.728	0.031	0.289	2.9e-14

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
 Identities = 62/192 (32%), Positives = 87/192 (45%)

Query:     9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
             PP +    P + +  GE   + C      +   I+W K  + L  S    +  V      
Sbjct:   539 PPYVRAIGPIKAV-AGEDIIVHCPFAGYPVE-QIRWEKAHQELTTSNHYELASVAD-GGQ 595

Query:    69 LVIDSVS-ARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVI 126
             LVI +V   R  G Y+C VR+   E+ +   +L VN PP IE F FP   L EG R ++ 
Sbjct:   596 LVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFP-KNLQEGGRAQIT 654

Query:   127 CGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTA 186
             C V+ GD P+   W KD   + P                      A HSG+YTC ASN A
Sbjct:   655 CAVSSGDMPIYFSWKKDDSSI-PSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAA 713

Query:   187 AQARYSSKLQVK 198
             A+  Y+++LQV+
Sbjct:   714 AKVNYTAELQVR 725

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

UNIPROTKB|E1B9K4 E1B9K4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
 Identities = 69/203 (33%), Positives = 89/203 (43%)

Query:     6 STVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
             +TV P++  S T  E ++  G+   L C +  G  P  + WLKDG  LD S    +    
Sbjct:  3217 ATVAPRIQSSGTTQEHSVLEGQDVQLDCEVD-GQPPPYVVWLKDGSPLDESVGPYLWFYL 3275

Query:    64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGART 123
                S LV+  + A  SG Y+C  RN   ED ++  + V VPP IE       G PEGA T
Sbjct:  3276 N-GSSLVLKDLRASDSGAYTCVARNAAGEDAKLYTVNVLVPPTIEQ------G-PEGAGT 3327

Query:   124 RV---------ICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAH 174
              V          C V  G PP+ + WLKDG PL P                       A 
Sbjct:  3328 LVHRLGDLVSMACPV-RGSPPIHVSWLKDGLPL-PL--SHRTHLHSSGRTLRISQVQLAD 3383

Query:   175 SGEYTCVASNTAAQARYSSKLQV 197
             SG +TCVA++ A  A     LQV
Sbjct:  3384 SGTFTCVAASPAGVANRHFILQV 3406

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 65/196 (33%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   595 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPGSLGVTIDNID-FTS 652

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPPK        DG+  G    + C
Sbjct:   653 SLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGI-YGKAVILNC 711

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   712 SA-EGYPVPTIVW-KFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS 769

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   770 NDVGADVSKSMYLTVK 785

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1SGT7 F1SGT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 6.4e-16, P = 6.4e-16
 Identities = 65/196 (33%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   347 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNID-FTS 404

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPPK        DG+  G    + C
Sbjct:   405 SLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGI-YGKAVILNC 463

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   464 SA-EGYPVPTIVW-KFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS 521

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   522 NDVGADVSKSMYLTVK 537

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MKB9 DSCAM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 7.3e-16, P = 7.3e-16
 Identities = 65/196 (33%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   431 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNID-FTS 488

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPPK        DG+  G    + C
Sbjct:   489 SLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGI-YGKAVILNC 547

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   548 SA-EGYPVPTIVW-KFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS 605

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   606 NDVGADVSKSMYLTVK 621

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 65/196 (33%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   595 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNID-FTS 652

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPPK        DG+  G    + C
Sbjct:   653 SLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGI-YGKAVILNC 711

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   712 SA-EGYPVPTIVW-KFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS 769

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   770 NDVGADVSKSMYLTVK 785

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 65/196 (33%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   595 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNID-FTS 652

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPPK        DG+  G    + C
Sbjct:   653 SLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGI-YGKAVILNC 711

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   712 SA-EGYPVPTIVW-KFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS 769

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   770 NDVGADVSKSMYLTVK 785

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 64/196 (32%), Positives = 87/196 (44%)

Query:     8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             VPP + P    R  ++G+R  + C +  GD+P+TI W KDGR +  S  ++I ++D + S
Sbjct:   581 VPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNID-FTS 638

Query:    68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
              L I ++S  H+GNY+C  RN  A      +LIV VPP+        DG+  G    + C
Sbjct:   639 SLRISNLSLMHNGNYTCIARNDAAAVEHQSQLIVRVPPRFVVQPSDQDGI-YGKAVILNC 697

Query:   128 GVTHGDPPLTIRWLKDGKPLS-PRF-PXXXXXXXXXXXXXXXXXXXAAH--SGEYTCVAS 183
                 G P  TI W K  K    P+F P                        SG Y C  S
Sbjct:   698 SA-EGYPVPTIVW-KYSKGAGVPQFQPIALNGRIQLLTNGSLLIKHVLEEDSGYYLCKVS 755

Query:   184 N-TAAQARYSSKLQVK 198
             N   A    S  L VK
Sbjct:   756 NDVGADVSKSMYLTVK 771

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 48/137 (35%), Positives = 73/137 (53%)

Query:     8 VPPKLSPTNP-ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             VPPK+ P       L  G RA++ C I +GD+P++ +W ++G+ L  +       +D+Y+
Sbjct:   609 VPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYS 668

Query:    67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE-GARTRV 125
             + LVI+ +S+ HSGNY+C   N+   +     L VNVPPK      P D   + GA   +
Sbjct:   669 ASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKW--ILEPKDSSAQAGADVLL 726

Query:   126 ICGVTHGDPPLTIRWLK 142
              C  + G P  TI W K
Sbjct:   727 HCQ-SSGYPTPTITWKK 742

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

ZFIN|ZDB-GENE-041014-322 hmcn1 "hemicentin 1" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 53/183 (28%), Positives = 83/183 (45%)

Query:     8 VPPKLSPTNPERTLN-VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             VPP+L     ER +  +    +  C  T G  P ++ WLK+GR ++NS +L + H+    
Sbjct:  3135 VPPRLDGPAEERVVETISNPVTFACDAT-GIPPPSLTWLKNGRVIENSESLEM-HILSGG 3192

Query:    67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
             S L I       SG Y+C   N+  +  +   L+++VPP I     P +  +      ++
Sbjct:  3193 SKLQISRSQLSDSGTYTCVASNVEGKAQKNYHLVIHVPPNIIGSELPSEMSVLLNDSVQL 3252

Query:   126 ICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNT 185
             +C    G P   I+WLKDG  +S R                      + SG+YTCVA+N 
Sbjct:  3253 VCRA-EGTPTPEIQWLKDGMTIS-RTAQKNIKISPDGSTLTVTAVHTSDSGKYTCVATNQ 3310

Query:   186 AAQ 188
             A +
Sbjct:  3311 AGE 3313

GO:0005509 "calcium ion binding" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	243
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-11
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-09
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	4e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-08
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-07
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	4e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	3e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	6e-06
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	9e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	3e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-05
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	3e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	7e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	8e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	1e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	4e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	4e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	5e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	5e-04
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	5e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	7e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	7e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.001
cd05895	76	cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-	0.001
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.002
cd05862	86	cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like	0.002
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	0.002
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	0.002
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.003
cd05742	84	cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)	0.003
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.003
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	0.003
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	0.004
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG   R  C VT GDP  T+ W KDG+PL       V+      +L +I++V     G+Y
Sbjct: 14  EGESARFTCTVT-GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL-TISNVQPDDEGKY 71

Query: 179 TCVASNTAAQARYSSKLQV 197
           TCVA+N+A +A  S++L V
Sbjct: 72  TCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 5   FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
           F+  P  +        +  GE A   C++T GD   T+ W KDG+ L +S    +T+   
Sbjct: 3   FTQKPKDV-------EVQEGESARFTCTVT-GDPDPTVSWFKDGQPLRSSDRFKVTYEG- 53

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
               L I +V     G Y+C   N   E      L V
Sbjct: 54  GTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG    + C    G+P   I WLKDGKPL        S      S L+I SVS   SG Y
Sbjct: 1   EGQSVTLTCPAE-GNPVPNITWLKDGKPLPESNRFVASG-----STLTIKSVSLEDSGLY 54

Query: 179 TCVASN 184
           TCVA N
Sbjct: 55  TCVAEN 60

Length = 63

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           +P G+  R+ C  + G+P  TI WLKDGKP      +    +      L + SV  + SG
Sbjct: 6   VPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64

Query: 177 EYTCVASNTAAQARYSSKLQV 197
           +YTC+  N      ++ K+ V
Sbjct: 65  KYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTC 180
            + C  + G PP TI WLK+GKPL       V         SS L+I++V+   SG YTC
Sbjct: 2   TLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 181 VASNTA 186
           VASN+A
Sbjct: 61  VASNSA 66

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 51.6 bits (123), Expect = 4e-09
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 9  PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P ++  +P  ++  G   +L CS   G  P TI W ++G     S  L         S 
Sbjct: 1  KPVIT-VSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLG-----SSGST 54

Query: 69 LVIDSVSARHSGNYSCTVRN 88
          L + SV++  SG Y+C   N
Sbjct: 55 LTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
           EG    + C  + G PP  + W K G  L   S RF V+ S   S    L+I++V+   S
Sbjct: 8   EGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST---LTISNVTPEDS 63

Query: 176 GEYTCVASNTAAQARYSSKLQV 197
           G YTC A+N++  A   + L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITHVDQYNSMLVIDSVS 75
           P  T+  GE  +L C  + G  P  + W K G + L  S   S++      S L I +V+
Sbjct: 2   PSVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSR-SGSTSTLTISNVT 59

Query: 76  ARHSGNYSCTVRNMVAEDTQVQRLIV 101
              SG Y+C   N     +    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
           EG    + C  + G PP  + W K G  L   S RF V+ S   S    L+I++V+   S
Sbjct: 8   EGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST---LTISNVTPEDS 63

Query: 176 GEYTCVASNTAAQARYSSKLQV 197
           G YTC A+N++  A   + L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITHVDQYNSMLVIDSVS 75
           P  T+  GE  +L C  + G  P  + W K G + L  S   S++      S L I +V+
Sbjct: 2   PSVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSR-SGSTSTLTISNVT 59

Query: 76  ARHSGNYSCTVRNMVAEDTQVQRLIV 101
              SG Y+C   N     +    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 27 ASLICSITKGDIPLTIKWLKDGRYLDNS---AALSITHVDQYNSMLVIDSVSARHSGNYS 83
           +L C  + G  P TI WLK+G+ L +S      S       +S L I +V+   SG Y+
Sbjct: 1  VTLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 84 CTVRNMVAEDTQ 95
          C   N     + 
Sbjct: 60 CVASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
            + C    G PP TI W ++G             L S  S L+++SV++  SG YTCVAS
Sbjct: 19  TLTCSAEGGPPPPTISWYRNGSISG-----GSGGLGSSGSTLTLSSVTSEDSGTYTCVAS 73

Query: 184 N 184
           N
Sbjct: 74  N 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
          G+  +L C    G+    I WLKDG+ L  S            S L I SVS   SG Y+
Sbjct: 2  GQSVTLTCPAE-GNPVPNITWLKDGKPLPESNRFV-----ASGSTLTIKSVSLEDSGLYT 55

Query: 84 CTVRN 88
          C   N
Sbjct: 56 CVAEN 60

Length = 63

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASN 184
           C  T   P L  +W KDGK L+ +       +     +S L IN    A SGEYTCV  N
Sbjct: 5   CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           G P   I W+K G  L           ++F+  L I++VS    GEY C ASN+   AR+
Sbjct: 9   GLPTPEISWIKIGGELPADRTK----FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64

Query: 192 SSKLQVK 198
           +  + V+
Sbjct: 65  TISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           VGE A L CS  +G    T+ W KDG+ L N     +  VD  N  L+I        G Y
Sbjct: 10  VGEMAVLECSPPRGHPEPTVSWRKDGQPL-NLDNERVRIVDDGN--LLIAEARKSDEGTY 66

Query: 83  SCTVRNMVAE-DTQVQRLIV 101
            C   NMV E ++   RL V
Sbjct: 67  KCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
           P G+  R+ C V  G+P   I WLKD KPL+P     + +       LS+ ++    SG+
Sbjct: 7   PVGSSVRLKC-VASGNPRPDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSGK 62

Query: 178 YTCVASNTAAQARYSSKLQV 197
           YTC  SN A +   + K+ V
Sbjct: 63  YTCHVSNRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           G P  T+ W KDGKPL     V +    S +S L I +   + SG+YT    N A +   
Sbjct: 10  GRPTPTVTWSKDGKPLKLSGRVQIETTASSTS-LVIKNAERSDSGKYTLTLKNPAGEK-- 66

Query: 192 SSKLQVK 198
           S+ + VK
Sbjct: 67  SATINVK 73

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G+   + C V  G P + + W K+GK L     V   +    S  L+I++V+   SG YT
Sbjct: 1   GSSVTLTCSV-SGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 180 CVA 182
           CV 
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           GDP  T+ W K+   L P+    + D  S    L I +V+A   G YTC A N   +   
Sbjct: 9   GDPVPTVLWRKEDGEL-PKGRAEILDDKS----LKIRNVTAGDEGSYTCEAENMVGKIEA 63

Query: 192 SSKLQV 197
           S+ L V
Sbjct: 64  SASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 14/80 (17%)

Query: 9  PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P L+P+     +  GE  +L CS   G+ P    W KDG             +    + 
Sbjct: 1  KPVLTPSPT--VVFEGEDVTLTCSAP-GNPPPNYTWYKDG-----------VPLSSSQNG 46

Query: 69 LVIDSVSARHSGNYSCTVRN 88
              +VSA  SG Y+C   N
Sbjct: 47 FFTPNVSAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
           P     +  C    G+P  T+RWLK+GK       +    + +    L + SV  +  G 
Sbjct: 7   PAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 65

Query: 178 YTCVASNTAAQARYSSKLQV 197
           YTCV  N      ++  L V
Sbjct: 66  YTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 134 PPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
           PP  IRWLKD + L            NV +   + S L +       SG YT +A N  A
Sbjct: 31  PPPQIRWLKDNRTLIENLTEITTSEHNVQET-RYVSKLKLIRAKEEDSGLYTALAQNEDA 89

Query: 188 QARYSSKLQVK 198
              Y+  LQ++
Sbjct: 90  VKSYTFALQIQ 100

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
          G   +L CS++ G   + + W K+G+ L+ S  +        +  L I +V+   SG Y+
Sbjct: 1  GSSVTLTCSVS-GPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 84 CTV 86
          C V
Sbjct: 60 CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           + EG    + C    G+PP    W KDG PLS              +     +VSA  SG
Sbjct: 11  VFEGEDVTLTC-SAPGNPPPNYTWYKDGVPLSSS-----------QNGFFTPNVSAEDSG 58

Query: 177 EYTCVASNTAAQARYSSKLQVK 198
            YTCVASN     + S+ + + 
Sbjct: 59  TYTCVASNGGGG-KTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           G P   + WLK+G  ++P+    +  L +  S L I++V    +G YTC+A N A     
Sbjct: 9   GIPLPRLTWLKNGMDITPKLSKQL-TLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED 67

Query: 192 SSKLQVK 198
            S L V+
Sbjct: 68  ISSLFVE 74

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 36 GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
          G+   TI WLKDG+       +    V +    L+++SV    SG Y+C V N
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 28 SLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV--DQYNSMLVIDSVSARHSGNYSCT 85
           L C  T     L  KW KDG+ L+         +   + NS L I+      SG Y+C 
Sbjct: 2  VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCV 61

Query: 86 VRNMVAEDT 94
          V N++  DT
Sbjct: 62 VENILGNDT 70

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           G+P    RWLK+G+PL+    + V   D     L I  +S + SG Y CVA N       
Sbjct: 25  GNPRPAYRWLKNGQPLASENRIEVEAGD-----LRITKLSLSDSGMYQCVAENKHGTIYA 79

Query: 192 SSKLQV 197
           S++L V
Sbjct: 80  SAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 134 PPLTIRWLKDGKPL--SPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
           PP  I W  D + L       V   +     + S L +  +  + +G YT +ASN+ A  
Sbjct: 32  PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91

Query: 190 RYSSKLQVK 198
             + +L V 
Sbjct: 92  SLTFELYVN 100

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 41  TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100
           T+ W KDG+ L  S  + I      ++ LVI +     SG Y+ T++N   E +      
Sbjct: 15  TVTWSKDGKPLKLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKS----AT 69

Query: 101 VNV 103
           +NV
Sbjct: 70  INV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           +  GA    IC      P  T+ W + G  L    P    D   F+ +L+I +V  + +G
Sbjct: 13  VRPGADVSFICRAKSKSPAYTLVWTRVGGGL----PSRAMD---FNGILTIRNVQLSDAG 65

Query: 177 EYTCVASN 184
            Y C  SN
Sbjct: 66  TYVCTGSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             ++C  + G+P   I W KD  P+       +  L S    L I +   +  G+Y CVA
Sbjct: 1   ATMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQLRS--GALQIENSEESDQGKYECVA 57

Query: 183 SNTAAQARYSSKLQV 197
           +N+A   RYS+   +
Sbjct: 58  TNSAG-TRYSAPANL 71

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           EG   R  C V  G+P  T+ W+++G+ +  S R  +  ++   + S   I+ V  +  G
Sbjct: 17  EGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITSTE---YKSTFEISKVQMSDEG 72

Query: 177 EYTCVASNT 185
            YT V  N+
Sbjct: 73  NYTVVVENS 81

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 7  TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
          T+P  +       T++ GE A   C +     P T+ W+++G+ + +S    IT   +Y 
Sbjct: 1  TLPATILTKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSSQRHQITST-EYK 58

Query: 67 SMLVIDSVSARHSGNYSCTVRN 88
          S   I  V     GNY+  V N
Sbjct: 59 STFEISKVQMSDEGNYTVVVEN 80

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS---SLLSINSVSAAHSGEYTCVASNTAAQ 188
           G P  T+ W KDG+P+      +  +  SF+   S ++I  V      EYTC+A N A +
Sbjct: 29  GFPEPTMTWTKDGEPIE-----SGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE 83

Query: 189 ARYSSKLQV 197
                 L+V
Sbjct: 84  QEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           GDP  TI W KDG  ++     ++S        L+I  V  A  G Y CVA NT   A  
Sbjct: 9   GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASV 64

Query: 192 SSKL 195
           S  L
Sbjct: 65  SMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
           +  G P   + W +   PLSP    N +   + +  L +++V  +  GEY C A N+   
Sbjct: 6   IAEGLPTPEVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS 61

Query: 189 ARYSSKLQVK 198
           AR+   + V+
Sbjct: 62  ARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPR------FPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           I     G+P  T+ W  +G  L+            V+    +   L  ++ +  ++G YT
Sbjct: 3   IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYT 62

Query: 180 CVASNTAAQARYS 192
            VASN   Q   S
Sbjct: 63  LVASNEYGQDSKS 75

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
           PP  I+W K+GK +S +   N +     S  L+I  V+   +G YT V +N  A
Sbjct: 11  PPPEIQWYKNGKLISEK---NRTKKSGHS--LTIKDVTEEDAGNYTVVLTNKQA 59

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193
           PP   +W KDGK +S +              L I  V+ A +G YT V  N+AA      
Sbjct: 11  PPPEFQWYKDGKLISGKHS---------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61

Query: 194 KLQV 197
            L++
Sbjct: 62  SLEL 65

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 116 GLP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSIN 168
           GLP      EG    + C V  GDP   + WLK+ + L+     NV  +   ++S L+I 
Sbjct: 6   GLPDVVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS-LTIK 63

Query: 169 SVSAAHSGEYTCVASN 184
            VS+  SG+Y  V  N
Sbjct: 64  GVSSEDSGKYGIVVKN 79

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G   R+ C    G P  TI W  +G P+    P +          L +++V    +  Y 
Sbjct: 1   GETGRLDCEA-EGIPQPTITWRLNGVPIEEL-PPDPRRRV-DGGTLILSNVQPNDTAVYQ 57

Query: 180 CVASN 184
           C ASN
Sbjct: 58  CNASN 62

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 36 GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
          G+   T++WLK+G+       +    V   +  L+++SV     GNY+C V N
Sbjct: 20 GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVAS 183
           C      P L  +W K+GK +  +  P N   +     SS L I+  S A +GEY C+ S
Sbjct: 5   CETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVS 64

Query: 184 N 184
           +
Sbjct: 65  S 65

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
           G P   I W K G  L     V+   L   S  L I+ V+    G+Y C A N     R 
Sbjct: 13  GYPQPVIAWTKGGSQL----SVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRT 68

Query: 192 SSKLQV 197
            ++L V
Sbjct: 69  VAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 14/72 (19%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV----------SAAHSGEYTCV 181
           G P  TI+WLK+G+PL      +  D  S   +L   S+            +  G Y CV
Sbjct: 27  GRPTPTIQWLKNGQPLE----TDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCV 82

Query: 182 ASNTAAQARYSS 193
           A N+  +A   +
Sbjct: 83  AHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143270 cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
            SS L+I +V+ +  G YTC AS+    A+ S+ + V 
Sbjct: 48  LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 86

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDL-DSFSSLLSINSVSAAHS 175
           G +  + C   HG+ P+ +RW K+ + ++P   R+ V+  ++ D   S L I       S
Sbjct: 1   GQKKEMSC-TAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDS 59

Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
           G ++C A N+  + R   +L V+
Sbjct: 60  GFFSCHAINSYGEDRGIIQLTVQ 82

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 20 TLNVGERASLIC----SITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS 75
           L   +   ++C         +    ++W KD + L+         V    S L+I +V+
Sbjct: 6  ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD---RKRFVK--GSKLLIQNVT 60

Query: 76 ARHSGNYSCTV 86
             +GNY+C +
Sbjct: 61 EEDAGNYTCKL 71

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 132 GDPPLTIRWLKDGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHS--GEYTCVASN 184
           G+PP T  W ++G    P + P      DS + ++   +   A    GEY C ASN
Sbjct: 9   GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN 64

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
            SS L+I + +   SG YTC AS+     + S+K+ + 
Sbjct: 47  LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNIH 84

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. This group also contains alpha-type platelet-derived growth factor receptor precursor (PDGFR)-alpha (CD140a), and PDGFR-beta (CD140b). PDGFRs alpha and beta have an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion that has protein tyrosine kinase activity. Length = 84

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
           G P  T +W +DG PLS         + S    L++ S     SG Y C A N     
Sbjct: 9   GHPRPTYQWFRDGTPLSD--GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
           P+I  F  P D       +  +     G  P+T  W+K  K +     + + + ++ SS 
Sbjct: 1   PQIIQF--PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTEN-SSK 57

Query: 165 LSINSVSAAHSGEYTCVASNT 185
           L+I      H G YT    N 
Sbjct: 58  LTITEGQQEHCGCYTLEVENK 78

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV----DQYNSMLVIDSVSARHS 79
           G++  + C+   G+ P+ ++W K+ R ++   +  +       D+  S L I       S
Sbjct: 1   GQKKEMSCT-AHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDS 59

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPP 105
           G +SC   N   ED  + +L V  PP
Sbjct: 60  GFFSCHAINSYGEDRGIIQLTVQEPP 85

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 132 GDPPLTIRWLK-DGKPLSPRFPVNVSDLDSF-SSLLSINSVSAAHSGEYTCVASNTAAQA 189
           GDP   I W+  DGK +S     N S    + +  L I   +   +G +TC+ASN A +A
Sbjct: 12  GDPEPAIHWISPDGKLIS-----NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA 66

Query: 190 RYSSKLQV 197
             + +L +
Sbjct: 67  TATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		99.97
KOG4194|consensus	873		99.95
KOG4221|consensus	1381		99.95
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG4194|consensus	873		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.91
KOG4221|consensus	1381		99.89
KOG4222|consensus	1281		99.88
PHA02785	326	IL-beta-binding protein; Provisional	99.88
KOG4222|consensus	1281		99.88
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.81
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.75
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.75
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.73
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.71
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.71
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.71
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.71
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.7
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.7
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.7
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.69
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.68
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.68
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.68
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.67
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.67
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.67
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.67
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.67
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.67
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.67
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.67
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.66
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.66
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.66
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.66
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.66
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.66
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.65
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.65
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.65
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.65
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.65
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.65
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.64
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.64
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.63
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.63
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.63
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.63
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.63
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.63
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.63
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.62
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.62
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.62
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.61
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.61
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.61
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.61
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.6
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.6
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.6
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.6
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.6
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.6
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.59
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.59
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.59
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.59
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.59
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.59
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.59
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.59
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.58
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.58
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.57
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.56
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.56
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.56
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.56
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.56
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.55
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.55
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.55
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.55
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.54
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.54
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.54
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.54
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.54
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.54
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.54
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.54
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.53
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.53
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.53
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.53
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.53
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.53
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.53
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.53
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.52
PHA02826	227	IL-1 receptor-like protein; Provisional	99.52
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.52
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.51
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.51
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.51
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.51
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.51
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.51
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.5
KOG3515|consensus	741		99.5
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.5
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.5
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.49
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.49
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.48
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.48
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.48
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.48
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.48
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.47
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.47
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.47
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.47
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.45
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.45
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.45
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.44
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.44
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.44
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.44
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.43
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.43
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.43
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.43
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.42
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.42
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.42
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.42
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.41
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.4
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.4
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.39
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.39
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.38
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.38
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.36
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.36
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.36
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.35
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.35
PHA03376	221	BARF1; Provisional	99.35
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.33
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.32
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.31
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.3
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.29
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.28
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.28
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.25
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.25
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.25
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.24
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.24
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.24
smart00409	86	IG Immunoglobulin.	99.24
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.24
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.24
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.22
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.21
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.19
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.19
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.19
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.19
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.18
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.18
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.16
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.15
smart00409	86	IG Immunoglobulin.	99.15
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.15
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.13
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.13
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.11
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.11
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.09
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.09
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.09
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.08
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.06
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.05
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.03
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.02
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.01
KOG3515|consensus	741		98.99
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.99
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.97
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.96
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.96
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.95
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.95
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.94
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.94
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.93
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.93
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.93
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.91
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.91
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.9
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.88
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.87
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.87
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.87
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.87
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.87
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.84
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.84
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.83
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.83
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.82
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.81
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.79
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.79
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.78
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.78
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.77
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.77
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.76
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.75
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.74
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.74
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.72
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.71
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.71
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.71
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.7
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.7
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.7
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.69
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.69
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.68
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.67
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.67
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.67
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.67
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.67
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.66
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.65
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.64
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.64
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.63
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.62
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.61
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.61
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.6
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.6
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.58
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.57
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.55
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.54
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.51
PHA03270	466	envelope glycoprotein C; Provisional	98.5
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.5
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.49
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.49
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.48
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.48
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.47
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.46
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.45
PHA03376	221	BARF1; Provisional	98.44
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.43
PHA03269	566	envelope glycoprotein C; Provisional	98.42
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.41
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.39
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.37
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.36
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.35
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.33
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.32
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.31
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.28
smart00407	75	IGc1 Immunoglobulin C-Type.	98.28
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.27
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.26
PHA03271	490	envelope glycoprotein C; Provisional	98.26
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.25
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.24
smart00407	75	IGc1 Immunoglobulin C-Type.	98.24
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.24
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.23
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.22
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.21
KOG1480|consensus	909		98.21
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.21
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.21
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.21
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.2
PHA03273	486	envelope glycoprotein C; Provisional	98.19
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.17
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.17
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.17
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.16
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.15
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.13
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.13
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.1
PHA03270	466	envelope glycoprotein C; Provisional	98.09
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.09
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.08
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.08
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.06
smart00406	81	IGv Immunoglobulin V-Type.	98.06
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.04
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.02
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.0
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.0
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.0
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.94
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.93
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.91
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.89
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.87
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.85
PHA03269	566	envelope glycoprotein C; Provisional	97.85
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.84
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.82
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.82
PHA03271	490	envelope glycoprotein C; Provisional	97.81
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.8
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.79
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.75
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.75
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.72
PHA02982	251	hypothetical protein; Provisional	97.7
PHA02633	63	hypothetical protein; Provisional	97.7
smart00406	81	IGv Immunoglobulin V-Type.	97.67
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.63
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.53
PHA02633	63	hypothetical protein; Provisional	97.48
PHA03273	486	envelope glycoprotein C; Provisional	97.43
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.34
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.19
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.17
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.11
PHA02982	251	hypothetical protein; Provisional	96.98
PHA03042	286	CD47-like protein; Provisional	96.9
KOG1480|consensus	909		96.63
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.57
PHA03042	286	CD47-like protein; Provisional	96.51
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.38
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.01
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.0
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.88
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.81
KOG4597|consensus	560		95.32
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.19
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	94.9
KOG4597|consensus	560		94.86
PHA02865	338	MHC-like TNF binding protein; Provisional	94.53
PHA02865	338	MHC-like TNF binding protein; Provisional	94.39
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.24
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.02
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.99
KOG0613|consensus	1205		93.53
PHA03283	542	envelope glycoprotein E; Provisional	92.19
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	91.86
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	91.45
PHA03052	69	Hypothetical protein; Provisional	90.47
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.27
KOG0613|consensus	1205		89.57
PHA03112	141	IL-18 binding protein; Provisional	89.0
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	88.93
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	88.34
PHA03240	258	envelope glycoprotein M; Provisional	88.15
KOG1026|consensus	774		87.71
PHA03286	492	envelope glycoprotein E; Provisional	84.29
KOG1026|consensus	774		83.11
PHA03189	348	UL14 tegument protein; Provisional	82.46
PHA03286	492	envelope glycoprotein E; Provisional	82.14
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	80.75
PHA03052	69	Hypothetical protein; Provisional	80.52

>KOG3513|consensus

Probab=100.00  E-value=7.4e-32  Score=218.37  Aligned_cols=225  Identities=22%  Similarity=0.329  Sum_probs=184.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ..|.+..+|.+...+++..+..|+++.|.|.+. +.|.+.|+|++||.++....+......  ....|+|.+++..|+|.
T Consensus       324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~-g~P~p~v~WlkNg~pl~~~~r~~~~~i--~~g~L~is~v~~~dsg~  400 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKAS-GKPNPTVKWLKNGEPLEPAERDPRYKI--DDGTLIISNVQESDSGV  400 (1051)
T ss_pred             EEEEEecCchhhcccceeEecCCCCeEEEEEec-CCCCCceEEeeCCeecCccCCCcceEE--eCCEEEEEecccccCeE
Confidence            467899999999999999999999999999995 999999999999999987665221111  16789999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcC-CCccccccCC-CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPF-DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD  159 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  159 (243)
                      |+|.|+|..|.....+.|.|... |.+...+... ..+..|.++.|.|.. .+.|.+.++|.+++..+....++.+..  
T Consensus       401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~~~~~r~~i~e--  477 (1051)
T KOG3513|consen  401 YQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKLLQSGRIRILE--  477 (1051)
T ss_pred             EEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCcccccCceEEECC--
Confidence            99999999999999999999876 5555444332 245689999999999 799999999999998655555444432  


Q ss_pred             cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCccccc----cc
Q psy11132        160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSFE----QD  228 (243)
Q Consensus       160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~----~~  228 (243)
                        .++|.|.+++.+|+|.|+|.|.|..|.......|.|+     .++.+++       ..+..+++.|+...-+    .|
T Consensus       478 --dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk-----d~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f  550 (1051)
T KOG3513|consen  478 --DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK-----DATRITLAPSNTDVKVGESVTLTCEASHDPSLDITF  550 (1051)
T ss_pred             --CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe-----cCceEEeccchhhhccCceEEEEeecccCCCcceEE
Confidence              5789999999999999999999999999999999999     4555444       4467888899876433    78


Q ss_pred             ceEEeCCeeEE
Q psy11132        229 SWMIDNENYVY  239 (243)
Q Consensus       229 ~W~~~~~~~~~  239 (243)
                      .|.+||+.+.+
T Consensus       551 ~W~~nG~~id~  561 (1051)
T KOG3513|consen  551 TWKKNGRPIDF  561 (1051)
T ss_pred             EEEECCEEhhc
Confidence            99999986543

>KOG3513|consensus

Probab=99.97  E-value=2e-29  Score=204.48  Aligned_cols=219  Identities=24%  Similarity=0.372  Sum_probs=175.2

Q ss_pred             cCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+... ++.....+|+.+.|.|.+ .|.|.|.|.|.|.+..... .+..   .......|.|.+++.+|+|.|.|.|
T Consensus       239 ~~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~~~-~r~~---~~~~~~vL~I~nv~~~D~G~Y~C~A  313 (1051)
T KOG3513|consen  239 YAPKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKPPP-RRAT---YSNYGKVLKIPNVQYEDAGEYECIA  313 (1051)
T ss_pred             cCCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCCCC-ccee---eeccccEEEecccCcCCCeEEEEEE
Confidence            46666655 557778899999999999 6999999999998874322 1111   1123678999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (243)
                      .|..|.......+.|..+|.....+.. ..+..|+++.+.|.+ .|.|.|.+.|+++|.++..........  -....|.
T Consensus       314 eN~~G~~~~~~~v~v~a~P~w~~~~~d-~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~--i~~g~L~  389 (1051)
T KOG3513|consen  314 ENSRGSATHSGHVTVYAPPYWLQKPQD-TEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYK--IDDGTLI  389 (1051)
T ss_pred             ecccccceeeEEEEEecCchhhcccce-eEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceE--EeCCEEE
Confidence            999999999999999999998875544 677899999999999 599999999999999998654411111  1247899


Q ss_pred             EeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCC--C---eeeeeccceeeeccCccccc--ccceEEeCC
Q psy11132        167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLP--P---SYTLVFSQASYMSTSYYSFE--QDSWMIDNE  235 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~--p---~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~  235 (243)
                      |.+++..|+|.|.|.|.|.+|..-+++.|.|....+..+  |   .+....+..+++.|.....|  .++|.+.++
T Consensus       390 is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~  465 (1051)
T KOG3513|consen  390 ISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE  465 (1051)
T ss_pred             EEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc
Confidence            999999999999999999999999999999985321111  1   13445678889999988876  899999887

>KOG4194|consensus

Probab=99.95  E-value=3.1e-27  Score=180.38  Aligned_cols=230  Identities=23%  Similarity=0.348  Sum_probs=172.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecC-----CCceEE-------EEeeeeceEEEEeec
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDN-----SAALSI-------THVDQYNSMLVIDSV   74 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-----~~~~~~-------~~~~~~~~~l~i~~~   74 (243)
                      ..|++...|+.+....|+.++|+|.+... ..+.++.|.++......     ...+.-       .......+.|++.++
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            45788888888889999999999998532 34569999998763211     000000       001112478999999


Q ss_pred             CCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         75 SARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      +..|+|.|+|+++|..|+ -+..+++.|...|.+...+.. .++..|....|.|.+ .|.|.|++.|.++|..-.+..+.
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~d-ltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~e  659 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-LTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARE  659 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeeccCccccCccc-ceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhh
Confidence            999999999999999997 577899999999999988766 788899999999999 69999999999988763322222


Q ss_pred             eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCe--eeeeccceeeeccCcccc---ccc
Q psy11132        154 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS--YTLVFSQASYMSTSYYSF---EQD  228 (243)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~--~~~~~~~~~~~~~~~~~~---~~~  228 (243)
                      .....-.....+.|.++..+|.|.|+|.|.|.+|..+..+++.|...+...-|.  -.+..++..++.|..-..   |..
T Consensus       660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~  739 (873)
T KOG4194|consen  660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL  739 (873)
T ss_pred             heeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence            222222224568899999999999999999999999999999999543222221  234557777887765544   589


Q ss_pred             ceEEeCCeeEE
Q psy11132        229 SWMIDNENYVY  239 (243)
Q Consensus       229 ~W~~~~~~~~~  239 (243)
                      .|+|+++.+.+
T Consensus       740 ~W~k~d~pil~  750 (873)
T KOG4194|consen  740 EWFKEDKPILI  750 (873)
T ss_pred             cccCCCCceEE
Confidence            99999887765

>KOG4221|consensus

Probab=99.95  E-value=8.7e-26  Score=183.61  Aligned_cols=231  Identities=20%  Similarity=0.291  Sum_probs=175.2

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .|.+...+.+...+.+.++..|+++.|.|.+. +.+.+.+.|.++..++....++....    ++.|.|.+++..|.|.|
T Consensus       134 ~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn-~e~~p~i~w~kn~~pl~~~~r~i~lp----sG~L~I~~~qp~d~g~y  208 (1381)
T KOG4221|consen  134 KVALAGLADFALQPESTTLLYGQTALFSCEVN-AEPVPTIMWLKNDQPLPLDSRVIVLP----SGALEISGLQPSDTGEY  208 (1381)
T ss_pred             EEEecccCccccCccceeEecCCcEEEEEEEc-CccCceeEEecccccccCCCcEEEcC----CCcEEecccccCCCceE
Confidence            46677788899888899999999999999994 77778999999999887766665543    67899999999999999


Q ss_pred             EEEEEeCCCc-ceeEEEEEEEcCCCcc-----ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         83 SCTVRNMVAE-DTQVQRLIVNVPPKIE-----SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        83 ~C~~~~~~~~-~~~~~~l~v~~~p~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      +|.+++.... .+....|.|...|...     ...+....+..|+.+.|.|.+ .+.|.|.+.|.+++..+.... +.+.
T Consensus       209 rc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~riv  286 (1381)
T KOG4221|consen  209 RCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIV  286 (1381)
T ss_pred             EEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEE
Confidence            9999986553 4566777776333221     112233567889999999999 699999999999999988654 2222


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCccccc--ccceEE
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSFE--QDSWMI  232 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~  232 (243)
                      ..  ..+.|.|.+++..|+|.|+|.|.|......+..++.|..++  ...|-.+.........+.|...+-+  .+.|++
T Consensus       287 l~--g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k  364 (1381)
T KOG4221|consen  287 LV--GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK  364 (1381)
T ss_pred             Ee--cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence            11  24678999999999999999999977777788888888322  1112223334456677888776654  899999


Q ss_pred             eCCeeEEeec
Q psy11132        233 DNENYVYCTY  242 (243)
Q Consensus       233 ~~~~~~~~~~  242 (243)
                      ||+.+...+|
T Consensus       365 Ngd~~ipsdy  374 (1381)
T KOG4221|consen  365 NGDRIIPSDY  374 (1381)
T ss_pred             cCcccCcccc
Confidence            9998765544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=1.3e-23  Score=157.69  Aligned_cols=204  Identities=21%  Similarity=0.298  Sum_probs=140.5

Q ss_pred             cccccCCeEEEEEEee----CCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         19 RTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      ..+.+|+.+.|.|.+.    .+.|.+.+.|+|++....   +  ..... .+..|.|.++..+|+|.|+|.++|..+...
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~  109 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPID-NGSNMLILNPTQSDSGIYICITKNETYCDM  109 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEcc-CCceEEEcccCcccCeEEEEEEECCCcceE
Confidence            3567899999999862    377778999999975321   1  11111 134588999999999999999999988777


Q ss_pred             eEEEEEEEcCCC--ccccccCCCCCCCCCcEEEEEEe----ecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEe
Q psy11132         95 QVQRLIVNVPPK--IESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN  168 (243)
Q Consensus        95 ~~~~l~v~~~p~--~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~  168 (243)
                      .++.|.|.....  +..... ...+.+|....|.|..    ..+.|++.++|+++.. +.. .....    ..++.|.|.
T Consensus       110 ~s~~L~V~~~~~~~~~~~~~-~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~-~r~~~----~~~~~L~i~  182 (326)
T PHA02785        110 MSLNLTIVSVSESNIDLISY-PQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN-KRLKQ----RTPGIITIE  182 (326)
T ss_pred             EEEEEEEEecCCCccceeec-cceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC-cceEe----cCCCeEEEe
Confidence            778887765432  221111 1345689999999962    1356889999987643 221 11111    113679999


Q ss_pred             ecCCCCCeeEEEEEEccCcceeee----EEEEEEeecCCCCCe------eeeeccceeeeccCccccc-----ccceEEe
Q psy11132        169 SVSAAHSGEYTCVASNTAAQARYS----SKLQVKGNLNRLPPS------YTLVFSQASYMSTSYYSFE-----QDSWMID  233 (243)
Q Consensus       169 ~~~~~d~g~y~C~~~n~~g~~~~~----~~l~v~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~-----~~~W~~~  233 (243)
                      +++.+|.|.|+|.|.|..|.....    +.+.|..  +..||.      .....+..+.+.|.....|     .+.|++|
T Consensus       183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn  260 (326)
T PHA02785        183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN  260 (326)
T ss_pred             ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec--cCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC
Confidence            999999999999999988765433    3444432  223443      3445688899999988654     5899999


Q ss_pred             CCee
Q psy11132        234 NENY  237 (243)
Q Consensus       234 ~~~~  237 (243)
                      |..+
T Consensus       261 g~~i  264 (326)
T PHA02785        261 GMYY  264 (326)
T ss_pred             CEEC
Confidence            8754

>KOG4194|consensus

Probab=99.92  E-value=6.4e-24  Score=162.51  Aligned_cols=188  Identities=24%  Similarity=0.351  Sum_probs=154.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCee-ecC--CCceEEEEeeeeceEEEEeecCCCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRY-LDN--SAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~--~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +.|.|...|.+...|.+.++..|+.+.|.|.++ |.|.|.|.|.++|.. ++.  ..++.+...   +..+-|.+++.+|
T Consensus       605 ~KltV~~~PsFtktP~dltl~tg~mArl~CaAt-G~P~PeIawqkdggtdFPAA~eRRl~Vmpe---dd~f~Itnvk~eD  680 (873)
T KOG4194|consen  605 AKLTVNQAPSFTKTPEDLTLRTGQMARLECAAT-GHPRPEIAWQKDGGTDFPAARERRLHVMPE---DDVFFITNVKIED  680 (873)
T ss_pred             eEEEeeccCccccCcccceeecccceeeeeecc-CCCCcceeehhcCCCCCchhhhheeeecCC---CCEEEEecccccc
Confidence            568899999999999999999999999999995 889999999998876 432  233333332   4568899999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEe
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      +|.|+|.|.|..|..+..++|.|.+.|.+...-. ...+..|+++.|.|.+ .+.|+ |.+.|+|+++++.-..++... 
T Consensus       681 ~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~-~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil~t~rh~f~-  757 (873)
T KOG4194|consen  681 QGIYTCTAQNVAGQISANATLTVLETPSFSIPLE-DQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPILITERHTFP-  757 (873)
T ss_pred             cceeEEeeeccccceeeceEEEEecCCccccccc-ceEEEecceEEEEEec-CCCCCCccccccCCCCceEEeecccCC-
Confidence            9999999999999999999999999988765533 3778899999999999 57776 999999999887644333322 


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                        .....|.+.+...+|+|.|+|...|..|.....+.+.+.
T Consensus       758 --d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  758 --DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             --CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence              224668888999999999999999999998887777665

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.91  E-value=1.2e-22  Score=143.59  Aligned_cols=162  Identities=20%  Similarity=0.279  Sum_probs=116.3

Q ss_pred             CCcccccCCeEEEEEEeeCC----------CCCceeEEEECCeee--c-CCCc-----eEEEEeeeeceEEEEeecCCCC
Q psy11132         17 PERTLNVGERASLICSITKG----------DIPLTIKWLKDGRYL--D-NSAA-----LSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~----------~~~~~v~W~~~~~~~--~-~~~~-----~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      ....+.+|+++.|.|.+.+.          ...+.+.|+|++...  . .+.+     ............|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            35678899999999997421          234589999987542  1 1111     0011111125689999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCee
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~  154 (243)
                      +|.|+|.+.|..+.....+.|.|..++       ....+.+|+.+.|.|.+.++    .|.|+++|++++..+.......
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            999999999988777777777774322       11345689999999987533    4578999999999987554333


Q ss_pred             EEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..   .....|.|.+++.+|+|.|+|.|....+.
T Consensus       183 ~~---~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        183 LR---NNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             Ee---CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            22   22458999999999999999999986543

>KOG4221|consensus

Probab=99.89  E-value=4.3e-22  Score=162.46  Aligned_cols=214  Identities=22%  Similarity=0.376  Sum_probs=161.8

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      |...+...++.+|+++.|.|.+. +.|.+.|+|.+|+..+.-.. +.+...  +...|.|.+++..|+|.|+|+|.|...
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~~ds-~rivl~--g~~slliS~a~~~dSg~YtC~Atn~~D  315 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKISVDS-YRIVLV--GGSSLLISNATDDDSGKYTCRATNTND  315 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeeeecc-eEEEEe--cccceEEeccccccCceEEEEecCCCc
Confidence            44557778899999999999994 88999999999998886543 222222  257799999999999999999999766


Q ss_pred             cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC
Q psy11132         92 EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS  171 (243)
Q Consensus        92 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  171 (243)
                      .......|.|..+|.+...+.. ....++.++.+.|.+ .|.|.+.+.|+++|..+...+...+.. +  .. |+|..+-
T Consensus       316 ~idasaev~V~a~P~~~~~p~~-l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ipsdy~ki~~-~--~~-lrIlgi~  389 (1381)
T KOG4221|consen  316 SIDASAEVTVLAPPGFTKAPTT-LVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPSDYFKIVG-G--GN-LRILGIV  389 (1381)
T ss_pred             ccccceEEEEEcCCCCCCCCcc-eeeeeccceeEeCCC-CCCCcceEEEEecCcccCcccceEecC-C--CC-cEEEEEe
Confidence            6777888999999888766544 555679999999999 688999999999999887744333322 1  22 8888889


Q ss_pred             CCCCeeEEEEEEccCcceeeeEEEEEEee--------cCCCCCeeeeeccceeeeccCccc-------ccccceEEeCC
Q psy11132        172 AAHSGEYTCVASNTAAQARYSSKLQVKGN--------LNRLPPSYTLVFSQASYMSTSYYS-------FEQDSWMIDNE  235 (243)
Q Consensus       172 ~~d~g~y~C~~~n~~g~~~~~~~l~v~~~--------~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~W~~~~~  235 (243)
                      ..|.|.|.|.+.|..|.....+.+.+...        .+..|+-+...+.....+.|....       ...++|++..+
T Consensus       390 ~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~  468 (1381)
T KOG4221|consen  390 KSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVE  468 (1381)
T ss_pred             cccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecC
Confidence            99999999999999999988877765422        222344455666666666665541       12678876544

>KOG4222|consensus

Probab=99.88  E-value=5e-22  Score=161.20  Aligned_cols=221  Identities=26%  Similarity=0.397  Sum_probs=173.6

Q ss_pred             EEEe-cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          4 IFST-VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         4 l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |.+. .+-.+...+.+..+..|+.+.|.|.=..+.|.+.+.|.|+|+++.....-....  ...+.|.|.+++..|+|.|
T Consensus       125 L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l--isgG~LlIsnvrksD~GtY  202 (1281)
T KOG4222|consen  125 LIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL--ISGGNLLISNVRKSDEGTY  202 (1281)
T ss_pred             EEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE--ecCCcEEEeccccCCCcee
Confidence            4444 344677777788889999999999877788889999999999987322111111  1267899999999999999


Q ss_pred             EEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132         83 SCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF  161 (243)
Q Consensus        83 ~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  161 (243)
                      .|++.|..|. .+...+|.|.++|.+...+.. ..+..|..+.+.|.+ .|.|.+++.|.+++..+..........    
T Consensus       203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~-~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~~P~~ry~i~~d----  276 (1281)
T KOG4222|consen  203 ACVATNMVGERESIPARLSVQEKPWFWKRPKD-LAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPSLPRSRYSILDD----  276 (1281)
T ss_pred             eeeecccccccccccceeeeccCCcccccccc-ceeeccccccccccc-CCCCCCceeeeccCCCCCccceeeeec----
Confidence            9999999987 567789999999988765544 667889999999999 799999999999877776543322221    


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccc-------eeeeccCccccc--ccceEE
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ-------ASYMSTSYYSFE--QDSWMI  232 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~-------~~~~~~~~~~~~--~~~W~~  232 (243)
                      +.+|.|.+++..|.|.|.|.+.|..|...+...++|+     .||.+...+.+       .+.|.|+...-|  .+.|.+
T Consensus       277 ~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~-----apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~k  351 (1281)
T KOG4222|consen  277 TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ-----APPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLK  351 (1281)
T ss_pred             cccccccccCCCcccceeeeccccccccccccceEEe-----cCcccccccCccccccCceEEeeeecCCCCCcceEEec
Confidence            3678999999999999999999999999999999999     78877665543       455667666554  899998


Q ss_pred             eCCee
Q psy11132        233 DNENY  237 (243)
Q Consensus       233 ~~~~~  237 (243)
                      .|.-.
T Consensus       352 eg~q~  356 (1281)
T KOG4222|consen  352 EGSQD  356 (1281)
T ss_pred             cCcce
Confidence            87544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.88  E-value=2.7e-20  Score=139.84  Aligned_cols=175  Identities=18%  Similarity=0.319  Sum_probs=115.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEe----eCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSI----TKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +|.+........+.+|+.+.|.|..    ..+.+++.+.|++++ .+. ..++...    .++.|.|.+++.+|+|.|+|
T Consensus       121 ~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~-~~r~~~~----~~~~L~i~~v~~~d~G~Y~C  194 (326)
T PHA02785        121 ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLR-NKRLKQR----TPGIITIEDVRKNDAGYYTC  194 (326)
T ss_pred             CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccC-CcceEec----CCCeEEEeecChhhCeEEEE
Confidence            3444333344557799999999972    135677899998764 222 2222221    14689999999999999999


Q ss_pred             EEEeCCCcce----eEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCC----
Q psy11132         85 TVRNMVAEDT----QVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFP----  152 (243)
Q Consensus        85 ~~~~~~~~~~----~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~----  152 (243)
                      .+.+..+...    ..+.|.|..+...+ ...+....+..|+.+.|.|.+. |.|.   +.+.|+++|..+...+.    
T Consensus       195 ~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~-g~P~~~~~~v~W~kng~~i~~~~~~~~~  273 (326)
T PHA02785        195 VLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVS-LRPPTTDADVFWISNGMYYEEDDEDGDG  273 (326)
T ss_pred             EEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEE-CCCCCCCceEEEEECCEECCCcCCCCce
Confidence            9999877543    33455554322111 1111224556799999999995 6664   58999999998864321    


Q ss_pred             -eeEEee----c---cceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        153 -VNVSDL----D---SFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       153 -~~~~~~----~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                       ......    +   .....|.|.+++.+|.|.|+|.|.|..|...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence             111110    0   1146799999999999999999999885443

>KOG4222|consensus

Probab=99.88  E-value=9.2e-22  Score=159.69  Aligned_cols=217  Identities=26%  Similarity=0.398  Sum_probs=156.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC----CCceEEEEeeeeceEEEEee-----cCCCC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN----SAALSITHVDQYNSMLVIDS-----VSARH   78 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~-----~~~~d   78 (243)
                      .+|.+...+.+..+..|++++|.|.+. +.|+++|.|+|+|.....    ..++...     +++|.+..     ....|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~as-G~ppPti~w~k~G~~~~~~e~~shR~~lp-----~gsLf~l~~ahg~~a~~d  103 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKAS-GDPPPTIEWYKDGENVFKGEPGSHRFLLP-----DGSLFLLRLAHGKKAGHD  103 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCC-CCCCCceecccCCcccCCCCCCCcceecC-----CccEEEEecccCCcccCC
Confidence            578888888889999999999999994 888899999999964322    1222211     22233322     12348


Q ss_pred             CeeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         79 SGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      .|.|.|++.|..+. .++...|.+...+.-.........+..|+.+.|.|.-..|.|.+.+.|.|+|..+......... 
T Consensus       104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~-  182 (1281)
T KOG4222|consen  104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA-  182 (1281)
T ss_pred             CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE-
Confidence            89999999998886 4666667766544332222222566789999999998889999999999999988722211111 


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceee-eEEEEEEeecCCCCCeeeeeccceeeeccCcccc---------cc
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF---------EQ  227 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------~~  227 (243)
                       ....+.|.|.++...|.|.|.|+++|..|.... ..+++|.     ++|.+...+++.++..+....|         +.
T Consensus       183 -lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-----e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~  256 (1281)
T KOG4222|consen  183 -LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-----EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPT  256 (1281)
T ss_pred             -EecCCcEEEeccccCCCceeeeeecccccccccccceeeec-----cCCccccccccceeecccccccccccCCCCCCc
Confidence             112467999999999999999999999998754 5889998     7777777777666666655555         37


Q ss_pred             cceEEeCCee
Q psy11132        228 DSWMIDNENY  237 (243)
Q Consensus       228 ~~W~~~~~~~  237 (243)
                      +.|.+++..+
T Consensus       257 Vrwkk~~~~~  266 (1281)
T KOG4222|consen  257 VRWKKDDPSL  266 (1281)
T ss_pred             eeeeccCCCC
Confidence            8998877554

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.81  E-value=8.4e-19  Score=108.41  Aligned_cols=96  Identities=24%  Similarity=0.442  Sum_probs=82.7

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.|...+....+..|+.+.|.|.+. |.|.+.+.|+|++..+....++.+.... ..+.|.|.++.++|+|.|+|.+.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVT-GTQPITCTWMKFRKQIQEGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEc-ccCCCceEEEECCEEecCCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcC
Confidence            5666677888899999999999995 8899999999999999876666554433 3578999999999999999999999


Q ss_pred             CCcceeEEEEEEEcCCCc
Q psy11132         90 VAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        90 ~~~~~~~~~l~v~~~p~~  107 (243)
                      .|.....+.|.|.+.|..
T Consensus        79 ~G~~~~~~~l~V~~~P~p   96 (98)
T cd05762          79 LGSRQAQVNLTVVDKPDP   96 (98)
T ss_pred             CCceeEEEEEEEecCCCC
Confidence            999999999999988754

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.75  E-value=2.6e-17  Score=101.75  Aligned_cols=85  Identities=24%  Similarity=0.357  Sum_probs=72.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|++.+.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        10 ~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~-~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~   87 (98)
T cd05762          10 MKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIEN-TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN   87 (98)
T ss_pred             EEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEe-cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence            567899999999999 699999999999999997655443332 233578999999999999999999999999999999


Q ss_pred             EEEEeec
Q psy11132        195 LQVKGNL  201 (243)
Q Consensus       195 l~v~~~~  201 (243)
                      |.|.+.+
T Consensus        88 l~V~~~P   94 (98)
T cd05762          88 LTVVDKP   94 (98)
T ss_pred             EEEecCC
Confidence            9998554

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.75  E-value=1.6e-17  Score=100.81  Aligned_cols=87  Identities=22%  Similarity=0.389  Sum_probs=73.5

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ||.+...+.+..+.+|+.+.|.|.+. |.|.+.++|++++..+....+...     .+..|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N   74 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFAL-GNPVPVIRWRKILEPMPATAEISM-----SGAVLKIFNIQPEDEGTYECEAEN   74 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEec-ccCCCEEEEEECCcCCCCCCEEec-----CCCEEEECcCChhhCEEEEEEEEc
Confidence            67888888888899999999999995 889999999999987765433221     245799999999999999999999


Q ss_pred             CCCcceeEEEEEE
Q psy11132         89 MVAEDTQVQRLIV  101 (243)
Q Consensus        89 ~~~~~~~~~~l~v  101 (243)
                      ..|.....+.|.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd05851          75 IKGKDKHQARVYV   87 (88)
T ss_pred             CCCceEEEEEEEE
Confidence            9999888888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.73  E-value=9.8e-17  Score=98.40  Aligned_cols=85  Identities=26%  Similarity=0.366  Sum_probs=70.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      ++...+.+|+++.|.|.+. +.|.+.+.|++++..+....++.+.........|.|.+++.+|+|.|+|.+.|..|....
T Consensus         8 p~~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEE-ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            4566789999999999995 888899999999999877666555433222467999999999999999999999998887


Q ss_pred             EEEEEE
Q psy11132         96 VQRLIV  101 (243)
Q Consensus        96 ~~~l~v  101 (243)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            776653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.72  E-value=1.3e-16  Score=97.93  Aligned_cols=90  Identities=26%  Similarity=0.488  Sum_probs=75.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+.... ..+.|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITSTE-YKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEe-ecCCCEEEEEECCEECCCCCcEEEEEcC-CeeEEEECCCCcccCEeEEEEEE
Confidence            578888888899999999999999995 8888899999999988776665544322 25789999999999999999999


Q ss_pred             eCCCcceeEEEE
Q psy11132         88 NMVAEDTQVQRL   99 (243)
Q Consensus        88 ~~~~~~~~~~~l   99 (243)
                      |..|.....+.|
T Consensus        80 N~~G~~~~~~~l   91 (92)
T cd05747          80 NSEGKQEAQFTL   91 (92)
T ss_pred             cCCCCEeEEEEe
Confidence            999987776655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.72  E-value=1.6e-16  Score=98.29  Aligned_cols=85  Identities=26%  Similarity=0.373  Sum_probs=69.6

Q ss_pred             CCcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         17 PERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ....+.+|+++.|.|.+. + .|++.+.|+|+|.++...........+    ...+.|.|..+..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~-g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVE-AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEE-ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            456788999999999996 6 888899999999999764443322221    2357899999999999999999999999


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                      ..+..+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            98888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.71  E-value=1.7e-16  Score=98.25  Aligned_cols=83  Identities=24%  Similarity=0.366  Sum_probs=68.6

Q ss_pred             CCCCCCCcEEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeEEee----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+..|+++.|.|.+ .| .|+|.+.|+|+|..+...........    ....+.|.|..+..+|+|.|+|.|.|..|..
T Consensus        13 ~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          13 IFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             EEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            456789999999999 57 89999999999999986544333222    1235789999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy11132        190 RYSSKLQVK  198 (243)
Q Consensus       190 ~~~~~l~v~  198 (243)
                      +.++.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            998888876

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.71  E-value=1.7e-16  Score=97.39  Aligned_cols=82  Identities=28%  Similarity=0.402  Sum_probs=68.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        11 v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05737          11 VTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT   89 (92)
T ss_pred             EEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence            456789999999999 5999999999999999876655444333233467999999999999999999999999888877


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      +.|
T Consensus        90 v~v   92 (92)
T cd05737          90 VSV   92 (92)
T ss_pred             EeC
Confidence            764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.71  E-value=2.8e-16  Score=94.79  Aligned_cols=81  Identities=19%  Similarity=0.243  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+..|+.+.|.|.+ .|.|.|.+.|++++..+...............+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         6 ~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   84 (86)
T cd05894           6 VVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV   84 (86)
T ss_pred             EEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence            45789999999999 69999999999999988754322222222335789999999999999999999999998888877


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      .|
T Consensus        85 ~V   86 (86)
T cd05894          85 KV   86 (86)
T ss_pred             EC
Confidence            64

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=1.5e-16  Score=97.54  Aligned_cols=90  Identities=31%  Similarity=0.542  Sum_probs=77.2

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.|...+.+..+.+|+++.|.|.+. +.|.+.+.|++++..+....+..+.... ..+.|.|.+++.+|+|.|+|.+.+.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence            4556667788899999999999996 6688899999999999987777765544 4789999999999999999999999


Q ss_pred             CCcceeEEEEEE
Q psy11132         90 VAEDTQVQRLIV  101 (243)
Q Consensus        90 ~~~~~~~~~l~v  101 (243)
                      .+.....+.|.|
T Consensus        79 ~g~~~~~~~l~V   90 (90)
T PF07679_consen   79 SGEATASVNLTV   90 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            888888877765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.71  E-value=2.2e-16  Score=92.26  Aligned_cols=74  Identities=24%  Similarity=0.350  Sum_probs=59.9

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+... .++...........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            4789999 69999999999999998743 33333333333357999999999999999999999999988888764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=1.6e-16  Score=96.37  Aligned_cols=77  Identities=22%  Similarity=0.405  Sum_probs=64.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.|.++|++++..+.......     .....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        11 ~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   84 (88)
T cd05851          11 TYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPATAEIS-----MSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQAR   84 (88)
T ss_pred             EEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCCCCEEe-----cCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEE
Confidence            556789999999999 699999999999998776542221     12357999999999999999999999999988888


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        85 l~V   87 (88)
T cd05851          85 VYV   87 (88)
T ss_pred             EEE
Confidence            876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.70  E-value=4.7e-16  Score=93.76  Aligned_cols=82  Identities=22%  Similarity=0.339  Sum_probs=67.7

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      .+.+.+|+.+.|.|.+. |.|.|.+.|++++.++... .++.+.... ..+.|.|.++.++|+|.|+|.+.|..|.....
T Consensus         4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894           4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             EEEEEcCCEEEEEeeEe-ecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            46688999999999995 8899999999999998753 344443322 25789999999999999999999999998877


Q ss_pred             EEEEE
Q psy11132         97 QRLIV  101 (243)
Q Consensus        97 ~~l~v  101 (243)
                      +.|.|
T Consensus        82 ~~l~V   86 (86)
T cd05894          82 LFVKV   86 (86)
T ss_pred             EEEEC
Confidence            77654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.70  E-value=4e-16  Score=95.77  Aligned_cols=87  Identities=24%  Similarity=0.493  Sum_probs=67.0

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCC-CceeEEEE-CCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDI-PLTIKWLK-DGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      +.+....+.+|+++.|.|.+. +.| ++.++|++ ++..+.. ..++.+.......++|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~-G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVA-GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEe-CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            445666788999999999996 676 47999998 7766654 3344443333335789999999999999999999986


Q ss_pred             -CcceeEEEEEE
Q psy11132         91 -AEDTQVQRLIV  101 (243)
Q Consensus        91 -~~~~~~~~l~v  101 (243)
                       +....++.|.|
T Consensus        84 ~g~~~~s~~l~v   95 (96)
T cd05865          84 EGESEATVNVKI   95 (96)
T ss_pred             CCcEEEEEEEEE
Confidence             77777777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.70  E-value=2.2e-16  Score=92.77  Aligned_cols=74  Identities=32%  Similarity=0.491  Sum_probs=62.3

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +|+.+.|.|.+ .|.|.|.++|++++..+.........    ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58999999999 69999999999999988754433221    2457999999999999999999999999988887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.69  E-value=3.4e-16  Score=91.16  Aligned_cols=73  Identities=26%  Similarity=0.454  Sum_probs=61.5

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.|.+.|++++..+....++....    .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6789999999 689999999999998876554443322    357999999999999999999999999998888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.68  E-value=3.8e-16  Score=91.75  Aligned_cols=74  Identities=26%  Similarity=0.468  Sum_probs=62.1

Q ss_pred             cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +|+.+.|.|.+ .+.|.+.+.|+|++..+....+....    ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            68999999999 48899999999999988765443322    2468999999999999999999999999888777754

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.68  E-value=1.8e-15  Score=91.76  Aligned_cols=82  Identities=26%  Similarity=0.538  Sum_probs=67.1

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      |+.++|.|.+. +.|++.+.|++++..+... .++.+....   ...+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~~-g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAH-GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEE-CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            78999999995 7888899999999887543 344333211   223689999999999999999999999999999999


Q ss_pred             EEEcCCC
Q psy11132        100 IVNVPPK  106 (243)
Q Consensus       100 ~v~~~p~  106 (243)
                      .|..+|.
T Consensus        80 ~V~~~P~   86 (88)
T cd05735          80 TVQEPPD   86 (88)
T ss_pred             EEeCCCC
Confidence            9988765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.68  E-value=6.8e-16  Score=90.20  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.+.|+|++..+.. ..++.+.....+..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~-G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQIS-AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEE-ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999995 889999999999998874 345544433333458999999999999999999999999888877764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.67  E-value=7e-16  Score=95.63  Aligned_cols=83  Identities=27%  Similarity=0.378  Sum_probs=68.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+..|+.+.|.|.+ .|+|+|.+.|+|+|.++...........     ....+.|.|..+..+|+|.|+|.|.|..|..
T Consensus        13 ~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          13 EFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             EEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            446679999999999 6999999999999999886544322211     1234789999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy11132        190 RYSSKLQVK  198 (243)
Q Consensus       190 ~~~~~l~v~  198 (243)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            988888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.67  E-value=1.6e-15  Score=91.79  Aligned_cols=81  Identities=27%  Similarity=0.510  Sum_probs=65.2

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+..|+.+.|.|.+ .|.|.+.+.|+++|..+.................|.|..+..+|+|.|+|.|.|..|....++.|
T Consensus         5 ~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           5 AVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            46789999999999 68999999999999988755432211111224578999999999999999999999999888887


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.67  E-value=1.4e-15  Score=93.39  Aligned_cols=82  Identities=26%  Similarity=0.553  Sum_probs=63.9

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEe-CCEecCC-CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC-ccee
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQAR  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~  190 (243)
                      ..+..|+++.|.|.+ .|.| +|.++|++ ++..+.. ..+......+...+.|.|.++..+|+|.|+|.|.|.. |...
T Consensus        10 ~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865          10 GEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             cEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence            456789999999999 5888 57999998 7766654 2223333333345789999999999999999999996 8888


Q ss_pred             eeEEEEE
Q psy11132        191 YSSKLQV  197 (243)
Q Consensus       191 ~~~~l~v  197 (243)
                      .++.|.|
T Consensus        89 ~s~~l~v   95 (96)
T cd05865          89 ATVNVKI   95 (96)
T ss_pred             EEEEEEE
Confidence            8888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.67  E-value=1e-15  Score=93.21  Aligned_cols=87  Identities=25%  Similarity=0.402  Sum_probs=70.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......     .....|.|.+++.+|+|.|+|.+.|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N   74 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFAL-GNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAEN   74 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEee-EeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEE
Confidence            45566667778899999999999994 88888999999887665433221     2257899999999999999999999


Q ss_pred             CCCcceeEEEEEE
Q psy11132         89 MVAEDTQVQRLIV  101 (243)
Q Consensus        89 ~~~~~~~~~~l~v  101 (243)
                      ..|.......|.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd04968          75 IKGKDTHQGRIYV   87 (88)
T ss_pred             CCCcEEEEEEEEE
Confidence            9999887777766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.67  E-value=7.6e-16  Score=89.70  Aligned_cols=73  Identities=23%  Similarity=0.360  Sum_probs=62.0

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. +.|.+.+.|+|++..+....++.+..    +..|.|.+++.+|.|.|+|.|.|..|.......|.|
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPK-AAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecc-eeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            78999999995 88889999999998887666655432    467999999999999999999999999888777754

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.67  E-value=3.5e-15  Score=90.44  Aligned_cols=79  Identities=29%  Similarity=0.511  Sum_probs=64.6

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCC-CeeEEe---eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSD---LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      |+.+.|.|.+ .|.|++.+.|++++..+.... .+....   .....+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            7889999999 589999999999998886432 232222   12234789999999999999999999999999999999


Q ss_pred             EEEe
Q psy11132        196 QVKG  199 (243)
Q Consensus       196 ~v~~  199 (243)
                      .|.+
T Consensus        80 ~V~~   83 (88)
T cd05735          80 TVQE   83 (88)
T ss_pred             EEeC
Confidence            9984

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.67  E-value=1.2e-15  Score=92.03  Aligned_cols=83  Identities=22%  Similarity=0.375  Sum_probs=68.9

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++...     ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGT   76 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEee-EeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence            3446677899999999999995 8888899999999988765554432     457999999999999999999999998


Q ss_pred             ceeEEEEEE
Q psy11132         93 DTQVQRLIV  101 (243)
Q Consensus        93 ~~~~~~l~v  101 (243)
                      ...++.|.|
T Consensus        77 ~~~~~~l~V   85 (85)
T cd05728          77 IYASAELAV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            877776653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.67  E-value=1.1e-15  Score=89.50  Aligned_cols=74  Identities=27%  Similarity=0.380  Sum_probs=59.0

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCC-eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+..... ............|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            4789999 6999999999999998875433 222222222347999999999999999999999999988888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.66  E-value=7.8e-16  Score=87.46  Aligned_cols=66  Identities=32%  Similarity=0.448  Sum_probs=56.2

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +.|.|.+ .|.|.|.++|+|+|..+...         ...+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEE-EEeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4689999 69999999999999988632         124689999999999999999999999988777777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.66  E-value=1.3e-15  Score=90.66  Aligned_cols=81  Identities=25%  Similarity=0.480  Sum_probs=63.9

Q ss_pred             CeEEEEEEeeC-CCCCceeEEEECCeeecC---CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132         25 ERASLICSITK-GDIPLTIKWLKDGRYLDN---SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        25 ~~~~l~C~~~~-~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      +++.|.|.+.. +.+++.+.|+++|..+..   ..++.........+.|.|.+++..|+|.|+|.|.+..+..+....|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            47899999963 455779999999999863   22332221112356899999999999999999999999999999999


Q ss_pred             EEcCC
Q psy11132        101 VNVPP  105 (243)
Q Consensus       101 v~~~p  105 (243)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.66  E-value=2.3e-15  Score=92.11  Aligned_cols=86  Identities=23%  Similarity=0.348  Sum_probs=69.0

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      .|..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++..........+|.|.+++.+|+|.|+|.+.|..|...
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEE-EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            35567789999999999985 77888999999999887666554433222235799999999999999999999999888


Q ss_pred             eEEEEEE
Q psy11132         95 QVQRLIV  101 (243)
Q Consensus        95 ~~~~l~v  101 (243)
                      ..+.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            7776653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.66  E-value=2.5e-15  Score=88.24  Aligned_cols=74  Identities=26%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+... ..............|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            4789999 69999999999999998743 23333222223457999999999999999999999999988887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=2.5e-15  Score=92.88  Aligned_cols=91  Identities=25%  Similarity=0.439  Sum_probs=71.8

Q ss_pred             CCCccCCC--CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          9 PPKLSPTN--PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         9 ~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ||.+...+  .+..+.+|+.+.|.|.+. |.|.+.+.|+++|..+... .++..   ....+.|.|.+++.+|+|.|+|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   76 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSF---NEDGSEMTILDVDKLDEAEYTCI   76 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEecc-EeCCCEEEEEECCEECcCCCCEEEE---eCCCCEEEECCCChhhCEEEEEE
Confidence            56666543  345688999999999995 8888999999999988664 22222   12245799999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEc
Q psy11132         86 VRNMVAEDTQVQRLIVNV  103 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~  103 (243)
                      +.|..|.....+.|.|..
T Consensus        77 a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          77 AENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEcCCCeEEEEEEEEEEe
Confidence            999999988888888753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.66  E-value=3.6e-15  Score=98.77  Aligned_cols=119  Identities=21%  Similarity=0.333  Sum_probs=83.2

Q ss_pred             EEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEe
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP  146 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~  146 (243)
                      +|+|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+...+.. .....|+.+.|.|.+.+.+|+ +.+.|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            6899999999999999999988788888889999988887655432 233368899999999644564 59999999864


Q ss_pred             cCC----CCCee----EEeecc---ceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        147 LSP----RFPVN----VSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       147 ~~~----~~~~~----~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ...    .....    ....++   ..+.|.+..-..++.+.|+|.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            221    01111    111111   135566665445556799999988654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.65  E-value=3.2e-15  Score=90.47  Aligned_cols=82  Identities=23%  Similarity=0.445  Sum_probs=65.3

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ..+.+|+.+.|.|.+. +.|.+.+.|+|++..+....+............|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus         4 ~~v~~G~~~~L~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcC-CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            3578899999999995 788889999999998876544321111223567999999999999999999999999888877


Q ss_pred             EEE
Q psy11132         99 LIV  101 (243)
Q Consensus        99 l~v  101 (243)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.65  E-value=3.4e-15  Score=91.60  Aligned_cols=89  Identities=24%  Similarity=0.477  Sum_probs=69.9

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      +|.+...+ ....+..|+.+.|.|.+ .|.|.+.+.|+++|..+.......... ....+.|.|.++..+|+|.|+|.|.
T Consensus         3 ~~~~~~~p-~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           3 PATILTKP-RSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSSQRHQITS-TEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCcccccC-ccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCCCcEEEEE-cCCeeEEEECCCCcccCEeEEEEEE
Confidence            34444333 23667899999999999 699999999999999887654444332 2335789999999999999999999


Q ss_pred             ccCcceeeeEEE
Q psy11132        184 NTAAQARYSSKL  195 (243)
Q Consensus       184 n~~g~~~~~~~l  195 (243)
                      |..|....++.|
T Consensus        80 N~~G~~~~~~~l   91 (92)
T cd05747          80 NSEGKQEAQFTL   91 (92)
T ss_pred             cCCCCEeEEEEe
Confidence            999998877765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.65  E-value=2.7e-15  Score=89.30  Aligned_cols=78  Identities=18%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             CcEEEEEEeec-CCCCCEEEEEeCCEecCCC--C-CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        121 ARTRVICGVTH-GDPPLTIRWLKDGKPLSPR--F-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       121 ~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      +++.|.|.+.. +.+++.+.|+++|..+...  . .+.........+.|.|.+++..|+|.|+|.|.|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46889999953 4558899999999999632  1 222221112356899999999999999999999999999999999


Q ss_pred             EE
Q psy11132        197 VK  198 (243)
Q Consensus       197 v~  198 (243)
                      |.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            99

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.65  E-value=1.7e-15  Score=93.87  Aligned_cols=84  Identities=24%  Similarity=0.277  Sum_probs=68.5

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe-----eeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-----DQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ...+..|+.+.|.|.+. +.|+|.+.|+|+|.++....+......     ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~-g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVE-AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEE-EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            45678899999999995 889999999999999876554322211     122468999999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy11132         93 DTQVQRLIVN  102 (243)
Q Consensus        93 ~~~~~~l~v~  102 (243)
                      .+.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.65  E-value=3.5e-15  Score=91.29  Aligned_cols=82  Identities=21%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.....+.........+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        11 v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          11 VTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             EEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            557899999999999 5889999999999998876544433322333457999999999999999999999999988887


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      +.|
T Consensus        90 v~~   92 (92)
T cd05891          90 VSV   92 (92)
T ss_pred             EEC
Confidence            764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=3.3e-15  Score=88.21  Aligned_cols=75  Identities=25%  Similarity=0.434  Sum_probs=60.9

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.|.++|+++|..+..........  ...+.|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRH--VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEE--eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            7889999999 699999999999999887543211111  12467999999999999999999999999888888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.64  E-value=7.6e-15  Score=88.30  Aligned_cols=80  Identities=28%  Similarity=0.453  Sum_probs=62.4

Q ss_pred             CeEEEEEEeeCCCCCc--eeEEEECCeeecCCC---ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         25 ERASLICSITKGDIPL--TIKWLKDGRYLDNSA---ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        25 ~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      +.+.|.|.+. +.|.+  .+.|++++..+....   ++.........+.|.|.+++..|+|.|+|.|.|..+..+..+.|
T Consensus         1 ~~~~L~C~a~-g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHAS-HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEEe-cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            4689999996 66665  689999998875422   22221222224689999999999999999999999999999999


Q ss_pred             EEEcCC
Q psy11132        100 IVNVPP  105 (243)
Q Consensus       100 ~v~~~p  105 (243)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=6.7e-15  Score=89.90  Aligned_cols=81  Identities=20%  Similarity=0.309  Sum_probs=65.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.|.+.|++++..+....... .........|.|.++..+|.|.|+|.|.|..|....++.
T Consensus        10 ~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~   87 (90)
T cd04972          10 TVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDT-LETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ   87 (90)
T ss_pred             EEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEE-EEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence            346789999999999 599999999999999876543321 112233568999999999999999999999999888887


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        88 L~v   90 (90)
T cd04972          88 VTV   90 (90)
T ss_pred             EeC
Confidence            764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.64  E-value=2.3e-15  Score=85.54  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=55.6

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      +.|.|.+. +.|.|.+.|+|+|..+....         ..+.|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus         1 ~~l~c~v~-g~P~P~v~W~kdg~~l~~~~---------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVA-AYPPPEFQWYKDGKLISGKH---------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEE-EeCCCEEEEEECCEECcccC---------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999995 88999999999999886321         25689999999999999999999999987777776653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.64  E-value=1.1e-14  Score=87.65  Aligned_cols=77  Identities=25%  Similarity=0.395  Sum_probs=60.8

Q ss_pred             CcEEEEEEeecCCCCC--EEEEEeCCEecCCCC---CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        121 ARTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      +++.|.|.+ .|.|.+  .+.|++++..+....   .+.........+.|.|.+++..|+|.|+|.|.|..|...+++.|
T Consensus         1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            468999999 588865  689999998875432   12111122234689999999999999999999999999999999


Q ss_pred             EEE
Q psy11132        196 QVK  198 (243)
Q Consensus       196 ~v~  198 (243)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd05854          80 VVR   82 (85)
T ss_pred             EEE
Confidence            998

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.64  E-value=4.4e-15  Score=86.36  Aligned_cols=71  Identities=24%  Similarity=0.492  Sum_probs=58.1

Q ss_pred             cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      .+.|.|.+ .|.|.|.++|++++..+..........    ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999 699999999999999887654433322    245788899999999999999999999988888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=4.8e-15  Score=91.82  Aligned_cols=91  Identities=23%  Similarity=0.449  Sum_probs=69.3

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-----ceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .|+|...+....+..|+.+.|.|.+. |.|.+.+.|++++..+....     ++.+.. ....+.|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~-G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEAS-GDPIPSITWRTSTRNISSEEKTLDGHIVVRS-HARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEee-EeCCCEEEEEECCccccCCccccCccEEEEc-CccEEEEEEecCccCcCEEEE
Confidence            56776666555566689999999995 88889999999987764321     222221 112368999999999999999


Q ss_pred             EEEEeCCCcceeEEEEEE
Q psy11132         84 CTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        84 C~~~~~~~~~~~~~~l~v  101 (243)
                      |.|.|..|..+..+.|.|
T Consensus        80 C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          80 CTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEecCCCCeeEEEEEEC
Confidence            999999999888877764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.63  E-value=8.2e-15  Score=89.51  Aligned_cols=84  Identities=14%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+.......... ......|.|.+++.+|.|.|+|.|.|..|....
T Consensus         7 p~~~~v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           7 PNATVVYEGGTATIRCTAE-GSPLPKVEWIIAGLIVIQTRTDTLET-TVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEE-EcCCCeEEEEECCEEccCCccEEEEe-cCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            3445588999999999996 88999999999998876544322221 122468999999999999999999999998887


Q ss_pred             EEEEEE
Q psy11132         96 VQRLIV  101 (243)
Q Consensus        96 ~~~l~v  101 (243)
                      .+.|.|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            777653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.63  E-value=8.1e-15  Score=86.16  Aligned_cols=74  Identities=30%  Similarity=0.458  Sum_probs=60.8

Q ss_pred             cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      .+.|.|.+ .|.|.|.+.|+++|..+......... .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIE-TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEE-ECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999 69999999999999998655443332 2334678999999999999999999999999888887764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=4.9e-15  Score=89.39  Aligned_cols=77  Identities=34%  Similarity=0.563  Sum_probs=65.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.|.+.|++++..+.........     ...|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         9 ~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05728           9 TEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE   82 (85)
T ss_pred             cEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence            567889999999999 69999999999999988765433321     357999999999999999999999999888887


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        83 l~V   85 (85)
T cd05728          83 LAV   85 (85)
T ss_pred             EEC
Confidence            764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.63  E-value=3.7e-15  Score=87.28  Aligned_cols=73  Identities=27%  Similarity=0.419  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.+.+.|++++..+.........    ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIW----PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEEC----CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6889999999 68999999999999988755444322    1356999999999999999999999999988888764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.63  E-value=2e-15  Score=92.51  Aligned_cols=81  Identities=37%  Similarity=0.633  Sum_probs=70.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++..+............ ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        10 ~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~   87 (90)
T PF07679_consen   10 VTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGEATASVN   87 (90)
T ss_dssp             EEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence            556789999999999 57899999999999999886666654444 6789999999999999999999999999988888


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        88 l~V   90 (90)
T PF07679_consen   88 LTV   90 (90)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.63  E-value=6.1e-15  Score=86.88  Aligned_cols=75  Identities=25%  Similarity=0.444  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.|+++|+++|..+...........+  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6789999999 69999999999999988643221111111  347889999999999999999999999999988876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=6.9e-15  Score=89.85  Aligned_cols=82  Identities=27%  Similarity=0.429  Sum_probs=64.9

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecC--------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      |+.+.|.|.+ .|.|.|.+.|++++..+.        ....+..    ...+.|.|.++..+|+|.|.|.|.|..|....
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV----SQTGDLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEE----CCCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            6889999999 699999999999876431        1111111    11356999999999999999999999999999


Q ss_pred             eEEEEEEeecCCCCC
Q psy11132        192 SSKLQVKGNLNRLPP  206 (243)
Q Consensus       192 ~~~l~v~~~~~~~~p  206 (243)
                      .+.|.|.+.....||
T Consensus        76 ~~~l~V~~~~~~~~~   90 (90)
T cd05726          76 KAYLEVTDVIADRPP   90 (90)
T ss_pred             EEEEEEeecccCCCC
Confidence            999999976665665

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.63  E-value=5.2e-15  Score=86.77  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=57.3

Q ss_pred             EEEEEeecCCCCCEEEEEeCCEecCCCCCeeE----EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV----SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      .|.|.+ .|.|.|+++|+++|..+........    .......+.|.|.++..+|+|.|+|.|.|..|..++++.+.
T Consensus         2 ~i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            377899 6999999999999999986543221    11122356899999999999999999999999988777654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.63  E-value=7.1e-15  Score=91.24  Aligned_cols=90  Identities=20%  Similarity=0.352  Sum_probs=67.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--CeeecC-----CCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLDN-----SAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+.. +.+..+.+|+.++|.|.+. +.|.+.+.|+++  +..+..     ..++.+.. ......|.|.+++.+|+|.
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~-G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-~~~~~~L~I~~v~~~D~G~   78 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAE-GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-QHGESSLHIKDVKLSDSGR   78 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecc-cCCCCeEEEEECCCCceeccCCcCcCceEEEee-cCCeeEEEEeeCCcCCCEE
Confidence            566654 4578899999999999995 888899999994  444432     12333322 1124689999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEE
Q psy11132         82 YSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+|.|.|..|....++.|.|
T Consensus        79 Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          79 YDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEeccCCcceeEEEEeC
Confidence            99999999998877777654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.63  E-value=3.7e-15  Score=87.20  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.+.|+|++..+... .++.+.....+...|.|.+++.+|+|.|+|.|.|..|..+....|.|
T Consensus         1 v~l~C~v~-G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVS-GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEe-EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999995 8999999999999988653 34444333222347999999999999999999999999888877764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.62  E-value=1.8e-14  Score=90.91  Aligned_cols=98  Identities=27%  Similarity=0.393  Sum_probs=73.4

Q ss_pred             ecCCCccCCCCCccc----ccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEee---eeceEEEEeecC-CC
Q psy11132          7 TVPPKLSPTNPERTL----NVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVD---QYNSMLVIDSVS-AR   77 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~l~i~~~~-~~   77 (243)
                      ..+|.+...+....+    ..|+.+.|.|.+. +.|.+.+.|++++..+... .++......   ...+.|+|.+++ .+
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~   80 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQ-GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL   80 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECc-ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence            457777766552222    2468999999995 8888999999999988642 333322111   124679999997 58


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      |.|.|+|.|.|..|.....+.|.+..+|
T Consensus        81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          81 DYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            9999999999999999999999988766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=8.8e-15  Score=90.44  Aligned_cols=81  Identities=27%  Similarity=0.416  Sum_probs=66.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+++.|.|.+ .|.|.+.+.|+++|..+.........  ....+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus        13 ~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          13 ATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             eEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            356789999999999 69999999999999988755222111  122457999999999999999999999999998888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        90 L~V~   93 (95)
T cd05730          90 LKVF   93 (95)
T ss_pred             EEEE
Confidence            8886

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.62  E-value=8.4e-15  Score=86.45  Aligned_cols=75  Identities=24%  Similarity=0.400  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. +.|.+.+.|+++|..+...........  ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVE-GIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEee-EeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            78999999995 888889999999998865322111111  2567999999999999999999999999887777776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.62  E-value=6.5e-15  Score=87.16  Aligned_cols=75  Identities=25%  Similarity=0.364  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.|.+.|++++..+........  .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPR--RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcce--EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7889999999 6999999999999998875443211  1222467999999999999999999999999988888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=8.8e-15  Score=90.65  Aligned_cols=80  Identities=28%  Similarity=0.398  Sum_probs=61.9

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      +..|+.+.|.|.+ .|.|.|.++|++++..+.....    ..........+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        14 ~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          14 MELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             EEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            3458999999999 5999999999998876653211    1111122234689999999999999999999999999888


Q ss_pred             EEEEE
Q psy11132        193 SKLQV  197 (243)
Q Consensus       193 ~~l~v  197 (243)
                      +.|.|
T Consensus        93 ~~l~v   97 (97)
T cd05869          93 MYLEV   97 (97)
T ss_pred             EEEEC
Confidence            87764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.62  E-value=8e-15  Score=86.09  Aligned_cols=74  Identities=22%  Similarity=0.290  Sum_probs=59.2

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~L~C~v~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVS-AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEe-ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999995 8899999999999988743 44444333333457999999999999999999999999888777754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.61  E-value=9.7e-15  Score=88.85  Aligned_cols=77  Identities=19%  Similarity=0.366  Sum_probs=63.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......     .....|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus        11 ~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   84 (88)
T cd04968          11 TYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGR   84 (88)
T ss_pred             eEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEE
Confidence            456789999999999 699999999999887665432221     12468999999999999999999999999888888


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        85 l~V   87 (88)
T cd04968          85 IYV   87 (88)
T ss_pred             EEE
Confidence            776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.61  E-value=8.8e-15  Score=86.93  Aligned_cols=77  Identities=26%  Similarity=0.415  Sum_probs=62.2

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      +...+.+|+.+.|.|.+. +. .+.+.|+|+|.++....++.+.     ...|.|.+++.+|+|.|+|.+.|..+.....
T Consensus         2 ~~~~~~~G~~v~l~C~~~-~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~   74 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLR-DD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTY   74 (79)
T ss_pred             CcEEecCCCCEEEEEEec-CC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence            456688999999999995 54 4589999999998776555432     3579999999999999999999988877666


Q ss_pred             EEEE
Q psy11132         97 QRLI  100 (243)
Q Consensus        97 ~~l~  100 (243)
                      +.|.
T Consensus        75 ~~v~   78 (79)
T cd04973          75 FSVN   78 (79)
T ss_pred             EEEe
Confidence            6554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.61  E-value=1.3e-14  Score=88.26  Aligned_cols=84  Identities=20%  Similarity=0.383  Sum_probs=64.8

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      .+.+..+.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~-G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EecceEEcCCCeEEEEEEEE-EeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            34566789999999999995 7777 899998 4667766556554322 224589999999999999999999998874


Q ss_pred             -eeEEEEEE
Q psy11132         94 -TQVQRLIV  101 (243)
Q Consensus        94 -~~~~~l~v  101 (243)
                       ..++.|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             55666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.61  E-value=8e-15  Score=85.87  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=61.4

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. +.|.+.+.|++++..+....++....    ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPK-AAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeee-EcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            78999999984 78888999999999887666554332    457999999999999999999999999888777754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.61  E-value=1.5e-14  Score=89.64  Aligned_cols=90  Identities=24%  Similarity=0.373  Sum_probs=68.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-----ceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      +|.+.. ..+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....     ++... .......|.|.+++.+|+|.|+
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~   78 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAE-GDPIPEITWRRATRNFSEGDKSLDGRIVVR-GHARVSSLTLKDVQLTDAGRYD   78 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEe-EcCCCcEEEEECCcccCCCCccccceEEEe-CCccEEEEEECcCCcCcCEEeE
Confidence            577753 4467789999999999995 78888999999986654321     22221 1122468999999999999999


Q ss_pred             EEEEeCCCcceeEEEEEE
Q psy11132         84 CTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        84 C~~~~~~~~~~~~~~l~v  101 (243)
                      |.+.|..|..+.++.|.|
T Consensus        79 C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          79 CEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEeCCCCcEEEEEEeC
Confidence            999999999887777654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.60  E-value=1.1e-14  Score=85.75  Aligned_cols=75  Identities=24%  Similarity=0.393  Sum_probs=60.2

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. |.|.|.|.|+++|.++...........  ....|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRAN-GNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEee-EeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            78899999995 889999999999998864322111111  1357899999999999999999999999888888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=1.7e-14  Score=85.65  Aligned_cols=72  Identities=24%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             EEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe------eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      .|.|.+ .|.|.|.++|+++|..+..........      .....+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus         2 ~i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            368999 699999999999999998654322211      112356799999999999999999999999988877664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.60  E-value=1.6e-14  Score=84.91  Aligned_cols=74  Identities=28%  Similarity=0.426  Sum_probs=61.1

Q ss_pred             eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      .+.|.|.+. |.|.+.+.|+++|..+....+..+.... ....|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 ~~~l~c~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPIS-GRPTPTVTWSKDGKPLKLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEe-eeCCCeEEEEECCEEcCCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            368999994 8899999999999998666655544322 3678999999999999999999999999888777754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.60  E-value=8e-15  Score=85.11  Aligned_cols=70  Identities=27%  Similarity=0.442  Sum_probs=57.8

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +.|.|.+ .|.|.|.+.|+++|..+.......     .....|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKV-KAYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999 699999999999999987653221     124679999999999999999999999988887777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=1.5e-14  Score=84.15  Aligned_cols=71  Identities=25%  Similarity=0.446  Sum_probs=58.5

Q ss_pred             eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      ++.|.|.+. |.|.+.+.|+|++..+....++.+..    ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~v~l~C~~~-G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVT-GKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEE-EeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999995 88999999999999887665544332    345888899999999999999999999888777754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.60  E-value=2.4e-14  Score=89.53  Aligned_cols=92  Identities=25%  Similarity=0.432  Sum_probs=65.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC----CceEEEEeeeeceEEEE--eecCCCCCeeE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS----AALSITHVDQYNSMLVI--DSVSARHSGNY   82 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i--~~~~~~d~G~Y   82 (243)
                      ||.+...+.+..+.+|+.+.|.|.+. +.|.+.+.|+|+|..+...    ..............+.+  ..++.+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAE-GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCC-cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            67888888888999999999999995 8888899999999988651    11111111111122222  23368999999


Q ss_pred             EEEEEeCCCc-ceeEEEEEE
Q psy11132         83 SCTVRNMVAE-DTQVQRLIV  101 (243)
Q Consensus        83 ~C~~~~~~~~-~~~~~~l~v  101 (243)
                      +|.+.|..|. .+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 666666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.60  E-value=3e-14  Score=86.75  Aligned_cols=80  Identities=23%  Similarity=0.421  Sum_probs=63.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ce
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DT   94 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~   94 (243)
                      +.+..+.+|++++|.|.+. +. .+.+.|++++..+... ++.+.   .....|.|.+++++|+|.|+|.|.|..|. .+
T Consensus        10 ~~~~~v~~g~~v~l~C~a~-g~-~p~i~W~kng~~l~~~-~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAE-GQ-ATYIWWVNNGSLLVPP-RLQLS---NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             cCccccccCCcEEEEEEeC-CC-CCEEEEEECCEECCCC-CEEEe---CCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            4466899999999999995 66 7899999999887653 33222   12468999999999999999999999987 45


Q ss_pred             eEEEEEE
Q psy11132         95 QVQRLIV  101 (243)
Q Consensus        95 ~~~~l~v  101 (243)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            5666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.6e-14  Score=85.09  Aligned_cols=74  Identities=28%  Similarity=0.445  Sum_probs=55.2

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.++|++++....................|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus         1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999 6999999999998864322111111111122357899999999999999999999999888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.59  E-value=2.6e-14  Score=88.57  Aligned_cols=82  Identities=26%  Similarity=0.337  Sum_probs=63.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.....    ..........+.|.|.+++.+|+|.|.|.|.|..|...
T Consensus        11 ~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          11 QTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             eeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            567889999999999 5899999999999866543211    11111222356899999999999999999999999988


Q ss_pred             eeEEEEE
Q psy11132        191 YSSKLQV  197 (243)
Q Consensus       191 ~~~~l~v  197 (243)
                      .++.|.|
T Consensus        90 ~s~~l~v   96 (96)
T cd05732          90 QSMYLEV   96 (96)
T ss_pred             EEEEEeC
Confidence            8877754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=7.9e-15  Score=84.82  Aligned_cols=68  Identities=37%  Similarity=0.598  Sum_probs=56.5

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      +.|.|.+ .|.|.|.+.|++++..+..........    .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4789999 699999999999999887554433321    3579999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=1.1e-14  Score=84.74  Aligned_cols=70  Identities=27%  Similarity=0.434  Sum_probs=56.9

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+......    .......|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIA-EGLPTPEVHWDRIDGPLSPNRTK----KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCcCCCCCcee----EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999 69999999999998876543211    1123468999999999999999999999999888888776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.59  E-value=2.7e-14  Score=86.24  Aligned_cols=77  Identities=25%  Similarity=0.382  Sum_probs=60.6

Q ss_pred             CcEEEEEEeecCCCCC--EEEEEeCCEecCCCCC---eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        121 ARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFP---VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      +++.|.|.+ .|.|.+  .+.|+++|..+.....   +.........+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            468999999 588866  6799999998764321   1111112235789999999999999999999999999999999


Q ss_pred             EEE
Q psy11132        196 QVK  198 (243)
Q Consensus       196 ~v~  198 (243)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd04970          80 IVR   82 (85)
T ss_pred             EEE
Confidence            998

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.59  E-value=2.4e-14  Score=87.63  Aligned_cols=85  Identities=21%  Similarity=0.438  Sum_probs=63.3

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..+....+.+|+.+.|.|.+. +.|+ .+.|++ ++..+....+..........+.|+|.+++.+|+|.|+|.+.|..+.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~-G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVI-GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeE-eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            345567789999999999996 6665 999998 5666655444444333334578999999999999999999998654


Q ss_pred             -ceeEEEEE
Q psy11132         93 -DTQVQRLI  100 (243)
Q Consensus        93 -~~~~~~l~  100 (243)
                       ...++.|.
T Consensus        83 ~~~~sv~l~   91 (92)
T cd04977          83 ESEATVNLK   91 (92)
T ss_pred             cceeEEEEE
Confidence             55566554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.59  E-value=3.5e-14  Score=84.21  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=60.8

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+++.|.|.+ .|.|.|.+.|++++..+....+..... ....+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITS-EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEE-CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            6889999999 599999999999998877654433322 233578999999999999999999999998766655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.59  E-value=1.1e-14  Score=83.76  Aligned_cols=69  Identities=22%  Similarity=0.412  Sum_probs=56.0

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +.|.|.+ .|.|.|.+.|+++|..+......      .....|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus         1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~~~~------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKY-YGYPPPEVKWYKNGQLIVLNHTF------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCCCEE------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            3689999 69999999999999998764321      113579999999999999999999999987766666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=3.5e-14  Score=86.18  Aligned_cols=81  Identities=32%  Similarity=0.548  Sum_probs=63.1

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-   93 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   93 (243)
                      +....+.+|+++.|.|.+..+.|.+.+.|++++..+... .+.....    ...|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            456778899999999997457888899999999887653 3332221    4679999999999999999999998864 


Q ss_pred             eeEEEEE
Q psy11132         94 TQVQRLI  100 (243)
Q Consensus        94 ~~~~~l~  100 (243)
                      +..+.|.
T Consensus        79 s~~~~l~   85 (86)
T cd05724          79 SAAARLS   85 (86)
T ss_pred             eeeEEEE
Confidence            4444443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.58  E-value=4.3e-14  Score=85.37  Aligned_cols=80  Identities=29%  Similarity=0.469  Sum_probs=61.9

Q ss_pred             CeEEEEEEeeCCCCCc--eeEEEECCeeecCCC---ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         25 ERASLICSITKGDIPL--TIKWLKDGRYLDNSA---ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        25 ~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      +++.|.|.+. +.|.+  .+.|+++|..+....   .+.........+.|.|.+++..|+|.|+|.+.|..+..+..+.|
T Consensus         1 e~~~L~C~~~-g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHAS-HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEEe-cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            4789999995 66655  679999999875422   11111112235789999999999999999999999998899999


Q ss_pred             EEEcCC
Q psy11132        100 IVNVPP  105 (243)
Q Consensus       100 ~v~~~p  105 (243)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=2.7e-14  Score=84.47  Aligned_cols=75  Identities=20%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. +.|.+.+.|++++..+.......  ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAE-GIPQPTITWRLNGVPIEELPPDP--RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEce-eeCCCEEEEEECCEECCCCCCcc--eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            78999999995 88888999999999886544321  11122578999999999999999999999999888887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.58  E-value=6e-14  Score=88.54  Aligned_cols=80  Identities=25%  Similarity=0.438  Sum_probs=63.5

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC-CeeEEee---ccceeEEEEeecC-CCCCeeEEEEEEccCcceeee
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDL---DSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~---~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..|..+.|.|.+ .|.|.+.+.|++++..+.... .+.....   ....+.|.|.++. .+|.|.|+|.|.|..|....+
T Consensus        21 ~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~   99 (109)
T cd05773          21 DGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD   99 (109)
T ss_pred             CCCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence            357899999999 599999999999999886432 2221111   1224679999987 589999999999999999999


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      +.|.+.
T Consensus       100 i~L~~~  105 (109)
T cd05773         100 IQLVST  105 (109)
T ss_pred             EEEEec
Confidence            999888

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.57  E-value=2e-14  Score=83.43  Aligned_cols=70  Identities=20%  Similarity=0.364  Sum_probs=57.2

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      +.|.|.+. +.|.+.+.|+|+|..+....+..     .....|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~-g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVK-AYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEE-EeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46999995 88989999999999987654322     125789999999999999999999999987777766653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.57  E-value=4.6e-14  Score=87.58  Aligned_cols=81  Identities=25%  Similarity=0.390  Sum_probs=61.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecCCC-----CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLSPR-----FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..+.+|+.++|.|.+ .|.|.|.+.|++.  +..+...     .+.... .......|.|.+++.+|+|.|.|.|.|..|
T Consensus        11 ~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870          11 ETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-GQHGESSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             EEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEe-ecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence            567889999999999 6999999999984  3333221     112221 122346799999999999999999999999


Q ss_pred             ceeeeEEEEE
Q psy11132        188 QARYSSKLQV  197 (243)
Q Consensus       188 ~~~~~~~l~v  197 (243)
                      ....++.|.|
T Consensus        89 ~~~~~~~l~~   98 (98)
T cd05870          89 GHQKSMYLDI   98 (98)
T ss_pred             cceeEEEEeC
Confidence            9888877754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.56  E-value=5.7e-14  Score=83.29  Aligned_cols=74  Identities=26%  Similarity=0.320  Sum_probs=59.2

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      |+++.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus         1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVAT-GVPTPIINWRLNWGHVPDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEE-EecCCEEEEEECCeECCCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            78999999995 8888999999999888766655443322 24689999999999999999999999876544433

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.56  E-value=6.8e-14  Score=80.55  Aligned_cols=68  Identities=22%  Similarity=0.470  Sum_probs=54.1

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      |+++.|.|.+ .|.|.|.+.|++++..+.......     .....|.|.++  .|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEMP-----VGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEe-eecCCCEEEEEECCEECCCcccee-----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999 699999999999998876543221     12346888876  47899999999999988877665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=5e-14  Score=83.68  Aligned_cols=76  Identities=22%  Similarity=0.384  Sum_probs=60.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+. .+.+.|+++|..+.........     ...|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         4 ~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           4 YSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             EEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            446789999999999 465 5689999999988765433322     247999999999999999999999998777776


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      +.|
T Consensus        77 v~V   79 (79)
T cd04973          77 VNV   79 (79)
T ss_pred             EeC
Confidence            654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.56  E-value=6.6e-14  Score=85.09  Aligned_cols=80  Identities=24%  Similarity=0.449  Sum_probs=61.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~  192 (243)
                      ..+..|+++.|.|.+ .|.|. .+.|++ ++..+....+... ...+..+.|.|..+..+|+|.|+|.|.|..|.. .++
T Consensus        10 ~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~-~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   86 (92)
T cd05866          10 VELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVV-QKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT   86 (92)
T ss_pred             eEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEE-EeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence            457789999999999 58887 999997 4666655444333 223335689999999999999999999999875 566


Q ss_pred             EEEEE
Q psy11132        193 SKLQV  197 (243)
Q Consensus       193 ~~l~v  197 (243)
                      +.|.+
T Consensus        87 i~l~~   91 (92)
T cd05866          87 VVLEI   91 (92)
T ss_pred             EEEEE
Confidence            66654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.56  E-value=8.8e-14  Score=82.18  Aligned_cols=73  Identities=27%  Similarity=0.447  Sum_probs=55.7

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee--eEEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY--SSKLQVK  198 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~l~v~  198 (243)
                      ++|.|.+ .|.|.|.+.|+|+|..+..........  .....|.|.++..+|+|.|.|.|.|..|....  .+.|.|.
T Consensus         1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4789999 699999999999999886543221111  12357999999999999999999999998754  4555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.55  E-value=2.3e-14  Score=82.86  Aligned_cols=68  Identities=31%  Similarity=0.527  Sum_probs=56.6

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      +.|.|.+. +.|.+.+.|+|++..+....++.+..    ...|.|.+++.+|+|.|+|.+.|..|..+..+.|
T Consensus         1 v~L~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQ-GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecce-EeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999995 88888999999999887665554332    4679999999999999999999999988776655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.55  E-value=8.6e-14  Score=81.62  Aligned_cols=71  Identities=20%  Similarity=0.387  Sum_probs=56.6

Q ss_pred             EEEEeeCCCCCceeEEEECCeeecCCCceEEE--E--eeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132         29 LICSITKGDIPLTIKWLKDGRYLDNSAALSIT--H--VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        29 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      |.|.+. |.|.|.++|+|+|..+....+....  .  .....+.|.|.+++..|+|.|+|+|.|..|....++.+.
T Consensus         3 i~~~v~-G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVK-GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEe-EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            788884 9999999999999999876543221  1  112346899999999999999999999999887777654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=9e-14  Score=81.71  Aligned_cols=73  Identities=33%  Similarity=0.577  Sum_probs=57.6

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+.+.|.|.+ .|.|.|.+.|++ ++..+.........    ....|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVY----DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEe----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6889999999 689999999997 56655543322221    1357899999999999999999999999888777754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=1.8e-13  Score=83.33  Aligned_cols=77  Identities=25%  Similarity=0.453  Sum_probs=61.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|+.++|.|.+ .|. .+.+.|++++..+.... ..   .......|.|.+++.+|+|.|.|.|.|..|... ..+
T Consensus        13 ~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~~-~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          13 QPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPPR-LQ---LSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             cccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCCC-EE---EeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            567899999999999 588 99999999998876432 11   122245799999999999999999999999754 456


Q ss_pred             EEEE
Q psy11132        194 KLQV  197 (243)
Q Consensus       194 ~l~v  197 (243)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            6655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.55  E-value=4.8e-14  Score=81.60  Aligned_cols=69  Identities=32%  Similarity=0.494  Sum_probs=55.6

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+.... ....    ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~-~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEV-GGDPVPTVLWRKEDGELPKGR-AEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEEC-ccCCCCEEEEEECCccCCCCc-EEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4789999 699999999999987665432 2221    2457999999999999999999999999888877754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.55  E-value=1.3e-13  Score=84.67  Aligned_cols=80  Identities=21%  Similarity=0.437  Sum_probs=58.6

Q ss_pred             CCccCCCCCcccc---cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC-CCCCeeEEEE
Q psy11132         10 PKLSPTNPERTLN---VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-ARHSGNYSCT   85 (243)
Q Consensus        10 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~   85 (243)
                      |.+...+.+..+.   +|+.+.|.|.+. |.|.+.+.|++++..+..........   ....|.|.++. .+|+|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~~~~~~~~~~---~~g~L~i~~~~~~~D~G~Y~C~   77 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEAR-GNPVPTYRWLRNGTEIDTESDYRYSL---IDGNLIISNPSEVKDSGRYQCL   77 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEee-ecCCCEEEEEECCeECccCCCceEEe---eCCeEEEccCCccCcCEEEEEE
Confidence            4444444444333   578999999995 88999999999999886543322211   14578898875 6999999999


Q ss_pred             EEeCCCcc
Q psy11132         86 VRNMVAED   93 (243)
Q Consensus        86 ~~~~~~~~   93 (243)
                      |.|..|..
T Consensus        78 A~N~~G~~   85 (94)
T cd05848          78 ATNSIGSI   85 (94)
T ss_pred             EEcCCCeE
Confidence            99999875

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.54  E-value=1.4e-13  Score=81.74  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=56.9

Q ss_pred             EEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe------eeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132         28 SLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV------DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        28 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      .|.|.+. |.|.|.++|+|+|..+....+......      ....+.|.|.+++..|+|.|+|.|.|..|..+..+.+.
T Consensus         2 ~i~~~v~-G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVR-GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeE-eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            3789984 899999999999999987654322211      12245799999999999999999999999988777665

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.54  E-value=4.1e-14  Score=83.36  Aligned_cols=76  Identities=21%  Similarity=0.376  Sum_probs=57.0

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      |.+...|+...+.+|++++|.|.+. +.|. ..+.|++++..+..           ....|.|.++ .+|+|.|+|.+.+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~-~~p~~~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGF-NSPEQNSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCC-CCCCCccEEEEECCEEeec-----------cCCeEEEeec-ccCCEEeEEECCC
Confidence            3455667777899999999999985 5454 47999999987732           1457899999 9999999999986


Q ss_pred             CCCcceeEEEEE
Q psy11132         89 MVAEDTQVQRLI  100 (243)
Q Consensus        89 ~~~~~~~~~~l~  100 (243)
                      .  ..+..+.|.
T Consensus        68 ~--~~S~~v~l~   77 (78)
T cd05752          68 S--SLSDPVHLE   77 (78)
T ss_pred             C--cCCCCEEEe
Confidence            4  333334443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.54  E-value=1e-13  Score=84.83  Aligned_cols=80  Identities=25%  Similarity=0.522  Sum_probs=59.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc-eeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~  192 (243)
                      ..+..|+++.|.|.+ .|.| +.+.|++ ++..+...............+.|.|.++..+|+|.|+|.|.|..|. ...+
T Consensus        10 ~~v~~G~~~~l~C~~-~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s   87 (92)
T cd04977          10 GEISVGESKFFLCQV-IGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT   87 (92)
T ss_pred             EEECCCCeEEEEEEe-EeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence            456789999999999 4776 4999997 5655554333333333344578999999999999999999998654 4566


Q ss_pred             EEEE
Q psy11132        193 SKLQ  196 (243)
Q Consensus       193 ~~l~  196 (243)
                      +.|.
T Consensus        88 v~l~   91 (92)
T cd04977          88 VNLK   91 (92)
T ss_pred             EEEE
Confidence            6654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.54  E-value=1.6e-13  Score=85.79  Aligned_cols=82  Identities=26%  Similarity=0.447  Sum_probs=57.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC----CCeeEEeeccceeEEEEe--ecCCCCCeeEEEEEEccCcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSIN--SVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|+++|..+...    .........+....+.+.  .+..+|+|.|+|.|.|..|.
T Consensus        11 ~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~   89 (100)
T cd07693          11 LIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE   89 (100)
T ss_pred             eEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence            557789999999999 69999999999999988752    111111111111222232  23689999999999999998


Q ss_pred             -eeeeEEEEE
Q psy11132        189 -ARYSSKLQV  197 (243)
Q Consensus       189 -~~~~~~l~v  197 (243)
                       ....+.|.|
T Consensus        90 ~~s~~~~l~v   99 (100)
T cd07693          90 AVSRNASLEV   99 (100)
T ss_pred             eecceEEEEe
Confidence             556666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.54  E-value=1.2e-13  Score=84.40  Aligned_cols=76  Identities=24%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeec--------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLD--------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      |+.+.|.|.+ .+.|.+.+.|++++..+.        ...++.+.    ....|.|.+++.+|+|.|+|.+.|..|....
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            7899999998 488888999999886431        12233221    1457999999999999999999999999888


Q ss_pred             EEEEEEEcC
Q psy11132         96 VQRLIVNVP  104 (243)
Q Consensus        96 ~~~l~v~~~  104 (243)
                      .+.|.|...
T Consensus        76 ~~~l~V~~~   84 (90)
T cd05726          76 KAYLEVTDV   84 (90)
T ss_pred             EEEEEEeec
Confidence            899998764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.54  E-value=6.4e-14  Score=84.23  Aligned_cols=78  Identities=35%  Similarity=0.565  Sum_probs=62.2

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      ....|+.+.|.|.+ .|.|.+.+.|++++..+.......   .......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         5 ~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           5 ARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             eccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccce---ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            35679999999999 588999999999998776443221   11224679999999999999999999999988877776


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      .|
T Consensus        81 ~v   82 (82)
T cd05856          81 DV   82 (82)
T ss_pred             eC
Confidence            54

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.54  E-value=1.2e-13  Score=84.36  Aligned_cols=77  Identities=31%  Similarity=0.504  Sum_probs=57.5

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeC----CEecCCCCCe--eEEe------eccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKD----GKPLSPRFPV--NVSD------LDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~----~~~~~~~~~~--~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      |+.+.|.|.+ .|.|.|.++|+++    +..+......  ....      .....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            6889999999 5999999999984    3433322111  1111      111236799999999999999999999999


Q ss_pred             ceeeeEEEEE
Q psy11132        188 QARYSSKLQV  197 (243)
Q Consensus       188 ~~~~~~~l~v  197 (243)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.54  E-value=6e-14  Score=80.74  Aligned_cols=68  Identities=21%  Similarity=0.406  Sum_probs=54.8

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.+.|+|+|.++....+..      ....|.|.++..+|+|.|+|.+.|..|......++.+
T Consensus         1 ~~~~c~v~-G~P~P~v~W~k~g~~l~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYY-GYPPPEVKWYKNGQLIVLNHTFK------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEE-EeCCCEEEEEECCEECCCCCEEc------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            36899995 89999999999999987643221      1457999999999999999999999997665555554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=4.8e-14  Score=82.24  Aligned_cols=70  Identities=33%  Similarity=0.557  Sum_probs=56.5

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+..... .   .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~-~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIA-EGLPTPEISWIKIGGELPADRT-K---FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCeECCCCce-e---EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999 6999999999999887654321 1   1123467999999999999999999999999888888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.53  E-value=2.8e-13  Score=83.23  Aligned_cols=86  Identities=23%  Similarity=0.385  Sum_probs=60.3

Q ss_pred             CCccCCCCCcccccC---CeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC-CCCCeeEEEE
Q psy11132         10 PKLSPTNPERTLNVG---ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-ARHSGNYSCT   85 (243)
Q Consensus        10 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~   85 (243)
                      |.+...+....+.+|   +.+.|.|.+. +.|.+.++|+++|..+..........   ....|.|.++. ..|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~~~~~~~~~~---~~g~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRAR-ASPPATYRWKMNGTEIKFAPESRYTL---VAGNLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEce-eCCCCEEEEEECCEECccCCCceEEE---ECCeEEEccCCccCcCEEEEEE
Confidence            444444555555444   6899999995 88889999999999886433222111   14578888765 5999999999


Q ss_pred             EEeCCCcc-eeEEEE
Q psy11132         86 VRNMVAED-TQVQRL   99 (243)
Q Consensus        86 ~~~~~~~~-~~~~~l   99 (243)
                      |+|..|.. +..+.|
T Consensus        78 A~N~~G~~~s~~a~l   92 (94)
T cd05850          78 AINRCGTVVSREANL   92 (94)
T ss_pred             EEcCcCcEEEEEEEE
Confidence            99999974 334443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=9.5e-14  Score=81.77  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=54.7

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecC---CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDN---SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.++|+|++.....   ..++..   ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAAT-GHPTPQIAWQKDGGTDFPAARERRMHV---MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecc-cccCCEEEEEeCCCccCCcccccceEE---ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            47999994 889999999999864322   122222   112457999999999999999999999998888887776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=1.4e-13  Score=79.22  Aligned_cols=68  Identities=21%  Similarity=0.436  Sum_probs=53.8

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      |+.+.|.|.+. |.|.|.|+|++++..+....+...     ....|.|.++  .|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAV-GAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEee-ecCCCEEEEEECCEECCCccceec-----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            68899999995 889999999999988765443221     1446888886  47999999999999987766554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=6.3e-14  Score=81.46  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=56.4

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. |.|.|.+.|++++..+..... ..   ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~-G~P~P~v~W~k~~~~~~~~~~-~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAE-GLPTPEVHWDRIDGPLSPNRT-KK---LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEee-EecCCeEEEEECCcCCCCCce-eE---EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46999994 889999999999987654322 11   122578999999999999999999999999888877765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.53  E-value=3.4e-13  Score=83.69  Aligned_cols=89  Identities=20%  Similarity=0.364  Sum_probs=67.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCC--CceEEEEee---eeceEEEEeecCCCC-Cee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNS--AALSITHVD---QYNSMLVIDSVSARH-SGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~~d-~G~   81 (243)
                      ||.+.. +....+.+|+.+.|.|.+. +.|.+ .+.|++++..+...  .++.+....   ...+.|.|.++..+| .|.
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~-g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIF-STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEc-ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence            677754 4566789999999999995 77877 69999999887653  344443321   123589999999955 899


Q ss_pred             EEEEEEeCCCcceeEEEE
Q psy11132         82 YSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l   99 (243)
                      |.|.|.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999987766654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.53  E-value=1.6e-13  Score=83.68  Aligned_cols=78  Identities=33%  Similarity=0.509  Sum_probs=57.5

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCC----EecCCCC-Ce-eEEee------ccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDG----KPLSPRF-PV-NVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~----~~~~~~~-~~-~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      |+.+.|.|.+ .|.|.|.++|+|++    ..+.... .. .....      ......|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            6789999999 69999999999964    2222111 11 11110      11235799999999999999999999999


Q ss_pred             ceeeeEEEEEE
Q psy11132        188 QARYSSKLQVK  198 (243)
Q Consensus       188 ~~~~~~~l~v~  198 (243)
                      ....++.|.|.
T Consensus        80 ~~~~sa~L~V~   90 (90)
T cd04974          80 PSHHSAWLTVL   90 (90)
T ss_pred             cccCCEEEEeC
Confidence            99888888763

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.53  E-value=1.3e-13  Score=81.33  Aligned_cols=71  Identities=32%  Similarity=0.493  Sum_probs=55.6

Q ss_pred             EEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeE--EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        123 TRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNV--SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       123 ~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      +.|.|.+. | .|.+.+.|++++..+........  .......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~-g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEAT-SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEcc-CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            46899995 6 89999999999998875443221  222234578999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.53  E-value=2e-13  Score=84.30  Aligned_cols=84  Identities=27%  Similarity=0.429  Sum_probs=61.5

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeec-----CCCCCeeEEEEEEe
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-----SARHSGNYSCTVRN   88 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~   88 (243)
                      ..+.+..+.+|+++.|.|.+. +.|.+.+.|+|+|..+............  ++.+.|.++     +..|.|.|+|.+.|
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecc-cCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            345567788999999999994 8888999999999988754332111111  345666665     68999999999999


Q ss_pred             C-CCcc-eeEEEEE
Q psy11132         89 M-VAED-TQVQRLI  100 (243)
Q Consensus        89 ~-~~~~-~~~~~l~  100 (243)
                      . .|.. +..+.|.
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            9 8864 5555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.52  E-value=2e-13  Score=80.64  Aligned_cols=72  Identities=26%  Similarity=0.451  Sum_probs=55.3

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc--eeEEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED--TQVQRLIVN  102 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~  102 (243)
                      ++|.|.+. +.|.+.++|+|+|..+.... ++.+.   .....|.|.+++.+|+|.|.|.+.|..|..  +..+.|.|.
T Consensus         1 v~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHID-GHPRPTYQWFRDGTPLSDGQGNYSVS---SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEee-ecCCCcEEEEECCEECCCCCccEEEe---CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            57999995 88888999999999886543 22221   124589999999999999999999999975  345566553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.52  E-value=1.4e-13  Score=97.70  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=83.6

Q ss_pred             CCCCCCCcEEEEEEeecCCC-----------CCEEEEEeCCEec--CCC-CC---e--eEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP-----------PLTIRWLKDGKPL--SPR-FP---V--NVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-----------~~~~~W~~~~~~~--~~~-~~---~--~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|+++.|.|.+. +.|           ...+.|++++...  ... ..   .  ...........|.|.+++.+|+
T Consensus        32 ~~v~eGe~v~L~C~~~-~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         32 VYAKFGDPMVLLCTGK-HYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             EEecCCCCEEEEcccc-ccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            4567999999999983 433           4589999987542  110 00   0  0111112246899999999999


Q ss_pred             eeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCcc-------cccccceEEeCCeeE
Q psy11132        176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYY-------SFEQDSWMIDNENYV  238 (243)
Q Consensus       176 g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~W~~~~~~~~  238 (243)
                      |.|+|.|.|..+....++.|.|..    .+....+..+..+.+.|...       ..+.++|+|||+.+.
T Consensus       111 G~Y~C~a~N~~~~~~~~i~L~V~~----~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~  176 (227)
T PHA02826        111 GIYICTISSGNICEESTIRLTFDS----GTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL  176 (227)
T ss_pred             EEEEEEEEECCcceEEEEEEEEec----CCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence            999999999888888888888752    12233455678888999753       236899999998764

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=2.1e-13  Score=82.72  Aligned_cols=79  Identities=25%  Similarity=0.419  Sum_probs=60.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|+++.|.|.+..|.|.+.+.|++++..+..........   ..+.|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   82 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERESAAA   82 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence            4567899999999974588999999999999887643221111   135799999999999999999999999764 444


Q ss_pred             EEE
Q psy11132        194 KLQ  196 (243)
Q Consensus       194 ~l~  196 (243)
                      .+.
T Consensus        83 ~l~   85 (86)
T cd05724          83 RLS   85 (86)
T ss_pred             EEE
Confidence            443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.52  E-value=2.7e-13  Score=82.89  Aligned_cols=84  Identities=20%  Similarity=0.333  Sum_probs=59.2

Q ss_pred             CCccCCCCCccccc---CCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecC-CCCCeeEEE
Q psy11132         10 PKLSPTNPERTLNV---GERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVS-ARHSGNYSC   84 (243)
Q Consensus        10 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C   84 (243)
                      |.+...+....+.+   |+.+.|.|.+. |.|.+.++|++++..+... .++..     .+..|.|.++. .+|+|.|+|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~-G~P~P~i~W~k~~~~i~~~~~~~~~-----~~g~L~I~~~~~~~D~G~Y~C   75 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRAR-ANPFPIYKWRKNNLDIDLTNDRYSM-----VGGNLVINNPDKYKDAGRYVC   75 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCc-cCCCCEEEEEECCEEccCCCCeEEE-----ECCEEEECcCCcCCCCEEEEE
Confidence            34444444443433   44899999994 8899999999999887532 23222     14679998885 689999999


Q ss_pred             EEEeCCCcc-eeEEEE
Q psy11132         85 TVRNMVAED-TQVQRL   99 (243)
Q Consensus        85 ~~~~~~~~~-~~~~~l   99 (243)
                      .|.|..|.. +..+.|
T Consensus        76 ~A~N~~G~~~s~~a~l   91 (93)
T cd05849          76 IVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEeCcceEEEccEEE
Confidence            999999874 334443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=2.7e-13  Score=79.67  Aligned_cols=73  Identities=30%  Similarity=0.563  Sum_probs=57.3

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+.+.|.|.+. +.|.+.+.|++ ++..+....+....    ...+|.|..++.+|.|.|+|.+.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKAR-GDPEPAIHWISPDGKLISNSSRTLVY----DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEcc-CcCCCEEEEEeCCCEEecCCCeEEEe----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            78999999994 88889999997 56555544333221    1467999999999999999999999998877776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.51  E-value=1.2e-13  Score=82.99  Aligned_cols=79  Identities=25%  Similarity=0.400  Sum_probs=61.8

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      .....|+++.|.|.+. +.|.+.+.|++++..+.......   .......|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus         4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   79 (82)
T cd05856           4 IARPVGSSVRLKCVAS-GNPRPDITWLKDNKPLTPTEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK   79 (82)
T ss_pred             eeccCCCeEEEEEEee-EeCCCcEEEEECCcCCcCCccce---ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence            3466799999999985 77888999999998775433221   1112468999999999999999999999998777776


Q ss_pred             EEE
Q psy11132         99 LIV  101 (243)
Q Consensus        99 l~v  101 (243)
                      |.|
T Consensus        80 v~v   82 (82)
T cd05856          80 VDV   82 (82)
T ss_pred             EeC
Confidence            653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.51  E-value=8.2e-14  Score=85.26  Aligned_cols=81  Identities=20%  Similarity=0.264  Sum_probs=61.4

Q ss_pred             CcccccCCeEEEEEEeeCC----CCCceeEEEECCeeecCC--CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         18 ERTLNVGERASLICSITKG----DIPLTIKWLKDGRYLDNS--AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ...+.+|+++.|.|.+.+.    .|.+.+.|||++..+...  ....+..   ....|.|.+++.+|+|.|+|.++|..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            4567899999999998532    577899999998764321  1111111   246899999999999999999999999


Q ss_pred             cceeEEEEEE
Q psy11132         92 EDTQVQRLIV  101 (243)
Q Consensus        92 ~~~~~~~l~v  101 (243)
                      .....+.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            8877776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.51  E-value=3.1e-13  Score=82.46  Aligned_cols=77  Identities=23%  Similarity=0.467  Sum_probs=57.1

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEEC----CeeecCCCceEEE--Ee------eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         24 GERASLICSITKGDIPLTIKWLKD----GRYLDNSAALSIT--HV------DQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~----~~~~~~~~~~~~~--~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      |+.+.|.|.+. +.|.|.+.|+++    +..+.........  ..      ......|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~-g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVY-SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEe-cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            78999999995 888899999984    4434322211111  10      01125799999999999999999999999


Q ss_pred             cceeEEEEEE
Q psy11132         92 EDTQVQRLIV  101 (243)
Q Consensus        92 ~~~~~~~l~v  101 (243)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9888888776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.51  E-value=1.9e-13  Score=80.15  Aligned_cols=72  Identities=29%  Similarity=0.549  Sum_probs=54.9

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v  197 (243)
                      +.|.|.+ .|.|.|.+.|++++..+...........  ..+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQL--RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEc--CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            3689999 6999999999999988763221111111  23569999999999999999999999975 56666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=1.6e-13  Score=79.36  Aligned_cols=69  Identities=29%  Similarity=0.471  Sum_probs=55.2

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      ++|.|.+. +.|.+.+.|+|++..+... +....    ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~-g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVG-GDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECc-cCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999994 8888999999998766442 33322    2567999999999999999999999998877777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.51  E-value=2e-13  Score=78.66  Aligned_cols=70  Identities=23%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|.|.+ .|.|+|++.|++++..+........  ..  ...|.|.++..+|+|.|+|.|.|..........+++
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeE-EEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            3689999 5999999999999998875432211  11  347999999999999999999998766655555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.51  E-value=2.6e-13  Score=80.43  Aligned_cols=70  Identities=17%  Similarity=0.339  Sum_probs=55.6

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..+.+..+.+|+++.|.|.+. |.|.+ .|.|+++|.++....       ....+.|.|..+  .|.|.|.|.|+|..|.
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAV-GPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEee-eecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            346678899999999999994 88888 799999999886411       111457888876  4789999999999986


Q ss_pred             c
Q psy11132         93 D   93 (243)
Q Consensus        93 ~   93 (243)
                      .
T Consensus        73 ~   73 (81)
T cd05749          73 T   73 (81)
T ss_pred             E
Confidence            4

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.50  E-value=4.1e-13  Score=79.28  Aligned_cols=73  Identities=30%  Similarity=0.537  Sum_probs=59.2

Q ss_pred             EEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .|.|.+ .|.|.|.+.|++++..+........... .....|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus         2 ~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEe-eecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            689999 5899999999999998875433222221 223579999999999999999999999999999888876

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>KOG3515|consensus

Probab=99.50  E-value=2.8e-13  Score=108.67  Aligned_cols=221  Identities=17%  Similarity=0.188  Sum_probs=142.1

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |......-...+.+|+.|.|.|.+..++|.+.+.|++.++.+.  .+..    ......|......++..+.|.|.+.|.
T Consensus         8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~c~a~ns   81 (741)
T KOG3515|consen    8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYA----TIADPTLVTTGDVRDTVAELNCRAFNS   81 (741)
T ss_pred             ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--cccc----cccCCceeeecchhhhhhhhhhhhccc
Confidence            3333333344789999999999997677778999999887665  1111    112567888888888889999999998


Q ss_pred             CCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEe-ecCCCCCEEEEEeCCEecCCCCC--e----eEEeec-c
Q psy11132         90 VAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV-THGDPPLTIRWLKDGKPLSPRFP--V----NVSDLD-S  160 (243)
Q Consensus        90 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~p~~~~~W~~~~~~~~~~~~--~----~~~~~~-~  160 (243)
                      .+. ......+.+..+|........ .....+..+.+.|.+ ..+.|.+.+.|..++........  .    ...... .
T Consensus        82 ~~~~~~~~~~l~v~~~pa~~~~~~e-~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t  160 (741)
T KOG3515|consen   82 VGMPSRCPMILDVDYPPACLPELGE-IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYT  160 (741)
T ss_pred             ccCceecceeeccccCccccccccc-hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceec
Confidence            665 445566777777665443332 445678899999944 35677889999988765432211  0    001101 1


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccC---cceeeeEEEEEEeecCCCCCe-------eeeeccceeeeccCcccc---cc
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTA---AQARYSSKLQVKGNLNRLPPS-------YTLVFSQASYMSTSYYSF---EQ  227 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~---g~~~~~~~l~v~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~---~~  227 (243)
                      ..+.+.+...+.++.|.|+|.|.|..   +.......+.+.  .......       -....++...+.|+...-   +.
T Consensus       161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~--~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~  238 (741)
T KOG3515|consen  161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVE--APCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQ  238 (741)
T ss_pred             cccceeeEEEEecCCceeEcccccccCccccccceeEeecc--cccccceecchhhcCcccccceEEEEehhhcCCcchh
Confidence            23567788888999999999999953   333333444433  1101111       123456777888854432   38


Q ss_pred             cceEEeCCeeEE
Q psy11132        228 DSWMIDNENYVY  239 (243)
Q Consensus       228 ~~W~~~~~~~~~  239 (243)
                      ++|+++....-+
T Consensus       239 ~~w~~~s~~~~~  250 (741)
T KOG3515|consen  239 QTWYKDSRPQSE  250 (741)
T ss_pred             hhhccccccchh
Confidence            999998766543

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.50  E-value=4.7e-13  Score=81.59  Aligned_cols=77  Identities=23%  Similarity=0.451  Sum_probs=56.7

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECC----eeecCCCc--eEEEEe------eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDG----RYLDNSAA--LSITHV------DQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~----~~~~~~~~--~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      |+.+.|.|.+. +.|.|.|+|+|++    ..+.....  ......      ......|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~-g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEe-CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            68899999995 8899999999963    33321111  111110      01235799999999999999999999999


Q ss_pred             cceeEEEEEE
Q psy11132         92 EDTQVQRLIV  101 (243)
Q Consensus        92 ~~~~~~~l~v  101 (243)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.50  E-value=2.2e-13  Score=81.66  Aligned_cols=77  Identities=29%  Similarity=0.391  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEe---c-CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKP---L-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~---~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      |+.+.|.|.+ .|.|.|.+.|++++..   + ...............+.|.|.++..+|+|.|.|.|.|..|.....+.|
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            7889999999 6999999999997421   1 111100000011123679999999999999999999999998888887


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      +|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            64

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.49  E-value=1.9e-13  Score=81.72  Aligned_cols=74  Identities=23%  Similarity=0.285  Sum_probs=56.9

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQV   96 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~   96 (243)
                      ...+.+|++++|.|.+..+.+...+.|+|++..+....         ....|.|.+++.+|+|.|+|.+.+..+. .+..
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~   78 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEP   78 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------CCceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence            34588999999999985456667899999997664211         1467999999999999999999988774 3444


Q ss_pred             EEEE
Q psy11132         97 QRLI  100 (243)
Q Consensus        97 ~~l~  100 (243)
                      +.|+
T Consensus        79 ~~i~   82 (83)
T cd05753          79 VSIT   82 (83)
T ss_pred             EEEE
Confidence            4443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.49  E-value=5.5e-13  Score=78.73  Aligned_cols=74  Identities=28%  Similarity=0.471  Sum_probs=59.4

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      +.|.|.+. +.|.+.+.|+|++..+.......+.... ....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~-g~P~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAE-GIPLPRLTWLKNGMDITPKLSKQLTLIA-NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEee-ecCCCEEEEEECCEECCCCCCccEEEeC-CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            46899995 8888999999999988765433332222 24579999999999999999999999998888888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.48  E-value=3.5e-13  Score=78.99  Aligned_cols=70  Identities=23%  Similarity=0.443  Sum_probs=55.1

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  101 (243)
                      ++|.|.+. |.|.+.+.|++++..+..  ..++...    ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus         1 a~l~C~~~-G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQL----RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEe-EecCCEEEEEECCEECccCCCCCEEEc----CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999995 889999999999988763  3333322    1457999999999999999999999987 466666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.48  E-value=5.1e-13  Score=78.87  Aligned_cols=72  Identities=25%  Similarity=0.421  Sum_probs=54.1

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCC---eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFP---VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      +.|.|.+..+.|.+.+.|++++..+.....   ..........+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999854578889999999988864221   111122234578999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.48  E-value=4e-13  Score=79.24  Aligned_cols=72  Identities=31%  Similarity=0.490  Sum_probs=54.9

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEE--EEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSI--THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      +.|.|.+.++.|.+.+.|+|++..+....+...  .........|.|.+++.+|.|.|+|.+.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999964388899999999998876543321  112223578999999999999999999999998665543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.48  E-value=8.9e-13  Score=80.94  Aligned_cols=68  Identities=26%  Similarity=0.494  Sum_probs=53.6

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCccee
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~  190 (243)
                      .|+.+.|.|.+ .|.|.|.++|+++|..+..........   ..+.|.|.++. .+|.|.|+|.|.|..|...
T Consensus        18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~---~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSL---IDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEe---eCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            58999999999 699999999999999886443222211   13568888875 6999999999999999774

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.48  E-value=2.4e-13  Score=83.20  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             CCCCCCCcEEEEEEeecC-----CCCCEEEEEeCCEecCCCC--CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHG-----DPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..+.+|+.+.|.|.+ .+     .|.+.+.||+++..+....  ......   ....|.|.++..+|+|.|+|.+.|..|
T Consensus         9 ~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           9 SYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            345689999999998 46     6888999999987643221  111111   136799999999999999999999999


Q ss_pred             ceeeeEEEEE
Q psy11132        188 QARYSSKLQV  197 (243)
Q Consensus       188 ~~~~~~~l~v  197 (243)
                      ..+.++.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            9888887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.47  E-value=1.5e-12  Score=79.64  Aligned_cols=91  Identities=22%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC--CceEEEEee---eeceEEEEeecCCCC-Cee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS--AALSITHVD---QYNSMLVIDSVSARH-SGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~~d-~G~   81 (243)
                      .||.+ .......+.+|+.+.|.|.+...+++..|.|.+++..+...  .++.+....   ...+.|+|.++...| .|.
T Consensus         1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            36777 44556778899999999999534444588999988776543  455554432   346899999998877 799


Q ss_pred             EEEEEEeCCCcceeEEEE
Q psy11132         82 YSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l   99 (243)
                      |.|.|.|..|.....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998777665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.47  E-value=2.9e-13  Score=78.92  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=55.7

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.|.|.+. +.|.+.+.|++++..+.... ...   ......|.|.+++.+|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 v~l~C~~~-g~P~p~v~W~k~~~~~~~~~-~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAE-GLPTPEISWIKIGGELPADR-TKF---ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEee-EecCCeEEEEECCeECCCCc-eeE---ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999995 88889999999988765432 111   122568999999999999999999999998888777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=4.5e-13  Score=80.71  Aligned_cols=77  Identities=26%  Similarity=0.442  Sum_probs=58.8

Q ss_pred             CCcEEEEEEeecCC--CCCEEEEEeCCEecCCCCCe----eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        120 GARTRVICGVTHGD--PPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       120 g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      |+.+.|.|.+ .+.  |.+.+.|++++..+......    .........+.|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus         1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            7899999999 577  88999999887655422111    1111122357899999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        194 KLQV  197 (243)
Q Consensus       194 ~l~v  197 (243)
                      .+.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            8766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.47  E-value=1.8e-12  Score=78.43  Aligned_cols=81  Identities=32%  Similarity=0.594  Sum_probs=63.1

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+..|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|.++..+|.|.|.|.+.|..|..+.++.|
T Consensus         5 ~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           5 AVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             EecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            34679999999999 58899999999999887654333222222234679999999999999999999999988777776


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.47  E-value=1.4e-12  Score=80.89  Aligned_cols=80  Identities=23%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCC--CCeeEEee---ccceeEEEEeecCCC-CCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAA-HSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~-d~g~y~C~~~n~~g  187 (243)
                      ..+..|+.+.|.|.+ .|.|.| .+.|++++..+...  .++.....   ....+.|.|.++..+ |.|.|.|.|.|..|
T Consensus        11 ~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          11 QYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             EEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            446789999999999 588888 69999999887653  23333221   122367999999984 48999999999999


Q ss_pred             ceeeeEEE
Q psy11132        188 QARYSSKL  195 (243)
Q Consensus       188 ~~~~~~~l  195 (243)
                      .....+.|
T Consensus        90 ~~~~~~~L   97 (98)
T cd05758          90 SGTAIISL   97 (98)
T ss_pred             cccEEEEe
Confidence            98877665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.45  E-value=1.3e-12  Score=78.03  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=55.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .|.+..+.+|+++.|.|.+. + +.+.+.|+++|.++.... ++..     ....|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~-~-~~~~i~W~~ng~~i~~~~~r~~~-----~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPK-S-NLARVVWKFDGKVLTPESAKYLL-----YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECC-C-CCCeEEEEECCEECCCCCceEEE-----ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            35677899999999999973 3 567999999999987653 3322     14569999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=8.8e-13  Score=78.99  Aligned_cols=77  Identities=31%  Similarity=0.371  Sum_probs=55.3

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCe---ee-cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGR---YL-DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      |+.+.|.|.+. +.|.+.+.|++++.   .+ .................|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVT-GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeecc-ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            78999999994 88888999999742   11 111110000011124689999999999999999999999988877776


Q ss_pred             EE
Q psy11132        100 IV  101 (243)
Q Consensus       100 ~v  101 (243)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            54

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.45  E-value=9.7e-13  Score=75.84  Aligned_cols=67  Identities=19%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      +.|.|.+. |.|.|.+.|+|++.++...... .. .  ...+|.|.+++.+|+|.|+|.+.+..........
T Consensus         1 ~~l~c~v~-g~P~P~v~W~kdg~~l~~~~~~-~~-~--~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~   67 (72)
T cd07702           1 YRLTPKVK-AFPAPEVIWLKDGLPAAEKCSR-YH-V--DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT   67 (72)
T ss_pred             CeEEeeEE-EcCCCeEEEEECCEECCCCCcE-EE-e--CCCEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence            36899995 8899999999999988764221 11 1  1457999999999999999999997655444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.45  E-value=2.6e-12  Score=77.08  Aligned_cols=78  Identities=23%  Similarity=0.418  Sum_probs=57.2

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe---eEEeeccceeEEEEeecCCCCCeeEEEEEEccCc--ceeeeEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA--QARYSSK  194 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g--~~~~~~~  194 (243)
                      |+++.|.|.+ .+.|.+.+.|++.+.........   .........+.|.|.+++.+|+|.|.|.|.|..+  ....++.
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999999 58889999999877643321111   1111122357899999999999999999999876  5667777


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      ++|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.44  E-value=2e-12  Score=79.78  Aligned_cols=79  Identities=29%  Similarity=0.438  Sum_probs=57.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec-----CCCCCeeEEEEEEcc-Ccc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-----SAAHSGEYTCVASNT-AAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~  188 (243)
                      ..+..|+++.|.|.+ .|.|.+.+.|+++|..+............  .+.+.|..+     ..+|.|.|.|.|.|. .|.
T Consensus         9 ~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           9 IVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             eEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            445679999999999 68999999999999988754331111111  234556555     578999999999999 887


Q ss_pred             e-eeeEEEE
Q psy11132        189 A-RYSSKLQ  196 (243)
Q Consensus       189 ~-~~~~~l~  196 (243)
                      . +..+.|.
T Consensus        86 ~~s~~~~l~   94 (95)
T cd05722          86 IVSRTARLT   94 (95)
T ss_pred             EEEeeeEEe
Confidence            6 4455554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.44  E-value=3e-12  Score=77.45  Aligned_cols=81  Identities=27%  Similarity=0.482  Sum_probs=62.5

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      .+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|.|.|.|.+.+..+....++.|
T Consensus         5 ~~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           5 AVPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             EecCCCcEEEEEEcC-CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            466899999999995 7788899999999887654433322222224679999999999999999999998887777766


Q ss_pred             EE
Q psy11132        100 IV  101 (243)
Q Consensus       100 ~v  101 (243)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.44  E-value=8.6e-13  Score=79.70  Aligned_cols=77  Identities=27%  Similarity=0.480  Sum_probs=60.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|++++|.|.+..+.|.+.+.|++++..+....       ......|.|.+++.+|+|.|.|.+.|..+....
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            4455688999999999985456778999999986653321       112568999999999999999999999888776


Q ss_pred             EEEE
Q psy11132         96 VQRL   99 (243)
Q Consensus        96 ~~~l   99 (243)
                      .+.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            6654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.44  E-value=1.7e-12  Score=79.69  Aligned_cols=83  Identities=18%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--------eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--------RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+++.+.+|+++.|.|.+. +.|.+.+.|++.+        .......++..........+|+|.+++.+|+|.|.|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~-~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEe-cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            4567899999999999995 7788899998632        222233455443322345789999999999999999998


Q ss_pred             eCCCcceeEEEEE
Q psy11132         88 NMVAEDTQVQRLI  100 (243)
Q Consensus        88 ~~~~~~~~~~~l~  100 (243)
                      +.... +....|.
T Consensus        83 t~~~~-~~~~~l~   94 (95)
T cd07701          83 TMPVK-TSKAYLT   94 (95)
T ss_pred             eecCc-cEEEEEE
Confidence            74333 4444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.43  E-value=4e-12  Score=77.80  Aligned_cols=72  Identities=15%  Similarity=0.400  Sum_probs=55.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ..+..+.+|+++.|.|.+. +.|.+.+.|++++..+        ....++...........|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~-g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVK-EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEEe-CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            4567899999999999995 7778899999877532        122333333333335799999999999999999998


Q ss_pred             e
Q psy11132         88 N   88 (243)
Q Consensus        88 ~   88 (243)
                      .
T Consensus        83 t   83 (95)
T cd05882          83 T   83 (95)
T ss_pred             e
Confidence            6

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.43  E-value=1.7e-12  Score=76.64  Aligned_cols=70  Identities=24%  Similarity=0.452  Sum_probs=52.5

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCC----ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSA----ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      +.|.|.+..+.|.+.+.|++++..+....    ++... .......|.|.+++..|+|.|+|.+.|..|..+.++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            46999986456778999999998885422    12221 122347899999999999999999999998766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.43  E-value=2.5e-12  Score=78.61  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=54.5

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCcceee-eEEE
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL  195 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~-~~~l  195 (243)
                      .|..+.|.|.+ .|.|.|.++|++++..+.........    ..+.|.|.++. .+|+|.|.|.|.|..|.... .+.|
T Consensus        18 ~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~~~~~~~----~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          18 TEGKVSVNCRA-RANPFPIYKWRKNNLDIDLTNDRYSM----VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             cCCeEEEeCcC-ccCCCCEEEEEECCEEccCCCCeEEE----ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            35689999999 69999999999999887533222211    13678898875 68999999999999997643 3443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.43  E-value=1.6e-12  Score=78.26  Aligned_cols=77  Identities=18%  Similarity=0.433  Sum_probs=57.7

Q ss_pred             CCeEEEEEEeeCCC--CCceeEEEECCeeecCCCc----eEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         24 GERASLICSITKGD--IPLTIKWLKDGRYLDNSAA----LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        24 g~~~~l~C~~~~~~--~~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      |+.+.|.|.+. +.  |.+.+.|.+++..+.....    ..........+.|.|.+++.+|+|.|+|.+.|..+..+.+.
T Consensus         1 Ge~~~L~C~~~-g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVL-TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEE-eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            78999999996 66  7789999987765432211    11111122357899999999999999999999998887777


Q ss_pred             EEEE
Q psy11132         98 RLIV  101 (243)
Q Consensus        98 ~l~v  101 (243)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            7765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.42  E-value=8.1e-13  Score=77.81  Aligned_cols=58  Identities=22%  Similarity=0.532  Sum_probs=48.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+.+|++++|.|.+ .+.|. ..+.|++++..+...           ...|.|.++ .+|+|.|+|.|.|.
T Consensus        10 ~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          10 TTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence            567899999999999 46664 579999999887321           357889999 99999999999885

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.42  E-value=4.6e-12  Score=77.80  Aligned_cols=70  Identities=23%  Similarity=0.391  Sum_probs=53.2

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCcceee
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ..|+.+.|.|.+ .|.|.+.++|+++|..+..........   ..+.|.|.++. ..|.|.|+|.|.|..|....
T Consensus        17 ~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          17 SPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTL---VAGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEE---ECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            346789999999 699999999999999886432211111   13568887755 58999999999999997643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=1.7e-12  Score=78.88  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=58.7

Q ss_pred             cccccCCeEEEEEEeeCCC----CCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         19 RTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      ..+.+|+++.|.|...++.    |.+.+.|+|++.++........     ....|.|.+++.+|+|.|+|.+.+..+...
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            4577899999999875332    5679999999998876543321     367899999999999999999999887654


Q ss_pred             eEEEE
Q psy11132         95 QVQRL   99 (243)
Q Consensus        95 ~~~~l   99 (243)
                      ..+..
T Consensus        80 ~~~t~   84 (92)
T cd05757          80 YNVTR   84 (92)
T ss_pred             EEEEE
Confidence            44433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.42  E-value=2.2e-12  Score=76.45  Aligned_cols=67  Identities=19%  Similarity=0.405  Sum_probs=53.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ..+..|+.+.|.|.+ .|.|.| .+.|+++|..+....       ....+.|.|..+  .|.|.|.|.|.|..|....
T Consensus         8 ~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           8 LSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             eEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            557889999999999 699999 799999999886411       112357888766  5789999999999997643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.41  E-value=2.5e-12  Score=75.97  Aligned_cols=67  Identities=30%  Similarity=0.565  Sum_probs=49.3

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC----CCCeeEEEEEEccCcceee
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~  191 (243)
                      +.|.|.+ .|.|.|.++|++++..+......... .....+.|.|..+..    +|+|.|.|.|.|..|....
T Consensus         1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~-~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVT-MKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEE-EeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4689999 69999999999999987543221111 112256788887753    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.40  E-value=8.2e-12  Score=74.95  Aligned_cols=78  Identities=17%  Similarity=0.392  Sum_probs=55.4

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCce--EEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCC--cceeEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAAL--SIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVA--EDTQVQR   98 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~   98 (243)
                      |++++|.|.+. +.|.+.+.|++.++........  ... ......+.|+|.+++.+|+|.|.|.+.+...  ....++.
T Consensus         1 Ge~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQ-GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEE-CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            78999999996 6778899999877643221100  000 1112357899999999999999999998766  4566666


Q ss_pred             EEEE
Q psy11132         99 LIVN  102 (243)
Q Consensus        99 l~v~  102 (243)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            6664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.40  E-value=2.5e-12  Score=78.16  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             CCCCCCcEEEEEEeecCC----CCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        116 GLPEGARTRVICGVTHGD----PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      .+..|....|.|....+.    |.+.+.|++++..+........     ..+.|.|.++..+|+|.|+|.|.|..+....
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            456799999999764332    5789999999999876543221     3578999999999999999999999887766


Q ss_pred             eEEEEEE
Q psy11132        192 SSKLQVK  198 (243)
Q Consensus       192 ~~~l~v~  198 (243)
                      .++..+.
T Consensus        81 ~~t~t~~   87 (92)
T cd05757          81 NVTRTIS   87 (92)
T ss_pred             EEEEEEE
Confidence            6555443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.39  E-value=2.5e-12  Score=77.65  Aligned_cols=74  Identities=27%  Similarity=0.528  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|++++|.|.+..+.|.+.+.|++++..+....       ....+.|.|.++..+|+|.|.|.|.|..|....++.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~   83 (85)
T cd05754          11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT   83 (85)
T ss_pred             eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence            4567899999999985457888999999887654321       112467999999999999999999999998887766


Q ss_pred             E
Q psy11132        195 L  195 (243)
Q Consensus       195 l  195 (243)
                      |
T Consensus        84 l   84 (85)
T cd05754          84 L   84 (85)
T ss_pred             E
Confidence            5

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.39  E-value=4e-12  Score=74.93  Aligned_cols=67  Identities=25%  Similarity=0.476  Sum_probs=48.0

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC----CCCeeEEEEEEccCcceee
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~  191 (243)
                      +.|.|.+ .|.|.|+++|++++..+........ ......+.|.|..+..    .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~-~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKV-TMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCE-EEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4789999 6999999999999998743222111 1112245677776654    3789999999999997654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.38  E-value=4.3e-12  Score=74.94  Aligned_cols=65  Identities=25%  Similarity=0.507  Sum_probs=48.4

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC----CCCeeEEEEEEeCCCcc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA----RHSGNYSCTVRNMVAED   93 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~   93 (243)
                      +.|.|.+. |.|.+.++|+|++..+.......+.. ....+.|.|.++..    +|+|.|+|.|.|..|..
T Consensus         1 i~l~C~~~-G~P~P~v~W~k~g~~l~~~~~~~~~~-~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAK-GNPPPTFSWTRNGTHFDPEKDPRVTM-KPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCc-ccCCCeEEEEECCeECCCCCCCCEEE-eCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            47999995 88999999999999875433222221 12256788888754    68999999999999864

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.38  E-value=8.1e-12  Score=73.61  Aligned_cols=65  Identities=28%  Similarity=0.446  Sum_probs=47.5

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCC--CCCeeEEeeccceeEEEEeecC----CCCCeeEEEEEEccCcceee
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVS----AAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~g~~~~  191 (243)
                      +.|.|.+ .|.|.|.++|++++..+..  ......   ....+.|.|..+.    .+|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~---~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSM---RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEE---eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4689999 6999999999999987642  222222   1124678888764    24689999999999997643

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.36  E-value=6.7e-12  Score=76.45  Aligned_cols=82  Identities=23%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc--eEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC-c
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-E   92 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~   92 (243)
                      +....+.+|+.+.|.|.+. + |.+.+.|++++..+.....  .....   ....|.|.+++.+|+|.|+|.+.+..+ .
T Consensus         3 ~~~~~v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPK-S-NLASVVWLFQGGPLQRKEEPEERLLV---TEDGLLIRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             ceEEEEECCCcEEEEEeCC-C-CCceEEEEECCcccccccCcCceEEE---cCCCEEEccCCHHHCEEEEEEEecCccce
Confidence            3456688999999999984 5 6679999999987655321  11111   134599999999999999999986544 4


Q ss_pred             ceeEEEEEEE
Q psy11132         93 DTQVQRLIVN  102 (243)
Q Consensus        93 ~~~~~~l~v~  102 (243)
                      ...++.|.|.
T Consensus        78 ~~~~~~l~V~   87 (89)
T cd04979          78 TLATYSLNVL   87 (89)
T ss_pred             eEeEEEEEEe
Confidence            5666777664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.36  E-value=9.6e-12  Score=73.29  Aligned_cols=65  Identities=26%  Similarity=0.508  Sum_probs=46.9

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC----CCCeeEEEEEEeCCCcc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA----RHSGNYSCTVRNMVAED   93 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~   93 (243)
                      +.|.|.+ .|.|.|.++|+|++..+......... .....+.|.|..+..    .|.|.|+|.|.|..|..
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~-~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVT-MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA   69 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEE-EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence            4799999 48899999999999887432222111 112246788877764    37899999999999874

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.36  E-value=1.1e-11  Score=75.77  Aligned_cols=80  Identities=25%  Similarity=0.464  Sum_probs=56.2

Q ss_pred             CCccCCCCCcccc---cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC-CCCeeEEEE
Q psy11132         10 PKLSPTNPERTLN---VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNYSCT   85 (243)
Q Consensus        10 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~   85 (243)
                      |.+...+.+..+.   .|+.+.|.|.+. +.|.+.++|++++..+..........   ....|.|.++.. .|+|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~-g~p~p~i~W~k~~~~l~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~   77 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRAR-GSPPPTYRWLMNGTEIDDEPDSRYSL---VGGNLVISNPSKAKDAGRYQCL   77 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeee-EcCCCEEEEEECCEECCCCCCCCEEE---ECCEEEEecCCccCCCEEEEEE
Confidence            3444444444443   346799999995 77888999999998884322222111   145788988874 899999999


Q ss_pred             EEeCCCcc
Q psy11132         86 VRNMVAED   93 (243)
Q Consensus        86 ~~~~~~~~   93 (243)
                      +.|..|..
T Consensus        78 a~N~~G~~   85 (91)
T cd04967          78 ASNIVGTV   85 (91)
T ss_pred             EEcCCCEE
Confidence            99998863

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.36  E-value=1.9e-11  Score=74.76  Aligned_cols=80  Identities=25%  Similarity=0.337  Sum_probs=60.7

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCC--CCeeEEee---ccceeEEEEeecCCCC-CeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAAH-SGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g  187 (243)
                      ..+.+|+++.|.|.+. +.| +..+.|.+.+..+...  .++.+...   .+..+.|.|.++...| .|.|.|.|.|..|
T Consensus        11 ~~~~~G~~~~L~C~~~-s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          11 QYAVRGERGKVKCFIG-STPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             EEEeCCCcEEEEEEEc-cCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            5567999999999995 555 5578998887766543  33443332   2456889999998767 7899999999999


Q ss_pred             ceeeeEEE
Q psy11132        188 QARYSSKL  195 (243)
Q Consensus       188 ~~~~~~~l  195 (243)
                      .....+.|
T Consensus        90 ~d~~~i~L   97 (98)
T cd05898          90 SGTAIIQL   97 (98)
T ss_pred             cceEEEEe
Confidence            99877765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=6.1e-12  Score=75.24  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=53.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+.+|+.++|.|.+..+.+.+.+.|++++..+...         ...+.|.|.+++.+|+|.|.|.+.+..+..
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            457889999999998545677899999999866421         124679999999999999999999988743

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.35  E-value=4.5e-12  Score=75.36  Aligned_cols=69  Identities=28%  Similarity=0.370  Sum_probs=50.0

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCC--------CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSP--------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  193 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~  193 (243)
                      +.|.|.+ .|.|.|.+.|++++.....        ..+...    ...+.|.|.++..+|+|.|.|.|.|..|.. +..+
T Consensus         1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL----LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEE----ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence            4789999 5999999999996442211        111111    124679999999999999999999999976 4555


Q ss_pred             EEE
Q psy11132        194 KLQ  196 (243)
Q Consensus       194 ~l~  196 (243)
                      .|.
T Consensus        76 ~l~   78 (79)
T cd05734          76 VLT   78 (79)
T ss_pred             EEe
Confidence            554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.35  E-value=1.4e-11  Score=72.62  Aligned_cols=63  Identities=24%  Similarity=0.531  Sum_probs=46.7

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecC--CCceEEEEeeeeceEEEEeecC----CCCCeeEEEEEEeCCCcc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVS----ARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~   93 (243)
                      +.|.|.+. |.|.|.++|+|++..+..  ..++...   .....|.|..+.    .+|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~-G~P~P~v~W~k~g~~~~~~~~~~~~~~---~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           1 IIIECEAK-GNPVPTFQWTRNGKFFNVAKDPRVSMR---RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             CEEEEecc-ccCCCEEEEEECCEEccCcCCCcEEEe---CCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            46999994 889999999999987642  3333321   125678888764    246999999999999964

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>PHA03376 BARF1; Provisional

Probab=99.35  E-value=3.2e-10  Score=75.48  Aligned_cols=125  Identities=23%  Similarity=0.350  Sum_probs=77.9

Q ss_pred             CcccccCCeEEEEEEeeC--CCCCceeEEEECC----eee---------cC----CCceEEEEeeeeceEEEEeecCCCC
Q psy11132         18 ERTLNVGERASLICSITK--GDIPLTIKWLKDG----RYL---------DN----SAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~----~~~---------~~----~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      .+.+..|+.+.|+|....  ..+...|+|+|.+    ..+         .+    ..+..+.. +.++.+|.|.+++.+|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~-~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-SANTFFLVVTAANISH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe-cCCeEEEEEEeeeecC
Confidence            567888999999998752  2345699999942    211         11    11111111 1246789999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  145 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  145 (243)
                      .|+|+|.++......-..-.|.+..|-........ .....-+..++.|.+ +|.|.|.++|..+..
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~-~dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~  163 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTV-NAFPHPHVQWLMPEG  163 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeeecceEEEEecc-ccCCCCCeeEEEEec-CCcCCchheeccccC
Confidence            99999999875544333333443332222211111 112235777899995 899999999996543

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.33  E-value=2.6e-11  Score=74.14  Aligned_cols=70  Identities=27%  Similarity=0.488  Sum_probs=52.6

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEccCcceee
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~~  191 (243)
                      ..|..+.|.|.+ .|.|.+.++|++++..+..........   ....|.|.++.. +|+|.|+|.|.|..|....
T Consensus        17 ~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          17 SDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSL---VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEE---ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            345789999999 588999999999999885332221111   135688887764 8999999999999997643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.32  E-value=1.4e-11  Score=73.24  Aligned_cols=69  Identities=30%  Similarity=0.424  Sum_probs=50.4

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeec--------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-eeEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLD--------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQ   97 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~   97 (243)
                      ++|.|.+. |.|.|.+.|++++....        ...++...    ...+|.|.+++.+|+|.|.|.|.|..|.. +..+
T Consensus         1 v~l~C~~~-G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSAE-GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeCe-EeCCCEEEEEECCCccccccccccccCCCEEEe----cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence            57999995 88989999999753221        11222221    25689999999999999999999998874 5555


Q ss_pred             EEE
Q psy11132         98 RLI  100 (243)
Q Consensus        98 ~l~  100 (243)
                      .|.
T Consensus        76 ~l~   78 (79)
T cd05734          76 VLT   78 (79)
T ss_pred             EEe
Confidence            554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.31  E-value=1.2e-11  Score=74.98  Aligned_cols=73  Identities=27%  Similarity=0.324  Sum_probs=56.9

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      +...+.+|+.+.|.|....+.|.+.+.|++++..+  ....+..   .....+.|.|.+++.+|+|.|+|.|++....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~---~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF---VSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE---EeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            34668899999999998889999999999998754  2222222   1223578999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.30  E-value=1.3e-11  Score=74.80  Aligned_cols=72  Identities=26%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+.+|+.+.|.|....|.|.+.+.|++++..+.  ...+....   ...+.|.|.+++.+|+|.|.|.|.|.....
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~---~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS---QTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe---CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4577899999999888899999999999987542  22222221   225789999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.29  E-value=2.6e-11  Score=73.79  Aligned_cols=84  Identities=17%  Similarity=0.288  Sum_probs=58.9

Q ss_pred             CcccccCCeEEEEEEeeC----------CCCCceeEEEECCeeecCCCceEE--EEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         18 ERTLNVGERASLICSITK----------GDIPLTIKWLKDGRYLDNSAALSI--THVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~----------~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ...+.+|+++.|.|....          ......+.|+|++..+........  .........|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            456889999999998621          222348999999755544332111  12222367899999999999999999


Q ss_pred             EEeCCCcceeEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIV  101 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v  101 (243)
                      ++|........+.|+|
T Consensus        89 ~rN~t~C~~~~i~l~V  104 (104)
T cd05896          89 LRNSTYCMKVSMSLTV  104 (104)
T ss_pred             ECCCCcceEEEEEEEC
Confidence            9998876666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.28  E-value=4.6e-11  Score=73.36  Aligned_cols=80  Identities=18%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--------ecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--------PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++.+.        ......+............|.|.+++.+|+|.|.|.+.+..
T Consensus         7 v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~   85 (95)
T cd07701           7 VTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP   85 (95)
T ss_pred             EEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence            457899999999999 588999999986322        11122223222222345789999999999999999999843


Q ss_pred             cceeeeEEEE
Q psy11132        187 AQARYSSKLQ  196 (243)
Q Consensus       187 g~~~~~~~l~  196 (243)
                      + ......|.
T Consensus        86 ~-~~~~~~l~   94 (95)
T cd07701          86 V-KTSKAYLT   94 (95)
T ss_pred             C-ccEEEEEE
Confidence            3 34445544

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.28  E-value=5.4e-11  Score=72.81  Aligned_cols=80  Identities=16%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++..+.        ...+............|.|.++..+|+|.|+|.+... 
T Consensus         7 ~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-   84 (95)
T cd05882           7 ETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-   84 (95)
T ss_pred             EEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence            457789999999999 588999999998775431        1112222222233578999999999999999999883 


Q ss_pred             cceeeeEEEE
Q psy11132        187 AQARYSSKLQ  196 (243)
Q Consensus       187 g~~~~~~~l~  196 (243)
                      -...+.+++.
T Consensus        85 ~~~~~~~~~~   94 (95)
T cd05882          85 PVRTAKATVT   94 (95)
T ss_pred             ccccEEEEEE
Confidence            2333444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.27  E-value=1.1e-10  Score=72.02  Aligned_cols=83  Identities=17%  Similarity=0.346  Sum_probs=56.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+...+.+|++++|.|.+. +.+.+.+.|++.+..+        ....++...........|+|.+++.+|+|.|.|.+.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVK-NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             CCcEEEcCCCCEEEEEEEC-CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            4567789999999999985 6667799998633211        112344332222235689999999999999999998


Q ss_pred             eCCCcceeEEEEE
Q psy11132         88 NMVAEDTQVQRLI  100 (243)
Q Consensus        88 ~~~~~~~~~~~l~  100 (243)
                      .... ......|.
T Consensus        83 ~~~~-~~~~~~~~   94 (95)
T cd05717          83 TMPV-QTAKATVT   94 (95)
T ss_pred             cCCC-ceEEEEEE
Confidence            6543 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=7.5e-11  Score=70.51  Aligned_cols=66  Identities=23%  Similarity=0.378  Sum_probs=52.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+..|+++.|.|.+ .+ +.+++.|+++|..+..........    ...|.|.+++.+|+|.|+|.|.+..
T Consensus         6 ~~v~~G~~v~L~C~~-~~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           6 RTFKLGNNAELKCSP-KS-NLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEEECCCCEEEEEEC-CC-CCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            456789999999997 34 678999999999987653222221    3468999999999999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.25  E-value=1.2e-10  Score=70.86  Aligned_cols=77  Identities=18%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCe--eec----CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe-CCC
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGR--YLD----NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN-MVA   91 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~   91 (243)
                      +.+.+|+++.|.|..  +.|.+.+.|++.+.  ...    ...+...     ....|.|.+++.+|+|.|+|.+.+ ..+
T Consensus         6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           6 VYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCe
Confidence            457889999999996  46778999998432  211    1122221     245699999999999999999984 555


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                      .....+.|.|.
T Consensus        79 ~~~~~~~l~v~   89 (91)
T cd05871          79 QTLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEEe
Confidence            45556677665

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.25  E-value=1.2e-10  Score=70.16  Aligned_cols=78  Identities=24%  Similarity=0.376  Sum_probs=56.8

Q ss_pred             CCcEEEEEEeecCCC--CCEEEEEeCCEecCCCC-----CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        120 GARTRVICGVTHGDP--PLTIRWLKDGKPLSPRF-----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       120 g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      |+++.|.|.+. +.+  ...+.|...+.......     ...........+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         1 Ge~~~L~C~~~-~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTAR-TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEE-eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            78999999995 544  56889998776432111     00111112235789999999999999999999999988888


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            888775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.25  E-value=1.1e-10  Score=68.35  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+.|+|....+.|++.+.||+++..+.......... .....+.|.|.....+|++.|+|.|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            368999998999999999999999997542111000 01124679998888899999999999998754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.24  E-value=2.7e-11  Score=68.94  Aligned_cols=63  Identities=32%  Similarity=0.627  Sum_probs=46.0

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeee-ceEEEEeecCCCCCeeEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY-NSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      |+.++|.|.+....+...+.|++++................. ...|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            789999999944677789999999876654333222221111 123999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.24  E-value=1.1e-10  Score=70.30  Aligned_cols=79  Identities=22%  Similarity=0.396  Sum_probs=55.6

Q ss_pred             CCeEEEEEEeeCC-CCCceeEEEECCeeecC---CC--ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         24 GERASLICSITKG-DIPLTIKWLKDGRYLDN---SA--ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        24 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~---~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      |+++.|.|.+.+. .+...+.|.+.+.....   ..  +..........+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            7899999999622 33468899987764321   11  111111122357899999999999999999999888777777


Q ss_pred             EEEEE
Q psy11132         98 RLIVN  102 (243)
Q Consensus        98 ~l~v~  102 (243)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.24  E-value=2.3e-10  Score=69.51  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=66.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCeeEEee----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+..|+.+.|.|.+ .++|+|+ +.|.+++..+...........    ..+.+.|.+..+..++.|.|+|.|.|..++.
T Consensus        13 ~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          13 IFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             EEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            457789999999999 6999987 999999886654433222222    2356889999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy11132        190 RYSSKLQVK  198 (243)
Q Consensus       190 ~~~~~l~v~  198 (243)
                      +.++.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            988888875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00409 IG Immunoglobulin

Probab=99.24  E-value=4.4e-10  Score=67.75  Aligned_cols=82  Identities=30%  Similarity=0.606  Sum_probs=62.3

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      ...+.+|+++.|.|.+. +.+...+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        3 SVTVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            45678899999999996 556779999998 77776445544443322 4789999999999999999999777765555


Q ss_pred             EEEEE
Q psy11132         97 QRLIV  101 (243)
Q Consensus        97 ~~l~v  101 (243)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

>smart00410 IG_like Immunoglobulin like

Probab=99.24  E-value=4.4e-10  Score=67.75  Aligned_cols=82  Identities=30%  Similarity=0.606  Sum_probs=62.3

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      ...+.+|+++.|.|.+. +.+...+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        3 SVTVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            45678899999999996 556779999998 77776445544443322 4789999999999999999999777765555


Q ss_pred             EEEEE
Q psy11132         97 QRLIV  101 (243)
Q Consensus        97 ~~l~v  101 (243)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.24  E-value=4.9e-11  Score=72.20  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=58.9

Q ss_pred             CCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCee-ecCCCceEEEEeeeeceEEEEeecCCCCCe-eEEEEE
Q psy11132         10 PKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRY-LDNSAALSITHVDQYNSMLVIDSVSARHSG-NYSCTV   86 (243)
Q Consensus        10 p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~   86 (243)
                      |.+... .+.+.+.+|+.+.|.|....+.|.+.|.|++++.. +....++.+.    .++.|.|.+++.+|.| .|.|.|
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a   78 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHA   78 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEE
Confidence            344433 45678999999999998657999999999987654 3333443322    2578999999999999 899999


Q ss_pred             EeCCC
Q psy11132         87 RNMVA   91 (243)
Q Consensus        87 ~~~~~   91 (243)
                      .+...
T Consensus        79 ~~~~~   83 (95)
T cd05845          79 HFPGL   83 (95)
T ss_pred             Ecccc
Confidence            98654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.22  E-value=1.5e-10  Score=65.52  Aligned_cols=63  Identities=51%  Similarity=0.822  Sum_probs=50.1

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +|+++.|.|.+ .+.+.+.+.|++++..+...  ..   .......|.|.++..+|+|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~--~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPES--NR---LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECCCC--CE---EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999997 68888999999999887721  11   112246799999999999999999998754

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.21  E-value=1.9e-10  Score=67.25  Aligned_cols=66  Identities=12%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEE-eeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-VDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ++|+|...++.|++.|+||+++.++.......... .-...+.|.+.....+|.+.|+|.|.|+.+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            78999998899999999999999986532111110 0012457999988899999999999998775

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.21  E-value=1.1e-10  Score=71.02  Aligned_cols=79  Identities=27%  Similarity=0.328  Sum_probs=57.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc-ceee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARY  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~~  191 (243)
                      ..+..|+.+.|.|.+ .+ |.+.+.|++++..+.....  .....   ....|.|.+++.+|+|.|.|.|.+..+ ....
T Consensus         6 ~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           6 VTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLV---TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             EEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEE---cCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            345789999999998 45 7789999999987665421  11111   124488999999999999999997654 4455


Q ss_pred             eEEEEEE
Q psy11132        192 SSKLQVK  198 (243)
Q Consensus       192 ~~~l~v~  198 (243)
                      +..|.|.
T Consensus        81 ~~~l~V~   87 (89)
T cd04979          81 TYSLNVL   87 (89)
T ss_pred             EEEEEEe
Confidence            6666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.19  E-value=1.9e-10  Score=65.01  Aligned_cols=63  Identities=37%  Similarity=0.631  Sum_probs=49.2

Q ss_pred             cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +|+.+.|.|.+ .+.+.+.+.|++++..+..  ...   .......|.|.+++..|+|.|+|.+.+..+
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNR---LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCE---EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58899999997 4777789999999887762  111   112256899999999999999999987643

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.19  E-value=9.5e-11  Score=71.30  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCeeecC--------------CCceEEEE--eeeeceEEEEeecCCCCCeeEE
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDN--------------SAALSITH--VDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .+.+|++|+|+|.++ +.+.+.+.|++++.....              ..++....  ...+...|+|.+++.+|+|.|.
T Consensus         3 ~~~~G~~VtL~C~~s-~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEeC-CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            467899999999985 667789999976633211              11111111  1223568999999999999999


Q ss_pred             EEEEeCCCc
Q psy11132         84 CTVRNMVAE   92 (243)
Q Consensus        84 C~~~~~~~~   92 (243)
                      |.+.+..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999876553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.19  E-value=1.8e-10  Score=68.69  Aligned_cols=71  Identities=30%  Similarity=0.626  Sum_probs=54.7

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC-cceeEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQ   97 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~   97 (243)
                      ..+.+|+.+.|.|.+. +.|...+.|++++..+....           ..+.+..++.+|.|.|+|.+.+..+ ..+..+
T Consensus         9 ~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQ-----------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEES-----------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeee-----------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence            5588999999999996 77778999999987766321           1267788999999999999998554 345555


Q ss_pred             EEEE
Q psy11132         98 RLIV  101 (243)
Q Consensus        98 ~l~v  101 (243)
                      .|.|
T Consensus        77 ~v~V   80 (80)
T PF13895_consen   77 NVTV   80 (80)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            5554

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.19  E-value=7.1e-10  Score=67.44  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+++.+.+|++++|+|.+. +.....+.|++.+..+        ....++..........+|+|.+++.+|+|.|.|.+.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~-~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVK-NNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             cCceEEcCCCcEEEEEEEc-cCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            3467899999999999995 5445578888765332        234556555433446789999999999999999997


Q ss_pred             e
Q psy11132         88 N   88 (243)
Q Consensus        88 ~   88 (243)
                      .
T Consensus        83 t   83 (95)
T cd05881          83 T   83 (95)
T ss_pred             c
Confidence            5

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.18  E-value=5.5e-10  Score=67.87  Aligned_cols=85  Identities=22%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCce-eEEEECCeeecCCCceEEEEe----eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHV----DQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ....+.+|+.+.|.|.+. ..|++. +.|.+++..+...........    ....+.|.+.++..+|.|.|+|.+.|+..
T Consensus        11 ~~~~v~~gE~~~L~V~ie-AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYE-AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEE-eCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            356689999999999995 778776 999999876644332111211    12458999999999999999999999999


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                      ..+.++.|.|.
T Consensus        90 ~~s~tF~l~v~  100 (101)
T cd05860          90 SASVTFNVYVN  100 (101)
T ss_pred             eEEEEEEEEEe
Confidence            88888888774

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.18  E-value=1e-10  Score=66.50  Aligned_cols=63  Identities=37%  Similarity=0.670  Sum_probs=46.9

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc-eeEEEEeecCCCCCeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF-SSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      |+++.|.|.+..+.+...+.|++++................. ...|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            789999999955778899999999887664433222221111 123999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.16  E-value=2.1e-10  Score=69.64  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=52.5

Q ss_pred             cccccCCeEEEEEEeeC----CCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         19 RTLNVGERASLICSITK----GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..+.+|.+..|.|.-..    ..+.+.+.|||++.++....... .... ....|.|.++..+|+|.|+|.+.+..+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-EecC-CCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            34678899999997322    23556999999999886543211 1111 1457999999999999999999988654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.15  E-value=1.4e-10  Score=70.26  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCe-eEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  187 (243)
                      ..+.+|+.+.|.|....|.|.|.+.|+.++...-........   ...+.|.|.++..+|+| .|.|.|.|...
T Consensus        13 v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          13 VEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM---GQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             eEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE---CCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            567899999999985579999999999876543322222111   12478999999999999 89999999753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00409 IG Immunoglobulin

Probab=99.15  E-value=2.3e-09  Score=64.57  Aligned_cols=80  Identities=36%  Similarity=0.625  Sum_probs=61.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      .+..|+++.|.|.+. +.+.+.+.|+++ +..+............. ...|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         5 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        5 TVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             EEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            456899999999995 568889999998 77776343333333222 578999999999999999999988887766666


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            654

>smart00410 IG_like Immunoglobulin like

Probab=99.15  E-value=2.3e-09  Score=64.57  Aligned_cols=80  Identities=36%  Similarity=0.625  Sum_probs=61.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      .+..|+++.|.|.+. +.+.+.+.|+++ +..+............. ...|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         5 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        5 TVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             EEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            456899999999995 568889999998 77776343333333222 578999999999999999999988887766666


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.13  E-value=6.2e-10  Score=66.09  Aligned_cols=64  Identities=27%  Similarity=0.437  Sum_probs=51.2

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ....+.+|+++.|.|... + +...+.|++++..+....++...     ...|.|..++..|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~-s-~~A~v~W~~ng~~l~~~~r~~~~-----~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLR-S-NLASPVWLFNGTPLNAQFSYRVG-----TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCC-C-CCccEEEEECCcccCCCcceEEe-----CCCCEEEECCHhhCEEEEEEEe
Confidence            356789999999999973 3 45699999999988765544333     3448899999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.13  E-value=4.8e-10  Score=68.13  Aligned_cols=73  Identities=25%  Similarity=0.267  Sum_probs=53.3

Q ss_pred             CCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        116 GLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      .+..|....|.|.-..+    .+.++++|||++..+..........  ...+.|.|.++..+|+|.|+|.|.+..|...
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL--KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec--CCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            34678999999963233    3677999999999887543222110  1135699999999999999999999876553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.11  E-value=1.6e-09  Score=66.80  Aligned_cols=80  Identities=16%  Similarity=0.321  Sum_probs=53.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.+.+.+.|++.+..+        ....++...........|.|.+++.+|+|.|.|.+.+..
T Consensus         7 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           7 VTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             EEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            457789999999999 57788899998532211        011122221222234679999999999999999999765


Q ss_pred             cceeeeEEEE
Q psy11132        187 AQARYSSKLQ  196 (243)
Q Consensus       187 g~~~~~~~l~  196 (243)
                      . ....+.|.
T Consensus        86 ~-~~~~~~~~   94 (95)
T cd05717          86 V-QTAKATVT   94 (95)
T ss_pred             C-ceEEEEEE
Confidence            3 34444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.11  E-value=6.7e-10  Score=67.71  Aligned_cols=82  Identities=20%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             CCCCCCcEEEEEEeec----------CCCCCEEEEEeCCEecCCCCCeeEE--eeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        116 GLPEGARTRVICGVTH----------GDPPLTIRWLKDGKPLSPRFPVNVS--DLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      .+.+|+.+.|.|....          ......+.|+|++..+.........  ........|.|.++..+|+|.|+|.+.
T Consensus        11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r   90 (104)
T cd05896          11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR   90 (104)
T ss_pred             EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence            4578999999998521          2224589999997555443321110  111224679999999999999999999


Q ss_pred             ccCcceeeeEEEEE
Q psy11132        184 NTAAQARYSSKLQV  197 (243)
Q Consensus       184 n~~g~~~~~~~l~v  197 (243)
                      |.....+.++.|+|
T Consensus        91 N~t~C~~~~i~l~V  104 (104)
T cd05896          91 NSTYCMKVSMSLTV  104 (104)
T ss_pred             CCCcceEEEEEEEC
Confidence            98877777766654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.09  E-value=2.6e-09  Score=63.87  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=47.8

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec----cceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      +.|.|.+.++.|.+.++|+++|..+...........+    ...+.|.+.....+|.|.|+|.|.|.......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence            6899999656788899999999987643221111111    11356778777777888999999998754433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.09  E-value=1.1e-09  Score=66.53  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecCC----CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc-cCcce
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGK--PLSP----RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN-TAAQA  189 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~  189 (243)
                      ..+|+++.|.|..  +.|.+.+.|++.+.  ....    ......     ....|.|.+++.+|+|.|.|.|.+ ..+..
T Consensus         8 ~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           8 GVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            5689999999986  47889999998432  2111    111111     135599999999999999999984 55555


Q ss_pred             eeeEEEEEE
Q psy11132        190 RYSSKLQVK  198 (243)
Q Consensus       190 ~~~~~l~v~  198 (243)
                      ...+.|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            566666665

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.09  E-value=7.6e-10  Score=67.34  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=50.8

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-CCC-------------CCeeEE--eeccceeEEEEeecCCCCCeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPR-------------FPVNVS--DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-~~~-------------~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      .+.+|++++|.|.. .+.+.+.+.|++++... ...             .+....  ........|.|.++..+|+|.|.
T Consensus         3 ~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            35689999999998 57888999999776332 110             001111  11223467999999999999999


Q ss_pred             EEEEccCcc
Q psy11132        180 CVASNTAAQ  188 (243)
Q Consensus       180 C~~~n~~g~  188 (243)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999997654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.08  E-value=3.5e-10  Score=67.43  Aligned_cols=71  Identities=35%  Similarity=0.678  Sum_probs=53.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc-ceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+....           ..+.+..+..+|+|.|+|.+.+..+ ..+..+
T Consensus         9 ~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQ-----------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEES-----------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeee-----------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence            4467899999999994 88889999999987666221           1166778889999999999999665 334555


Q ss_pred             EEEE
Q psy11132        194 KLQV  197 (243)
Q Consensus       194 ~l~v  197 (243)
                      .|.|
T Consensus        77 ~v~V   80 (80)
T PF13895_consen   77 NVTV   80 (80)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            5554

...

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.06  E-value=2.6e-09  Score=67.33  Aligned_cols=80  Identities=20%  Similarity=0.352  Sum_probs=54.7

Q ss_pred             cCCeEEEEEEeeCC-----CCCceeEEEECCe---e----e-cC----------CCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         23 VGERASLICSITKG-----DIPLTIKWLKDGR---Y----L-DN----------SAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        23 ~g~~~~l~C~~~~~-----~~~~~v~W~~~~~---~----~-~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|++|+|.|.+...     .....+.|+|...   +    + ..          ..+..+........+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999998533     2345799998541   0    1 00          12222221112356899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEE
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999887777777777775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.05  E-value=1.6e-09  Score=66.05  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=53.1

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.+...+ ...+.+|++|+|.|..  ..+...+.|+++|.......    .........+.|.+++.+|+|.|+|...+.
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            5555555 3468899999999986  45566899999987533211    111223567999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.03  E-value=5.9e-09  Score=62.36  Aligned_cols=67  Identities=21%  Similarity=0.323  Sum_probs=46.6

Q ss_pred             eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE-Eee---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ++.|.|.+.++.|.+.+.|+++|..+......... ..+   ...+.|.+.....+|.|.|+|.+.+....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~   71 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP   71 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence            36899999766788899999999987643221111 111   11356778777777889999999987654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.02  E-value=5.3e-09  Score=65.87  Aligned_cols=81  Identities=22%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             cCCeEEEEEEeeCCC-----CCceeEEEECC---e---ee-c-CCC----------ceEEEEeeeeceEEEEeecCCCCC
Q psy11132         23 VGERASLICSITKGD-----IPLTIKWLKDG---R---YL-D-NSA----------ALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~---~---~~-~-~~~----------~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|++|+|.|.+....     ....+.|++..   .   .+ . ...          +...........+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999986332     24699999862   1   11 0 010          111111123468999999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEc
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNV  103 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~  103 (243)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998766677778887753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.01  E-value=7.3e-10  Score=65.10  Aligned_cols=75  Identities=28%  Similarity=0.463  Sum_probs=48.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ||.+...+.......+. +.|+|.+..+.+.+.++|+ +.....   ...........+.|.|.++..+|.|.|+|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            35555554444343333 9999999644447899999 111111   111122223367899999999999999999986

...

>KOG3515|consensus

Probab=98.99  E-value=4.9e-09  Score=84.92  Aligned_cols=229  Identities=21%  Similarity=0.238  Sum_probs=128.3

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEee-CCCCCceeEEEECCeeecCCC--ceEE----EEee-eeceEEEEeec
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSA--ALSI----THVD-QYNSMLVIDSV   74 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~--~~~~----~~~~-~~~~~l~i~~~   74 (243)
                      .+.+.++|.-...........+..+.+.|.+. .+.|.+.+.|..+........  ...+    .... ...+.+.+...
T Consensus        91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~  170 (741)
T KOG3515|consen   91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS  170 (741)
T ss_pred             eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence            45666777655554455667788999999543 466778999999876543211  0000    0001 22567888888


Q ss_pred             CCCCCeeEEEEEEeC---CCcceeEEEEEEEcCCCcccc--ccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCC
Q psy11132         75 SARHSGNYSCTVRNM---VAEDTQVQRLIVNVPPKIESF--AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  149 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~---~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  149 (243)
                      +.++.|.|+|.+.+.   .........+.+..+......  ........+|+.+.|.|.+..+.|.+.++|+++......
T Consensus       171 Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  171 RKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             EecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            899999999999874   233333344444333222111  111145678999999999888999999999998877654


Q ss_pred             CCC-eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec---CCCCCeeeeeccceeeeccCccc-
Q psy11132        150 RFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL---NRLPPSYTLVFSQASYMSTSYYS-  224 (243)
Q Consensus       150 ~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~---~~~~p~~~~~~~~~~~~~~~~~~-  224 (243)
                      ... ......+...+.+.+..-..++.-...|.+.| ....  +..+.+..++   +..++...+..+.+.-+.|.... 
T Consensus       251 ~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~--~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss  327 (741)
T KOG3515|consen  251 SSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAA--SQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSS  327 (741)
T ss_pred             hhcccCCCCCCcccccccccccccchhhhhhccccC-cccc--ceeeecccccccccccCcccccccccccccceeccCC
Confidence            311 11111111223343333233334478899998 2211  1112222111   11233333444555555553332 


Q ss_pred             --ccccceEEeC
Q psy11132        225 --FEQDSWMIDN  234 (243)
Q Consensus       225 --~~~~~W~~~~  234 (243)
                        ...+.|+++.
T Consensus       328 ~p~~~i~w~~~~  339 (741)
T KOG3515|consen  328 KPPAHIAWYKDT  339 (741)
T ss_pred             CCccceeeeccC
Confidence              2378999854

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.99  E-value=5.6e-09  Score=63.66  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+..|++++|.|..  ..+...+.|+++|.......    .........|.|.+++.+|+|.|+|.+.+.
T Consensus        11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            567899999999986  36778999999987544211    112233577999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.97  E-value=1.2e-08  Score=59.90  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEE--EeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT--HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNV  103 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~  103 (243)
                      +.|.|.+.++.|...|+|++++.++.........  ......+.|.+.....+|...|+|.+.|+... ......|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            6899999889999999999999998764221101  11122467777655555555999999987643 44555666653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.96  E-value=2.2e-08  Score=60.97  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+.+|+++.|.|.+ .+.....+.|++.+..+        ....++...........|.|.+++.+|.|.|.|.+...
T Consensus         7 vtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           7 VTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             eEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            567899999999999 46556667887655322        23333444433455678999999999999999999763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.96  E-value=1.7e-08  Score=64.12  Aligned_cols=77  Identities=18%  Similarity=0.343  Sum_probs=52.1

Q ss_pred             CCCcccccCCeEEEEEEeeCCC---CCceeEEEE---------------CCeeec-C----CCceEEEEe-eeeceEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGD---IPLTIKWLK---------------DGRYLD-N----SAALSITHV-DQYNSMLVI   71 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~---------------~~~~~~-~----~~~~~~~~~-~~~~~~l~i   71 (243)
                      +.++.+..|+.+.|.|.+....   +...+.|.+               +|.... .    ..|..+... ...+.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            3456688999999999986432   346999933               232221 1    123332221 234689999


Q ss_pred             eecCCCCCeeEEEEEEeCCCc
Q psy11132         72 DSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+++.+|.|.|+|.+.|....
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999987664

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.95  E-value=1.5e-08  Score=64.01  Aligned_cols=81  Identities=21%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             cCCeEEEEEEeeCCCC---------CceeEEEECC--eeec-----------C---CCceEEEE--eeeeceEEEEeecC
Q psy11132         23 VGERASLICSITKGDI---------PLTIKWLKDG--RYLD-----------N---SAALSITH--VDQYNSMLVIDSVS   75 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~---------~~~v~W~~~~--~~~~-----------~---~~~~~~~~--~~~~~~~l~i~~~~   75 (243)
                      .|++++|+|.+....+         ...+.|++..  ....           .   ..|..+..  ......+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999999864332         3589999852  2110           0   11222211  22346889999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEc
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNV  103 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  103 (243)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999988666677778887753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.95  E-value=1.2e-08  Score=63.37  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=50.3

Q ss_pred             CeEEEEEEeeCCC--CCceeEEEECCee----e-----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         25 ERASLICSITKGD--IPLTIKWLKDGRY----L-----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        25 ~~~~l~C~~~~~~--~~~~v~W~~~~~~----~-----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ++|+|.|.+....  ....+.|+|....    +           .+  ..+..+........+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999986433  2458999985431    0           01  11112111111367999999999999999999


Q ss_pred             EEe-CCCcceeEEEEEE
Q psy11132         86 VRN-MVAEDTQVQRLIV  101 (243)
Q Consensus        86 ~~~-~~~~~~~~~~l~v  101 (243)
                      +.. +.|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5566666676665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.94  E-value=2e-08  Score=63.27  Aligned_cols=81  Identities=15%  Similarity=0.295  Sum_probs=55.4

Q ss_pred             CCCcEEEEEEeecC-----CCCCEEEEEeCCEe--------cCC----------CCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        119 EGARTRVICGVTHG-----DPPLTIRWLKDGKP--------LSP----------RFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       119 ~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~--------~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      .|++++|.|.....     .....+.|++....        +..          ..+............|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999988422     12457999985411        000          01111111112246799999999999


Q ss_pred             eeEEEEEEccCcceeeeEEEEEEe
Q psy11132        176 GEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       176 g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999988888888888874

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.94  E-value=2.1e-08  Score=58.96  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe--eccceeEEEEeecCCCCCeeEEEEEEccCcc-eeeeEEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQV  197 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v  197 (243)
                      +.|.|.+.++.|++.+.||+++..+..........  .....+.|.|..-..+|...|+|.|.|+.-. ......|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            68999998889999999999999987653221111  1123467878654455555999999997642 233344444

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.93  E-value=4.1e-08  Score=61.76  Aligned_cols=88  Identities=24%  Similarity=0.422  Sum_probs=54.9

Q ss_pred             EEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeecc--c--eeEEEEeecCCCCC
Q psy11132        101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS--F--SSLLSINSVSAAHS  175 (243)
Q Consensus       101 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~  175 (243)
                      |..+|..+...........|+.++|.|.+.+.+|. ..++|++||..+...........+.  +  .+.|.+.. ...|.
T Consensus         2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~   80 (111)
T cd05772           2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV   80 (111)
T ss_pred             cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence            34456655554443445678889999999877774 7999999999986533222211221  1  23455543 34444


Q ss_pred             e-eEEEEEEccCcce
Q psy11132        176 G-EYTCVASNTAAQA  189 (243)
Q Consensus       176 g-~y~C~~~n~~g~~  189 (243)
                      | .|+|.+.+.....
T Consensus        81 ~~~ytC~V~H~~l~~   95 (111)
T cd05772          81 HSQVTCEVQHRTLQA   95 (111)
T ss_pred             cCceEEEEEeCCCCC
Confidence            4 5999999975443

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.93  E-value=1.3e-08  Score=63.37  Aligned_cols=82  Identities=20%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCee-----e---cCC-------CceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRY-----L---DNS-------AALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~---~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ....+.+|+++.|.|... ......+.|+|+...     +   ...       ..+..+..-..+++|.|.++++.|+|.
T Consensus         6 ~p~~~~~G~~V~L~v~~~-p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~   84 (105)
T cd05774           6 VPPQVAEGENVLLLVHNL-PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF   84 (105)
T ss_pred             cCCcccCCCCEEEEecCC-CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence            344578999999999753 334459999996321     1   000       001111111225789999999999999


Q ss_pred             EEEEEEeCCCc-ceeEEEE
Q psy11132         82 YSCTVRNMVAE-DTQVQRL   99 (243)
Q Consensus        82 Y~C~~~~~~~~-~~~~~~l   99 (243)
                      |+|.+.+.... ....+.|
T Consensus        85 Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          85 YTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEeCCccEEEEEEEE
Confidence            99999887643 3444444

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.93  E-value=7.1e-09  Score=65.71  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCee--e------------cCCCceEEEEe-eeeceEEEEeecCCCCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRY--L------------DNSAALSITHV-DQYNSMLVIDSVSARHS   79 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~   79 (243)
                      .+..+.+.+|++++|.|.+. +.+...+.|++....  .            ....++.+... ......|+|.+++.+|+
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYS-TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             cCCceEEcCCCCEEEEEEEC-CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            35567789999999999995 446679999985321  0            11233333221 12467899999999999


Q ss_pred             eeEEEEEEeCC
Q psy11132         80 GNYSCTVRNMV   90 (243)
Q Consensus        80 G~Y~C~~~~~~   90 (243)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.91  E-value=1.8e-08  Score=63.50  Aligned_cols=80  Identities=19%  Similarity=0.300  Sum_probs=54.0

Q ss_pred             cCCeEEEEEEeeCCCC-----------CceeEEEECC--ee---ec---------C--CCceEEEE--eeeeceEEEEee
Q psy11132         23 VGERASLICSITKGDI-----------PLTIKWLKDG--RY---LD---------N--SAALSITH--VDQYNSMLVIDS   73 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~-----------~~~v~W~~~~--~~---~~---------~--~~~~~~~~--~~~~~~~l~i~~   73 (243)
                      .|++++|.|.+....+           .+.|.|+|..  ..   +.         +  ..|..+..  ....+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999999864321           3589999842  11   10         0  11333322  123578999999


Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      ++.+|+|.|+|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999766666666666664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.91  E-value=7e-09  Score=65.77  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe--eec--------------C--CCceEEEEeeeeceEEEEeecCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGR--YLD--------------N--SAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~--------------~--~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      .+....+.+|++++|.|.+. + +...+.|||...  .+.              .  ..++...........|.|.+++.
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~-~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQT-S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             CCCceEEcCCCcEEEEEEEC-C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            45567789999999999985 4 556899998532  110              0  12233222222357899999999


Q ss_pred             CCCeeEEEEEEeC
Q psy11132         77 RHSGNYSCTVRNM   89 (243)
Q Consensus        77 ~d~G~Y~C~~~~~   89 (243)
                      +|+|.|.|.+.+.
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 EDSAVYLCASSLG   94 (110)
T ss_pred             hhCEEEEEEeeCC
Confidence            9999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.90  E-value=1.8e-08  Score=62.22  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeec--C-----------CCceE-EEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLD--N-----------SAALS-ITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--~-----------~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ..|++|+|+|..........+.|++....+.  .           ...+. .......+.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            4799999999875324456899998643221  0           01111 11112335889999999999999999998


Q ss_pred             eCCCc-ceeEEEEEE
Q psy11132         88 NMVAE-DTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~-~~~~~~l~v  101 (243)
                      ...+. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            77654 355565554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.88  E-value=2.1e-08  Score=61.36  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=52.4

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCce--eEEEECCeeecCCCceEE-EEeeeeceEEEEeecCCCCCe-eEEEEEE
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLT--IKWLKDGRYLDNSAALSI-THVDQYNSMLVIDSVSARHSG-NYSCTVR   87 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~--v~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~   87 (243)
                      +.+.+....+.+|+.++|.|.+.++.|...  |.||+++..+........ ........+|++. +.++|.| .|+|.+.
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~   82 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETE   82 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEE
Confidence            334444445789999999999988888875  799999998865321110 0011124566665 4566666 9999998


Q ss_pred             eCCC
Q psy11132         88 NMVA   91 (243)
Q Consensus        88 ~~~~   91 (243)
                      ....
T Consensus        83 l~l~   86 (100)
T cd05755          83 LDLR   86 (100)
T ss_pred             eccC
Confidence            7554

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.87  E-value=2.2e-08  Score=62.37  Aligned_cols=78  Identities=19%  Similarity=0.343  Sum_probs=50.8

Q ss_pred             CCeEEEEEEeeCCC--CCceeEEEECCe--ee---cC------------CCceEEEE--eeeeceEEEEeecCCCCCeeE
Q psy11132         24 GERASLICSITKGD--IPLTIKWLKDGR--YL---DN------------SAALSITH--VDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        24 g~~~~l~C~~~~~~--~~~~v~W~~~~~--~~---~~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |++|+|+|.+....  ....+.|++...  .+   ..            ..+..+..  ......+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999985221  124788988542  11   00            01222211  112357899999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEE
Q psy11132         83 SCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v  101 (243)
                      +|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987766666666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.87  E-value=2.3e-08  Score=61.79  Aligned_cols=78  Identities=22%  Similarity=0.296  Sum_probs=51.1

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCee----ec-----C--------CCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRY----LD-----N--------SAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~----~~-----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      |++++|.|..........+.|+|....    +.     .        ..+..+........+|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998743323347999984321    10     0        111122122234678999999999999999988


Q ss_pred             E-eCCCcceeEEEEEE
Q psy11132         87 R-NMVAEDTQVQRLIV  101 (243)
Q Consensus        87 ~-~~~~~~~~~~~l~v  101 (243)
                      . .+.|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45666677777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.87  E-value=7.4e-09  Score=68.59  Aligned_cols=68  Identities=21%  Similarity=0.377  Sum_probs=54.9

Q ss_pred             EEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEE
Q psy11132        164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMI  232 (243)
Q Consensus       164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~  232 (243)
                      .|.|.+++.+|+|.|.|.+.+..+.....+.|.|.     .||.+.+.       .+....+.|....+ |   .+.|++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~   76 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR   76 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence            58899999999999999999988888888899888     56665433       34556789988775 3   689999


Q ss_pred             eCCe
Q psy11132        233 DNEN  236 (243)
Q Consensus       233 ~~~~  236 (243)
                      +|..
T Consensus        77 ~g~~   80 (139)
T cd05771          77 EPPG   80 (139)
T ss_pred             CCCC
Confidence            9854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.87  E-value=4.2e-08  Score=65.89  Aligned_cols=88  Identities=18%  Similarity=0.318  Sum_probs=62.2

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeee----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYL----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ...+.+|++++|.|....+...+.+.|+|....+          .+  ..+..+.........|+|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            4568999999999997435456689999864322          11  12333222233468999999999999999998


Q ss_pred             EEe-CCC-cceeEEEEEEEcCC
Q psy11132         86 VRN-MVA-EDTQVQRLIVNVPP  105 (243)
Q Consensus        86 ~~~-~~~-~~~~~~~l~v~~~p  105 (243)
                      +.. +.| ..+....|.|....
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            764 456 67778888887643

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.87  E-value=1.7e-08  Score=63.50  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=49.5

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e------------cCCCceEEEEee-eeceEEEEeecCCCCCee
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L------------DNSAALSITHVD-QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~   81 (243)
                      .+.+|++++|.|.+....+...+.|++....     +            ....+..+.... ....+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            4778999999999963325668999984321     1            011233322222 145789999999999999


Q ss_pred             EEEEEEeCCC
Q psy11132         82 YSCTVRNMVA   91 (243)
Q Consensus        82 Y~C~~~~~~~   91 (243)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999986554

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.84  E-value=6.1e-08  Score=59.68  Aligned_cols=76  Identities=14%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             eEEEEEEeeCCCCC---ceeEEEECC--e--ee---c----------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         26 RASLICSITKGDIP---LTIKWLKDG--R--YL---D----------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        26 ~~~l~C~~~~~~~~---~~v~W~~~~--~--~~---~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +++|.|.+....+.   ..|.|.+..  .  .+   .          ...|..+......+.+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68899998633332   269998742  1  11   0          112333332233468999999999999999999


Q ss_pred             EEe-CCCcceeEEEEEE
Q psy11132         86 VRN-MVAEDTQVQRLIV  101 (243)
Q Consensus        86 ~~~-~~~~~~~~~~l~v  101 (243)
                      +.+ +.|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 6777777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.84  E-value=2.4e-08  Score=61.14  Aligned_cols=68  Identities=22%  Similarity=0.219  Sum_probs=45.8

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecC--------------CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDN--------------SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |++|+|.|.+. ......+.|+++......              ...+..+..-..+.+|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~-~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNL-PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccC-CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            78999999985 455569999986532210              001111111112478999999999999999999876


Q ss_pred             CCc
Q psy11132         90 VAE   92 (243)
Q Consensus        90 ~~~   92 (243)
                      .+.
T Consensus        80 ~~~   82 (92)
T cd05741          80 NGV   82 (92)
T ss_pred             CCc
Confidence            543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.83  E-value=5.2e-08  Score=59.66  Aligned_cols=74  Identities=16%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCE--EEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCe-eEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~  189 (243)
                      ..+.+|+.++|.|.+.++.|.+.  +.||+++..+........ ........++.+. +..+|.| .|+|.|.+..+..
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCcc
Confidence            34678999999999988888886  799999998875422110 0112224566665 4556666 9999999977654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.83  E-value=3.7e-08  Score=60.35  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      |.+...+ ..++.+|++|+|.|... . ....+.|+|+|........ ...........+.|..++.+|+|.|.|...
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~-~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHL-YEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceec-ccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4444433 45588999999999874 2 4458999998865322110 000012225678999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.82  E-value=5.4e-08  Score=62.03  Aligned_cols=76  Identities=20%  Similarity=0.377  Sum_probs=49.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC---CceeEEEEC----Cee--e----c-----CCC----ceEEE-EeeeeceEEEEe
Q psy11132         16 NPERTLNVGERASLICSITKGDI---PLTIKWLKD----GRY--L----D-----NSA----ALSIT-HVDQYNSMLVID   72 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~----~~~--~----~-----~~~----~~~~~-~~~~~~~~l~i~   72 (243)
                      +..+.+.+|++++|.|.+....+   ...+.|++.    +..  +    .     ...    +..+. .....+.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            45677899999999999853322   246999852    111  1    0     011    11111 112235789999


Q ss_pred             ecCCCCCeeEEEEEEeCCC
Q psy11132         73 SVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +++.+|+|.|.|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999997655

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.81  E-value=7.9e-08  Score=58.65  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             CeEEEEEEeeCCCCCceeEEEECCe----eec-------------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         25 ERASLICSITKGDIPLTIKWLKDGR----YLD-------------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        25 ~~~~l~C~~~~~~~~~~v~W~~~~~----~~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ++++|+|..........++|.|...    .+.             -..+..+......+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4689999985434445899987421    110             11233343333447899999999999999999975


Q ss_pred             -eCCCcceeEEEEEE
Q psy11132         88 -NMVAEDTQVQRLIV  101 (243)
Q Consensus        88 -~~~~~~~~~~~l~v  101 (243)
                       .+.|.......|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             46677777777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.79  E-value=8e-08  Score=61.49  Aligned_cols=77  Identities=16%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC---CceeEEEECCe------ee-c---------CCC----ceEEEE-eeeeceEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGDI---PLTIKWLKDGR------YL-D---------NSA----ALSITH-VDQYNSMLVI   71 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~------~~-~---------~~~----~~~~~~-~~~~~~~l~i   71 (243)
                      +..+.+.+|++++|.|.+....+   ...+.|++...      .+ .         ...    +..+.. ......+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            44566889999999998853322   25799986321      11 0         011    111111 1123478999


Q ss_pred             eecCCCCCeeEEEEEEeCCCc
Q psy11132         72 DSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+++.+|+|.|.|.+.+....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999976553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.79  E-value=1.1e-07  Score=59.76  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             CCCcEEEEEEeecC-----CCCCEEEEEeCC---E-e--c-C-CCCCe--------eE--EeeccceeEEEEeecCCCCC
Q psy11132        119 EGARTRVICGVTHG-----DPPLTIRWLKDG---K-P--L-S-PRFPV--------NV--SDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       119 ~g~~~~l~C~~~~~-----~p~~~~~W~~~~---~-~--~-~-~~~~~--------~~--~~~~~~~~~l~i~~~~~~d~  175 (243)
                      .|++++|.|.....     .....+.|++..   . .  + . .....        ..  .........|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            48999999998532     125699999862   1 0  0 0 00000        00  01123457899999999999


Q ss_pred             eeEEEEEEccCcceeeeEEEEEEe
Q psy11132        176 GEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       176 g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877778888888874

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.78  E-value=1e-07  Score=56.85  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      +.|.|.+.++.|++.+.|++++..+............+   ..+.|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            68999998778999999999999886432111111111   12445555444555679999999987543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.78  E-value=6.7e-08  Score=61.91  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             CCCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--eee------c-----------CCCceEEEEeee-eceEEEEee
Q psy11132         15 TNPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RYL------D-----------NSAALSITHVDQ-YNSMLVIDS   73 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~-~~~~l~i~~   73 (243)
                      .+..+.+.+|++++|.|.+... .+...+.||+..  ...      .           ...++.+..... ....|+|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            3456678899999999998531 456789999842  111      0           123333332221 357899999


Q ss_pred             cCCCCCeeEEEEEEe
Q psy11132         74 VSARHSGNYSCTVRN   88 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~   88 (243)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.77  E-value=3.7e-08  Score=61.97  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCC-CceeEEEECC--ee---ec---------CCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDI-PLTIKWLKDG--RY---LD---------NSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .+....+.+|++++|.|.+. +.. ...+.|||..  ..   +.         ...++.... ......|.|.+++.+|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           6 SPATLSVSPGESATISCKAS-QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEPEDA   83 (106)
T ss_pred             CCCcEEECCCCCEEEEEEEC-CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCChHHC
Confidence            35566789999999999984 333 4589999843  11   10         012333221 22346799999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.77  E-value=7.7e-08  Score=57.17  Aligned_cols=63  Identities=29%  Similarity=0.516  Sum_probs=48.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      ..+..|+.+.|.|.. .+ +.+.+.|++++..+.........     ..-|.|..++.+|+|.|.|.+.-
T Consensus         6 ~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~~~~r~~~~-----~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           6 RTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLNAQFSYRVG-----TDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEecCCCEEEECCC-CC-CCccEEEEECCcccCCCcceEEe-----CCCCEEEECCHhhCEEEEEEEec
Confidence            456789999999987 33 46799999999988754333222     22377899999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.76  E-value=1.5e-07  Score=58.33  Aligned_cols=77  Identities=16%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             CcEEEEEEeecCC--CCCEEEEEeCCEe----c-----------CCC--CCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        121 ARTRVICGVTHGD--PPLTIRWLKDGKP----L-----------SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       121 ~~~~l~C~~~~~~--p~~~~~W~~~~~~----~-----------~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      +++.|.|......  ....+.|++....    +           ...  .+............|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999885333  2457999985431    0           000  0011111111356899999999999999999


Q ss_pred             EEc-cCcceeeeEEEEE
Q psy11132        182 ASN-TAAQARYSSKLQV  197 (243)
Q Consensus       182 ~~n-~~g~~~~~~~l~v  197 (243)
                      +.. +.|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6688888887776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.75  E-value=1.7e-07  Score=59.07  Aligned_cols=81  Identities=21%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             CCCcEEEEEEeecCCC-----------CCEEEEEeCCE--e---c---------CCC--CCeeEEe--eccceeEEEEee
Q psy11132        119 EGARTRVICGVTHGDP-----------PLTIRWLKDGK--P---L---------SPR--FPVNVSD--LDSFSSLLSINS  169 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-----------~~~~~W~~~~~--~---~---------~~~--~~~~~~~--~~~~~~~l~i~~  169 (243)
                      .|++++|.|......+           .+.+.|++...  .   +         ...  .+.....  .......|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999998853321           36899997421  0   0         001  0111111  122467899999


Q ss_pred             cCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        170 VSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       170 ~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      ++.+|+|.|.|.+.+........+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998777777888888774

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.74  E-value=1.6e-07  Score=56.01  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      +.|.|.+.++.|.+.++|++++..+.... ........    ..+.|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            68999998788888999999999886433 11111111    1234555444445567999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.74  E-value=1.6e-07  Score=58.42  Aligned_cols=78  Identities=19%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             CCcEEEEEEeecCC--CCCEEEEEeCCEe-----------cCC----C--CCeeEEe--eccceeEEEEeecCCCCCeeE
Q psy11132        120 GARTRVICGVTHGD--PPLTIRWLKDGKP-----------LSP----R--FPVNVSD--LDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       120 g~~~~l~C~~~~~~--p~~~~~W~~~~~~-----------~~~----~--~~~~~~~--~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      |+++.|.|......  ....+.|++....           ...    .  .+.....  .......|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            68899999874221  1246888875421           100    0  0111110  112346799999999999999


Q ss_pred             EEEEEccCcceeeeEEEEE
Q psy11132        179 TCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       179 ~C~~~n~~g~~~~~~~l~v  197 (243)
                      .|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998777777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.72  E-value=2.6e-07  Score=58.04  Aligned_cols=79  Identities=24%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             CCeEEEEEEeeCCC------CCceeEEEECC-----eee---c-----------CCCceEEEE--eeeeceEEEEeecCC
Q psy11132         24 GERASLICSITKGD------IPLTIKWLKDG-----RYL---D-----------NSAALSITH--VDQYNSMLVIDSVSA   76 (243)
Q Consensus        24 g~~~~l~C~~~~~~------~~~~v~W~~~~-----~~~---~-----------~~~~~~~~~--~~~~~~~l~i~~~~~   76 (243)
                      |++++|+|.+....      ..+.+.|.+..     ...   .           ...|..+..  ...++.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999975221      24689999741     111   0           012222222  112468999999999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      +|+|.|.|.+..........+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999866667777788775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.71  E-value=3.8e-07  Score=57.40  Aligned_cols=86  Identities=20%  Similarity=0.342  Sum_probs=52.0

Q ss_pred             EecCCCccCC-CCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCC
Q psy11132          6 STVPPKLSPT-NPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHS   79 (243)
Q Consensus         6 v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~   79 (243)
                      |..+|..... ........|+.++|.|.+.+..|. ..++|++||..+...........+.    ..+.|.+.. ...|.
T Consensus         2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~   80 (111)
T cd05772           2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV   80 (111)
T ss_pred             cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence            4556655433 233345578889999999877775 6999999999886432211111111    123454443 34444


Q ss_pred             e-eEEEEEEeCCCc
Q psy11132         80 G-NYSCTVRNMVAE   92 (243)
Q Consensus        80 G-~Y~C~~~~~~~~   92 (243)
                      | .|+|.+.+....
T Consensus        81 ~~~ytC~V~H~~l~   94 (111)
T cd05772          81 HSQVTCEVQHRTLQ   94 (111)
T ss_pred             cCceEEEEEeCCCC
Confidence            4 599999986543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.71  E-value=1.5e-07  Score=59.60  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------------CCCCCeeEEe-eccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------------SPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|+++.|.|.+. +.+...+.|++....-              ....+..... .......|.|.+++.+|+|.|.
T Consensus         8 v~~~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           8 LSVQEGENVTLNCNYS-TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             eEEcCCCCEEEEEEEC-CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence            4578999999999994 5578899999853210              0111222221 1234678999999999999999


Q ss_pred             EEEEccC
Q psy11132        180 CVASNTA  186 (243)
Q Consensus       180 C~~~n~~  186 (243)
                      |.+.+..
T Consensus        87 C~~~~~~   93 (109)
T cd04983          87 CALSESG   93 (109)
T ss_pred             EEEecCC
Confidence            9999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.71  E-value=2.6e-07  Score=55.09  Aligned_cols=66  Identities=18%  Similarity=0.327  Sum_probs=45.9

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc----eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF----SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +.|.|.+.+++|++.++|+++|..+...........++.    .+.|.+.....++...|+|.|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            679999987789999999999998875433222221211    244556555566677999999998753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.70  E-value=1e-08  Score=60.15  Aligned_cols=57  Identities=37%  Similarity=0.695  Sum_probs=39.9

Q ss_pred             EEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        123 TRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       123 ~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      +.|.|.+. +.+ .+.++|+ +.....   ...........+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~-~~~~~~~~~W~-~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAE-GGPPPPSISWY-DSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEES-SEESSEEEEEE-TEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEc-cccCCeEEEEE-ecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999995 555 8899999 111100   011112223357899999999999999999987

...

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.70  E-value=3.1e-07  Score=57.83  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             CCeEEEEEEeeCCC----------CCceeEEEEC-----Ce-----ee------------cCCCceEEEE--eeeeceEE
Q psy11132         24 GERASLICSITKGD----------IPLTIKWLKD-----GR-----YL------------DNSAALSITH--VDQYNSML   69 (243)
Q Consensus        24 g~~~~l~C~~~~~~----------~~~~v~W~~~-----~~-----~~------------~~~~~~~~~~--~~~~~~~l   69 (243)
                      |++++|+|.+....          ..+.|+|++-     +.     .+            ....+..+..  ...++.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999986221          1348999873     11     11            0112223221  12346899


Q ss_pred             EEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        70 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      .|.+++.+|+|.|+|.+..........+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999887777777888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.70  E-value=4e-07  Score=54.29  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee-----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-----YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      +.|+|.+.++.|...|+|+++|..+..... .......     ..+.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999987788899999999998865432 1111111     1244555455556667999999987653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.69  E-value=3.5e-07  Score=55.89  Aligned_cols=74  Identities=15%  Similarity=0.335  Sum_probs=48.0

Q ss_pred             CeEEEEEEeeCCCCCceeEEEECCe----ee-----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         25 ERASLICSITKGDIPLTIKWLKDGR----YL-----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        25 ~~~~l~C~~~~~~~~~~v~W~~~~~----~~-----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +.++|.|..........+.|.|...    .+           ..  ..|..+......+.+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4689999985444456899998432    11           01  1233333322346899999999999999999986


Q ss_pred             e-CCCcceeEEE
Q psy11132         88 N-MVAEDTQVQR   98 (243)
Q Consensus        88 ~-~~~~~~~~~~   98 (243)
                      . +.|.....+.
T Consensus        81 t~P~g~~~~~i~   92 (96)
T cd05889          81 TYPQGSWEKVIE   92 (96)
T ss_pred             eCCCCCeEEEEE
Confidence            5 4555544443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.69  E-value=3.8e-07  Score=56.63  Aligned_cols=76  Identities=14%  Similarity=0.304  Sum_probs=49.3

Q ss_pred             eEEEEEEeeCCC-C-CceeEEEECCe---e--e---c--------C--CCceEEEEe-eeeceEEEEeecCCCCCeeEEE
Q psy11132         26 RASLICSITKGD-I-PLTIKWLKDGR---Y--L---D--------N--SAALSITHV-DQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus        26 ~~~l~C~~~~~~-~-~~~v~W~~~~~---~--~---~--------~--~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +++|+|...... + ...+.|+|...   +  +   .        .  ..+..+... ...+.+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999985322 1 34899998321   1  1   0        0  123333321 2346789999999999999999


Q ss_pred             EEEe-CCCcceeEEEEEE
Q psy11132         85 TVRN-MVAEDTQVQRLIV  101 (243)
Q Consensus        85 ~~~~-~~~~~~~~~~l~v  101 (243)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9986 5565566666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.68  E-value=1.3e-07  Score=58.60  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=48.5

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e--------cCCCceEEEE-eeeeceEEEEeecCCCCCeeEEEE
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L--------DNSAALSITH-VDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~--------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .+.+|++++|.|..........+.|+|....     +        ....+..+.. .......|+|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5788999999999853345568899985421     1        0122333321 123357899999999999999998


Q ss_pred             EEeCC
Q psy11132         86 VRNMV   90 (243)
Q Consensus        86 ~~~~~   90 (243)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.67  E-value=3.4e-07  Score=57.03  Aligned_cols=81  Identities=17%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--------CC-C------CeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--------PR-F------PVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~-~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|+++.|.|... ......+.|+|+.....        .. .      .+.....-..+++|.|.+++.+|+|.|+
T Consensus         8 ~~~~~G~~V~L~v~~~-p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           8 PQVAEGENVLLLVHNL-PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             CcccCCCCEEEEecCC-CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence            4567899999999642 23345999999632110        00 0      0000000112468999999999999999


Q ss_pred             EEEEccC-cceeeeEEEE
Q psy11132        180 CVASNTA-AQARYSSKLQ  196 (243)
Q Consensus       180 C~~~n~~-g~~~~~~~l~  196 (243)
                      |.+.+.. ......+.|.
T Consensus        87 ~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          87 LQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEeCCccEEEEEEEEE
Confidence            9999977 3445555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.67  E-value=1.5e-07  Score=60.30  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=51.5

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---e---------cCCCceEEEE-eeeeceEEEEeecCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---L---------DNSAALSITH-VDQYNSMLVIDSVSARH   78 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~---------~~~~~~~~~~-~~~~~~~l~i~~~~~~d   78 (243)
                      ..+..+.+.+|++++|.|..........+.|++..  ..   +         ....++.+.. ......+|+|.+++.+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34556678999999999998533345689999832  11   1         0123344332 12335789999999999


Q ss_pred             CeeEEEEEEe
Q psy11132         79 SGNYSCTVRN   88 (243)
Q Consensus        79 ~G~Y~C~~~~   88 (243)
                      +|.|.|.+..
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.67  E-value=3.1e-07  Score=54.69  Aligned_cols=66  Identities=18%  Similarity=0.342  Sum_probs=44.7

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec-c---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-S---FSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +.|.|.+.+++|++.++|+++|..+............ +   ..+.|.+.....++...|+|.|.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999877899999999999998654322211111 1   1245666544455566999999987644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.67  E-value=3.5e-07  Score=57.77  Aligned_cols=81  Identities=20%  Similarity=0.280  Sum_probs=54.3

Q ss_pred             CCCcEEEEEEeecCCC---------CCEEEEEeCC--Eec------------CCC--CCeeEE--eeccceeEEEEeecC
Q psy11132        119 EGARTRVICGVTHGDP---------PLTIRWLKDG--KPL------------SPR--FPVNVS--DLDSFSSLLSINSVS  171 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p---------~~~~~W~~~~--~~~------------~~~--~~~~~~--~~~~~~~~l~i~~~~  171 (243)
                      .|++++|.|......+         ...+.|++..  ...            ...  .+....  ........|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3889999998853221         3679999852  110            000  011111  112345779999999


Q ss_pred             CCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        172 AAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       172 ~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      .+|+|.|.|.+..........+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999999777778888888874

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.67  E-value=3.2e-07  Score=56.21  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=47.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      ..+..|++++|.|... . +...+.|+|+|......... ..........+.|..++.+|+|.|.|....
T Consensus        10 ~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~~-~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHLY-EKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceecc-cccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            5678999999999873 3 55689999988764321100 011123356789999999999999999863

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.66  E-value=3e-07  Score=54.74  Aligned_cols=66  Identities=15%  Similarity=0.269  Sum_probs=44.3

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ++|.|.+.+++|...++|+++|..+............    ...+.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999878888999999999987653322211111    11345666544455566999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.65  E-value=2.6e-07  Score=56.97  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecC--CC----CC-------e-eEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PR----FP-------V-NVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~----~~-------~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..|++++|.|....+.....+.|++....+.  ..    ..       + ...........|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            4699999999874324566899998643221  10    00       0 111122335789999999999999999999


Q ss_pred             ccCcce-eeeEEEEE
Q psy11132        184 NTAAQA-RYSSKLQV  197 (243)
Q Consensus       184 n~~g~~-~~~~~l~v  197 (243)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            887643 45555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.64  E-value=2.7e-07  Score=58.01  Aligned_cols=71  Identities=20%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             CCCCCCcEEEEEEeecCC-CCCEEEEEeCCEe--c---------------CCCCCeeEEeec-cceeEEEEeecCCCCCe
Q psy11132        116 GLPEGARTRVICGVTHGD-PPLTIRWLKDGKP--L---------------SPRFPVNVSDLD-SFSSLLSINSVSAAHSG  176 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~--~---------------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g  176 (243)
                      .+..|+++.|.|.+. +. +...+.|++....  .               ....+....... .....|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYS-GSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEe-CCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            356899999999995 54 6778999984331  0               001112222111 14568999999999999


Q ss_pred             eEEEEEEccCc
Q psy11132        177 EYTCVASNTAA  187 (243)
Q Consensus       177 ~y~C~~~n~~g  187 (243)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.64  E-value=4.8e-07  Score=53.15  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             ccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         20 TLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      .+..|++++|+|....+ .|.+.++|...+.....       .......+|.+..+...|+|.++|.+..........+.
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            47789999999998433 33459999976544221       11123678999999999999999999755444444455


Q ss_pred             EEE
Q psy11132         99 LIV  101 (243)
Q Consensus        99 l~v  101 (243)
                      +.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.63  E-value=2.9e-07  Score=58.31  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC--------------C--CCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS--------------P--RFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~--------------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|++++|.|.+. + +...+.|||...  ...              .  ..+............|.|.+++.+|+|
T Consensus         8 ~~v~~G~~v~l~C~~~-~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           8 LIKGRGQSVTLRCSQT-S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             eEEcCCCcEEEEEEEC-C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            5578999999999984 5 678899998532  110              0  011111111123578999999999999


Q ss_pred             eEEEEEEccC
Q psy11132        177 EYTCVASNTA  186 (243)
Q Consensus       177 ~y~C~~~n~~  186 (243)
                      .|.|.+.+..
T Consensus        86 ~Y~Ca~~~~~   95 (110)
T cd05899          86 VYLCASSLGG   95 (110)
T ss_pred             EEEEEeeCCC
Confidence            9999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.62  E-value=3.1e-07  Score=56.85  Aligned_cols=68  Identities=16%  Similarity=0.319  Sum_probs=46.3

Q ss_pred             ccccCCeEEEEEEeeCC-CCCceeEEEECCe--eec------------CCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132         20 TLNVGERASLICSITKG-DIPLTIKWLKDGR--YLD------------NSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .+.+|++++|.|.+... .....+.||+...  ...            ...++..... .....|+|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-GNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCChhhCEEEEE
Confidence            47899999999998532 1445799998432  110            0123333222 235789999999999999999


Q ss_pred             EEEe
Q psy11132         85 TVRN   88 (243)
Q Consensus        85 ~~~~   88 (243)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            8864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.61  E-value=1.2e-06  Score=54.02  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEc-cCcceeeeEEEEE
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  197 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~l~v  197 (243)
                      ....|.|.+++.+|.|.|.|.+.+ +.|+.+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            347899999999999999999999 6787777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.61  E-value=3.3e-07  Score=56.04  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCC--------------CeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--------------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      |++++|.|... ......+.|++.........              .+...........|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~-~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNL-PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccC-CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            78999999884 56667999998654322110              0000000112377999999999999999999987


Q ss_pred             Ccc-eeeeEEE
Q psy11132        186 AAQ-ARYSSKL  195 (243)
Q Consensus       186 ~g~-~~~~~~l  195 (243)
                      .+. ....+.|
T Consensus        80 ~~~~~~~~~~l   90 (92)
T cd05741          80 NGVTENAKFFL   90 (92)
T ss_pred             CCcEEEEEEEE
Confidence            643 3344444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.60  E-value=6.3e-07  Score=55.34  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEe----c---C--C------C--CCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKP----L---S--P------R--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~----~---~--~------~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      |++++|.|..........+.|++....    +   .  .      .  .+............|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998743322347999974321    0   0  0      0  01111112234577999999999999999998


Q ss_pred             E-ccCcceeeeEEEEE
Q psy11132        183 S-NTAAQARYSSKLQV  197 (243)
Q Consensus       183 ~-n~~g~~~~~~~l~v  197 (243)
                      . .+.|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 46677777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.60  E-value=2.6e-07  Score=56.88  Aligned_cols=71  Identities=21%  Similarity=0.348  Sum_probs=48.3

Q ss_pred             ccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCc-eEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAA-LSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..|+.+.|.|.+.+..| .+.+.|+++|..+..... ........    ..+.|.+......+.|.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            46899999999975546 468999999998865432 11111111    1245666666566999999999986553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.58  E-value=5.1e-07  Score=55.58  Aligned_cols=71  Identities=27%  Similarity=0.431  Sum_probs=48.4

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCC-eeEE-eeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-VNVS-DLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~-~~~~-~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..|+.+.|.|.+.+..| .+.++|+++|..+..... .... ..++.   .+.|.+.....++.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            36899999999964446 579999999998875542 1111 11111   244666655556899999999997653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.57  E-value=1.1e-06  Score=55.86  Aligned_cols=75  Identities=13%  Similarity=0.252  Sum_probs=48.6

Q ss_pred             CCCCCCCcEEEEEEeecCC---CCCEEEEEe---------------CCEecCCC-----CCeeEEee-ccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHGD---PPLTIRWLK---------------DGKPLSPR-----FPVNVSDL-DSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~---------------~~~~~~~~-----~~~~~~~~-~~~~~~l~i~~~  170 (243)
                      ..+..|+.+.|.|......   +...+.|.+               +|......     .+...... .....++.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            4457899999999986432   345899933               22222100     11111111 233577999999


Q ss_pred             CCCCCeeEEEEEEccCcce
Q psy11132        171 SAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~  189 (243)
                      +.+|.|.|+|.+.|..+..
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CcccCEEEEEEEEcCCCcC
Confidence            9999999999999987643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.55  E-value=3.4e-07  Score=58.36  Aligned_cols=74  Identities=23%  Similarity=0.392  Sum_probs=49.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCe-----eec--------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGR-----YLD--------------NSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~--------------~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      +..+.+.+|+++.|.|..........+.|++...     .+.              ...+..+... .....+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4456688999999999985223445899998322     111              0112222111 1234689999999


Q ss_pred             CCCCeeEEEEEEeC
Q psy11132         76 ARHSGNYSCTVRNM   89 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~   89 (243)
                      .+|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.54  E-value=1.8e-06  Score=52.73  Aligned_cols=77  Identities=17%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CcEEEEEEeecCCCCCEEEEEeCCE----ecC-----------CC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        121 ARTRVICGVTHGDPPLTIRWLKDGK----PLS-----------PR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~~~~W~~~~~----~~~-----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ++++|.|..........++|.+...    .+.           ..  .+............|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4688999885333455899987421    110           00  111121222335789999999999999999975


Q ss_pred             -ccCcceeeeEEEEE
Q psy11132        184 -NTAAQARYSSKLQV  197 (243)
Q Consensus       184 -n~~g~~~~~~~l~v  197 (243)
                       .+.|+.+.++.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             57788888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.51  E-value=1.4e-06  Score=58.69  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=60.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC----------CC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS----------PR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      ..+.+|+++.|.|....+...+.+.|+|....+.          ++  ++..........+.+.|.+++.+|+|.|.|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4568899999999974355678999998643211          11  11222222334578999999999999999998


Q ss_pred             Ec-cCc-ceeeeEEEEEEee
Q psy11132        183 SN-TAA-QARYSSKLQVKGN  200 (243)
Q Consensus       183 ~n-~~g-~~~~~~~l~v~~~  200 (243)
                      .- +.| ..+....|.|.+.
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EecCCCCCceeEEEEEEEch
Confidence            75 456 6788888888843

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.50  E-value=2.7e-05  Score=59.11  Aligned_cols=159  Identities=16%  Similarity=0.200  Sum_probs=99.1

Q ss_pred             EEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeC
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKD  143 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~  143 (243)
                      .|.|..++...+|.|+-...+..+.  ....+++....+|.+...+   ..+..|+...-.|.+.+.+|+  ..+.||+|
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4999999999999999997765553  3455677777778766554   447889999999999777774  47999999


Q ss_pred             CEecCCCCCe---eEEeeccce--eEEEEeecCCC-CCeeEEEEEEccCcce-eee----EEEEEEeecCCCCCeeeeec
Q psy11132        144 GKPLSPRFPV---NVSDLDSFS--SLLSINSVSAA-HSGEYTCVASNTAAQA-RYS----SKLQVKGNLNRLPPSYTLVF  212 (243)
Q Consensus       144 ~~~~~~~~~~---~~~~~~~~~--~~l~i~~~~~~-d~g~y~C~~~n~~g~~-~~~----~~l~v~~~~~~~~p~~~~~~  212 (243)
                      +..+......   .....++..  +++.+.....+ ..-+.+|.+.-..+.. .+.    ..-.|.     .+|.+++.-
T Consensus       260 g~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-----~~P~Isv~F  334 (466)
T PHA03270        260 GDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-----PRPTIEMEF  334 (466)
T ss_pred             CccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-----cCCeEEEEE
Confidence            9988642221   111122222  33333332211 1237899988644332 222    233344     677777765


Q ss_pred             cc-eeeeccCccccc---ccceEEeCCe
Q psy11132        213 SQ-ASYMSTSYYSFE---QDSWMIDNEN  236 (243)
Q Consensus       213 ~~-~~~~~~~~~~~~---~~~W~~~~~~  236 (243)
                      ++ ..++  +....+   .+.|+.+++.
T Consensus       335 ~dG~AVC--tA~CVPegV~l~W~V~D~~  360 (466)
T PHA03270        335 GGDEAVC--TAACVPEGVTLAWLLGADP  360 (466)
T ss_pred             eCCEEEE--eccccCCCCEEEEEecCCC
Confidence            43 3333  333333   7899887754

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.50  E-value=2.6e-06  Score=50.11  Aligned_cols=77  Identities=16%  Similarity=0.314  Sum_probs=53.3

Q ss_pred             CCCCCCCcEEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+..|++++|+|....+ .|.+.+.|+..+...-..       ......+|.+.+++..|+|..+|.+..........+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            346789999999998433 334599999755442211       111246789999999999999999987644455555


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .+.|.
T Consensus        82 ~V~Vl   86 (88)
T cd07694          82 DIKVL   86 (88)
T ss_pred             eEEEE
Confidence            66554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.49  E-value=3.7e-06  Score=52.15  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=48.4

Q ss_pred             cEEEEEEeecCCC--CCEEEEEeCCEe-----c---C--------CC--CCeeEEe-eccceeEEEEeecCCCCCeeEEE
Q psy11132        122 RTRVICGVTHGDP--PLTIRWLKDGKP-----L---S--------PR--FPVNVSD-LDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       122 ~~~l~C~~~~~~p--~~~~~W~~~~~~-----~---~--------~~--~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ++.|.|......+  ...+.|++....     +   .        ..  .+..+.. .......|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            5789998753221  348899973211     0   0        00  1112211 12235679999999999999999


Q ss_pred             EEEc-cCcceeeeEEEEE
Q psy11132        181 VASN-TAAQARYSSKLQV  197 (243)
Q Consensus       181 ~~~n-~~g~~~~~~~l~v  197 (243)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 6677777777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.49  E-value=2e-06  Score=53.26  Aligned_cols=68  Identities=10%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             CCCCCCcEEEEEEeecCC--CCCEEEEEeCCE--ecC-----------C-CCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        116 GLPEGARTRVICGVTHGD--PPLTIRWLKDGK--PLS-----------P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~--~~~-----------~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      .+.+|++++|.|... +.  ....+.||+...  ...           . ..+... ........|.|.+++.+|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~-~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~-~~~~~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGS-SGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSG-SKSGNTASLTISGAQTEDEADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEc-CCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEE-EccCCEEEEEECCCChhhCEEEE
Confidence            467899999999984 43  456799997432  111           0 011111 12234567999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+.+.
T Consensus        80 C~~~~~   85 (98)
T cd04984          80 CQVWDS   85 (98)
T ss_pred             EEEccC
Confidence            998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.48  E-value=1.5e-06  Score=55.58  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=47.8

Q ss_pred             CCCCCCCcEEEEEEeecC--CCCCEEEEEeCCE--ec------C-----------CCCCeeEEeecc-ceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHG--DPPLTIRWLKDGK--PL------S-----------PRFPVNVSDLDS-FSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~~--~~------~-----------~~~~~~~~~~~~-~~~~l~i~~~~~  172 (243)
                      ..+.+|++++|.|.+. +  .+...+.||+...  ..      .           ...+........ ....|.|.+++.
T Consensus         8 ~~~~~G~~v~l~C~~~-~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           8 ITREESKSVTISCKVS-GIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             EEeCCCCCEEEEEEEe-CCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            4567899999999984 5  5678999998421  11      0           011122222221 457899999999


Q ss_pred             CCCeeEEEEEEcc
Q psy11132        173 AHSGEYTCVASNT  185 (243)
Q Consensus       173 ~d~g~y~C~~~n~  185 (243)
                      +|+|.|.|.+...
T Consensus        87 ~Dsg~Y~C~~~~~   99 (116)
T cd04982          87 EDSATYYCAYWES   99 (116)
T ss_pred             HHCEEEEEEEecC
Confidence            9999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.48  E-value=8e-07  Score=55.95  Aligned_cols=68  Identities=22%  Similarity=0.317  Sum_probs=44.8

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e------cC-----------CCceEEEEe-eeeceEEEEeecCC
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L------DN-----------SAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------~~-----------~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      .+.+|++++|.|.+........+.|||....     +      ..           ..++.+... ......|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            4788999999999853334458999984321     0      00           112222111 12246799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999875

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.47  E-value=1.3e-06  Score=56.09  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-----CCceeEEEECCee------e--cC---------CCceEEE-EeeeeceEEEEe
Q psy11132         16 NPERTLNVGERASLICSITKGD-----IPLTIKWLKDGRY------L--DN---------SAALSIT-HVDQYNSMLVID   72 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~v~W~~~~~~------~--~~---------~~~~~~~-~~~~~~~~l~i~   72 (243)
                      |..+.+.+|+.|+|.|......     ....+.||+....      +  ..         ..++.+. .......+|+|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4556788999999999874221     1346999985321      1  00         1233322 123345789999


Q ss_pred             ecCCCCCeeEEEEEEeC
Q psy11132         73 SVSARHSGNYSCTVRNM   89 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~   89 (243)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998753

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.46  E-value=8.6e-07  Score=54.90  Aligned_cols=83  Identities=20%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             CCCccCCCC-CcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCce-EEEEe-e---eeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNP-ERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAAL-SITHV-D---QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~-~~~~~-~---~~~~~l~i~~~~~~d~G~   81 (243)
                      ||.+.+.+. .....+++.++|.|.+.+.+| ...++|+++|..+...... ..... +   ...+.|.+..-...+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            344443322 223446788999999987666 5699999999987532111 11111 1   112345554444445679


Q ss_pred             EEEEEEeCCC
Q psy11132         82 YSCTVRNMVA   91 (243)
Q Consensus        82 Y~C~~~~~~~   91 (243)
                      |+|.+.+...
T Consensus        81 ~sC~V~H~~l   90 (100)
T cd07699          81 YTCEVTHEGL   90 (100)
T ss_pred             EEEEEEecCC
Confidence            9999987654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.45  E-value=7.9e-07  Score=55.05  Aligned_cols=71  Identities=21%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ...++.+.|.|.+.+.+| ...+.|+++|..+......  .....++.   .+.|.+..-..++...|+|.+.....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            445788999999976677 7799999999988643211  11111221   23455544444456799999998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03376 BARF1; Provisional

Probab=98.44  E-value=1.2e-05  Score=54.25  Aligned_cols=114  Identities=17%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             CCCCCCCcEEEEEEee--cCCCCCEEEEEeCCE----ec-C--------CCCC---eeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVT--HGDPPLTIRWLKDGK----PL-S--------PRFP---VNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~----~~-~--------~~~~---~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      .....|+.+.|+|.-.  ...+...+.|+|.+.    .+ .        +...   ....-.+..+..|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            4556899999999763  122466899999432    10 0        0000   111111234677999999999999


Q ss_pred             eEEEEEEccCcceeee-----EE---EEEEeecCCCCCeeeeeccceeeeccCccccc--ccceEEeC
Q psy11132        177 EYTCVASNTAAQARYS-----SK---LQVKGNLNRLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDN  234 (243)
Q Consensus       177 ~y~C~~~n~~g~~~~~-----~~---l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~  234 (243)
                      .|+|.+.-......+.     +.   |.|+.+-...|-      .+...+.|.+-+||  .++|+-+.
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~------~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD------FSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC------CCeeEEEEecCCcCCchheecccc
Confidence            9999998755332222     22   444422111221      34455677766665  78997663

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.43  E-value=4.4e-06  Score=51.11  Aligned_cols=81  Identities=21%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEeee-eceEEEEeecCCCCCeeEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVDQ-YNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ||.+.+.+....   |+.++|.|.+.+..|. ..++|.+++..+...... ....... .........+...+.+.|+|.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            555555443322   7789999999755565 499999999643322111 1111111 111222233445578899999


Q ss_pred             EEeCCCc
Q psy11132         86 VRNMVAE   92 (243)
Q Consensus        86 ~~~~~~~   92 (243)
                      +.+....
T Consensus        79 V~H~~~~   85 (93)
T cd07698          79 VEHSGLK   85 (93)
T ss_pred             EEeCCCC
Confidence            9876543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.42  E-value=4.1e-05  Score=59.00  Aligned_cols=163  Identities=17%  Similarity=0.209  Sum_probs=99.4

Q ss_pred             ceEEEEeecCCCCCeeEEEEEEeCCC---cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEE
Q psy11132         66 NSMLVIDSVSARHSGNYSCTVRNMVA---EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRW  140 (243)
Q Consensus        66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W  140 (243)
                      ...|+|.+++..++|.|+-++.+...   .....+++.+..+|.+...+   ..+..|+...-.|.+.+.+|+  ..+.|
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEE
Confidence            46799999999999999877654332   23456677777778665544   447899999999999776774  47999


Q ss_pred             EeCCEecCCCCCee--EEeecc-c--eeEEEEeecCCCC--CeeEEEEEEccCcce-e----eeEEEEEEeecCCCCCee
Q psy11132        141 LKDGKPLSPRFPVN--VSDLDS-F--SSLLSINSVSAAH--SGEYTCVASNTAAQA-R----YSSKLQVKGNLNRLPPSY  208 (243)
Q Consensus       141 ~~~~~~~~~~~~~~--~~~~~~-~--~~~l~i~~~~~~d--~g~y~C~~~n~~g~~-~----~~~~l~v~~~~~~~~p~~  208 (243)
                      |+|+.++.......  ....++ .  .++|.+......|  .-+.+|.+.-..+.. .    .+..-.|.     .+|.+
T Consensus       365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-----~~PtI  439 (566)
T PHA03269        365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-----PFPNV  439 (566)
T ss_pred             EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc-----cCCeE
Confidence            99998887432211  111222 1  2344442221122  336799988654332 2    22233344     67777


Q ss_pred             eeecc-ceeeecc--CcccccccceEEeCCe
Q psy11132        209 TLVFS-QASYMST--SYYSFEQDSWMIDNEN  236 (243)
Q Consensus       209 ~~~~~-~~~~~~~--~~~~~~~~~W~~~~~~  236 (243)
                      ++.-+ ...+++.  -..+.-.+.|+.+++.
T Consensus       440 Sm~FedG~AVCtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        440 SIEIIDGHIVCLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             EEEEeCCEEEEecccccCCCceEEEEecCCC
Confidence            77654 4444432  2223337899887754

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.41  E-value=2.2e-06  Score=53.89  Aligned_cols=69  Identities=14%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCE--e---cC-------C--CCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGK--P---LS-------P--RFPVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~--~---~~-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|.+ .+.. ...+.||+...  .   +.       .  ..+... ........|.|.+++.+|+|.|.
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~~~~~Dsg~Y~   87 (106)
T cd04980          10 LSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSG-SGSGTDFTLTISRVEPEDAAVYY   87 (106)
T ss_pred             EEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEE-eccCCEEEEEECCCChHHCEEEE
Confidence            456789999999998 4544 57899997431  1   00       0  011111 11223467999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T cd04980          88 CQQYGT   93 (106)
T ss_pred             EEEeCC
Confidence            999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.39  E-value=3.1e-06  Score=53.19  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=33.4

Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      ....|.|.+++.+|+|.|.|.+..........++|.|.+
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            357899999999999999999999776677888888764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.37  E-value=2.5e-06  Score=51.79  Aligned_cols=69  Identities=25%  Similarity=0.410  Sum_probs=44.7

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      |+.+.|.|.+.+++|.+.+.|+.++..+............    ...+.|.+..-...+...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7799999998889999999999999877211111111111    11245666544445566999999987553

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.37  E-value=1e-05  Score=51.03  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=34.5

Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      ....|.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            357899999999999999999999888888888888874

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.36  E-value=5e-06  Score=53.16  Aligned_cols=74  Identities=15%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeCCE------ecC---C-------CCCe----eEEe-eccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKDGK------PLS---P-------RFPV----NVSD-LDSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~------~~~---~-------~~~~----~~~~-~~~~~~~l~i~~~  170 (243)
                      ..+..|++++|.|......+   ...+.|++...      .+.   .       ...+    .... .......|.|.++
T Consensus         8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   87 (116)
T cd05715           8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL   87 (116)
T ss_pred             EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence            34568999999998853322   25699986321      000   0       0000    0010 1122467999999


Q ss_pred             CCCCCeeEEEEEEccCcc
Q psy11132        171 SAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~  188 (243)
                      +.+|+|.|.|.+.|....
T Consensus        88 ~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          88 QFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             CcccCEEEEEEEEeCCCC
Confidence            999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.35  E-value=6e-06  Score=52.64  Aligned_cols=74  Identities=20%  Similarity=0.344  Sum_probs=46.4

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeC----CEe--c----CC-----C----CCeeEE-eeccceeEEEEeecC
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKD----GKP--L----SP-----R----FPVNVS-DLDSFSSLLSINSVS  171 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~----~~~--~----~~-----~----~~~~~~-~~~~~~~~l~i~~~~  171 (243)
                      ..+.+|+++.|.|......+   ...+.|++.    +..  +    ..     .    .+.... ........|.|.+++
T Consensus         8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            45678999999999753322   246999752    111  1    00     0    000111 111234679999999


Q ss_pred             CCCCeeEEEEEEccCcc
Q psy11132        172 AAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       172 ~~d~g~y~C~~~n~~g~  188 (243)
                      .+|+|.|.|.+.|..+.
T Consensus        88 ~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          88 PTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             hhhCEEEEEEEEeCCCC
Confidence            99999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.33  E-value=1.2e-05  Score=48.85  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=43.4

Q ss_pred             cccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEeeeece-EEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQYNS-MLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +..|+..+|.|.+.+.+| ...++|.+||..+............+... ......+...+...|+|.+.+...
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            345777899999976555 45899999999876211111222221111 122224456677799999987543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.32  E-value=4e-06  Score=51.89  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-------------CCCCCeeEE-eeccceeEEEEeecCCCCCeeEEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-------------SPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-------------~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      .+.+|++++|.|..........+.|++.....             ....+.... ........|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            35689999999987433456789999854211             001112221 1123457899999999999999999


Q ss_pred             EEccC
Q psy11132        182 ASNTA  186 (243)
Q Consensus       182 ~~n~~  186 (243)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            98754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.31  E-value=1.3e-05  Score=49.01  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CcEEEEEEeecCCCCCEEEEEeCCE----ec-----------CCC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        121 ARTRVICGVTHGDPPLTIRWLKDGK----PL-----------SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~~~~W~~~~~----~~-----------~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      +.++|.|..........++|.+...    .+           ...  .+............|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            3578899874333466788987432    11           011  111111111235789999999999999999997


Q ss_pred             c-cCcceeeeEEE
Q psy11132        184 N-TAAQARYSSKL  195 (243)
Q Consensus       184 n-~~g~~~~~~~l  195 (243)
                      . +.|+..+.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 56766666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.28  E-value=1.7e-05  Score=48.46  Aligned_cols=71  Identities=18%  Similarity=0.416  Sum_probs=43.3

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCc-eEEEEeeee-ceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAA-LSITHVDQY-NSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+|+.++|.|.+.+..|. ..+.|+++|..+..... .......++ ........+...+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            368899999999876665 48999999998765311 111111111 111112233445666999999876544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.28  E-value=9e-06  Score=47.50  Aligned_cols=65  Identities=20%  Similarity=0.443  Sum_probs=40.7

Q ss_pred             eEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEee----eeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         26 RASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        26 ~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .++|.|.+.+..|. ..+.|+++|..+...... ......    ...+.|.+......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899999866666 699999999875432211 111111    112455555545567789999998654

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.27  E-value=4.9e-06  Score=50.46  Aligned_cols=69  Identities=29%  Similarity=0.515  Sum_probs=45.3

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-cc---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      |+.+.+.|.+..++|++.++|+.++..+........... .+   ..+.|.+..-..++...++|.|.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            779999999889999999999999887722111111111 11   1355666544444566999999997654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.26  E-value=1.6e-05  Score=48.54  Aligned_cols=68  Identities=18%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             CCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCC--eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ++.+.|.|.+.+.+|. ..++|++++..+.....  ......++.........+...+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            7889999999654664 49999999964332211  11111121112222233444578899999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.26  E-value=0.00044  Score=52.50  Aligned_cols=167  Identities=14%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             eeceEEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEc-CCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEE
Q psy11132         64 QYNSMLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNV-PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTI  138 (243)
Q Consensus        64 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~  138 (243)
                      .....|.|+++...++|.|+-..++....  ..+.+.+.+.. +|.+...+   ..+..|+...-.|.+.+-+|+  ..+
T Consensus       204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a---~PVL~Ge~YkAtC~vAnYYPP~Svrl  280 (490)
T PHA03271        204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA---PPVLSGENYKASCIVRHFYPPGSVYV  280 (490)
T ss_pred             cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEE
Confidence            34578999999999999776666654443  23334444443 44455444   347789999999999776774  479


Q ss_pred             EEEeCCEecCCCCCeeE-----Eeeccce--eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee
Q psy11132        139 RWLKDGKPLSPRFPVNV-----SDLDSFS--SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV  211 (243)
Q Consensus       139 ~W~~~~~~~~~~~~~~~-----~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~  211 (243)
                      .||++|...........     ...++.+  +++.+.+...+..-..+|.+.-..+....+..-.+... ...+|.+++.
T Consensus       281 rWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~-VY~~P~ISv~  359 (490)
T PHA03271        281 SWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPT-VYHHPRISLA  359 (490)
T ss_pred             EEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCc-cccCCeEEEE
Confidence            99999988765432211     1222222  33434333333344899999865543322221111111 1157777765


Q ss_pred             cc-ceeeeccCccccc---ccceEEeCCe
Q psy11132        212 FS-QASYMSTSYYSFE---QDSWMIDNEN  236 (243)
Q Consensus       212 ~~-~~~~~~~~~~~~~---~~~W~~~~~~  236 (243)
                      -. ..+++  +....|   .++|+.+++.
T Consensus       360 FedG~AVC--tA~CVP~gV~lrWlVgD~p  386 (490)
T PHA03271        360 FKDGYAIC--TIECVPSGITVRWLVHDEP  386 (490)
T ss_pred             EeCCEEEE--eccccCCCcEEEEEecCCC
Confidence            44 34444  333332   7899887754

>cd00096 Ig Immunoglobulin domain

Probab=98.25  E-value=9e-06  Score=46.48  Aligned_cols=63  Identities=35%  Similarity=0.575  Sum_probs=44.8

Q ss_pred             EEEEEEeeCCCCCceeEEEECCeeecCCCce---EEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         27 ASLICSITKGDIPLTIKWLKDGRYLDNSAAL---SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      +.|.|.+. +.+...+.|++++.........   ...........|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEec-CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899996 4677799999988765443211   111112235789999999999999999998755

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.24  E-value=3.8e-05  Score=46.90  Aligned_cols=71  Identities=21%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             CCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCC-ee-EEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        118 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP-VN-VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~-~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..|+..+|.|.+.+.+|. ..+.|+++|..+..... .. ....++.......-.+..++...|+|.+......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            468899999999766774 48999999998765411 11 1111211121222233445666999999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.24  E-value=1.8e-05  Score=46.20  Aligned_cols=64  Identities=23%  Similarity=0.535  Sum_probs=40.5

Q ss_pred             EEEEEEeecCCCC-CEEEEEeCCEecCCCCCee-E-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        123 TRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN-V-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       123 ~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~-~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ++|.|.+.+.+|+ +.+.|+++|..+....... . ...++.   .+.|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999766675 6999999998754332111 1 111211   2445555445566779999998754

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.24  E-value=6.8e-06  Score=51.38  Aligned_cols=66  Identities=21%  Similarity=0.435  Sum_probs=44.0

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCe----e---e---cC------------CCceEEEEeeeeceEEEEeecCCC
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGR----Y---L---DN------------SAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~----~---~---~~------------~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      .+.+|++|+|.|.+. ......+.|++...    .   +   ..            ..++.... ......|+|.+++.+
T Consensus         2 ~v~~G~~vtL~C~~~-~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVL-NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR-SSNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEec-CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe-cCCEEEEEECCCCHH
Confidence            467899999999884 33445799998432    1   1   00            01111111 123568999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |+|.|.|.+.
T Consensus        80 DsgtY~Ca~~   89 (104)
T cd05720          80 NEGYYFCSVA   89 (104)
T ss_pred             HCEEEEEEEc
Confidence            9999999876

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.23  E-value=8.5e-06  Score=51.27  Aligned_cols=69  Identities=23%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-----------CC-----------CCCeeEE-eeccceeEEEEeecCC
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-----------SP-----------RFPVNVS-DLDSFSSLLSINSVSA  172 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-----------~~-----------~~~~~~~-~~~~~~~~l~i~~~~~  172 (243)
                      .+.+|++++|.|.+........+.||+.....           ..           ..+.... ........|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            35789999999998422345689999743210           00           0011111 1122245799999999


Q ss_pred             CCCeeEEEEEEc
Q psy11132        173 AHSGEYTCVASN  184 (243)
Q Consensus       173 ~d~g~y~C~~~n  184 (243)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.22  E-value=9.1e-06  Score=51.42  Aligned_cols=74  Identities=18%  Similarity=0.327  Sum_probs=46.0

Q ss_pred             cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce---EEEEe-e--eeceEEEEeecCCCC-CeeEEEEEEeCCCc
Q psy11132         21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL---SITHV-D--QYNSMLVIDSVSARH-SGNYSCTVRNMVAE   92 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~---~~~~~-~--~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~   92 (243)
                      +.+++.++|.|.+.+..|. ..++|++|+..+......   ..... .  ...+.|.+......+ ...|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            4467789999999876666 599999999887643211   11111 0  113455555443334 45999999876554


Q ss_pred             ce
Q psy11132         93 DT   94 (243)
Q Consensus        93 ~~   94 (243)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            33

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd00096 Ig Immunoglobulin domain

Probab=98.21  E-value=1.5e-05  Score=45.53  Aligned_cols=63  Identities=46%  Similarity=0.735  Sum_probs=45.4

Q ss_pred             EEEEEEeecCCCCCEEEEEeCCEecCCCCCe---eEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      +.|.|.+. +.+...+.|++++.........   ...........|.+.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEec-CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            36889994 5788899999988776543321   111122235678999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG1480|consensus

Probab=98.21  E-value=3.3e-07  Score=73.79  Aligned_cols=174  Identities=18%  Similarity=0.264  Sum_probs=98.9

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee------eceEEEEeecCCCCC---e
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ------YNSMLVIDSVSARHS---G   80 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~---G   80 (243)
                      |.+...+++..+..|.++.|.|.+. ..+  .+...-++.-+...........+.      ..-+..|.....++.   .
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a~-~a~--~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKAN-PAT--QIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             ceeeecCCccceecCCCccceecCC-ccc--ccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence            5566778888899999999999973 322  333222222222111111111110      012233333333332   2


Q ss_pred             eEEE--EEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         81 NYSC--TVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        81 ~Y~C--~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      .|.|  .+....|.. ++...+.+.+.............+..+..+++.|....+.|...+.|++++..+.+....... 
T Consensus       102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~-  180 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA-  180 (909)
T ss_pred             ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh-
Confidence            5654  666555521 111111221111111111122457778889999988788899999999999888773322221 


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                         ....+.+..+...|.|+|+|+|.|..+...
T Consensus       181 ---~d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  181 ---SDHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             ---hcCCccccchhhhhcccceeeeehhhcccc
Confidence               134578889999999999999999887653

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.21  E-value=1.2e-05  Score=50.94  Aligned_cols=74  Identities=15%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             CCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCe--eEEeec--cc--eeEEEEeecCCCC-CeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV--NVSDLD--SF--SSLLSINSVSAAH-SGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~--~~~~~~--~~--~~~l~i~~~~~~d-~g~y~C~~~n~~g~  188 (243)
                      +..++.++|.|.+.+.+|. ..+.|++++..+......  ......  .+  .+.|.+......+ ...|+|.+......
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            3456789999999766775 599999999887643221  111111  11  2445554433334 45899999987654


Q ss_pred             ee
Q psy11132        189 AR  190 (243)
Q Consensus       189 ~~  190 (243)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            44

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.21  E-value=1.4e-05  Score=48.77  Aligned_cols=72  Identities=17%  Similarity=0.356  Sum_probs=44.2

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEe-eccc--eeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSD-LDSF--SSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~-~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      .++.+.|.|.+.+.+| ...++|+++|..+......  .... .+.+  .+.|.+..-...+...|+|.+.+...+..
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   90 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE   90 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence            4566899999976677 4799999999986432111  1111 1111  23344443333456799999998765543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.21  E-value=1.3e-05  Score=51.24  Aligned_cols=71  Identities=20%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--e---c-------C-C-CCCeeEEe-eccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--P---L-------S-P-RFPVNVSD-LDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~---~-------~-~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+..|+++.|.|..........+.|++...  .   +       . . ..+..... .......|.|.+++.+|+|.|.
T Consensus         9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~   88 (116)
T cd07706           9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF   88 (116)
T ss_pred             eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence            4568999999999985333567899997321  1   0       0 0 11222221 1233577999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+...
T Consensus        89 C~~~~~   94 (116)
T cd07706          89 CALSTL   94 (116)
T ss_pred             EEEECC
Confidence            999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.20  E-value=9.2e-06  Score=51.65  Aligned_cols=82  Identities=17%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE-----ecC---CC-----------CCeeEEe-eccceeEEEEeecCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK-----PLS---PR-----------FPVNVSD-LDSFSSLLSINSVSAAH  174 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-----~~~---~~-----------~~~~~~~-~~~~~~~l~i~~~~~~d  174 (243)
                      ..+.+|+++.|.|..........+.|++...     .+.   ..           .+..... .......|.|.+++.+|
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D   90 (114)
T PF07686_consen   11 VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD   90 (114)
T ss_dssp             EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred             EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence            4467899999999995234566999998322     111   00           0011111 11235679999999999


Q ss_pred             CeeEEEEEEccC-cceeeeEEEE
Q psy11132        175 SGEYTCVASNTA-AQARYSSKLQ  196 (243)
Q Consensus       175 ~g~y~C~~~n~~-g~~~~~~~l~  196 (243)
                      +|.|.|.+.... ......+.|.
T Consensus        91 sG~Y~C~v~~~~~~~~~~~~~L~  113 (114)
T PF07686_consen   91 SGTYFCQVSTSNEQSFGNGTKLT  113 (114)
T ss_dssp             EEEEEEEEEESSEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCCEECCcEEEE
Confidence            999999999872 2233344444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.19  E-value=0.00034  Score=53.84  Aligned_cols=160  Identities=18%  Similarity=0.228  Sum_probs=98.5

Q ss_pred             eEEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEe
Q psy11132         67 SMLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLK  142 (243)
Q Consensus        67 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~  142 (243)
                      ..|+|..++...+|.|+-...+..+.  ....+++....+|.+...+   ..+..|+...-.|.+.+-+|+  ..+.||+
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~  274 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYK  274 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            45999999999999998776554443  3344555556777766544   447899999999999776774  4799999


Q ss_pred             CCEecCC-CCCeeEE--eecc---ceeEEEEeecCC-CCCeeEEEEEEccCcce-ee----eEEEEEEeecCCCCCeeee
Q psy11132        143 DGKPLSP-RFPVNVS--DLDS---FSSLLSINSVSA-AHSGEYTCVASNTAAQA-RY----SSKLQVKGNLNRLPPSYTL  210 (243)
Q Consensus       143 ~~~~~~~-~~~~~~~--~~~~---~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~-~~----~~~l~v~~~~~~~~p~~~~  210 (243)
                      ++..+.. .......  ..++   ..++|.+..... +..-+.+|.+.-..+.. ..    +..-.|.     .+|.+.+
T Consensus       275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy-----~~P~Is~  349 (486)
T PHA03273        275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVF-----VAPTVSV  349 (486)
T ss_pred             CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccc-----cCCeEEE
Confidence            9998873 2211111  1111   234455554332 33448999988544332 22    2233344     6788777


Q ss_pred             ecc-ceeeeccCcc--cccccceEEeC
Q psy11132        211 VFS-QASYMSTSYY--SFEQDSWMIDN  234 (243)
Q Consensus       211 ~~~-~~~~~~~~~~--~~~~~~W~~~~  234 (243)
                      .-+ ..++++..=+  +--.+.|+.++
T Consensus       350 ~F~~G~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        350 TVEDGDAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EEeCCEEEEecccccCCCeeEEEEccC
Confidence            654 4444433222  22378998776

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.17  E-value=4.1e-05  Score=46.69  Aligned_cols=66  Identities=26%  Similarity=0.416  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .|+.++|.|.+.+.+|. ..++|.++|..+...... ......+.    ...|.+   ...+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence            46668999999865664 689999999987543211 11111111    233433   34556699999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.17  E-value=1.6e-05  Score=50.81  Aligned_cols=73  Identities=14%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-CCceeEEEECC--ee---e---cC-----------CCceEEEEee-eeceEEEEeec
Q psy11132         16 NPERTLNVGERASLICSITKGD-IPLTIKWLKDG--RY---L---DN-----------SAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~---~~-----------~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      +....+.+|++++|.|...... ....+.|||..  +.   +   ..           ..++...... .....|+|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456788999999999874222 23479999832  11   1   00           1222222211 12347999999


Q ss_pred             CCCCCeeEEEEEEe
Q psy11132         75 SARHSGNYSCTVRN   88 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~   88 (243)
                      +.+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.17  E-value=1e-05  Score=50.19  Aligned_cols=71  Identities=24%  Similarity=0.428  Sum_probs=43.2

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEee---cc-c--eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDL---DS-F--SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~---~~-~--~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..|+.++|.|.+.+.+| ...++|+++|..+.......  ....   ++ +  .+.|.+..-...+...|+|.+.....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            345788999999975566 45889999999876432111  1111   11 1  23454533333455689999988654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.16  E-value=5e-05  Score=46.29  Aligned_cols=65  Identities=25%  Similarity=0.428  Sum_probs=41.4

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .|+..+|.|.+.+.+| ...++|.++|..+......  .....++.   .+.|.+   ..++...|+|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence            4566799999976677 5799999999987653221  11111221   123433   3455669999998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.15  E-value=1.6e-05  Score=48.54  Aligned_cols=70  Identities=21%  Similarity=0.327  Sum_probs=42.7

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEeee---eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .++.++|.|.+.+..|. ..+.|.++|..+......  .....+.   ..+.|.+..-...+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45679999999865665 699999999886332110  0111111   1234545433344567999999876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.13  E-value=3.3e-05  Score=46.08  Aligned_cols=67  Identities=24%  Similarity=0.423  Sum_probs=45.3

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe--eccce---eEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD--LDSFS---SLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~--~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .++.+.|.|.+.+.+| ...+.|+++|..+..........  .++..   +.|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            4899999999976677 45899999999887654332222  22222   334444   56667999999986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.13  E-value=1.7e-05  Score=49.27  Aligned_cols=71  Identities=20%  Similarity=0.361  Sum_probs=42.7

Q ss_pred             cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE--EEEe----e--eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS--ITHV----D--QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~----~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +..|+.++|.|.+.+..|. ..++|+++|..+.......  ....    .  ...+.|.+..-...+...|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            3457789999999865554 4889999998875432111  1110    0  0123444433333455689999987654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.10  E-value=9.8e-05  Score=45.14  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             CcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE-Eeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ....+.|.+.+|.|++.++|+++.   ........ ...++   ..+.|.+.....++.-.|+|.+.+........+
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~   89 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF   89 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            456788999889999999999972   11111111 11111   135566654444445599999999875444333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.09  E-value=0.00065  Score=51.89  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEeee-----eceEEEEeec
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQ-----YNSMLVIDSV   74 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~   74 (243)
                      ++|..+.+|.+.+.+.  -+.+|+...-+|.+.+.+|+  ..+.|++|+.++.............     ..+++++...
T Consensus       214 VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~  291 (466)
T PHA03270        214 TRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEAR  291 (466)
T ss_pred             EEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEecccc
Confidence            4677788998887653  37789999999999776765  3899999999885422221111111     1233333322


Q ss_pred             CCC-CCeeEEEEEEeCCCcc-e----eEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132         75 SAR-HSGNYSCTVRNMVAED-T----QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        75 ~~~-d~G~Y~C~~~~~~~~~-~----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  148 (243)
                      ... ..-..+|.+.-..... .    ....-.|..+|.+..      ....|.-+   |.+.--.....+.|+.++....
T Consensus       292 ~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv------~F~dG~AV---CtA~CVPegV~l~W~V~D~~~p  362 (466)
T PHA03270        292 AGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM------EFGGDEAV---CTAACVPEGVTLAWLLGADPAP  362 (466)
T ss_pred             ccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE------EEeCCEEE---EeccccCCCCEEEEEecCCCCC
Confidence            111 1137799876333322 2    122223333333332      22233333   5553222366999998776554


Q ss_pred             CCCCeeEEeec-cceeEEEEe---ecCCCCCeeEEEEEEc
Q psy11132        149 PRFPVNVSDLD-SFSSLLSIN---SVSAAHSGEYTCVASN  184 (243)
Q Consensus       149 ~~~~~~~~~~~-~~~~~l~i~---~~~~~d~g~y~C~~~n  184 (243)
                      ..+.....+.- ..-....|.   .++.+ ..+|+|.+..
T Consensus       363 a~~~~v~~G~C~~~PGlvNlrS~~plSd~-~~eYTCrl~G  401 (466)
T PHA03270        363 AEKAAVAGGPCPGRPGLARVRSALPLSRE-HSEYTCRLVG  401 (466)
T ss_pred             CccceeecccCCCCCCceeeecccccccC-CceEEEEEee
Confidence            43322211110 001111111   22332 4699999864

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.09  E-value=0.00016  Score=44.00  Aligned_cols=68  Identities=25%  Similarity=0.391  Sum_probs=43.3

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe-eEE-eeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..|+...|.|.+.+.+| ...++|+++|..+. .... ... ..+..........+...+...|+|.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            45777799999976566 66899999999877 3221 111 112222222222445667779999998854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.08  E-value=8.9e-05  Score=45.32  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=40.9

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      .....+.|.+.++.|.+.|.|+++.   ............    ...+.|.+.....++...|+|.+.+......
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            4457899999889999999999971   111111110100    1134566654444444599999998765443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.08  E-value=6.4e-05  Score=44.87  Aligned_cols=68  Identities=22%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEE--eeee---ceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITH--VDQY---NSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..++.++|.|.+.+.+|. ..|.|+++|..+..........  .+..   .+.|.+.   ..+...|+|.+.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            348999999999876664 5899999999886544322221  1111   2334443   55666999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.06  E-value=3.4e-05  Score=48.20  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=44.1

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEe----c------CCCCC----------eeE-EeeccceeEEEEeecCCCCC
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKP----L------SPRFP----------VNV-SDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~----~------~~~~~----------~~~-~~~~~~~~~l~i~~~~~~d~  175 (243)
                      +.+|++++|.|.+. ......+.||+....    .      .....          ... .........|.|.+++.+|+
T Consensus         3 v~~G~~vtL~C~~~-~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           3 AELGQKVELKCEVL-NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             ccCCCeEEEEEEec-CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            57899999999883 444567999974421    1      00000          001 01122456799999999999


Q ss_pred             eeEEEEEEc
Q psy11132        176 GEYTCVASN  184 (243)
Q Consensus       176 g~y~C~~~n  184 (243)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.06  E-value=2.1e-05  Score=46.58  Aligned_cols=61  Identities=18%  Similarity=0.419  Sum_probs=38.7

Q ss_pred             eEEEEEEeeCCCCC-ceeEEEECCe--e---ec-------------CCCceEEEEee-eeceEEEEeecCCCCCeeEEEE
Q psy11132         26 RASLICSITKGDIP-LTIKWLKDGR--Y---LD-------------NSAALSITHVD-QYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        26 ~~~l~C~~~~~~~~-~~v~W~~~~~--~---~~-------------~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +++|.|.+...... ..+.|++...  .   +.             ...++.+.... ....+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998643222 4799998431  1   10             11233333221 3457899999999999999996


Q ss_pred             E
Q psy11132         86 V   86 (243)
Q Consensus        86 ~   86 (243)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.04  E-value=4.6e-05  Score=46.71  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             ccccCCeEEEEEEeeCC-CCC-ceeEEEECCeeecC-CCceEEEEeee---eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         20 TLNVGERASLICSITKG-DIP-LTIKWLKDGRYLDN-SAALSITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~-~~~-~~v~W~~~~~~~~~-~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+..|+.++|.|.+.+. .|. ..++|.|+++.... .........+.   ..+.|.+..-...+.-.|+|.+.+....
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            35668999999999865 454 58999998753321 11100001110   1234444433333445899999876543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.02  E-value=3e-05  Score=47.50  Aligned_cols=73  Identities=14%  Similarity=0.245  Sum_probs=41.9

Q ss_pred             CCCCCCcEEEEEEeecC-CC-CCEEEEEeCCEec-CCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        116 GLPEGARTRVICGVTHG-DP-PLTIRWLKDGKPL-SPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~~~~~-~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .+..|+..+|.|.+.+. +| ...++|+|++... ...........++.   .+.|.+..-..++...|+|.+.+....
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            35568999999999755 45 5689999987432 21111111111111   233444433333455899999987543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.00  E-value=7e-05  Score=45.67  Aligned_cols=74  Identities=19%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             CcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       121 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      ....+.|.+.+|.|++.++|+++.......  ......++.   .+.|.+.....+|.-.|+|.+.+........+.+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            356789998889999999999872211110  111111111   35566654444445599999999875544444433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.00  E-value=0.00011  Score=44.89  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      .....+.|.+.++.|...|+|+++....   .........    ...+.|.+.....+|...|+|++.+........+.+
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            3457899998889999999999872111   111101110    113456665444445559999999877554444443


Q ss_pred             E
Q psy11132        100 I  100 (243)
Q Consensus       100 ~  100 (243)
                      .
T Consensus        92 ~   92 (95)
T cd07703          92 T   92 (95)
T ss_pred             E
Confidence            3

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.00  E-value=7.1e-05  Score=45.74  Aligned_cols=67  Identities=12%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE-EEEeeee---ceEEEEeecCCCCCe-eEEEEEEeCC
Q psy11132         21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS-ITHVDQY---NSMLVIDSVSARHSG-NYSCTVRNMV   90 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~G-~Y~C~~~~~~   90 (243)
                      +..+..++|.|.+.+..|. ..++|.++|..+..+.... ....++.   .+.|.   ++.++.| .|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~---vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLT---VTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEE---ECchhCCCeEEEEEEECC
Confidence            4446789999999865564 5899999998865432111 1111111   12333   3333234 5999998744

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.94  E-value=6.5e-05  Score=46.01  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=42.4

Q ss_pred             CCCCCcEEEEEEeecCC-C-CCEEEEEeCCEecCCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGD-P-PLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..++.++|.|.+.+.+ | ...+.|.++|.. ...........++.   .+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44678899999997656 5 568999999875 21111111111211   24455543333445579999998754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.93  E-value=0.0024  Score=48.45  Aligned_cols=115  Identities=15%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             CCCCCcEEEEEEeec-C-CCCCEEEEEeCCEecC-----------------CCCCeeEEee-----ccceeEEEEeecCC
Q psy11132        117 LPEGARTRVICGVTH-G-DPPLTIRWLKDGKPLS-----------------PRFPVNVSDL-----DSFSSLLSINSVSA  172 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~-~-~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~-----~~~~~~l~i~~~~~  172 (243)
                      +..|..+.|.|..+- | ..-....|+--|-++.                 ..+.+.+...     +...++|+|+++..
T Consensus       276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I  355 (500)
T PHA02914        276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI  355 (500)
T ss_pred             eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence            456899999997641 2 2244678875432221                 1122222222     23468899999999


Q ss_pred             CCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCcccc----cccceEEeC
Q psy11132        173 AHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF----EQDSWMIDN  234 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~W~~~~  234 (243)
                      +..|-|.|.|....-+.+..--|.|.+.   +--.+...........|-....    ..+.|.-+|
T Consensus       356 ~N~GCY~~~a~~g~~~~ec~~Cl~V~d~---V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG  418 (500)
T PHA02914        356 NNAGCYEAQAFMGKFKEECRHCFKVADH---VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNG  418 (500)
T ss_pred             EcCCceEEEEecCcchhhhhhheEeccE---EEEEEEeccCceEEEEEEEEecccCCceeEEEEcc
Confidence            9999999999887555544444444311   1111222334555566654443    256777765

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.91  E-value=0.00015  Score=44.30  Aligned_cols=67  Identities=13%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccc--eeEEEEeecCCC-CCeeEEEEEEccC
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSF--SSLLSINSVSAA-HSGEYTCVASNTA  186 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~--~~~l~i~~~~~~-d~g~y~C~~~n~~  186 (243)
                      +..++..+|.|.+.+.+| ...++|.++|..+.......  ....+.+  .+.|.+   ..+ ....|+|.+....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~v---t~~~~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTV---TKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEE---CchhCCCeEEEEEEECC
Confidence            334677899999976666 56899999999865432211  1111111  123333   333 3346999998843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.89  E-value=2.7e-05  Score=49.73  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=46.4

Q ss_pred             ccCCeEEEEEEeeCC----CCCceeEEEECCeeecC---CC---------ceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         22 NVGERASLICSITKG----DIPLTIKWLKDGRYLDN---SA---------ALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~---~~---------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .=+++|.|+|.+..-    .+...|+|..++..+-.   ..         +..+.....++++|.+...+.- .|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            348899999999531    13357999998876521   11         1111222234567888775444 8999999


Q ss_pred             EEeCCCcceeEEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~  102 (243)
                      +.....+.+..+.|...
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99877777777776653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.87  E-value=9.8e-05  Score=45.16  Aligned_cols=67  Identities=13%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEeee---eceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .++.++|.|.+.+..|. ..++|.++|.. ......  .....+.   ..+.|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999765554 58999999997 332110  1111011   12344444332223568999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.85  E-value=0.00015  Score=44.13  Aligned_cols=75  Identities=12%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             CCcccccCCeEEE-EEEeeCCCCCceeEEEECCeeecCCCceEEE--EeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         17 PERTLNVGERASL-ICSITKGDIPLTIKWLKDGRYLDNSAALSIT--HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        17 ~~~~~~~g~~~~l-~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ....+.+|+.+.+ .|.+.++.|...|+|+.+...... ......  ..-...+.+.+...+..|.-.++|.+.+....
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            3455778999999 999988999999999976332111 000000  00011345666545455556999999887553

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.85  E-value=0.0018  Score=50.37  Aligned_cols=170  Identities=15%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceE-EEEeee----eceEEEEeec
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALS-ITHVDQ----YNSMLVIDSV   74 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~   74 (243)
                      +.|.++.+|.+.+.+.  -+.+|+...-.|.+.+.+|+  ..++|++|+..+....... ......    ..++|++...
T Consensus       322 VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~  399 (566)
T PHA03269        322 ITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQ  399 (566)
T ss_pred             EEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCc
Confidence            5677788897776643  37799999999999776665  3899999998876422111 111111    1234444222


Q ss_pred             CCCC--CeeEEEEEEeCCCc-cee----EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCE
Q psy11132         75 SARH--SGNYSCTVRNMVAE-DTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGK  145 (243)
Q Consensus        75 ~~~d--~G~Y~C~~~~~~~~-~~~----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~  145 (243)
                      ...|  .-..+|.+.-.... ...    ...-.|..+|.+..      ....|.-+   |.+. =.|  ...+.|+.++.
T Consensus       400 ~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm------~FedG~AV---CtA~-CVP~~~V~l~WlVgD~  469 (566)
T PHA03269        400 KNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI------EIIDGHIV---CLAK-CVPRGVVHFNWWINDI  469 (566)
T ss_pred             cccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE------EEeCCEEE---Eecc-cccCCCceEEEEecCC
Confidence            1222  23569987533332 222    22223333333322      22334333   6552 222  35899997776


Q ss_pred             ecCCCCCeeEEee-ccceeEEEEee---cCCCC-CeeEEEEEEc
Q psy11132        146 PLSPRFPVNVSDL-DSFSSLLSINS---VSAAH-SGEYTCVASN  184 (243)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~~~l~i~~---~~~~d-~g~y~C~~~n  184 (243)
                      ........ ..+. ...-+...+..   +..+| .-+|+|.+..
T Consensus       470 p~~~~~t~-itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        470 PIEHENSE-ILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             CCCCccce-eeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence            64333221 1111 11112233333   33333 2389999874

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.84  E-value=8.3e-05  Score=41.45  Aligned_cols=49  Identities=27%  Similarity=0.470  Sum_probs=36.3

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      .+.|.|+|.+ +    .+|.|++ |..+....          ..+|.+.....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~-~----tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG-A----TNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC-C----CcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence            3479999975 1    3699999 65554322          35677888888999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.82  E-value=0.00019  Score=43.92  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCC---eeEEeeccc--eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP---VNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~---~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .++.+.|.|.+.+.+| ...++|+++|.. .....   ........+  .+.|.+..-.......|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4677999999976566 568999999997 33211   111111111  2334444332233568999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.82  E-value=0.00012  Score=44.64  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEE-EEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        115 DGLPEGARTRV-ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..+..|+.+.+ .|.+..|.|++.++|+.+.......  ......+   ...+.+.+.....+|.-.++|.+.+..-.
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            34567888888 8999899999999999764332211  0011111   11355666554555555999999987543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.81  E-value=0.0028  Score=48.32  Aligned_cols=136  Identities=15%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEE-----EEee--eeceEEEEeecCC
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSI-----THVD--QYNSMLVIDSVSA   76 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~-----~~~~--~~~~~l~i~~~~~   76 (243)
                      .+.||.+.+.+.  -+.+|+...-+|.+.+.+|+  ..+.|++||..+........     ...+  ...++|++.+...
T Consensus       244 ~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~  321 (490)
T PHA03271        244 CQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGI  321 (490)
T ss_pred             EecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccC
Confidence            346777777643  36789999999999776665  38999999988754332111     1111  1123444433333


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  148 (243)
                      ...-..+|.+.-.......+.  .-...|.+...+.-......|.-+   |.+.--.....+.|.-++...+
T Consensus       322 ~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~FedG~AV---CtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        322 DPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLAFKDGYAI---CTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             CCCCCceEEEEEccCCceeee--ecccCCccccCCeEEEEEeCCEEE---EeccccCCCcEEEEEecCCCCC
Confidence            333488998764333222221  222222222211111222334433   5553222366999997766543

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.80  E-value=7.1e-05  Score=41.44  Aligned_cols=51  Identities=27%  Similarity=0.519  Sum_probs=35.0

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ..|..|+|+|... .  . .+.|.+++..+...           ...+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~-~--~-~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLS-G--D-DIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCC-C--C-CceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCC
Confidence            4689999999853 2  1 39999999655542           1223344444 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.79  E-value=0.0002  Score=46.01  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             CCCCCCCcEEEEEEeecCC-----CCCEEEEEeCCEec--------CCC---------CCeeEE-eeccceeEEEEeecC
Q psy11132        115 DGLPEGARTRVICGVTHGD-----PPLTIRWLKDGKPL--------SPR---------FPVNVS-DLDSFSSLLSINSVS  171 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~~~~~--------~~~---------~~~~~~-~~~~~~~~l~i~~~~  171 (243)
                      ..+..|+.++|.|......     ....+.|++....-        ...         .+.... ........|.|.+++
T Consensus         9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~   88 (119)
T cd05712           9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ   88 (119)
T ss_pred             EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence            4567899999999863221     13568999753210        000         011111 112335679999999


Q ss_pred             CCCCeeEEEEEEcc
Q psy11132        172 AAHSGEYTCVASNT  185 (243)
Q Consensus       172 ~~d~g~y~C~~~n~  185 (243)
                      .+|+|.|.|.+...
T Consensus        89 ~~Dsg~Y~C~~~~~  102 (119)
T cd05712          89 PEDSGKYFFRVELG  102 (119)
T ss_pred             hhhCeEEEEEEEcC
Confidence            99999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.75  E-value=9.4e-05  Score=40.95  Aligned_cols=50  Identities=26%  Similarity=0.410  Sum_probs=34.6

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      .|.+++|+|... +   ..+.|++++..+....           ..+.+.+-. +++|.|.|.+.+
T Consensus         6 sGTtVtlTCP~~-~---~~i~W~~n~~~~~g~~-----------~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLS-G---DDIKWKKNDQVSQGSD-----------EKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCC-C---CCceEEeCCccCCCCC-----------ceEEeeccC-CCCceEEEEeCC
Confidence            589999999752 2   2299999996655421           233344444 889999999964

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.75  E-value=0.00042  Score=42.05  Aligned_cols=71  Identities=24%  Similarity=0.259  Sum_probs=46.4

Q ss_pred             CCCCCCcEEEEEEeecCCCC--CEEEEEeCCEecCCCCCeeEE---eeccceeEEEEeecCCCCCe-eEEEEEEccCc
Q psy11132        116 GLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVS---DLDSFSSLLSINSVSAAHSG-EYTCVASNTAA  187 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  187 (243)
                      .+.+|+.+++.|.+.+++|.  ..+.|+++...+.........   ........+.+.. ..+|.| .|+|.|.-..+
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            45789999999999777775  689999877665543211100   1111234556654 477777 99999976543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.72  E-value=0.00029  Score=45.02  Aligned_cols=69  Identities=16%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCE--ec------CC-----------CCCeeEEeec-cceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGK--PL------SP-----------RFPVNVSDLD-SFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~--~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~  172 (243)
                      ..+.+|++++|.|... +..  ...+.||+...  ..      ..           ..+....... .....|.|.++..
T Consensus         7 ~~v~~G~~vtL~C~~~-~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           7 GLVKPGQSLKLSCKAS-GFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             eEEcCCCCEEEEEEEe-CCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            4567899999999873 322  45799997321  10      00           0111111111 2235699999999


Q ss_pred             CCCeeEEEEEEc
Q psy11132        173 AHSGEYTCVASN  184 (243)
Q Consensus       173 ~d~g~y~C~~~n  184 (243)
                      +|+|.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02982 hypothetical protein; Provisional

Probab=97.70  E-value=0.0069  Score=41.85  Aligned_cols=122  Identities=15%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCe-eec----------C-----CC-c-eEEEEeeeeceEEEEeecCCCC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGR-YLD----------N-----SA-A-LSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-~~~----------~-----~~-~-~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      .++....|++|.|+|....+.......|+.++. .+.          .     +. + .....-+...++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            345567799999999986555556888987542 221          0     00 1 1112223346899999999999


Q ss_pred             CeeEEEEEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132         79 SGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  145 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  145 (243)
                      .|-|+|++....+.. .....|.|+.........      .......+.|-+. ....+-..|..+|.
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVg-S~~~dvp~W~V~GV  172 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVG-SKHGDVPRFIVAGI  172 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEE-eccCCCccEEEeeE
Confidence            999999998766543 346667774322211111      1234556789773 33222128887665

>PHA02633 hypothetical protein; Provisional

Probab=97.70  E-value=0.00014  Score=39.48  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132         66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      ...|.|-++..+|+|.|.|..+|.......++.|.|....
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            5679999999999999999999887777777888876543

>smart00406 IGv Immunoglobulin V-Type

Probab=97.67  E-value=0.00023  Score=42.02  Aligned_cols=60  Identities=18%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             cEEEEEEeecCCCC--CEEEEEeCCEe-----cC-------------CCCCeeEEeec-cceeEEEEeecCCCCCeeEEE
Q psy11132        122 RTRVICGVTHGDPP--LTIRWLKDGKP-----LS-------------PRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       122 ~~~l~C~~~~~~p~--~~~~W~~~~~~-----~~-------------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ++.|.|.+. ....  ..+.|++....     +.             ...+....... .....|.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKAS-GFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEEe-ccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence            468999885 3333  37899874420     00             01111222111 345779999999999999999


Q ss_pred             EE
Q psy11132        181 VA  182 (243)
Q Consensus       181 ~~  182 (243)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            63

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.63  E-value=0.00032  Score=43.01  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             cccCCeEEEEEEeeCCC-C-CceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGD-I-PLTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +..+..++|.|.+.+.. | ...+.|.++|.. ...........+   ...+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44688999999998655 5 469999999875 111110011111   1134555543333444579999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.53  E-value=0.0011  Score=40.19  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             cccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEE---EeeeeceEEEEeecCCCCCe-eEEEEEEe
Q psy11132         21 LNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSIT---HVDQYNSMLVIDSVSARHSG-NYSCTVRN   88 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~   88 (243)
                      +.+|..+++.|.+.+..|.  ..+.|+++...+....-....   ........+++.. +++|.| .|.|.|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            5789999999999877775  689999877665443211100   0011124455554 477777 99999964

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02633 hypothetical protein; Provisional

Probab=97.48  E-value=0.00043  Score=37.65  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      ...|.|-++..+|+|.|.|...|..-....++.+.|..
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            35577888999999999999999887788888888873

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.43  E-value=0.027  Score=43.91  Aligned_cols=131  Identities=15%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEe----e--eeceEEEEee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHV----D--QYNSMLVIDS   73 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~----~--~~~~~l~i~~   73 (243)
                      +.+..+.+|.+.+.+.  -+.+|+...-.|.+.+.+|+  ..+.|++||.++...........    +  ...++|++..
T Consensus       230 VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~  307 (486)
T PHA03273        230 VTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPV  307 (486)
T ss_pred             EEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccC
Confidence            3455578898877643  37799999999999776665  38999999998873222111111    1  1124454444


Q ss_pred             cCC-CCCeeEEEEEEeCCCc-cee----EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCC
Q psy11132         74 VSA-RHSGNYSCTVRNMVAE-DTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDG  144 (243)
Q Consensus        74 ~~~-~d~G~Y~C~~~~~~~~-~~~----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~  144 (243)
                      ... ...-..+|.+.-.... ...    ...-.|..+|.+..      ....|.-   .|.+. =.|  ...+.|+.++
T Consensus       308 ~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~------~F~~G~A---VCtA~-CVP~egV~l~W~v~D  376 (486)
T PHA03273        308 DPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV------TVEDGDA---VCTAK-CVPSTGVFVSWSVND  376 (486)
T ss_pred             cccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE------EEeCCEE---EEecc-cccCCCeeEEEEccC
Confidence            322 2334789987533332 221    22223333333322      2223433   36653 233  4789999766

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.34  E-value=0.0011  Score=37.05  Aligned_cols=50  Identities=26%  Similarity=0.470  Sum_probs=35.9

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      ..+++.|.|.+     .-.+.|++ |..+....          ...|.+-....+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG-----ATNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC-----CCcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence            35678999965     24699999 55544331          24577777777889999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.19  E-value=0.045  Score=41.87  Aligned_cols=164  Identities=20%  Similarity=0.260  Sum_probs=95.1

Q ss_pred             CcccccCCeEEEEEEeeC-CCC-CceeEEEECCeeecC-----------------CCceEEEE-----eeeeceEEEEee
Q psy11132         18 ERTLNVGERASLICSITK-GDI-PLTIKWLKDGRYLDN-----------------SAALSITH-----VDQYNSMLVIDS   73 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~-~~~-~~~v~W~~~~~~~~~-----------------~~~~~~~~-----~~~~~~~l~i~~   73 (243)
                      +..+..|..+.|.|.++- |.. ...++|+--|-++.+                 ...+.+..     .+-..++|+|.+
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            455777999999998863 333 347899865544321                 11122111     112358999999


Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCC-CcEEEEEEeecC-CCCCEEEEEeCCEecCCCC
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEG-ARTRVICGVTHG-DPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~  151 (243)
                      +..+.+|-|+|.+............|.|.....+.-.       .+| ......|-+.+. ..++.+.|..+|.......
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~-------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~  425 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN-------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI  425 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE-------eccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence            9999999999999876545556666666532211111       133 445567987444 3477899998876544322


Q ss_pred             CeeEE-----eec-cceeEEEEeecCCCC-CeeEEEEEEccCcc
Q psy11132        152 PVNVS-----DLD-SFSSLLSINSVSAAH-SGEYTCVASNTAAQ  188 (243)
Q Consensus       152 ~~~~~-----~~~-~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  188 (243)
                      ...+.     -.+ -..+.+.|.+-...| --.-.|...-..|-
T Consensus       426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY  469 (500)
T ss_pred             cCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence            11111     111 123456666554445 34567777665553

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.17  E-value=0.00039  Score=44.56  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCCcEEEEEEeec----CCCCCEEEEEeCCEecCCCCC------------eeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        118 PEGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFP------------VNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       118 ~~g~~~~l~C~~~~----~~p~~~~~W~~~~~~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      .-++++.|.|.+..    ..+...+.|.+++..+-..+.            ..+.....+...|.+..... -.|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a-~~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA-VEGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH-H-EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc-cccceEEE
Confidence            45899999999842    113457999998876542111            01111222345577766333 28999999


Q ss_pred             EEccCcceeeeEEEEEE
Q psy11132        182 ASNTAAQARYSSKLQVK  198 (243)
Q Consensus       182 ~~n~~g~~~~~~~l~v~  198 (243)
                      +.......+..+.|..+
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99988777777777764

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.11  E-value=0.005  Score=38.67  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             CCcccccCCeEEEEEEeeC-CCCC-ceeEEEECCe-ee--------------cCCCceEEEE-eeeeceEEEEeecCCCC
Q psy11132         17 PERTLNVGERASLICSITK-GDIP-LTIKWLKDGR-YL--------------DNSAALSITH-VDQYNSMLVIDSVSARH   78 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~-~~~~-~~v~W~~~~~-~~--------------~~~~~~~~~~-~~~~~~~l~i~~~~~~d   78 (243)
                      ....+..|+.++|.|.+++ .... ..+.|+|... .+              ....++.... .....-.|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3456778999999999853 2223 5788988421 11              0111221111 22234689999999999


Q ss_pred             CeeEEEEE
Q psy11132         79 SGNYSCTV   86 (243)
Q Consensus        79 ~G~Y~C~~   86 (243)
                      ++.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999966

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02982 hypothetical protein; Provisional

Probab=96.98  E-value=0.013  Score=40.55  Aligned_cols=82  Identities=15%  Similarity=0.223  Sum_probs=54.0

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCE-ecC----------C------C-CCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLS----------P------R-FPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~----------~------~-~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ....++++.|.|...++..-....|+.+.. .+.          .      . ........++..++|+|+++..++.|-
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            345799999999876555566889987432 111          0      0 001122234557899999999999999


Q ss_pred             EEEEEEccCcceee-eEEEEE
Q psy11132        178 YTCVASNTAAQARY-SSKLQV  197 (243)
Q Consensus       178 y~C~~~n~~g~~~~-~~~l~v  197 (243)
                      |+|.+....+..+. .--+.|
T Consensus       115 Ytc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        115 FTCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             eEEEEecCCCchheeheeeeE
Confidence            99999987654332 334444

>PHA03042 CD47-like protein; Provisional

Probab=96.90  E-value=0.01  Score=42.78  Aligned_cols=71  Identities=18%  Similarity=0.284  Sum_probs=46.8

Q ss_pred             CCeEEEEEEeeCC----CCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         24 GERASLICSITKG----DIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        24 g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      ++++.++|.+..-    .....++|..+++.+-.....       ..++|.+. -...-.|+|+|.+.+...+.+..+.|
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEEEEE
Confidence            7899999998531    134579999998876432211       13556554 34455899999999877666666555


Q ss_pred             EEE
Q psy11132        100 IVN  102 (243)
Q Consensus       100 ~v~  102 (243)
                      +-.
T Consensus       103 k~~  105 (286)
T PHA03042        103 QYV  105 (286)
T ss_pred             EEE
Confidence            543

>KOG1480|consensus

Probab=96.63  E-value=0.00099  Score=54.65  Aligned_cols=74  Identities=26%  Similarity=0.463  Sum_probs=58.0

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+....|.++..+.+.|....+.|...++|++++..+.+.......    ....+.+..+...|.|+|+|++.|..+.
T Consensus       135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~----~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA----SDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh----hcCCccccchhhhhcccceeeeehhhcc
Confidence            3444567788899999998778888899999999887773332222    2567899999999999999999987654

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.57  E-value=0.034  Score=35.01  Aligned_cols=67  Identities=13%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--C-CEEEEEeCCEec-C--------------CCCCeeEE-eeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--P-LTIRWLKDGKPL-S--------------PRFPVNVS-DLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~-~~~~W~~~~~~~-~--------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+..|+.++|+|+++ |..  . ..+.|+|..... +              ...+.... .....+-.|.+.+++.+|.
T Consensus         8 ~lv~p~~sv~LsC~~s-g~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           8 VLASSNGAASLVCEYT-YNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             eEEcCCCCEEEEEEec-CCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            3456788999999984 533  2 478898742211 0              01111111 1223346699999999999


Q ss_pred             eeEEEEE
Q psy11132        176 GEYTCVA  182 (243)
Q Consensus       176 g~y~C~~  182 (243)
                      +.|.|..
T Consensus        87 a~Y~Ca~   93 (115)
T cd05721          87 DIYFCKI   93 (115)
T ss_pred             eEEEEEe
Confidence            9999986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03042 CD47-like protein; Provisional

Probab=96.51  E-value=0.024  Score=40.96  Aligned_cols=72  Identities=24%  Similarity=0.320  Sum_probs=48.9

Q ss_pred             CCCCcEEEEEEeecCC-----CCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        118 PEGARTRVICGVTHGD-----PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      .-++++.+.|.+. ..     ....+.|..++..+-..+..       ..++|.+. -...-.|+|+|.|.+...+.+..
T Consensus        29 ~CN~TV~IpC~v~-n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~   99 (286)
T PHA03042         29 TCNKTIVIVCNLN-LLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNT   99 (286)
T ss_pred             ecCceEEEEeecC-ChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEE
Confidence            3578999999984 32     35679999998876543322       12456554 35556899999999876655666


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      ++++-+
T Consensus       100 IeLk~~  105 (286)
T PHA03042        100 IELQYV  105 (286)
T ss_pred             EEEEEE
Confidence            666544

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.38  E-value=0.0096  Score=36.52  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             EEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132        138 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  198 (243)
Q Consensus       138 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~  198 (243)
                      ++|..+..................+..|.|+.++..|+|.|...+++..|.. ...+.+.|.
T Consensus        46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            5666555444332222222233345779999999999999999999999976 344666554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>TIGR00864 PCC polycystin cation channel protein

Probab=96.01  E-value=1.7  Score=42.46  Aligned_cols=193  Identities=11%  Similarity=0.061  Sum_probs=106.2

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE--EEeC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT--VRNM   89 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~   89 (243)
                      +.+......+..|+.++|.-... ......++|..++..-......          .+   .-+....|.|...  +.|.
T Consensus      1700 L~L~aS~~~aavn~~V~fs~~lt-~GS~vty~W~~gdG~s~~~s~p----------~~---tHtf~~~G~y~VtVta~N~ 1765 (2740)
T TIGR00864      1700 LMLQASDNPAAVNALINLSAELA-EGSGLQYRWFLEEGDDLETSEP----------FM---SHSFPSAGLHLVTMKAFNE 1765 (2740)
T ss_pred             eEEeccCCcccCCCeEEEEEEec-CCCCcEEEEEECCCCCcccCCC----------ce---EEEccCCceEEEEEEEEcc
Confidence            33333445567799999998765 4455689999766421110100          00   1124567888664  4577


Q ss_pred             CCcceeEEEEEEEcCCCccccccCC----CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         90 VAEDTQVQRLIVNVPPKIESFAFPF----DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        90 ~~~~~~~~~l~v~~~p~~~~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      .+....+..+.|+++..-.......    ..+..|.++.+.-.+..|. ...+.|..++..-....          ... 
T Consensus      1766 vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk----------~v~- 1833 (2740)
T TIGR00864      1766 LGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGK----------HAC- 1833 (2740)
T ss_pred             ccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccc----------eeE-
Confidence            7776677778887765433222111    1345678888887765454 45888887654311110          111 


Q ss_pred             EEeecCCCCCeeEEE--EEEccCcceeeeEEEEEEeecC---CCCCeeeeeccceeeeccCccccc--ccceEEeC
Q psy11132        166 SINSVSAAHSGEYTC--VASNTAAQARYSSKLQVKGNLN---RLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDN  234 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C--~~~n~~g~~~~~~~l~v~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~  234 (243)
                          ....+.|.|..  .|.|..+....+..+.|.+...   ..+..-...+++.+.+.+....-.  .+.|-+.+
T Consensus      1834 ----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1834 ----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred             ----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence                24456787754  6778888877777777773221   011112334455555555332222  56665543

Note: this model has been restricted to the amino half because for technical reasons.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.00  E-value=0.017  Score=41.65  Aligned_cols=49  Identities=27%  Similarity=0.468  Sum_probs=37.5

Q ss_pred             CCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         38 IPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        38 ~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      ..|.+.|... |+.+....+..+..    .+.|.+.+...+++|.|+|.+....
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence            4568999974 55566665665554    5669999999999999999987544

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.88  E-value=0.024  Score=34.83  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=27.5

Q ss_pred             eceEEEEeecCCCCCeeEEEEEEeCCCcc-eeEEEEEE
Q psy11132         65 YNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIV  101 (243)
Q Consensus        65 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  101 (243)
                      .+.+|.|+.++.+|+|.|.-.+.+..|.. ...+.+.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            36789999999999999999999988874 34444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.81  E-value=0.024  Score=40.91  Aligned_cols=49  Identities=33%  Similarity=0.491  Sum_probs=36.7

Q ss_pred             CCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        134 PPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       134 p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..|.+.|... |..+.......+..    ++.|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence            4689999975 45555444444332    5679999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=95.32  E-value=0.039  Score=43.20  Aligned_cols=82  Identities=20%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEe---CCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLK---DGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~---~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      .+..+++..++|.+ .|.+.+.++|.+   ++..+........ ...-.....|.|-+....|+|.|+|.+.+..|-..+
T Consensus       207 ~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r  285 (560)
T KOG4597|consen  207 FVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR  285 (560)
T ss_pred             hcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence            46678999999999 699999999974   3333221111111 011112356889999999999999999999999988


Q ss_pred             eEEEEEE
Q psy11132        192 SSKLQVK  198 (243)
Q Consensus       192 ~~~l~v~  198 (243)
                      .+.+.+.
T Consensus       286 dv~c~s~  292 (560)
T KOG4597|consen  286 DVPCSSV  292 (560)
T ss_pred             cceeeee
Confidence            8887764

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.19  E-value=0.21  Score=30.07  Aligned_cols=68  Identities=13%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCC----CCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132         16 NPERTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ++...+..|++++..|.+..+-    ....+.|..++..++... +...+  +..+.+++.+......-.|-|..
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q-y~~in--~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ-YRVIN--DTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC-EEEES--TTEEEEEESS--SSEEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH-cceeC--CeEEEEEEccCCCCCceEEEEEE
Confidence            4455688899999999986542    335899999988665543 33222  22366777776666556666664

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.90  E-value=0.085  Score=31.75  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=41.1

Q ss_pred             EEEEEEeecCCCCCEEEEEeC--CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        123 TRVICGVTHGDPPLTIRWLKD--GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       123 ~~l~C~~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      +.-.|.+.+|.|+..++|.-+  |.. .........+.-...+.+.+-.....|.-..+|.+.........++.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            345698779999999999842  321 0000000000001134555656666777799999998754444444443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG4597|consensus

Probab=94.86  E-value=0.067  Score=41.95  Aligned_cols=86  Identities=15%  Similarity=0.056  Sum_probs=59.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEE---CCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLK---DGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +....+..|++..++|-+. |.+.+.|.|.+   ++..+.-.. .............|.|-+....|+|-|+|.+.+..+
T Consensus       203 pa~w~vg~wetcS~tCg~~-G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQ-GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             cchhhcccchhhccccccc-CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            4455678899999999984 88989999976   332221111 110011112357899999999999999999999988


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                      ...+.+.+.+.
T Consensus       282 ~~~rdv~c~s~  292 (560)
T KOG4597|consen  282 FLRRDVPCSSV  292 (560)
T ss_pred             eeeccceeeee
Confidence            77766666654

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.53  E-value=0.19  Score=38.09  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEEC
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKD   47 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~   47 (243)
                      ..||.+.+....   ..+ .++|+|.+.+..|. ..++|.|+
T Consensus       201 ~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        201 PVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            356666654321   122 57999999865664 58999999

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.39  E-value=0.23  Score=37.70  Aligned_cols=22  Identities=18%  Similarity=0.596  Sum_probs=18.7

Q ss_pred             cEEEEEEeecCCC-CCEEEEEeC
Q psy11132        122 RTRVICGVTHGDP-PLTIRWLKD  143 (243)
Q Consensus       122 ~~~l~C~~~~~~p-~~~~~W~~~  143 (243)
                      .+.|.|.+.+.+| ...+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999987777 668999999

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.24  E-value=0.44  Score=28.03  Aligned_cols=52  Identities=19%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE-EccCcceeeeEEEEE
Q psy11132        135 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA-SNTAAQARYSSKLQV  197 (243)
Q Consensus       135 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~g~~~~~~~l~v  197 (243)
                      .+.+.|+..+......           ............|+|.+.|.| .+..........+.+
T Consensus        26 ~~~~~l~~~~~k~~~~-----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLET-----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEE-----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCcccccc-----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4566676555443221           234455667789999999999 454444444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.02  E-value=0.66  Score=27.30  Aligned_cols=51  Identities=16%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE-eCCCcceeEEEEEE
Q psy11132         40 LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR-NMVAEDTQVQRLIV  101 (243)
Q Consensus        40 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v  101 (243)
                      +.+.|+-.+......           ...+.....+.+|+|.+.|.|. +..........+.+
T Consensus        27 ~~~~l~~~~~k~~~~-----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   27 PSLFLENPGKKSLET-----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEECSSCEEEEE-----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             hhheeeccCcccccc-----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            466666555433221           3345566778899999999995 33333333444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>TIGR00864 PCC polycystin cation channel protein

Probab=93.99  E-value=7  Score=38.69  Aligned_cols=158  Identities=11%  Similarity=0.096  Sum_probs=89.5

Q ss_pred             cccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE--EEeCCCcceeEEE
Q psy11132         21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT--VRNMVAEDTQVQR   98 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~   98 (243)
                      +..|+..+|...+..+.+. .+.|+.+-..+.....+.....   .  .+   .+....|.|...  |.|..+..+....
T Consensus      1965 ~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g~~~~~~~G~---~--vt---y~~~~~G~~~I~v~A~N~l~s~n~t~~ 2035 (2740)
T TIGR00864      1965 IATGEEKNFTANVQRGKPV-AFAWTFDLHHLHGDSLVIHMGK---D--VS---YTAEAAGLLEIQLGAFNALGAENITLQ 2035 (2740)
T ss_pred             eecCceEEEEEEEecCCce-EEEEEeeecccCCCcceeecCC---c--eE---EccCCCcEEEEEEEEEcccCcccccEE
Confidence            6779999999998655554 7999866443333222111110   1  11   123468888765  4566676666667


Q ss_pred             EEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCC-EecCCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132         99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus        99 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      +.|+.+...............+..+++.|....+.....+.|-.++ ............      .       .....|.
T Consensus      2036 i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~s------H-------tY~r~G~ 2102 (2740)
T TIGR00864      2036 LEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAE------H-------EYLHPGD 2102 (2740)
T ss_pred             EEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeE------E-------EecCCcc
Confidence            7777654333222112345568899999998533335789997754 433322111111      1       1123477


Q ss_pred             EEEE--EEccCcceeeeEEEEEEee
Q psy11132        178 YTCV--ASNTAAQARYSSKLQVKGN  200 (243)
Q Consensus       178 y~C~--~~n~~g~~~~~~~l~v~~~  200 (243)
                      |.-.  |.|.........++.|...
T Consensus      2103 Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864      2103 YRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred             EEEEEEEEcceeeeeeEEEEEEEEe
Confidence            7554  5577666666677776643

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0613|consensus

Probab=93.53  E-value=0.5  Score=42.03  Aligned_cols=131  Identities=8%  Similarity=-0.042  Sum_probs=76.1

Q ss_pred             eEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcC----------------CCccccccC--CCCCCCCCcEEEEEE
Q psy11132         67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP----------------PKIESFAFP--FDGLPEGARTRVICG  128 (243)
Q Consensus        67 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~----------------p~~~~~~~~--~~~~~~g~~~~l~C~  128 (243)
                      ....+.+-...+.+.|+|...+..+.....+.-.+...                +........  ......+..+.+.|.
T Consensus       278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~  357 (1205)
T KOG0613|consen  278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA  357 (1205)
T ss_pred             ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence            34555556666677777777666555433333222211                101110000  022345667788888


Q ss_pred             eecCCCCCE-EEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        129 VTHGDPPLT-IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       129 ~~~~~p~~~-~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      . .+.+.+. +.|++++........... .........+.+..+...+.+.|.|.|.|..|.........+.
T Consensus       358 ~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs  428 (1205)
T KOG0613|consen  358 L-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS  428 (1205)
T ss_pred             c-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence            7 4666554 999998776554332111 1122234567888899999999999999999977655444444

>PHA03283 envelope glycoprotein E; Provisional

Probab=92.19  E-value=5.4  Score=32.38  Aligned_cols=77  Identities=21%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccc---------cccCC-----------CCCCCCCcEEE
Q psy11132         66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES---------FAFPF-----------DGLPEGARTRV  125 (243)
Q Consensus        66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~---------~~~~~-----------~~~~~g~~~~l  125 (243)
                      ...|.|.+++.+++|.|+-..++..+.....+.|.|..++....         .+...           .....|+++.+
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l  212 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL  212 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence            57899999999999999999997666445556677765222110         00000           11347998888


Q ss_pred             EEEeecCC--C--CCEEEEEe
Q psy11132        126 ICGVTHGD--P--PLTIRWLK  142 (243)
Q Consensus       126 ~C~~~~~~--p--~~~~~W~~  142 (243)
                      .-......  +  ..++.|+.
T Consensus       213 si~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        213 SVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eEEEeeccCCCCceEEEEEEE
Confidence            66553222  2  34789986

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=91.86  E-value=3.4  Score=29.34  Aligned_cols=134  Identities=19%  Similarity=0.353  Sum_probs=61.9

Q ss_pred             ceeEEEECCeeecCCCceEEEE---ee--eeceEEEEe-ecCCCCCeeEEEEEEeCCCc-ceeEE----EEEEEcCCCcc
Q psy11132         40 LTIKWLKDGRYLDNSAALSITH---VD--QYNSMLVID-SVSARHSGNYSCTVRNMVAE-DTQVQ----RLIVNVPPKIE  108 (243)
Q Consensus        40 ~~v~W~~~~~~~~~~~~~~~~~---~~--~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~~-~~~~~----~l~v~~~p~~~  108 (243)
                      ..+.|+.||.++....-.....   .+  ...+.|++. +......-..+|.+.-.... .+..+    .-.|..+|.+.
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs   86 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS   86 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence            4789999999876432111111   11  113455552 22333345889987643332 22222    22233333332


Q ss_pred             ccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCCeeEEeec-cceeEEEEee---cCCCCCe--eEEE
Q psy11132        109 SFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINS---VSAAHSG--EYTC  180 (243)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~---~~~~d~g--~y~C  180 (243)
                      .      ....|.   ..|.+. =-|  ...+.|.-++............+.- ..-....|..   ++.. .|  +|+|
T Consensus        87 v------~F~~g~---AVC~A~-CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~-~~~~~YtC  155 (211)
T PF02124_consen   87 V------RFEDGY---AVCTAR-CVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDE-DGPVEYTC  155 (211)
T ss_pred             E------EecCCE---EEEEcc-eeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCcc-CCceeEEE
Confidence            2      122333   346653 222  3799999877654222222211111 1112233333   3333 34  9999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus       156 ~l~G  159 (211)
T PF02124_consen  156 RLIG  159 (211)
T ss_pred             EEee
Confidence            9874

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=91.45  E-value=0.87  Score=27.57  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             EEEEEEeeCCCCCceeEEEEC--Cee-ecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132         27 ASLICSITKGDIPLTIKWLKD--GRY-LDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL   99 (243)
Q Consensus        27 ~~l~C~~~~~~~~~~v~W~~~--~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   99 (243)
                      +.-.|.+.+|.|+..|+|.-+  |.. .......  ...-...+.+.+-.....|.-..+|++..........+.|
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~--~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQ--NGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCC--CCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            456798778999999999842  321 0000000  0000112334444555666668999998754433334444

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03052 Hypothetical protein; Provisional

Probab=90.47  E-value=1.1  Score=25.15  Aligned_cols=36  Identities=14%  Similarity=0.461  Sum_probs=28.1

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEECCeeec
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKDGRYLD   52 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~   52 (243)
                      ....+..|+.++|.|.+.-+.+  ...+.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            4566888999999999975444  45788998888773

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.27  E-value=1.1  Score=26.97  Aligned_cols=65  Identities=11%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             CCCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      ..+..|..++..|....+    .....+.|..++..++........   ...+..++.+......-.|-|..
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN---DTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES---TTEEEEEESS--SSEEEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC---CeEEEEEEccCCCCCceEEEEEE
Confidence            446789999999988643    246689999998876655332222   22366667665555555666664

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG0613|consensus

Probab=89.57  E-value=0.91  Score=40.54  Aligned_cols=166  Identities=13%  Similarity=0.010  Sum_probs=94.2

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         17 PERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      ..+....+..+++.|... +.+.+ .+.|++++........-... ........+.|..+...+.+.|.|.+.|..+...
T Consensus       342 ~~v~a~d~~~v~m~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~  420 (1205)
T KOG0613|consen  342 LSVTARDNTLVEMPTALS-GTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ  420 (1205)
T ss_pred             ceeccccCcceeeccccc-CCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence            345667788899999985 65555 59999987665443311111 1122356788899999999999999999888644


Q ss_pred             eEEEEEEEcCCCccccc-----cC-CCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132         95 QVQRLIVNVPPKIESFA-----FP-FDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS  166 (243)
Q Consensus        95 ~~~~l~v~~~p~~~~~~-----~~-~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (243)
                      ......+..........     .. ......-+.+.+.|.. .+.+  -..++|++++.........  .. ......|.
T Consensus       421 ~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~~~s~~s~~--l~-r~~~tslL  496 (1205)
T KOG0613|consen  421 TIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGLPLSDRSVT--LT-RDVLTSLL  496 (1205)
T ss_pred             ccchhhcccccCCCCCccccccccccccccCCcccccccCC-CCccccceeEeeccCCccccccccc--cc-ccchhhhe
Confidence            33333333322111110     00 0112233777888887 4666  3455666665544322111  11 11124455


Q ss_pred             EeecCCCCCeeEEEEEEccCc
Q psy11132        167 INSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +.-....+.+.|.-......+
T Consensus       497 lk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  497 LKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             eeccCCCccchhhhhhhccCC
Confidence            666677777887555444433

>PHA03112 IL-18 binding protein; Provisional

Probab=89.00  E-value=2.4  Score=27.83  Aligned_cols=30  Identities=17%  Similarity=0.104  Sum_probs=22.3

Q ss_pred             cccccCCeEEEEEEeeCCCCC-ceeEEEECC
Q psy11132         19 RTLNVGERASLICSITKGDIP-LTIKWLKDG   48 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~   48 (243)
                      +...+|+.+.|+|.+....|. .-+.|..++
T Consensus        33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn   63 (141)
T PHA03112         33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN   63 (141)
T ss_pred             cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence            345779999999998644454 478899765

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=88.93  E-value=3.6  Score=24.90  Aligned_cols=82  Identities=16%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .+.|+...+..|+++.+.|..+ -..+-.+-|.-.-  ..+..+..         =..+.+.+++. | ..-.|.+.=..
T Consensus         7 ~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~g~~---------W~~f~LsnV~~-d-s~~~C~~~C~g   74 (91)
T PF03921_consen    7 RVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDSGPQ---------WKAFQLSNVTE-D-SSPLCFFNCSG   74 (91)
T ss_dssp             EEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEEETT---------EEEEEEEEE-S-C-EEEEEEEEETT
T ss_pred             EEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCCCCc---------EEEEEEEcccc-C-CeEEEEEEcCC
Confidence            3446677899999999999974 2222244443211  11111111         24566778876 4 56789887654


Q ss_pred             CcceeEEEEEEEcCCC
Q psy11132         91 AEDTQVQRLIVNVPPK  106 (243)
Q Consensus        91 ~~~~~~~~l~v~~~p~  106 (243)
                      .....++.+.|..+|.
T Consensus        75 ~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   75 EQSSASANITVYKPPE   90 (91)
T ss_dssp             EEEEEEEEEEEEB--S
T ss_pred             eEEEeEEeeEEeCCCC
Confidence            4456778888887764

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=88.34  E-value=7.3  Score=27.74  Aligned_cols=95  Identities=18%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             CCEEEEEeCCEecCCCCCeeEEe--ecc---ceeEEEEeec-CCCCCeeEEEEEEccCcce-eeeE----EEEEEeecCC
Q psy11132        135 PLTIRWLKDGKPLSPRFPVNVSD--LDS---FSSLLSINSV-SAAHSGEYTCVASNTAAQA-RYSS----KLQVKGNLNR  203 (243)
Q Consensus       135 ~~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~-~~~~----~l~v~~~~~~  203 (243)
                      ...+.||.||..+..........  .++   ..++|.+... ..+..-+.+|.+.-..... ...+    .-.|.     
T Consensus         6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy-----   80 (211)
T PF02124_consen    6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVY-----   80 (211)
T ss_pred             cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccccccee-----
Confidence            34789999999887543322222  112   1244555322 2233458999988654422 2222    22333     


Q ss_pred             CCCeeeeecc-ceeeeccCccccc----ccceEEeCCe
Q psy11132        204 LPPSYTLVFS-QASYMSTSYYSFE----QDSWMIDNEN  236 (243)
Q Consensus       204 ~~p~~~~~~~-~~~~~~~~~~~~~----~~~W~~~~~~  236 (243)
                      .+|.+++.-. ..+  .|+....+    .++|+-+++.
T Consensus        81 ~~P~vsv~F~~g~A--VC~A~CVP~~~v~l~W~v~d~~  116 (211)
T PF02124_consen   81 PKPRVSVRFEDGYA--VCTARCVPRGNVTLRWSVGDDP  116 (211)
T ss_pred             cCCEEEEEecCCEE--EEEcceeeCCCeEEEEEECCcc
Confidence            6777776543 333  34444433    7899987753

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03240 envelope glycoprotein M; Provisional

Probab=88.15  E-value=1.3  Score=31.05  Aligned_cols=68  Identities=22%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEEC--------Ce---ee---cC--CCc---------eEEEEeeeeceEEEEe
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKD--------GR---YL---DN--SAA---------LSITHVDQYNSMLVID   72 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--------~~---~~---~~--~~~---------~~~~~~~~~~~~l~i~   72 (243)
                      ++.+.+|++|+|.-.- ...+...+.|++.        |.   ++   .+  .++         .....-...+++|.|.
T Consensus        32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~  110 (258)
T PHA03240         32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA  110 (258)
T ss_pred             ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence            4568899999997653 2245568999981        11   11   00  011         0011112246789999


Q ss_pred             ecCCCCCeeEEEEE
Q psy11132         73 SVSARHSGNYSCTV   86 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~   86 (243)
                      ++..+|.|+|.-..
T Consensus       111 ~vn~sd~~nYcr~k  124 (258)
T PHA03240        111 HLNLSDAGEYCRKK  124 (258)
T ss_pred             EEeecCcchhhhcc
Confidence            99999999985443

>KOG1026|consensus

Probab=87.71  E-value=1.7  Score=37.17  Aligned_cols=163  Identities=20%  Similarity=0.240  Sum_probs=88.8

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      ...+..|..+++.|... +.+.+...|+.++....+.......-     ........      ++.|.+.+..+.....+
T Consensus       201 ~~~v~~~~~~~~~c~~~-~~~vp~~~~~~~~~~~~~~~~~~~~c-----~~~~~~~~------~~~c~~E~~~~~~~~~v  268 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQA-GIPVPCHYWFPNCLASSNTNQTSSLC-----RSECEVLE------NDLCIAENAVARSNPSI  268 (774)
T ss_pred             hhhhcccchheeeeecc-cCCCcceeeecccccccCCCcccccc-----cccceeee------chhhHHHHhhhhcCcee
Confidence            45577899999999984 88888999998776554422211000     00111111      18898888877766666


Q ss_pred             EEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132         98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus        98 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      .+.+..++........   ... ....+.-.+ .+.|.+...|..++..+............. ...+........+.|.
T Consensus       269 ~~~~~~p~~~~~~~~~---~~~-~~~C~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~-~~C~~~~~~~h~~~~~  342 (774)
T KOG1026|consen  269 LLVVDLPKAEVLLCSP---LSD-HHNCIPIGI-TANPGPALHWCYNGSGLNYRGTVCVTKSGK-EQCLPWNDPPHSHNGN  342 (774)
T ss_pred             eeEEecccccccCCCC---ccc-cCceeeeec-cCCCCCceeeeecCccceEecccccccccC-cCCcccCcCcccccCc
Confidence            6665544322211111   011 111111122 256777888888776654322211111110 0233344446677899


Q ss_pred             EEEEEEccCcceeeeEEEEEE
Q psy11132        178 YTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       178 y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |+|.+.+..|.........+.
T Consensus       343 ~~~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  343 YTLFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             ceeeecccCccccccCcCccc
Confidence            999999998866555444443

>PHA03286 envelope glycoprotein E; Provisional

Probab=84.29  E-value=6.4  Score=31.32  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeee-EEEEEEee
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVKGN  200 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~l~v~~~  200 (243)
                      .+.|.|.+++.+++|.|+-...|..|....+ +.+.|.++
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~  165 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH  165 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence            3669999999999999999999987776544 56667644

>KOG1026|consensus

Probab=83.11  E-value=0.94  Score=38.58  Aligned_cols=168  Identities=20%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      +.+...++...+.|.+. ..+...+.|.++........+............+...+....+.|.+.|...+.........
T Consensus        61 n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  139 (774)
T KOG1026|consen   61 NITEIFIENGQLLCIVS-GNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTE  139 (774)
T ss_pred             hHHHHHHhhhhhccccc-CCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccch
Confidence            34455577778888885 44444888988766554332222111111233466667777777777776654332211110


Q ss_pred             EEEEEcC--------------------CCc--------c-----------------ccccCCCCCCCCCcEEEEEEeecC
Q psy11132         98 RLIVNVP--------------------PKI--------E-----------------SFAFPFDGLPEGARTRVICGVTHG  132 (243)
Q Consensus        98 ~l~v~~~--------------------p~~--------~-----------------~~~~~~~~~~~g~~~~l~C~~~~~  132 (243)
                      ...+..+                    +..        .                 ........+..|..+++.|.. .+
T Consensus       140 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~-~~  218 (774)
T KOG1026|consen  140 LSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQ-AG  218 (774)
T ss_pred             hhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeec-cc
Confidence            0000000                    000        0                 000001235678899999999 59


Q ss_pred             CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       133 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .|.+...|+..+..............   .-...+.        .+.|.+.|..|....++.+.+.
T Consensus       219 ~~vp~~~~~~~~~~~~~~~~~~~~c~---~~~~~~~--------~~~c~~E~~~~~~~~~v~~~~~  273 (774)
T KOG1026|consen  219 IPVPCHYWFPNCLASSNTNQTSSLCR---SECEVLE--------NDLCIAENAVARSNPSILLVVD  273 (774)
T ss_pred             CCCcceeeecccccccCCCccccccc---ccceeee--------chhhHHHHhhhhcCceeeeEEe
Confidence            99999999987776654322111111   0111111        1789999999988877777766

>PHA03189 UL14 tegument protein; Provisional

Probab=82.46  E-value=19  Score=27.22  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CCCcccccCCeEEEEEEeeCC-CCCce--eEEEE-------------CCeeecC-------CCceEEEEeee-eceEEEE
Q psy11132         16 NPERTLNVGERASLICSITKG-DIPLT--IKWLK-------------DGRYLDN-------SAALSITHVDQ-YNSMLVI   71 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~-~~~~~--v~W~~-------------~~~~~~~-------~~~~~~~~~~~-~~~~l~i   71 (243)
                      +....+..|+.+++.|.+... .|...  +.+..             .|..+..       ....++..... ..-+|++
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF  138 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF  138 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence            345667899999999998532 23222  22221             1222211       11222222211 1223444


Q ss_pred             eecCCCCCeeEEEEEEeCCCc
Q psy11132         72 DSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                       ++..+.+|.|.|+..|....
T Consensus       139 -~v~t~taG~Y~CvLrN~tHg  158 (348)
T PHA03189        139 -RVSTSTAGMYECVLRNETHG  158 (348)
T ss_pred             -EEEecccceEEEEeccccce
Confidence             46677899999999987654

>PHA03286 envelope glycoprotein E; Provisional

Probab=82.14  E-value=25  Score=28.29  Aligned_cols=77  Identities=17%  Similarity=0.009  Sum_probs=47.1

Q ss_pred             ceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcC----CC-cc--ccccC-----------CCCCCCCCcEEEE
Q psy11132         66 NSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVP----PK-IE--SFAFP-----------FDGLPEGARTRVI  126 (243)
Q Consensus        66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~----p~-~~--~~~~~-----------~~~~~~g~~~~l~  126 (243)
                      ...|.|.+.+.+.+|.|+-..++..+. ....+.|.|...    +. ..  ..+..           .....+|+++.+.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            467999999999999999999987655 344556666421    11 11  11110           0113479998776


Q ss_pred             EEeecC----CCCCEEEEEe
Q psy11132        127 CGVTHG----DPPLTIRWLK  142 (243)
Q Consensus       127 C~~~~~----~p~~~~~W~~  142 (243)
                      -.....    .-...+.|+.
T Consensus       206 v~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        206 VTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEeecccCCCceEEEEEEE
Confidence            554311    1245789975

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=80.75  E-value=9.7  Score=22.77  Aligned_cols=54  Identities=20%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      ...|.+.+.++.+  .+.|+.||..+.....         ...+.+   .....|.|+..+.+..|..
T Consensus        31 ~~~l~l~a~~~~~--~~~W~vdg~~~g~~~~---------~~~~~~---~~~~~G~h~l~vvD~~G~~   84 (89)
T PF06832_consen   31 RQPLVLKAAGGRG--PVYWFVDGEPLGTTQP---------GHQLFW---QPDRPGEHTLTVVDAQGRS   84 (89)
T ss_pred             cceEEEEEeCCCC--cEEEEECCEEcccCCC---------CCeEEe---CCCCCeeEEEEEEcCCCCE
Confidence            3444444433423  8999999998843322         222222   2356789988887776654

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03052 Hypothetical protein; Provisional

Probab=80.52  E-value=4.4  Score=22.76  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSP  149 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~  149 (243)
                      ..+..|..++|.|.+.-|.+  .+.+.|..|+..+..
T Consensus         7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            34567999999999975544  557899998887743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-08
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-10
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-10
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-10
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		1e-07
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-06
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		5e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-06
2npl_X	96	Nmr Structure Of Card D2 Domain Length = 96		2e-05
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		3e-05
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		8e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		5e-05
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		5e-05
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-05
3jz7_A	214	Crystal Structure Of The Extracellular Domains Of C		6e-05
3mj7_B	225	Crystal Structure Of The Complex Of Jaml And Coxsac		6e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		9e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		9e-05
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		1e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		1e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		3e-04
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		3e-04
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		5e-04
2e6p_A	104	Solution Structure Of The Ig-Like Domain (714-804)		9e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 8   VPPKLSP-TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           V P++ P    E    VG+  +L CS+  GD+PL I W  DG+ +     ++ + V +  
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
           S+L I++V A H+GN++C  RN+         L V VPP+      P D    +G+  +V
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW--ILEPTDKAFAQGSDAKV 734
Query: 126 ICGVTHGDPPLTIRWLK 142
            C    G P   + W K
Sbjct: 735 ECK-ADGFPKPQVTWKK 750

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 18  ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY--NSMLVIDSVS 75
           ++ +  GE   + C +    I  +I W +D R      AL I    +   N  L+I++V 
Sbjct: 535 KKAIVAGETLIVTCPVAGYPID-SIVWERDNR------ALPINRKQKVFPNGTLIIENVE 587
Query: 76  ARHS--GNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG 132
            R+S    Y+C  +N      +    + V V P+I  FAF       G    + C V  G
Sbjct: 588 -RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG 646
Query: 133 DPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYS 192
           D PL I W  DG+ +S                       A+H+G +TC A N A   +++
Sbjct: 647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706
Query: 193 SKLQVKGNLNRLPPSYTL-----VFSQAS 216
           + L V      +PP + L      F+Q S
Sbjct: 707 TPLNV-----YVPPRWILEPTDKAFAQGS 730

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 21  LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG 80
           L +GE  +  C +T G  P+ I W KD R +       +T V+   ++ V+  V+   +G
Sbjct: 17  LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL-KVTKGDAG 74
Query: 81  NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
            Y+C   N+  +D+   +L V  PP+      P   + +   TR  C +  G P + + W
Sbjct: 75  QYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLW 133
Query: 141 LKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
            KD   +  S +F                       SG+YTC A N A  A  S+ L+VK
Sbjct: 134 YKDETEIQESSKF---RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 11/213 (5%)
Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
           +++    +PP  +    +    +G   +  C I  G  PL + W KDG  L + A L  +
Sbjct: 93  LVIKERKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTS 151
Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGL 117
            +    ++ ++ +    H G Y+C+  N +   +   +L ++   VPP  +      D L
Sbjct: 152 FIHNVATLQILQT-DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD-L 209
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGE 177
             G      C VT G  P+ I W KD + + P                         +G+
Sbjct: 210 ALGESGTFKCHVT-GTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 178 YTCVASNTAAQARYSSKLQVKGN---LNRLPPS 207
           YTC ASN A +   S++L V+     + +L PS
Sbjct: 268 YTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPS 300

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 21  LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG 80
           L +GE  +  C +T G  P+ I W KD R +       +T V+   ++ V+  V+   +G
Sbjct: 17  LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL-KVTKGDAG 74
Query: 81  NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
            Y+C   N+  +D+   +L V  PP+      P   + +   TR  C +  G P + + W
Sbjct: 75  QYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLW 133
Query: 141 LKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
            KD   +  S +F                       SG+YTC A N A  A  S+ L+VK
Sbjct: 134 YKDETEIQESSKF---RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           VGER  +      G  P  IKW K+G  L+++  +   HV      L I  VS R +GNY
Sbjct: 214 VGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAGHV------LTIMEVSERDTGNY 266
Query: 83  SCTVRNMVAEDTQ--VQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
           +  + N ++++ Q  V  L+V VPP+I  +S   P D    G    + C V    PP  I
Sbjct: 267 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 326
Query: 139 RW 140
            W
Sbjct: 327 HW 328

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 10/198 (5%)
Query: 4   IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           IF  +  K +PT  E     GE A ++C +    +P TI W   GR  D      +  + 
Sbjct: 97  IFQKLMFKNAPTPQE--FKEGEDAVIVCDVVSS-LPPTIIWKHKGR--DVILKKDVRFIV 151
Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDGLPE-G 120
             N+ L I  +     G Y C  R +   +   +  ++IVNVPP +++     +     G
Sbjct: 152 LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG 211
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAH-SGEYT 179
               ++C    G P  T+ W KDG+P+                          +   EY 
Sbjct: 212 QSVTLVCD-ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270
Query: 180 CVASNTAAQARYSSKLQV 197
           C+A N A +   S  L+V
Sbjct: 271 CIAENKAGEQDASIHLKV 288

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           VGER  +      G  P  IKW K+G  L+++  +   HV      L I  VS R +GNY
Sbjct: 344 VGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAGHV------LTIMEVSERDTGNY 396
Query: 83  SCTVRNMVAEDTQ--VQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
           +  + N ++++ Q  V  L+V VPP+I  +S   P D    G    + C V    PP  I
Sbjct: 397 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456
Query: 139 RW 140
            W
Sbjct: 457 HW 458

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           VG++ +L C      +P  IKW    R +D S +   T  +     L I SVS    G Y
Sbjct: 220 VGQQVTLECFAFGNPVP-RIKW----RKVDGSLSPQWTTAE---PTLQIPSVSFEDEGTY 271
Query: 83  SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE-GARTRVICGVTHGDPPLTIRWL 141
            C   N    DT   R+IV   P  E      D   + G+  R  C    G P  T+RWL
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQP--EWLKVISDTEADIGSNLRWGCAAA-GKPRPTVRWL 328
Query: 142 KDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
           ++G+PL+ +                        SG Y CVA N       S++L V+
Sbjct: 329 RNGEPLASQ-----NRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 9/176 (5%)
Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNY 82
           G  AS +C  T G+    I W+K G+ + +     I   D   S+L I  +   R    Y
Sbjct: 21  GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 83  SCTVRNMVAEDTQVQRLIV----NVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLT 137
            CT  N + E     +L V     +PP   S    P   + E ART  +     G+P   
Sbjct: 80  ECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPE 139
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
           I W KD  P+ P                       +  G+Y CVA+N+A   RYS+
Sbjct: 140 ISWFKDFLPVDPAT-SNGRIKQLRSGALQIESSEESDQGKYECVATNSAG-TRYSA 193

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 14/202 (6%)
Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP+ + T  ++T   G  AS IC  T GD    I W K G+ + N     I   D   S+
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 69  LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
           L I  + + R    Y C   N V E +   RL V    +I    FP  D  P     E  
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR-GFPTIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYT 179
           RT  +     G+P   I W KD  P+  S                        +  G+Y 
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 180 CVASNTAAQARYS--SKLQVKG 199
           CVA+N+A   RYS  + L V+G
Sbjct: 184 CVATNSAG-TRYSAPANLYVRG 204

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 11/210 (5%)
Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP+      ++    G  AS +C  T GD    + W K G+ +++    +I   +   ++
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69  LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
           L I  + + R    Y C  +N V E T   +L V    ++ S  FP  D  P     E  
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
           RT  +     G+P   I W KD  P+ P                          G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
           A+N+A   RYSS   +   +  + P ++++
Sbjct: 183 ATNSAG-VRYSSPANLYVRVQNVAPRFSIL 211

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 25/182 (13%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
            G+  +L C      +P  IKW    R LD S        +    +L I +V     G Y
Sbjct: 221 TGQMVTLECFAFGNPVP-QIKW----RKLDGSQTSKWLSSE---PLLHIQNVDFEDEGTY 272
Query: 83  SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE-----GARTRVICGVTHGDPPLT 137
            C   N+   DT   R+I++  P         D + +     G+  R  C V  G P   
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDW------LDVITDTEADIGSDLRWSC-VASGKPRPA 325
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
           +RWL+DG+PL+ +                        SG Y CVA N       S++L V
Sbjct: 326 VRWLRDGQPLASQ-----NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Query: 198 KG 199
           + 
Sbjct: 381 QA 382

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP+      ++    G  AS +C  T GD    + W K G+ +++    +I   +   ++
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69  LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
           L I  + + R    Y C  +N V E T   +L V    ++ S  FP  D  P     E  
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
           RT  +     G+P   I W KD  P+ P                          G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSS 193
           A+N+A   RYSS
Sbjct: 183 ATNSAG-VRYSS 193

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP+      ++    G  AS +C  T GD    + W K G+ +++    +I   +   ++
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69  LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
           L I  + + R    Y C  +N V E T   +L V    ++ S  FP  D  P     E  
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
           RT  +     G+P   I W KD  P+ P                          G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSS 193
           A+N+A   RYSS
Sbjct: 183 ATNSAG-VRYSS 193

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 11/177 (6%)
Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNY 82
           G  AS +C  T G+    I W+K G+ + +     I   D   S+L I  +   R    Y
Sbjct: 22  GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 83  SCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGARTRVICGVTHGDPPL 136
            CT  N + E     +L V    ++ S  FP  D  P     E  RT  +     G+P  
Sbjct: 81  ECTATNSLGEINTSAKLSVLEEDQLPS-GFPTIDMGPQLKVVEKGRTATMLCAAGGNPDP 139
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
            I W KD  P+ P                       +  G+Y CVA+N+A   RYS+
Sbjct: 140 EISWFKDFLPVDP-AASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG-TRYSA 194

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 9/176 (5%)
Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-SARHSGNY 82
           G  AS +C  T GD    + W K G+ +++    +I   +   ++L I  + + R    Y
Sbjct: 21  GGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 83  SCTVRNMVAEDTQVQRLIV----NVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLT 137
            C  +N   E T   +L V     +PP   +    P   + E  RT  +     G+P   
Sbjct: 80  ECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
           I W KD  P+ P                          G+Y CVASN+A   RYSS
Sbjct: 140 ITWFKDFLPVDPST-SNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG-VRYSS 193

>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain Length = 96

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSGN 81
           +G    + C   +G +PL  +W K    L +S  +  + + +  S ++ + + S+ +SG 
Sbjct: 15  IGSDFKIKCEPKEGSLPLQYEWQK----LSDSQKMPTSWLAEMTSSVISVKNASSEYSGT 70
Query: 82  YSCTVRNMVAEDTQVQRLIVNVPP 105
           YSCTVRN V  D  + RL V VPP
Sbjct: 71  YSCTVRNRVGSDQCLLRLNV-VPP 93

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG----------RYLDNSAAL 57
           VPP     N   +  +G RA L CS   G  P    W KDG          R   NS+ +
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 58  SITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
               ++     LV D +SA  +G YSC  RN
Sbjct: 166 ----LNPTTGELVFDPLSASDTGEYSCEARN 192

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDT-----QVQ-RLIVNVPPKIESFAFPFDGLPEGAR 122
           +   SV+   +G Y+C    MV+E+      +V+ +LIV VPP   +   P      G R
Sbjct: 70  ITFKSVTREDTGTYTC----MVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT-IGNR 124
Query: 123 TRVICGVTHGDPPLTIRWLKDG--KPLSPR----FPXXXXXXXXXXXXXXXXXXXAAHSG 176
             + C    G PP    W KDG   P +P+    F                    A+ +G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 177 EYTCVASN 184
           EY+C A N
Sbjct: 185 EYSCEARN 192

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41  TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
           T++WLK+G+       +    V      +++DSV     GNY+C V N         +L 
Sbjct: 47  TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 106
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
           +V   P   I     P +  +  G+    +C V + DP   I+WLK    +G  + P   
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 165
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
                                H        +GEYTC+A N+   + +S+ L V
Sbjct: 166 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41  TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
           T++WLK+G+       +    V      +++DSV     GNY+C V N         +L 
Sbjct: 47  TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 106
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
           +V   P   I     P +  +  G+    +C V + DP   I+WLK    +G  + P   
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 165
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
                                H        +GEYTC+A N+   + +S+ L V
Sbjct: 166 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41  TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
           T++WLK+G+       +    V      +++DSV     GNY+C V N         +L 
Sbjct: 48  TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 107
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
           +V   P   I     P +  +  G+    +C V + DP   I+WLK    +G  + P   
Sbjct: 108 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 166
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
                                H        +GEYTC+A N+   + +S+ L V
Sbjct: 167 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219

>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of Coxsackie & Adenovirus Receptor From Mouse (Mcar) Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 22  NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSG 80
            +G    L C   +G +PL  +W K    L +S  +    + +  S ++ + + S+ +SG
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSG 189
Query: 81  NYSCTVRNMVAEDTQVQRLIVNVPP 105
            YSCTV+N V  D  + RL V VPP
Sbjct: 190 TYSCTVQNRVGSDQCMLRLDV-VPP 213

>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And Adenovirus Receptor, Car Length = 225

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSGN 81
           +G    L C   +G +PL  +W K    L +S  +    + +  S ++ + + S+ +SG 
Sbjct: 137 IGNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSGT 192
Query: 82  YSCTVRNMVAEDTQVQRLIVNVPP 105
           YSCTV+N V  D  + RL V VPP
Sbjct: 193 YSCTVQNRVGSDQCMLRLDV-VPP 215

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALS------ITHVDQYNSMLVIDSVSAR 77
           GE A L C   KG    T+ W+KDG  LD+  A+S      +  VD  N  L+I +V   
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPI 180
Query: 78  HSGNYSCTVRNMVA-EDTQVQRLIVNV 103
             GNY C  +N+V   ++   +LIV V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALS------ITHVDQYNSMLVIDSVSAR 77
           GE A L C   KG    T+ W+KDG  LD+  A+S      +  VD  N  L+I +V   
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPI 180
Query: 78  HSGNYSCTVRNMVA-EDTQVQRLIVNV 103
             GNY C  +N+V   ++   +LIV V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 30/217 (13%)
Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           PP++      + + VG  AS  C+  +GD P +I W K+G+ +  + +   T ++Q    
Sbjct: 8   PPEIIRKPQNQGVRVGGVASFYCA-ARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGI 65
Query: 67  SMLVIDSVSA-RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
           S+L I+ V A R    Y C   N V +       +           FP   + +G  TRV
Sbjct: 66  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPV--ITQGPGTRV 123
Query: 126 ICGVTH---------GDPPLTIRWLKDGKPL---SPRFPXXXXXXXXXXXXXXXXXXXAA 173
           I  V H         G+P   I W+K+   +   +PR+                      
Sbjct: 124 I-EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-------SLKDGFLQIENSREE 175
Query: 174 HSGEYTCVASNT-AAQARYSSKLQVKGNLNRLPPSYT 209
             G+Y CVA N+   +   ++ L VK  + R+PP+++
Sbjct: 176 DQGKYECVAENSMGTEHSKATNLYVK--VRRVPPTFS 210

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 6   STVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLK--DGRYLDNSAALSITH 61
            +V PK++P +  + ++V      SL+C       P + +W K  +G     +  L+   
Sbjct: 210 GSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTP-SFRWYKFIEGTTRKQAVVLN-DR 267
Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP--PKIESFAFPFDGLPE 119
           V Q +  L+I       SG Y C V N V  ++    L V  P   KI+    P   +  
Sbjct: 268 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP---PTQTVDF 324
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYT 179
           G      C  T G+P  T+ W+KDGK +                            G Y 
Sbjct: 325 GRPAVFTCQYT-GNPIKTVSWMKDGKAIG-----------HSESVLRIESVKKEDKGMYQ 372
Query: 180 CVASNTAAQARYSSKLQV 197
           C   N    A  S++L++
Sbjct: 373 CFVRNDRESAEASAELKL 390

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
          T+  GE A   C  T G+   T+ WL+ G+ L  SA   +T   +Y S   I SV A   
Sbjct: 19 TVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTFEISSVQASDE 76
Query: 80 GNYSCTVRN 88
          GNYS  V N
Sbjct: 77 GNYSVVVEN 85

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 19 RTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
          R++ V  GE A   C  T G+   T+ WL+ G+ L  SA   +T   +Y S   I SV A
Sbjct: 22 RSMTVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTFEISSVQA 79
Query: 77 RHSGNYSCTVRN 88
             GNYS  V N
Sbjct: 80 SDEGNYSVVVEN 91

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 20/179 (11%)
Query: 36  GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
           G  P+ T++WLK+G+       +    V   +  L+++SV     GNY+C V N      
Sbjct: 44  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 95  QVQRLIVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWL----KDG 144
               L  +V  +         GLP  A T V      +C V + D    I+W+    K+G
Sbjct: 104 HTYHL--DVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNG 160
Query: 145 KPLSP------RFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
               P      +                      A +GEY C  SN   QA  S+ L V
Sbjct: 161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
           +L + + +  K+ P  P +T++ G  A   C  T   I  T+ W+KDG+ + +S      
Sbjct: 307 VLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS------ 357
Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRN 88
                 S+L I+SV     G Y C VRN
Sbjct: 358 -----ESVLRIESVKKEDKGMYQCFVRN 380

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
           +L + + +  K+ P  P +T++ G  A   C  T   I  T+ W+KDG+ + +S      
Sbjct: 301 VLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS------ 351
Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRN 88
                 S+L I+SV     G Y C VRN
Sbjct: 352 -----ESVLRIESVKKEDKGMYQCFVRN 374

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 22/180 (12%)
Query: 36  GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
           G  P+ T++WLK+G+       +    V   +  L+++SV     GNY+C V N      
Sbjct: 44  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 95  QVQRL-IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWL----KD 143
               L +V   P          GLP  A T V      +C V + D    I+W+    K+
Sbjct: 104 HTYHLDVVERSPHRPILQ---AGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKN 159
Query: 144 GKPLSP------RFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
           G    P      +                      A +GEY C  SN   QA  S+ L V
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAAL-------SIT 60
           VPP     +   ++ +G RA L CS   G  P    W KDG  +  + A        S  
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRN-----MVAEDTQVQRLIVNV 103
            +D  +  L+ D V+A  SG Y C  +N     M +E   +  + +NV
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210

>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From Human Obscurin-Like Protein 1 Length = 104

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
          T    ER  L C +++ D P T  W KDG+ ++ S  L +  +D     L++     + S
Sbjct: 21 TFTTSERVVLTCELSRVDFPAT--WYKDGQKVEESELL-VVKMDGRKHRLILPEAKVQDS 77
Query: 80 GNYSCTVRNMVA 91
          G + C    + A
Sbjct: 78 GEFECRTEGVSA 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-45
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-38
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-41
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-40
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-38
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-40
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-32
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-39
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-25
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-39
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-38
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-25
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-37
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-37
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-28
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-27
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-37
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-36
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-31
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-32
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-24
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-16
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-36
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-32
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-10
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-35
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-35
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-35
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-16
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-35
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-34
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-31
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-34
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-29
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-25
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-34
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-34
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-34
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-15
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-33
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-33
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-33
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-31
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-33
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-31
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-16
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-33
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-33
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-31
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-15
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-33
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-32
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-32
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-32
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-29
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-26
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-32
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-27
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-26
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-31
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-29
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-17
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-31
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-30
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-28
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-30
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-14
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-30
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-30
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-29
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-29
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-28
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-27
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-27
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-27
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-26
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-25
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-25
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-24
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-24
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-24
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-23
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-22
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-22
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-22
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-22
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-21
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-21
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-20
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-20
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	7e-19
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-12
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-18
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-17
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-17
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-17
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-16
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-16
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-16
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-10
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-09
2ens_A	96	Advanced glycosylation END product-specific recept	7e-16
2ens_A	96	Advanced glycosylation END product-specific recept	1e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-16
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	9e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-14
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-15
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-15
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-12
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-14
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-08
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-13
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-12
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-12
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-12
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-12
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-11
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	5e-12
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-09
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-11
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	6e-11
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	6e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-10
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-10
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-10
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	8e-10
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-10
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-10
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-09
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-09
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	1e-08
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	3e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-08
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	3e-08
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	2e-05
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	3e-08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	6e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	7e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	9e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	1e-07
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	2e-07
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	1e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-07
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	6e-07
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	1e-06
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	3e-06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	4e-06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	2e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	8e-06
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	4e-05
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	4e-04
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	4e-05
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	6e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	6e-05
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	9e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	5e-04

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  150 bits (381), Expect = 9e-45
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP          L +GE  +  C +T G  P+ I W KD R +       +T V+   +
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE-NTA 61

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
            L +  V+   +G Y+C   N+  +D+   +L V  PP+      P   + +   TR  C
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
            +  G P + + W KD   +       +S ++S + L  + ++S   SG+YTC A N A 
Sbjct: 122 KIG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE-MYNLSVEDSGDYTCEAHNAAG 179

Query: 188 QARYSSKLQVK 198
            A  S+ L+VK
Sbjct: 180 SASSSTSLKVK 190

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  134 bits (340), Expect = 1e-38
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 12/196 (6%)

Query: 8   VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            PP+ +    P R +   E     C I  G   + + W KD   +  S+   ++ V+   
Sbjct: 97  EPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES-V 154

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
           ++L + ++S   SG+Y+C   N     +    L V  PP       P      +GA   +
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK--KPHPVETLKGADVHL 212

Query: 126 ICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
            C +  G PP  + W KD + L    ++ +     ++F + + I +V +A  GEY C AS
Sbjct: 213 ECELQ-GTPPFQVSWHKDKRELRSGKKYKIMS---ENFLTSIHILNVDSADIGEYQCKAS 268

Query: 184 NTAAQARYSSKLQVKG 199
           N          + +K 
Sbjct: 269 NDVGSYTCVGSITLKA 284

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  156 bits (396), Expect = 1e-44
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 4/196 (2%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +    VPP          L +GE  +  C +T G  P+ I W KD R +       +T  
Sbjct: 191 LSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTL- 248

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
            +  + L +  V+   +G Y+C   N+  +D+   +L V  PP+      P   + +   
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 308

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
           TR  C +  G P + + W KD   +       +S ++S +  L + ++S   SG+YTC A
Sbjct: 309 TRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAV-LEMYNLSVEDSGDYTCEA 366

Query: 183 SNTAAQARYSSKLQVK 198
            N A  A  S+ L+VK
Sbjct: 367 HNAAGSASSSTSLKVK 382

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  146 bits (369), Expect = 9e-41
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +    +PP  +    +    +G   +  C I  G  PL + W KDG  L + A L  + +
Sbjct: 95  IKERKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFI 153

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGLPE 119
               + L I      H G Y+C+  N +   +   +L ++   VPP  +      D L  
Sbjct: 154 HN-VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD-LAL 211

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G      C VT G  P+ I W KD + + P     ++ L   ++ L++  V+   +G+YT
Sbjct: 212 GESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMT-LVENTATLTVLKVTKGDAGQYT 269

Query: 180 CVASNTAAQARYSSKLQVKG 199
           C ASN A +   S++L V+ 
Sbjct: 270 CYASNVAGKDSCSAQLGVQE 289

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  145 bits (367), Expect = 2e-40
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 6/192 (3%)

Query: 8   VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            PP+ +    P R +   E     C I  G   + + W KD   +  S+   ++ V+   
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES-V 346

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           ++L + ++S   SG+Y+C   N     +    L V  PP       P +   +GA   + 
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE-TLKGADVHLE 405

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C +  G PP  + W KD + L       +   ++F + + I +V +A  GEY C ASN  
Sbjct: 406 CELQ-GTPPFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVDSADIGEYQCKASNDV 463

Query: 187 AQARYSSKLQVK 198
                   + +K
Sbjct: 464 GSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  139 bits (351), Expect = 3e-38
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 4/192 (2%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             PP             G    L C +  G  P  + W KD R L +     I   + + 
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELRSGKKYKI-MSENFL 439

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           + + I +V +   G Y C   N V  DT V  + +  PP+             G   ++ 
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIS-TVVGEEVQLQ 498

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
             +  G  P+++ W KD   +               + L  +    A++G+YTC   N A
Sbjct: 499 ATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557

Query: 187 AQARYSSKLQVK 198
                 + L V 
Sbjct: 558 GTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  126 bits (317), Expect = 2e-33
 Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP            +GE  +L C +  G   + I W K+   L ++ A  +   +   + 
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNN-VAS 62

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVI 126
           LVI+ V     G Y+C   N V        L++       SFA     +    G      
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C +  G  PL + W KDG+ L     +  S + + ++L  I     +H G+Y C ASN  
Sbjct: 123 CRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQ-ILQTDQSHVGQYNCSASNPL 180

Query: 187 AQARYSSKLQVKGNLNRLPPSYTLVFS 213
             A  S+KL +    + +PP + L   
Sbjct: 181 GTASSSAKLTLSE--HEVPPFFDLKPV 205

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  155 bits (393), Expect = 2e-43
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P +     ++ +  GE   + C +  G    +I W +D R L  +    +      N 
Sbjct: 526 GLPYIRQM-EKKAIVAGETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFP----NG 579

Query: 68  MLVIDSVSARH-SGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRV 125
            L+I++V        Y+C  +N      +    + V V P+I  FAF       G    +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C V  GD PL I W  DG+ +S    +  S +    S+L+I +V A+H+G +TC A N 
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699

Query: 186 AAQARYSSKLQVK 198
           A   ++++ L V 
Sbjct: 700 AGHQQFTTPLNVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  154 bits (390), Expect = 4e-43
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 12/203 (5%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P  +     E    VG+  +L CS+  GD+PL I W  DG+ +     ++ + V +  S+
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVIC 127
           L I++V A H+GN++C  RN+         L V VPP+      P D    +G+  +V C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWIL--EPTDKAFAQGSDAKVEC 736

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNT 185
               G P   + W K        +       +       L ++++   + G Y C A N 
Sbjct: 737 KAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAING 795

Query: 186 AAQARYSSK-LQVKGNLNRLPPS 207
                 +   + V+         
Sbjct: 796 IGSGLSAVIMISVQA-----HHH 813

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  126 bits (317), Expect = 2e-33
 Identities = 53/204 (25%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI--- 59
           +     PP +     E T+  G    L C    G+    I W  DG+ + N+    +   
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPEISWELDGKKIANNDRYQVGQY 481

Query: 60  -THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GL 117
            T      S L I SV A   G Y C  ++ V       +L V   P I          +
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAI 538

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH-SG 176
             G    V C V  G P  +I W +D + L       V    +    L I +V       
Sbjct: 539 VAGETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFPNGT----LIIENVERNSDQA 593

Query: 177 EYTCVASNTAAQ-ARYSSKLQVKG 199
            YTCVA N     AR S ++QV  
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMV 617

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  126 bits (317), Expect = 3e-33
 Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 20/213 (9%)

Query: 4   IFSTVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYL-DNSAALSITH 61
           I S VP  +S    + +T +     +L+C    G      +W K         A +    
Sbjct: 242 ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDR 300

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEG 120
           V Q +  L+I       SG Y C V N V  ++    L V  P   +    P    +  G
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI--DPPTQTVDFG 358

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
                 C  T G+P  T+ W+KDGK +               S+L I SV     G Y C
Sbjct: 359 RPAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMYQC 406

Query: 181 VASNTAAQARYSSKLQVKGNLNRLPPSYTLVFS 213
              N    A  S++L++ G  +  PP     F 
Sbjct: 407 FVRNDRESAEASAELKLGGRFD--PPVIRQAFQ 437

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  111 bits (278), Expect = 5e-28
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 16/207 (7%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
            V         +  +  G  A + C I     D    + W  D        A        
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195

Query: 65  Y-NSMLVIDSVSARHS-GNYSCTVRNMVAEDTQVQRLIVNV----------PPKIESFAF 112
             +  L I  V       +Y C  ++ +  +T++      +          P  +    F
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255

Query: 113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVS 171
                   +   ++C    G P    RW K  +  + +  V ++D +   S  L I    
Sbjct: 256 DMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 172 AAHSGEYTCVASNTAAQARYSSKLQVK 198
              SG+Y CV +N+       + L V 
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVT 341

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.9 bits (202), Expect = 5e-18
 Identities = 29/183 (15%), Positives = 48/183 (26%), Gaps = 11/183 (6%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD---QYNSMLVIDSVS 75
             +    A + C  + G+    I W++ DG  + +   L     D    +      D   
Sbjct: 50  DFSNSTGAEIECKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQ 108

Query: 76  ARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVT--HG 132
             H+  Y+C  RN           +   V    E+       +  G    + C +     
Sbjct: 109 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVA 167

Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSINSVSAAHS-GEYTCVASNTAAQAR 190
           D    + W  D +                 S  L I  V        Y C   +      
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227

Query: 191 YSS 193
             S
Sbjct: 228 RLS 230

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 4/105 (3%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--DNSAALSITHVDQ 64
            VPP+      ++    G  A + C    G     + W K       +        ++  
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIE 108
               L +D++   + G Y C   N +      V  + V       
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.0 bits (179), Expect = 4e-15
 Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 7/124 (5%)

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFDGLPEGARTRVI 126
           + + +   +    ++          T            P                   + 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVA 182
           C  + G+P   I W++         P            F    + +     H+  Y C+A
Sbjct: 61  CKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 183 SNTA 186
            N  
Sbjct: 120 RNQF 123

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  147 bits (373), Expect = 1e-41
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 10/201 (4%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY-- 65
             P +S +     L  GE  ++ C+I      +   W ++          +  H   +  
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269

Query: 66  --NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGA 121
              + L I S     SG + C   N          L V     I  F      +   +G 
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGE 177
              +I        P   +W+   +  + ++       +     + S L +  +     G 
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389

Query: 178 YTCVASNTAAQARYSSKLQVK 198
           YT + SN+   A  +  + V 
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  127 bits (319), Expect = 5e-34
 Identities = 42/211 (19%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 8   VPPKLSPT---NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
               ++     N    +N GE   LI        P   +W+   R   +         ++
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368

Query: 65  ----YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEG 120
               Y S L +  +     G Y+  V N          + VN  P+I +           
Sbjct: 369 SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT-------YDRL 421

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFS-------SLLSINS 169
               + C    G P  TI W           +   PV+V  L+S            SI+S
Sbjct: 422 VNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDS 480

Query: 170 VSAAHSGEYTCVASNTAAQARYSSKLQVKGN 200
            +  H+G   C A N   +         KGN
Sbjct: 481 SAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  114 bits (286), Expect = 2e-29
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 17/221 (7%)

Query: 4   IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           +F   P KL   +            + C +T  ++         G+ L           D
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD---LRFIPD 165

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV------PPKIESFAFPFDGL 117
               +++     A H     C+V     +    ++ I+ V       P +      +  L
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEG-KSVLSEKFILKVRPAFKAVPVVSVSKASYL-L 223

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS----SLLSINSVSAA 173
            EG    V C +      +   W ++      +   N      F+    + L+I+S    
Sbjct: 224 REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN 283

Query: 174 HSGEYTCVASNTAAQARYSSKLQV--KGNLNRLPPSYTLVF 212
            SG + C A+NT   A  ++ L+V  KG +N  P   T VF
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 93.2 bits (231), Expect = 6e-22
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 27/210 (12%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP + P   +  + VG+   L+C+         +KW  +     N         +   +
Sbjct: 35  SPPSIHPGKSDLIVRVGDEIRLLCTDPG-----FVKWTFEILDETN---------ENKQN 80

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
             + +   A ++G Y+CT ++ ++       + V  P K+        G  E   T V C
Sbjct: 81  EWITEKAEATNTGKYTCTNKHGLSNSI---YVFVRDPAKLFLVDRSLYGK-EDNDTLVRC 136

Query: 128 GVTHGDPPLTIRWLK--DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            +T  DP +T   LK   GKPL           D  + ++  +   A H     C     
Sbjct: 137 PLT--DPEVTNYSLKGCQGKPLPKDLRFIP---DPKAGIMIKSVKRAYHRLCLHCSVDQ- 190

Query: 186 AAQARYSSKLQVK-GNLNRLPPSYTLVFSQ 214
             ++  S K  +K     +  P  ++  + 
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 19/120 (15%)

Query: 76  ARHSGNYSCTV----RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
           AR + ++ C +    R                PP I         +  G   R++C    
Sbjct: 4   ARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLI-VRVGDEIRLLCTDPG 62

Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
                 ++W  +    +          ++  +        A ++G+YTC   +  + + Y
Sbjct: 63  -----FVKWTFEILDETN---------ENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 18/112 (16%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA----------- 56
             P++       T +      L C    G    TI W          +A           
Sbjct: 411 TKPEIL------TYDRLVNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLN 463

Query: 57  LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
            S     +      IDS + +H+G   C   N V + +           K +
Sbjct: 464 SSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQ 515

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  142 bits (360), Expect = 7e-40
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 15/198 (7%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-----H 61
            +      T P+  L VGE   + C     +    + W  + + L+      ++      
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEG 120
                    + SV+   +G Y+C+     ++      + +     I +     D  + + 
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNSSEDYEIDQY 341

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
                        P +   W    K                   +S         GEY  
Sbjct: 342 EEFCFSVRFK-AYPQIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGEYIF 395

Query: 181 VASNTAAQARYSSKLQVK 198
            A N  AQ      L ++
Sbjct: 396 HAENDDAQFTKMFTLNIR 413

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  122 bits (307), Expect = 2e-32
 Identities = 28/212 (13%), Positives = 51/212 (24%), Gaps = 28/212 (13%)

Query: 8   VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
               ++ TN      +   E         K    +   W    +                
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCE-----QKGLDN 376

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
              +          G Y     N  A+ T++  L +   P++         L E + ++ 
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV---------LAEASASQA 427

Query: 126 ICGVTHGDPPLTIRWLKDG----------KPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            C    G P  +  W K                     N      + S  ++N   A   
Sbjct: 428 SCFSD-GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
               C A N+   +  +  L   G    +   
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPFPFIQDG 518

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  109 bits (272), Expect = 2e-27
 Identities = 17/203 (8%), Positives = 51/203 (25%), Gaps = 12/203 (5%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                       ++V    +L   +      ++  W+     L+      + +  +    
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQPHFDLQN--RGVVS 104

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
           +VI  ++   +G Y   +++     T +  + +                    +  ++C 
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLY--TLRRPYFRKMENQDALVC- 161

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
           ++   P   + W+               +            +      +  C A N   +
Sbjct: 162 ISESVPEPIVEWVLCDSQGES-----CKEESPAVVKKEEKVLHELFGTDIRCCARNELGR 216

Query: 189 ARYSS-KLQVKGNLNRLPPSYTL 210
                  + +        P   L
Sbjct: 217 ECTRLFTIDLNQTPQTTLPQLFL 239

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  104 bits (259), Expect = 9e-26
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 17/198 (8%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           ++   L  T         E    +  I++      ++W+            S        
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQG-----ESCKEESPAV 190

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
                  +      +  C  RN +  + T++  + +N  P+      P   L  G    +
Sbjct: 191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWI 247

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTC 180
            C   H +    + W  + K L       +S   +           ++SV+   +G YTC
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307

Query: 181 VASNTAAQARYSSKLQVK 198
            +S        S+ + + 
Sbjct: 308 SSSK---HPSQSALVTIV 322

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 71.7 bits (175), Expect = 1e-14
 Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 23/151 (15%)

Query: 79  SGNYSCTVRNMVAEDTQVQ-----------------RLIVNVPPKIESFAFPFDGLPEGA 121
                C + N    D+ V                   L       +   A     +   A
Sbjct: 7   LPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE--VDVSA 64

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
              +   V      ++  W+     L+ +   +    +     + I  ++   +GEY   
Sbjct: 65  SITLQVLVD-APGNISCLWVFKHSSLNCQ--PHFDLQNRGVVSMVILKMTETQAGEYLLF 121

Query: 182 ASNTAAQARYSSKLQVKGNLN-RLPPSYTLV 211
             + A        + ++  L   L   Y   
Sbjct: 122 IQSEATNYTILFTVSIRNTLLYTLRRPYFRK 152

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  140 bits (353), Expect = 2e-39
 Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 15/198 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-----HV 62
           +      T P+  L VGE   + C     +    + W  + + L+      ++       
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGA 121
                   + SV+   +G Y+C+     ++   V    +     I +     D  + +  
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT---IVEKGFINATNSSEDYEIDQYE 342

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
                       P +   W    K      P     LD+  S +S         GEY   
Sbjct: 343 EFCFSVRFK-AYPQIRCTWTFSRKSF----PCEQKGLDNGYS-ISKFCNHKHQPGEYIFH 396

Query: 182 ASNTAAQARYSSKLQVKG 199
           A N  AQ      L ++ 
Sbjct: 397 AENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  105 bits (263), Expect = 1e-26
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           ++   L  T         E    +  I++      ++W+      ++    S   V +  
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
              V+  +      +  C  RN +  +      I            P   L  G    + 
Sbjct: 196 --KVLHEL---FGTDIRCCARNELGRECTRLFTIDLNQTPQ--TTLPQLFLKVGEPLWIR 248

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTCV 181
           C   H +    + W  + K L       +S   +           ++SV+   +G YTC 
Sbjct: 249 CKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308

Query: 182 ASNTAAQARYSSKLQVK 198
           +S   +Q   S+ + + 
Sbjct: 309 SSKHPSQ---SALVTIV 322

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  100 bits (250), Expect = 8e-25
 Identities = 17/187 (9%), Positives = 47/187 (25%), Gaps = 11/187 (5%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                       ++V    +L   +      ++  W+     L+          ++    
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQP--HFDLQNRGVVS 104

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
           +VI  ++   +G Y   +++     T +  + +           P+    E     ++C 
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDA-LVCI 162

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
                P   + W+            +  +            +      +  C A N   +
Sbjct: 163 SE-SVPEPIVEWVLCDSQ-----GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGR 216

Query: 189 ARYSSKL 195
                  
Sbjct: 217 ECTRLFT 223

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 79.3 bits (195), Expect = 3e-17
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 71  IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
            +  S   S +Y     +   ED     L       +   A   + +   A   +   V 
Sbjct: 19  NNDSSVGKSSSYPMVSESP--EDLGC-ALRPQSSGTVYE-AAAVE-VDVSASITLQVLVD 73

Query: 131 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
                ++  W+     L+ +   ++ +    S  + I  ++   +GEY     + A    
Sbjct: 74  -APGNISCLWVFKHSSLNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYT 130

Query: 191 YSSKLQVKGNLN-RLPPSYTLV 211
               + ++  L   L   Y   
Sbjct: 131 ILFTVSIRNTLLYTLRRPYFRK 152

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 66.6 bits (162), Expect = 5e-13
 Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 6/102 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
               ++ TN      + +      S+  K    +   W    +                 
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNG 377

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
             +          G Y     N  A+ T++  L +    K  
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  134 bits (338), Expect = 3e-39
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY--- 65
              +  + PE  +       L C+ + G     ++W  D          +      Y   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 66  ----NSMLVIDSVSARHSGNYSCTVRNMV--AEDTQVQRLIVNVPPKIESFAFPFDGLPE 119
                + +   SV+   +G Y+C V      +      +LIV VPP   +   P      
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS-SATI 121

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAA 173
           G R  + C    G PP    W KDG  +         F  +   L+  +  L  + +SA+
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 174 HSGEYTCVASNTAAQARYSSKLQVKG 199
            +GEY+C A N       S+ ++++ 
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------ 61
           VPP     N   +  +G RA L CS   G  P    W KDG  +  +   +         
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
           ++     LV D +SA  +G YSC  RN          + +  
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  137 bits (346), Expect = 2e-38
 Identities = 49/193 (25%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
                            G+ A L C ++ G  P +  WL+    +      S  +     
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQLR---SKKYSLLGG 274

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
           S L+I +V+   SG Y+C V       +    L V VPP   +   P +    E      
Sbjct: 275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN--HPSNLYAYESMDIEF 332

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C V+ G P  T+ W+K+G  + P     +       S L I  V  +  G Y CVA N 
Sbjct: 333 ECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVG----GSNLRILGVVKSDEGFYQCVAENE 387

Query: 186 AAQARYSSKLQVK 198
           A  A+ S++L V 
Sbjct: 388 AGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  101 bits (253), Expect = 3e-25
 Identities = 46/217 (21%), Positives = 73/217 (33%), Gaps = 17/217 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYN 66
                     +     G    L CS    D  +  IKW KDG  L          +   N
Sbjct: 20  RSLHFVSEPSDAVTMRGGNVLLNCSAE-SDRGVPVIKWKKDGLILALGMDDRKQQLP--N 76

Query: 67  SMLVIDSV-----SARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDG-LP 118
             L+I ++          G Y C      +     +  +++V  P +  S          
Sbjct: 77  GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ--TESITAF 134

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G    + C V  GDP  TI W K+ + L+P  P +   +   S  L I+ +    SG Y
Sbjct: 135 MGDTVLLKCEVI-GDPMPTIHWQKNQQDLNP-IPGDSRVVVLPSGALQISRLQPGDSGVY 192

Query: 179 TCVASNTA-AQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
            C A N A  +    +++++  +       Y L    
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           VPP                    C+++ G    T+ W+K+G  +  S    I       S
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVG----GS 365

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
            L I  V     G Y C   N         +LIV  P
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  128 bits (324), Expect = 3e-37
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 5/195 (2%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S   P +     + T  +GE A L C I  G     IKW + G+ L  S    ++   + 
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGART 123
           ++ L + +      G Y+C   N V E     +L++   P+        +      G+  
Sbjct: 63  HT-LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTL 121

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
           R+      G P   + W    K L     + + + + ++ L+  N     H+G+Y    S
Sbjct: 122 RLHVMYI-GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180

Query: 184 NTAAQARYSSKLQVK 198
           N          ++++
Sbjct: 181 NVFGTVDAILDVEIQ 195

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  133 bits (335), Expect = 5e-37
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 12/194 (6%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQY 65
              P     + +     G+   + C     +      + K+G+ ++ +    IT H    
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTR 124
              L+  +      G Y+C V N V +      +L V   PK E        + +G    
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328

Query: 125 VICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
           + C VT G P   + W  + KPLS  R  V         S L I  V     G Y C A+
Sbjct: 329 IPCKVT-GLPAPNVVWSHNAKPLSGGRATVT-------DSGLVIKGVKNGDKGYYGCRAT 380

Query: 184 NTAAQARYSSKLQV 197
           N      + + +QV
Sbjct: 381 NEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  109 bits (273), Expect = 4e-28
 Identities = 38/221 (17%), Positives = 63/221 (28%), Gaps = 24/221 (10%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---VD 63
           T          E+T   G    L C +        I W K     D +A ++        
Sbjct: 98  TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA 157

Query: 64  QYNSMLVIDSVS---ARHSGNYSCTVRNMVAEDTQVQ---RLIVNVPPKIESFAFP-FDG 116
             +  L    V+         Y CT +N   ++  V     +             P    
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217

Query: 117 LP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINS 169
           +        G  T + C     +P     + K+GK ++      ++    +    L   +
Sbjct: 218 VSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 170 VSAAHSGEYTCVASNTAAQA-RYSSKLQVKGNLNRLPPSYT 209
                 G YTC   N   +  ++S KL V        P Y 
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-----APKYE 312

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  106 bits (266), Expect = 4e-27
 Identities = 36/193 (18%), Positives = 52/193 (26%), Gaps = 10/193 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P L     E          L C I   D  +   W KDG+  +     +    D    
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD--EG 62

Query: 68  MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
            LV     A   G+Y C          ++V            +       + EG   ++ 
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI-EGRPFQLD 121

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---LDSFSSLLSINSVS---AAHSGEYTC 180
           C + +  P   I W K      P   V   D          L    V+    +   +Y C
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVC 181

Query: 181 VASNTAAQARYSS 193
            A N A       
Sbjct: 182 TAKNAAVDEEVVL 194

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 7   TVPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
              PK          +  G+  ++ C +T G     + W  + + L              
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG------RATVT 358

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
           +S LVI  V     G Y C   N   +      + VN
Sbjct: 359 DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  136 bits (343), Expect = 6e-37
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 19/192 (9%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           +P     +N  + +   +  +  C         T  W  +G+ L  S       +   N 
Sbjct: 466 LPKPSISSNNSKPVEDKDAVAFTCEP--EAQNTTYLWWVNGQSLPVS---PRLQLSNGNR 520

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
            L + +V+   +  Y C ++N V+ + +    L V   P     + P      GA   + 
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C     +P     W  +G P               + +L I  ++  ++G Y C  SN A
Sbjct: 581 CHSA-SNPSPQYSWRINGIPQQ------------HTQVLFIAKITPNNNGTYACFVSNLA 627

Query: 187 AQARYSSKLQVK 198
                S    + 
Sbjct: 628 TGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  128 bits (323), Expect = 3e-34
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           V      P ++  N    +   +  +L C         T  W  + + L  S       +
Sbjct: 284 VYAEPPKPFITSNNS-NPVEDEDAVALTCEPE--IQNTTYLWWVNNQSLPVS---PRLQL 337

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGA 121
              N  L + SV+    G Y C ++N ++ D +    L V   P   + +  +     G 
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
              + C     +PP    WL DG                 +  L I++++  +SG YTC 
Sbjct: 398 NLSLSCHAA-SNPPAQYSWLIDGNIQQH------------TQELFISNITEKNSGLYTCQ 444

Query: 182 ASNTAAQARYSSKLQVKGNLNRLPPSYT 209
           A+N+A+    ++   +  +     PS +
Sbjct: 445 ANNSASGHSRTTVKTITVSAELPKPSIS 472

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  115 bits (289), Expect = 1e-29
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 22/201 (10%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           ++     P   + +        G   SL C     + P    WL DG             
Sbjct: 374 ILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGNIQ---------- 422

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL---P 118
             Q+   L I +++ ++SG Y+C   N  +  ++     + V  ++   +   +      
Sbjct: 423 --QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           +       C         T  W  +G+ L     + +S+ +     L++ +V+   +  Y
Sbjct: 481 DKDAVAFTCEP--EAQNTTYLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDARAY 535

Query: 179 TCVASNTAAQARYSS-KLQVK 198
            C   N+ +  R     L V 
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  111 bits (280), Expect = 2e-28
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 21/214 (9%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
             ++  +P     +N  + +   +  +  C         T  W  + + L  S  L +++
Sbjct: 104 FRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE--TQDATYLWWVNNQSLPVSPRLQLSN 161

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEG 120
               N  L + +V+   + +Y C  +N V+        L V   P   + +        G
Sbjct: 162 G---NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
               + C     +PP    W  +G                 +  L I +++  +SG YTC
Sbjct: 219 ENLNLSCHAA-SNPPAQYSWFVNGTFQQS------------TQELFIPNITVNNSGSYTC 265

Query: 181 VASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
            A N+      ++   +   +   PP   +  + 
Sbjct: 266 QAHNSDTGLNRTTVTTI--TVYAEPPKPFITSNN 297

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  102 bits (256), Expect = 3e-25
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 21/188 (11%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P   + +    +   GE  +L C     + P    W  +G +  +               
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAA-SNPPAQYSWFVNGTFQQS------------TQE 249

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRV 125
           L I +++  +SG+Y+C   N      +     + V   PPK    +   + + +     +
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL 309

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C          + W  + + L     + +S   + +  L++ SV+    G Y C   N 
Sbjct: 310 TCEPE-IQNTTYL-WWVNNQSLPVSPRLQLS---NDNRTLTLLSVTRNDVGPYECGIQNE 364

Query: 186 AAQARYSS 193
            +      
Sbjct: 365 LSVDHSDP 372

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 81.5 bits (201), Expect = 6e-18
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 23/184 (12%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT---------------HVDQYNSM 68
           G+   L+       +     W K  R   N   +                   +   N+ 
Sbjct: 14  GKEVLLLVHNLPQHLF-GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72

Query: 69  LVIDSVSARHSGNYSCTVRN--MVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           L+I ++    +G Y+  V    +V E+   Q  +    PK    +     + +       
Sbjct: 73  LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFT 132

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C         T  W  + + L     + +S   + +  L++ +V+   +  Y C   N  
Sbjct: 133 CEPE--TQDATYLWWVNNQSLPVSPRLQLS---NGNRTLTLFNVTRNDTASYKCETQNPV 187

Query: 187 AQAR 190
           +  R
Sbjct: 188 SARR 191

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.7 bits (178), Expect = 5e-15
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P     + P+ +   G   +L C     +      W  +G    +              +
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQQH------------TQV 605

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
           L I  ++  ++G Y+C V N+           + V 
Sbjct: 606 LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 16/90 (17%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLK---------------DGKPLSPRFPVNVSDLDSFSS 163
           EG    ++             W K                 +  +P    +  ++   ++
Sbjct: 13  EGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71

Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSS 193
            L I ++    +G YT     +      ++
Sbjct: 72  SLLIQNIIQNDTGFYTLHVIKSDLVNEEAT 101

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  129 bits (327), Expect = 1e-36
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
                      +    GE A ++C ++       + WL     +   +      +   N+
Sbjct: 97  QKLTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLA--NN 153

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFD-GLPEGARTR 124
            L I +++    G Y C  R       D +   +IVNVPP I      F+     G    
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213

Query: 125 VICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             C  + G P   I W ++GK +    ++ +  S+     + L++ ++  +  G Y C A
Sbjct: 214 FSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN-----TELTVRNIINSDGGPYVCRA 267

Query: 183 SNTAAQARYSSKLQVKGNLNRLPPS 207
           +N A +    + LQV          
Sbjct: 268 TNKAGEDEKQAFLQVFV-----QHH 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  115 bits (290), Expect = 3e-31
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 14/209 (6%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQ 64
           S    +++ +  +  L+VGE     C+   G+ P +I W    G  + ++  + +   + 
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAI-GE-PESIDWYNPQGEKIISTQRVVVQK-EG 57

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDG-LPEGAR 122
             S L I + +   +G Y C   +   +  +    L +                  +G  
Sbjct: 58  VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE--VVSPQEFKQGED 115

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             V+C V+   P   + WL   + ++       + L + +  L I +++ +  G Y C  
Sbjct: 116 AEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEG 172

Query: 183 SNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
              A        + V  N   +PP+ ++ 
Sbjct: 173 RVEARGEIDFRDIIVIVN---VPPAISMP 198

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 8   VPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           VPP +S    +   T   GE  +  C  + G     I W ++G+ ++ +    +      
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILK---GS 246

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
           N+ L + ++     G Y C   N   ED +   L V V     
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  131 bits (332), Expect = 2e-36
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 3   VIFSTVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
            +    P  + P     +  V  G    L C  + G     I W K G  L +       
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDLPSDK----A 268

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPE 119
             + +N  L I +VS   SG Y C   N +        + V   P       P +  L  
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD--EPKNLILAP 326

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G   R++C    G+P  T++W+ +G+PL    P    ++      +       +    Y 
Sbjct: 327 GEDGRLVCRAN-GNPKPTVQWMVNGEPLQSAPPNPNREVA--GDTIIFRDTQISSRAVYQ 383

Query: 180 CVASNTAAQARYSSKLQV 197
           C  SN       ++ + V
Sbjct: 384 CNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  119 bits (300), Expect = 6e-32
 Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITH 61
           +  S  P           +  G   +L C+   G     I W+      +     +S  H
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH 169

Query: 62  VDQYNSMLVIDSVSAR-HSGNYSCTVRNMVAEDTQVQ---RLIVNVPPKIESFAFPFDGL 117
               N  L   +V  +    +YSC  R       Q +    L V     +      F   
Sbjct: 170 ----NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYP 225

Query: 118 P---------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 168
                      G    + C  + G P   I W K G  L    P + +  ++F+  L I 
Sbjct: 226 QGTASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDL----PSDKAKFENFNKALRIT 280

Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
           +VS   SGEY C+ASN     R++  ++VK
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVK 310

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 98.0 bits (244), Expect = 5e-24
 Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 7   TVPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           T PP     +  +  ++  +   + C    G+   +  W ++ R+ + +    ++   + 
Sbjct: 14  TQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMR-RR 71

Query: 66  NSMLVIDSVSAR----HSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEG 120
           +  LVID  S      + G Y C  RN        + RL V+  P           + EG
Sbjct: 72  SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEG 131

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAA-HS 175
           A   + C    G P   I W+                    S      L  ++V      
Sbjct: 132 APLTLQCNPPPGLPSPVIFWMSSSMEPIT-------QDKRVSQGHNGDLYFSNVMLQDMQ 184

Query: 176 GEYTCVASNTAAQARYSS---KLQVKGNLNRLPPSYTLVFSQAS 216
            +Y+C A               L+V         + + ++ Q +
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 98  RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 157
           +  +  PP I   +     +       + C    G+P  +  W ++ +  +      VS 
Sbjct: 10  QNELTQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSM 68

Query: 158 LDSFSSLLS---INSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKG 199
                +L+           + GEY C A N    A     +LQV  
Sbjct: 69  RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  126 bits (318), Expect = 3e-36
 Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 26/204 (12%)

Query: 16  NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS 75
              +  +  E   L   +T     L + W  +G  +  S  +      +    L I+  +
Sbjct: 9   TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW-LQINEPT 67

Query: 76  ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI--------------ESFAFPFDGLP--- 118
               G Y   + +      +   L      +               ++ A    GLP   
Sbjct: 68  PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127

Query: 119 ---EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAA 173
              EG    + C V  GDPP  + WLK+ K L  +    +      +     +IN VS A
Sbjct: 128 TIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY--FTINGVSTA 184

Query: 174 HSGEYTCVASNTAAQARYSSKLQV 197
            SG+Y  V  N          + V
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 77.2 bits (190), Expect = 1e-17
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
              L       T+  G+  +L C++  GD P  + WLK+ + L  +   ++       + 
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
             I+ VS   SG Y   V+N    +T    + V +P
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG +  +   VT+    L + W  +G  +     V          L  IN  +    G+Y
Sbjct: 18  EGIQ--LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKY 74

Query: 179 TCVASNTAAQARYSSKLQVKG 199
                +     + +  L  + 
Sbjct: 75  VMELFDGKTGHQKTVDLSGQA 95

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  127 bits (321), Expect = 8e-36
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
                      +    GE A ++C +    +P TI W   GR +     +    +   N+
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NN 155

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFD-GLPEGARTR 124
            L I  +     G Y C  R +   +   +   +IVNVPP +++     +     G    
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT 215

Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVAS 183
           ++C    G P  T+ W KDG+P+      +        SS L+I +V      EY C+A 
Sbjct: 216 LVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274

Query: 184 NTAAQARYSSKLQVKG 199
           N A +   S  L+V  
Sbjct: 275 NKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  117 bits (294), Expect = 8e-32
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQ 64
            + P       +  ++VGE    +C +        I W      +   N   +S+   D 
Sbjct: 6   DIVPS------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD-GLPEGAR 122
            +S L I + +   +G Y C V       ++    + +      ++   P      EG  
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN--APTPQEFKEGED 117

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             ++C V     P TI W   G+ +  +  V    L +    L I  +     G Y C  
Sbjct: 118 AVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEG 174

Query: 183 SNTAAQARYSSKLQV 197
              A        +QV
Sbjct: 175 RILARGEINFKDIQV 189

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 175
             G     +C V        I W   +G+ LSP    ++V   D  SS L+I + +   +
Sbjct: 15  SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74

Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
           G Y CV +      +  + + VK
Sbjct: 75  GIYKCVVTAEDGT-QSEATVNVK 96

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  124 bits (313), Expect = 2e-35
 Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 10  PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---- 65
             +     +  +   E   L C+ + G     ++W             +      Y    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 66  ---NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFDGLPEG 120
              +S +   SV+ + +G Y+C V     ++       L V VPP   + + P   +  G
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS-SVTIG 119

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVSAA 173
            R  + C    G PP    W KDG  +          F  +   +D  S  L  + V+A 
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 174 HSGEYTCVASNTAAQARYSSKLQVK 198
            SGEY C A N    A  S    + 
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.6 bits (201), Expect = 4e-19
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT------- 60
           VPP     +   ++ +G RA L CS   G  P    W KDG  +  + A           
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            +D  +  L+ D V+A  SG Y C  +N      + +   ++   
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  128 bits (323), Expect = 3e-35
 Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 17/196 (8%)

Query: 4   IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THV 62
           I S+ P   +       L V    SL+C    G    + +W K         A+ +   V
Sbjct: 207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRV 265

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGA 121
            Q +  L+I       SG Y C V N V  ++    L V  P   +    P    +  G 
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI--DPPTQTVDFGR 323

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
                C  T G+P  T+ W+KDGK +               S+L I SV     G Y C 
Sbjct: 324 PAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMYQCF 371

Query: 182 ASNTAAQARYSSKLQV 197
             N    A  S++L++
Sbjct: 372 VRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  105 bits (263), Expect = 9e-27
 Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 20/216 (9%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLD-NSAALSITHVDQ 64
           V         +  +  G  A + C I     D    + W  D        A     ++  
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161

Query: 65  YNSMLVIDSVSARHS-GNYSCTVRNMVAEDTQVQ----RLIVNVP-----PKIESFAFPF 114
            +  L I  V       +Y C  ++ +  +T++     RL++  P     P+  +     
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221

Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAA 173
             L       ++C    G P  + RW K  +  + +  V ++D +   S  L I      
Sbjct: 222 LELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280

Query: 174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
            SG+Y CV +N+       + L V       P S  
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTA-----PLSAK 311

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 18/222 (8%)

Query: 8   VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD- 63
             P      P   ++      A + C    G+    I W++ DG  + +   L     D 
Sbjct: 2   KGPVFL-KEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59

Query: 64  --QYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEG 120
              +      D     H+  Y+C  RN   +  ++   +   V    E+       +  G
Sbjct: 60  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI-RG 118

Query: 121 ARTRVICGV--THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSINSVSAAHS-G 176
               + C +     D    + W  D +                 S  L I  V       
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178

Query: 177 EYTCVASNTAAQARYSS----KLQVKGNLNRLPPSYTLVFSQ 214
            Y C   +        S    +L +   ++   P    +  +
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  123 bits (310), Expect = 4e-35
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 7/196 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
           + P          +     A+L+C +T G     +KW + G+ +            +   
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES--FAFPFDGL--PEGAR 122
             L+I SV+   +  Y     N     +    L V VP KI           +    G  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             +    + G P   I W K    +       V    SF+SL+  N V    +G Y   A
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 183 SNTAAQARYSSKLQVK 198
            N     + + +L V 
Sbjct: 181 KNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
             +   ++C VT G P   ++W + GK +     ++ +           L I SV+   +
Sbjct: 18  YQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ--LIIASVTDDDA 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
             Y   A+N       ++ L+V+       P   
Sbjct: 75  TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  122 bits (308), Expect = 5e-35
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 14/185 (7%)

Query: 18  ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSAR 77
            +    GE A ++C ++       + WL     +   +      +   N+ L I +++  
Sbjct: 11  PQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLA--NNNLQILNINKS 67

Query: 78  HSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDP 134
             G Y C  R       D +   +IVNVPP I      F+     G      C  + G P
Sbjct: 68  DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSP 126

Query: 135 PLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192
              I W ++GK +  + ++ +  S+     + L++ ++  +  G Y C A+N A +    
Sbjct: 127 EPAISWFRNGKLIEENEKYILKGSN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQ 181

Query: 193 SKLQV 197
           + LQV
Sbjct: 182 AFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 8   VPPKLSPTNP--ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           VPP +S        T   GE  +  C  + G     I W ++G+ ++ +    +      
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKG---S 150

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
           N+ L + ++     G Y C   N   ED +   L V V
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  125 bits (315), Expect = 1e-34
 Identities = 47/226 (20%), Positives = 65/226 (28%), Gaps = 31/226 (13%)

Query: 9   PPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            P   P   E+     G+   L C    G       W+KDG  L  S       V     
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS-----ERVLVGPQ 61

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG----------- 116
            L + + S   SG YSC  R            + + P   +      +            
Sbjct: 62  RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121

Query: 117 -------------LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 163
                        +P     R  C    G+P  +I WLK+G+       +    L     
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180

Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
            L + SV  +  G YTCV  N     R +  L V       P    
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 226

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  117 bits (294), Expect = 2e-31
 Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           T P ++        +         C    G+   +I WLK+GR       +    +    
Sbjct: 123 TRPERMDKKL--LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF---PFD-GLPEGAR 122
             LV++SV     GNY+C V N      Q   L V              P +     G+ 
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL------------DSFSSLLSINSV 170
               C V   D    I+WLK  +    +   + +              D    +LS+++V
Sbjct: 240 VEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVK 198
           +   +GEYTC+A N+   + +S+ L V 
Sbjct: 299 TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 13/117 (11%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           L      P   +     +T  +G      C +   D    I+WLK      +      T 
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTP 273

Query: 62  ------------VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
                        D+   +L + +V+   +G Y+C   N +        L+V    +
Sbjct: 274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  129 bits (326), Expect = 2e-34
 Identities = 48/232 (20%), Positives = 74/232 (31%), Gaps = 43/232 (18%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           V         S         VGER  +      G  P  IKW K+G  L+++      H 
Sbjct: 324 VHEKPFVAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESN------HT 376

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAF--PFDGLP 118
            +   +L I  VS R +GNY+  + N ++++ Q     L+V VPP+I   +   P D   
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ 436

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-------------------- 158
            G    + C V    PP  I W    +      P     +                    
Sbjct: 437 YGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNK 496

Query: 159 ------------DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
                           ++ ++   +A  S  Y C A N   +        V 
Sbjct: 497 IEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  124 bits (311), Expect = 1e-32
 Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 17/204 (8%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSI------ 59
            +   +   +    L+VGE+  L C+   + ++ +   W        +   ++       
Sbjct: 222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281

Query: 60  -THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL- 117
            + + ++ S L ID V+    G Y+C   + +        + V+  P +   +     + 
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341

Query: 118 -PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
              G R R+      G PP  I+W K+G PL     +          +L+I  VS   +G
Sbjct: 342 ATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTI------KAGHVLTIMEVSERDTG 394

Query: 177 EYTCVASNTAAQARYSSKLQVKGN 200
            YT + +N  ++ + S  + +   
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVY 418

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  118 bits (297), Expect = 1e-30
 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 28/215 (13%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG------------------ 48
           T  P+++   P+      E  SL C+         + W K G                  
Sbjct: 548 TRGPEIT-LQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605

Query: 49  -RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
              L    A   ++      ++ + + S +  G+Y C  ++   +        + V  ++
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665

Query: 108 E-SFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
             +     +      G    V C  + G+PP  I W KD + L     + + D    +  
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKD---GNRN 721

Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           L+I  V     G YTC A +    A+  +   ++G
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  114 bits (286), Expect = 3e-29
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 12/207 (5%)

Query: 5   FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
            S   P+LS      T+       + C    G   L   W  +    +    ++      
Sbjct: 27  VSLDLPRLSIQKDILTIKANTTLQITCR---GQRDLDWLWPNNQSGSEQRVEVTECSDGL 83

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL----PEG 120
           +   L I  V    +G Y C  R           +     P I S +     +     + 
Sbjct: 84  FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143

Query: 121 ARTRVICGVTHGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
               + C  +  +  +++     + + +     ++           +I S   +++G   
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS----KKGFTIPSYMISYAGMVF 199

Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPP 206
           C A       +    + V         
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDV 226

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  113 bits (283), Expect = 8e-29
 Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 57/252 (22%)

Query: 8   VPPKLSP---TNPERTLNVGERASLICSITKGDIPLTIKWLKDG---------------- 48
           VPP++      +P  +   G   +L C++     P  I W                    
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478

Query: 49  ----------------RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92
                             ++ +         +  ++  +   +A  S  Y C   N V  
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538

Query: 93  DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 152
             +V    V   P+I     P     E     + C          + W K G    P   
Sbjct: 539 GERVISFHVTRGPEITL--QPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHV 595

Query: 153 VNV-------------------SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193
             +                   S+  +   ++ + + S    G+Y C+A +   + R+  
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655

Query: 194 KLQVKGNLNRLP 205
             Q+       P
Sbjct: 656 VRQLTVLERVAP 667

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 85.2 bits (210), Expect = 4e-19
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           L +   V P ++     +T ++GE   + C+ + G+ P  I W KD   L   + + +  
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK- 716

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
               N  L I  V     G Y+C   +++         I+    +  + 
Sbjct: 717 --DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 80.6 bits (198), Expect = 1e-17
 Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 7/137 (5%)

Query: 71  IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
           + S        + C      +       L     P++         +      ++ C   
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSL---DLPRLSIQKDILT-IKANTTLQITC--- 53

Query: 131 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
            G   L   W  +      R  V       F   L+I  V    +G Y C    T   + 
Sbjct: 54  RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASV 113

Query: 191 YSSKLQVKGNLNRLPPS 207
               +Q   +      S
Sbjct: 114 IYVYVQDYRSPFIASVS 130

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  126 bits (317), Expect = 2e-34
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 17/192 (8%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P   +    +     G+  +L C    G+    IKW K             +       +
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQ-------TSKWLSSEPL 258

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGARTRVIC 127
           L I +V     G Y C   N+   DT   R+I++  P         D     G+  R  C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--VITDTEADIGSDLRWSC 316

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
             + G P   +RWL+DG+PL+ +  + VS        L  + +    SG Y CVA N   
Sbjct: 317 VAS-GKPRPAVRWLRDGQPLASQNRIEVSG-----GELRFSKLVLEDSGMYQCVAENKHG 370

Query: 188 QARYSSKLQVKG 199
               S++L V+ 
Sbjct: 371 TVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  113 bits (284), Expect = 1e-29
 Identities = 42/219 (19%), Positives = 66/219 (30%), Gaps = 27/219 (12%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           + F  +    +       +  G      CS       L+ +WL +       A       
Sbjct: 95  LRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS 154

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----------RLIVNVPPKIESFA 111
            Q    L I    A   GNYSC   + +   T+                    P I++  
Sbjct: 155 -QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA-K 212

Query: 112 FPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 170
           FP D     G    + C    G+P   I+W K     + ++        S   LL I +V
Sbjct: 213 FPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNV 264

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
                G Y C A N   +  Y  ++ +        P + 
Sbjct: 265 DFEDEGTYECEAENIKGRDTYQGRIIIHA-----QPDWL 298

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  101 bits (254), Expect = 2e-25
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 10/197 (5%)

Query: 7   TVPPKLSPTNPERTL----NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +  P      P  TL    +  E+ +L C   + + P T +W  +G  L          V
Sbjct: 2   SYGPVFE-EQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLV 59

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
                +++ + V A+ +G+Y C   N      ++   L      +  +       + EG 
Sbjct: 60  A--GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
                C      P L+ RWL +  P             +  +L  I    A+  G Y+C 
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY-IAKTEASDLGNYSCF 176

Query: 182 ASNTAAQARYSSKLQVK 198
           A++       S   +  
Sbjct: 177 ATSHIDFITKSVFSKFS 193

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P       +   ++G      C  + G     ++WL+DG+ L +   + ++       
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVS-----GG 346

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            L    +    SG Y C   N          L V
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  120 bits (302), Expect = 4e-34
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 9/193 (4%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYN 66
             ++     +  ++VGE    +C +        I W      +   N   +S+   D  +
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD-GLPEGARTR 124
           S L I + +   +G Y C V       ++    + +      ++   P      EG    
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQEFKEGEDAV 119

Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
           ++C V     P TI W   G+ +  +  V    L +  + L I  +     G Y C    
Sbjct: 120 IVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSN--NYLQIRGIKKTDEGTYRCEGRI 176

Query: 185 TAAQARYSSKLQV 197
            A        +QV
Sbjct: 177 LARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 64.1 bits (156), Expect = 8e-13
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
                      +    GE A ++C +    +P TI W   GR +     +    +   N+
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NN 155

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
            L I  +     G Y C  R +   +   + + V V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  119 bits (300), Expect = 9e-34
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYN 66
             P++  +      +     +L C++T      +   W K+G        L+ T  +  N
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGV------ELTATRKNASN 55

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
               I+   A  SG Y C V + V+       + V   P I       +   EG    + 
Sbjct: 56  MEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITG-HKRSENKNEGQDAMMY 113

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
           C    G P     W K    +            + + ++++ L  +N       GEY C 
Sbjct: 114 CKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172

Query: 182 ASNTAAQARYSSKLQVK 198
           A+N+   A  S+ L+V+
Sbjct: 173 ATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALS-----ITHV 62
             P ++        N G+ A + C    G       W K    +    + S     I + 
Sbjct: 91  AAPDITGHKRSENKNEGQDAMMYCKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
           + Y  + +++       G Y C   N +   +    L V V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  122 bits (308), Expect = 9e-34
 Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 13/200 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P          +       L C +        I W KD R +                
Sbjct: 6   TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GIC 61

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP--------E 119
            L+I   S + +G Y   +++   +D    +L+     ++         L          
Sbjct: 62  TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
               ++   VT+    L + W  +G  +     V          L  IN  +    G+Y 
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKYV 180

Query: 180 CVASNTAAQARYSSKLQVKG 199
               +     + +  L  + 
Sbjct: 181 MELFDGKTGHQKTVDLSGQA 200

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  121 bits (304), Expect = 4e-33
 Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 22/210 (10%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                     +  +  E   L   +T     L + W  +G  +  S  +      +    
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW- 165

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP--------------F 114
           L I+  +    G Y   + +      +   L      +  +                   
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225

Query: 115 DGLP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 168
            GLP      EG    + C V  GDPP  + WLK+ K L+     N+      ++  +IN
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284

Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
            VS A SG+Y  V  N          + V 
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
               L       T+  G+  +L C++  GD P  + WLK+ + L +    ++       +
Sbjct: 221 RARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
              I+ VS   SG Y   V+N    +T    + V +P
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 5/99 (5%)

Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 160
               P    +      +       + C V +      I W KD + +S        D   
Sbjct: 4   PFTGPHFVEY--LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKD 58

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
               L I   S   +G Y  +  +   + +   KL  + 
Sbjct: 59  GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  122 bits (307), Expect = 1e-33
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 7/197 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD-NSAALSITHVDQYN 66
           + P          +     A+L+C +T G     +KW + G+ +  +     I       
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG----LPEGAR 122
             L+I SV+   +  Y     N     +    L V VP KI                G  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             +    + G P   I W K    +       V    SF+SL+  N V    +G Y   A
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 183 SNTAAQARYSSKLQVKG 199
            N     + + +L V  
Sbjct: 181 KNRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            +P  L           GE  S+    + G     I W K    +DN+    +     + 
Sbjct: 103 HLPKTLEGMGA-VHALRGEVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFT 160

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           S++  + V  + +G Y    +N    D +   L V   P
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  118 bits (298), Expect = 2e-33
 Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 12/199 (6%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           +T  P  +       +  G  A+    I+ G     + W +DG+ +  S    +      
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

Query: 66  N-SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV---NVPPKIESFAFPFDGL--PE 119
             + L I +V+  +SG YS    N   + T    L+V     PP    F      +   +
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN---FVQRLQSMTVRQ 117

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G++ R+   VT G P   +++ +DG  +       +S      SLL I       SG Y+
Sbjct: 118 GSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYS 175

Query: 180 CVASNTAAQARYSSKLQVK 198
             A+N+  +A  +++L V+
Sbjct: 176 VNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAHSG 176
           EG+       ++ G P   + W +DG+ +S      V +S  D  + L  I +V+ A+SG
Sbjct: 19  EGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT-IPAVTKANSG 76

Query: 177 EYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
            Y+  A+N + QA  +++L VK      PP+
Sbjct: 77  RYSLKATNGSGQATSTAELLVKA--ETAPPN 105

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           V   T PP         T+  G +  L   +T G     +K+ +DG  + +S    I+  
Sbjct: 97  VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQE 155

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
               S L+I       SG YS    N V   T    L+V
Sbjct: 156 GDLYS-LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  122 bits (306), Expect = 2e-33
 Identities = 34/207 (16%), Positives = 57/207 (27%), Gaps = 20/207 (9%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP   P   E   +      L C I        I W K+ + L        T   Q   
Sbjct: 127 KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG----TKYSQSGQ 182

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI---ESFAFPFDGLP-----E 119
            L+I +     SG Y C V            +       +   +   F     P      
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242

Query: 120 GARTRVIC---GVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSA 172
           G    + C     +     + I W      +       + +  S      + L   +V+ 
Sbjct: 243 GEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTE 302

Query: 173 AHSGE-YTCVASNTAAQARYSSKLQVK 198
            + G  YTC   N       ++ + ++
Sbjct: 303 EYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  116 bits (291), Expect = 3e-31
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 21/214 (9%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDI--------PLTIKWLKDGRYLDNSAALSIT 60
           P  +          +GE  S  C   +  +           + W K G+           
Sbjct: 29  PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGK------TRRPL 82

Query: 61  HVDQYNSMLVIDSVSARHSGN-YSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLP 118
           +    N  L I + ++  S   Y CTV     +  Q   R  +  PP      +   G  
Sbjct: 83  NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE-LGTH 141

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           +     + CG+ +      I W K+ + L     ++ +        L I++     SG Y
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQEL----IIDGTKYSQSGQNLIIHNPELEDSGRY 197

Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF 212
            C       + +    +     L  +P       
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK 231

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNS----A 55
           VI S         +P+  + +GE A++ C+          + I W     ++        
Sbjct: 222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281

Query: 56  ALSITHVDQYNSMLVIDSVSARHSGN-YSCTVRNMVAEDTQVQRLIV 101
           ++  +      + L  ++V+  + GN Y+C   N   + T    +++
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  120 bits (303), Expect = 3e-33
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 16/203 (7%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P + P+ PE  +  GE  +L C         +++W                  +   S 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWT------LDPESPGST 52

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
           L   + + +++G Y CT        +    L V  P    +       + EG    + C 
Sbjct: 53  LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCL 112

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
           +T      ++  +++G     R  V             I       S  Y C       +
Sbjct: 113 ITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMV-NGR 168

Query: 189 ARYSSKLQVK-GNLNRLPPSYTL 210
              S+ + +K   ++  PP   L
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKL 191

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  114 bits (286), Expect = 9e-31
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 11/202 (5%)

Query: 4   IFSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           ++   P        +  T+  G+ A L C IT   +  ++  +++G            + 
Sbjct: 83  LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR---KTVYF 139

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----RLIVNVPPKIESFAFPFDGL 117
                  +I       S  Y C       E T          +   PP+I+         
Sbjct: 140 FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV-R 198

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSG 176
             G   +++C  T+ +    +   +    L      +   +       LS+N+V    +G
Sbjct: 199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAG 258

Query: 177 EYTCVASNTAAQARYSSKLQVK 198
            Y+CVASN       +   QV 
Sbjct: 259 IYSCVASNDVGTRTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 75.4 bits (185), Expect = 2e-16
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYN 66
            PP++     +     GE A ++CS T  ++   +   +    L+         +  +  
Sbjct: 185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
             L +++V  + +G YSC   N V   T      V      
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  118 bits (296), Expect = 5e-33
 Identities = 23/198 (11%), Positives = 57/198 (28%), Gaps = 21/198 (10%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM-LVIDSVSARH 78
            +    +        K      + ++ + + +       +        + + ++ +    
Sbjct: 13  EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72

Query: 79  SGNYSCTVRNMVAEDTQVQRLIVNVPPKIE----------------SFAFPFDG-LPEGA 121
            G Y+  +++  A +     L+ +V  K++                 F       +    
Sbjct: 73  EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
              + C V +      I W KD + +S        D       L I   S   +G Y  +
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREISVDEKH---DFKDGICTLLITEFSKKDAGIYEVI 189

Query: 182 ASNTAAQARYSSKLQVKG 199
             +   + +   KL  + 
Sbjct: 190 LKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
               +       L C +        I W KD R +                 L+I   S 
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFSK 180

Query: 77  RHSGNYSCTVRNMVAEDTQVQRLIV 101
           + +G Y   +++   +D    +L+ 
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLKLVD 205

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  119 bits (301), Expect = 8e-33
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 13/214 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP+      ++    G  AS +C  T GD    + W K G+ +++    +I   +   +
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63

Query: 68  MLVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
           +L I  + + R    Y C  +N V E T   +L V    ++ S     D  P        
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-VSDLDSFSSLLSINSVSAAHSGEYT 179
               ++C  + G+P   I W KD  P+ P      +  L S +  L I S      G+Y 
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYE 180

Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFS 213
           CVA+N+ A  RYSS   +   +  + P ++++  
Sbjct: 181 CVATNS-AGVRYSSPANLYVRVQNVAPRFSILPM 213

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  116 bits (293), Expect = 1e-31
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 13/196 (6%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           +  P +      + +     A+++C+ + G+    I W KD   +D SA+       + +
Sbjct: 106 SGFPNIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLR-S 163

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD--GLPEGART 123
             L I+S      G Y C   N           L V V      F+       +  G   
Sbjct: 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV 223

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
            + C    G P   ++W++  + L+P   + V           +       S  YTCVA 
Sbjct: 224 NITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGRN-------VLELTDVKDSANYTCVAM 275

Query: 184 NTAAQARYSSKLQVKG 199
           ++       +++ VK 
Sbjct: 276 SSLGVIEAVAQITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 71.4 bits (175), Expect = 7e-15
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 101 VNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
              PP+      P D     G     +C  T GDP   + W K GK ++ +    +   +
Sbjct: 3   GEEPPRFIKE--PKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDE 59

Query: 160 SFSSLLSINSV-SAAHSGEYTCVASNTAAQARYSSKLQVK 198
           S  ++L I  + +      Y CVA N+  +    +KL V 
Sbjct: 60  SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           V    V P+ S       +  G   ++ C    G     +KW++    L     + +   
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPV--- 254

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
                  V++    + S NY+C   + +     V ++ V   PK 
Sbjct: 255 ----GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  117 bits (294), Expect = 9e-33
 Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 15/204 (7%)

Query: 5   FSTVPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVD 63
              + P      PE  +  G+   L+C         L+ +WL +   +  +       V 
Sbjct: 4   SGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR-FVS 62

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
           Q N  L I +V A   GNYSC V +         + + +   P+  +  +P D + +   
Sbjct: 63  QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122

Query: 123 TRVICGVT-------HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
              + G          G+P   IRW K  +P+        +++ +  ++L I ++     
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST-----AEISTSGAVLKIFNIQLEDE 177

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G Y C A N   + ++ +++ V+ 
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQA 201

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  117 bits (294), Expect = 1e-32
 Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 14/203 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP+ + T  ++T   G  AS IC  T GD    I W K G+ + N     I   D   S
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63

Query: 68  MLVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
           +L I  + + R    Y C   N V E +   RL V    +I       D  P        
Sbjct: 64  VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAHSGE 177
               ++C  + G+P   I W KD  P+        +     +S  +L  I     +  G+
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQ-IEQSEESDQGK 181

Query: 178 YTCVASNTAAQARYSS-KLQVKG 199
           Y CVA+N+A     +   L V+G
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 101 VNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
              PP+      P D     G     IC  T GDP   I W K GK +S +    +   D
Sbjct: 3   GETPPRFT--RTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDD 59

Query: 160 SFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 198
              S+L I  +        Y CVASN   +   S++L V 
Sbjct: 60  GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  117 bits (293), Expect = 1e-32
 Identities = 47/222 (21%), Positives = 75/222 (33%), Gaps = 40/222 (18%)

Query: 15  TNPERTLNV--GERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITH-------- 61
           T PE+ +    GE A L C  T   +   PL I+WL           + I +        
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 62  ---------------VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
                          V   ++ + + ++     G Y C V+       +   L V V P 
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123

Query: 107 IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 165
                   DG    G   ++ C    G  PL   W K     +   P      +  S ++
Sbjct: 124 GTRC--FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA---EMTSPVI 178

Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           S+ + S+ +SG Y+C   N     +   +L V      +PPS
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV------VPPS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 75.1 bits (184), Expect = 1e-16
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           V P  +    + +  +G    L C   +G +PL  +W K           +    +  + 
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP---TPWLAEMTSP 176

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           ++ + + S+ +SG YSCTV+N V  D  + RL V VPP
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV-VPP 213

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  117 bits (295), Expect = 2e-32
 Identities = 51/210 (24%), Positives = 70/210 (33%), Gaps = 23/210 (10%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           T P ++        +         C    G+   +I WLK+GR       +    +    
Sbjct: 15  TRPERMDKKL--LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
             LV++SV     GNY+C V N      Q   L V              GLP       G
Sbjct: 72  WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLG 129

Query: 121 ARTRVICGVTHGDPPLTIRWLK-----------DGKPLSPRFPVNVSDLDSFSSLLSINS 169
           +     C V   D    I+WLK           DG P        +S+       L + +
Sbjct: 130 SDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188

Query: 170 VSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           VS    GEY C A+N    A  +  L V G
Sbjct: 189 VSERDGGEYLCRATNFIGVAEKAFWLSVHG 218

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 76.9 bits (189), Expect = 3e-17
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
           P     R  C    G+P  +I WLK+G+       +    L      L + SV  +  G 
Sbjct: 28  PAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPP 206
           YTCV  N     R +  L V       P 
Sbjct: 87  YTCVVENKFGSIRQTYTLDVLERSPHRPI 115

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 17/141 (12%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-----------DGRY 50
           L      P   +     +T  +G      C +   D    I+WLK           DG  
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTP 165

Query: 51  LDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
                   I+   + +  L + +VS R  G Y C   N +    +   L V+ P   E  
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE- 224

Query: 111 AFPFDGLPEGARTRVICGVTH 131
               + +       V     H
Sbjct: 225 ----ELVEADEAGSVHHHHHH 241

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  119 bits (299), Expect = 2e-32
 Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 25/212 (11%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-DQYN 66
            P     +     +    +        K      + ++ + + +       +    +   
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP-------- 118
             + ++ +     G Y+  +++  A +     L+ +V  K++  A               
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225

Query: 119 ---------EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSI 167
                          + C V +      I W KD + +    +      D       L I
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-----DFKDGICTLLI 280

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
              S   +G Y  +  +   + +   KL  + 
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  117 bits (294), Expect = 1e-31
 Identities = 23/213 (10%), Positives = 57/213 (26%), Gaps = 17/213 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           + P           +     +  C            W KD    ++S  L +       +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTEDSPRLEVESKG-NKT 58

Query: 68  MLVIDSVSARHSGNYSCTVRNMV------AEDTQVQRLIVNVPPKIESFAFPFDGLP--- 118
            +    +     G YSC V +          D +  + ++ +  + +    P        
Sbjct: 59  KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118

Query: 119 --EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAH 174
             E  + R             + ++ + K +   P++ +++        +  +  +    
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF-MEKLQDED 177

Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
            G YT    +  A    +  L           +
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  120 bits (302), Expect = 3e-32
 Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 6   STVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD 63
               PK+    PE      G    L C    G+   TI W + DG+ +   A        
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARKA-----RRH 254

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGAR 122
           + N +L I +     +G+Y C   N   ++    +L     P         D  +     
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ--IINDIHVAMEES 312

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
               C    G P  T RWLK+G PL  R  + +         L+I  V+ + +G Y CVA
Sbjct: 313 VFWECKAN-GRPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQCVA 366

Query: 183 SNTAAQARYSSKLQV 197
            N       S++L V
Sbjct: 367 ENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  111 bits (280), Expect = 4e-29
 Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 25/218 (11%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           + F+ +    + T    ++  G+   L+C        L+  W+ +          +   V
Sbjct: 96  LQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD---NRRFV 152

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV---QRLIVNVPPKIESFAFPFDGLP- 118
            Q    L I  V     GNY+C V N V     +     LI+     +  +    +    
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212

Query: 119 ------EGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVS 171
                 +G   ++ C    G+P  TI W + DGKP++ +     +     + +L I +  
Sbjct: 213 ETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARK-----ARRHKSNGILEIPNFQ 266

Query: 172 AAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
              +G Y CVA N+  +     +L          P++ 
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYA-----QPNWV 299

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  104 bits (261), Expect = 2e-26
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
            ++  L C + KG+    I+W  +G  +D       + VD   S+L+ +    + +G Y 
Sbjct: 23  EKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQ 79

Query: 84  CTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 142
           C   N      ++  +L        ++       +  G    ++CG       L+  W+ 
Sbjct: 80  CIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF 139

Query: 143 DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-----KLQV 197
           +  P        VS        L I  V  +  G YTCV +NT    +         L+ 
Sbjct: 140 NEYPSYQDNRRFVSQET---GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN 196

Query: 198 KGNLNRLPPSYTLVFSQ 214
            G +    P   + F +
Sbjct: 197 DGVMGEYEPKIEVQFPE 213

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 104 PPKI----ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
            P          FP D   E  + ++ C V  G+P   IRW  +G  +        S +D
Sbjct: 5   GPVFVQEPSHVMFPLDS--EEKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61

Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTA 186
              SLL  N      +G Y C+A+N+ 
Sbjct: 62  --GSLLINNPNKTQDAGTYQCIATNSF 86

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  118 bits (296), Expect = 4e-32
 Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 11/194 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
             P+ +    +  L         C  T G  P  I W  D   + N++ +          
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 67  -SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDGLPEGART 123
            S+ ++   S     N +C V +   E  Q+    L V  PP++    +  +        
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
            + C       P    W     PL P             + L I  V    +    C  +
Sbjct: 236 TLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQLLIRPVDKPINTTLICNVT 288

Query: 184 NTAAQARYSSKLQV 197
           N     +    +QV
Sbjct: 289 NALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  104 bits (261), Expect = 4e-27
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 27/207 (13%)

Query: 17  PERTLNVGERASLICSITKGDIPLT----IKWLKDGRYLDNSAALSITHV---------- 62
            +    +G+  +L C +   ++ +T    + W + G     +                  
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67

Query: 63  -------DQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQRLIVNVPPKIESFAFPF 114
                  +  N+ L +  +     GNY+C          +    L V   P+  +     
Sbjct: 68  VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127

Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSA 172
             L         C  T G PP  I W  D   +    + P  +S   + +SL  +   S 
Sbjct: 128 Q-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186

Query: 173 AHSGEYTCVASNTAAQA--RYSSKLQV 197
                 TC   + + +     +  L V
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTV 213

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 30/120 (25%)

Query: 100 IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT----IRWLKDGKPLS-----PR 150
           +V  P ++  F         G    + C +   +  +T    + W + G+  S       
Sbjct: 3   VVQAPTQVPGF--------LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54

Query: 151 FPVNVSDLDSFSSL------------LSINSVSAAHSGEYTCVASNTAAQARYSS-KLQV 197
              + S+      +            L +  +     G YTC+       +R     L+V
Sbjct: 55  QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  116 bits (291), Expect = 5e-32
 Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           T   K+        +         C    G+   T++WLK+G+       +    V   +
Sbjct: 19  TNTEKMEKRL--HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 75

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
             L+++SV     GNY+C V N          L V    +         GLP       G
Sbjct: 76  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR--PILQAGLPANASTVVG 133

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----------DSFSSLLSINSV 170
                +C V   D    I+W+K  +    ++  +               S + +L++ +V
Sbjct: 134 GDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVK 198
           + A +GEY C  SN   QA  S+ L V 
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 81.9 bits (202), Expect = 4e-19
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 90  VAEDTQVQRLIVNVPPKIESFAFP---FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 146
           +AED   +       P   +          +P     +  C    G+P  T+RWLK+GK 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKE 59

Query: 147 LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
                 +    + +    L + SV  +  G YTCV  N      ++  L V       P 
Sbjct: 60  FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119

Query: 207 SYT 209
              
Sbjct: 120 LQA 122

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 6   STVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
           S   P L    P   +  VG     +C +   D    I+W+K      +          +
Sbjct: 114 SRHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLK 172

Query: 65  ----------YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
                        +L + +V+   +G Y C V N + +  Q   L V    +    
Sbjct: 173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  117 bits (294), Expect = 1e-31
 Identities = 38/226 (16%), Positives = 64/226 (28%), Gaps = 29/226 (12%)

Query: 7   TVPPKLSPTNPER-----------TLNVGERASLICSITK------GDIPLTIKWLKDGR 49
           T+ P                        GE  +L C              + + W K+  
Sbjct: 5   TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64

Query: 50  YLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
                       +   +  L +       SG Y CT RN    D     L V        
Sbjct: 65  ARTVPGEEET-RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL 123

Query: 110 FAFPFD-GLPEGARTRVIC----GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
               +   L       ++C      T     + I+W KD   L       +S     ++ 
Sbjct: 124 PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--TTH 181

Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSS----KLQVKGNLNRLPP 206
           L ++ V+   +G Y CV +      +Y+     +L++K       P
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIP 227

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  103 bits (259), Expect = 2e-26
 Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 35/226 (15%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICS----ITKGDIPLTIKWLKDGRYLDNSAAL 57
           L +F      L   +  + L +     L+C      T+    + I+W KD   LD     
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN-- 170

Query: 58  SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV---------PPKIE 108
                 +  + L++  V+   +G Y C +              + +          P I 
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230

Query: 109 SFAFPFD--GLPEGARTRVICGVTH--GDPPLTIRWLKDGKPL------------SPRFP 152
           S   P        G+R  + C V    G P  T+ W                    PR  
Sbjct: 231 S---PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQE 287

Query: 153 VNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 197
            + ++ +     L  + V+      ++ CV  NT +     + ++ 
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  112 bits (282), Expect = 4e-31
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 27/209 (12%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ---- 64
                      T   G   +L C +     P  + WL+DG+ L+ + +            
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 65  ----YNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDG-LP 118
                 S L I S+    +G Y C V        +Q   + +   P       P D  + 
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE--EPEDRTVA 119

Query: 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
                 + C    G P P+ + WL+D  PL+                 S++      +  
Sbjct: 120 ANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQ--------RSLHVPGLNKTSS 170

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPP 206
           ++C A N        +       +  LP 
Sbjct: 171 FSCEAHNAKGVTTSRTAT-----ITVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             P       +RT+      +L C    G   P+ + WL+D   L  +            
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQRS---- 159

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
             L +  ++   + ++SC   N     T     I  +P +
Sbjct: 160 --LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLPQQ 195

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  114 bits (287), Expect = 6e-31
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 18/205 (8%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P + P+ PE  +  G   +L C         +++W                + D  +S
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNG-----SVEWDGPPS------PHWTLYSDGSSS 51

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
           +L  ++ + +++G Y CT        +    L V  P +  +       + E     + C
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111

Query: 128 GVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
            +T       +  ++  G+PL      + S         +I+      S +Y C A    
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG----FTIHRAKFIQSQDYQCSALM-G 166

Query: 187 AQARYSSKLQVK-GNLNRLPPSYTL 210
            +   S  +++K   +   PP+ TL
Sbjct: 167 GRKVMSISIRLKVQKVIPGPPALTL 191

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  110 bits (276), Expect = 3e-29
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 13/203 (6%)

Query: 4   IFSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITH 61
           ++   P +      +   +   + A L C +T   +   +  ++  GR L      S + 
Sbjct: 83  LYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP 142

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----RLIVNVPPKIESFAFPFDG 116
                    I       S +Y C+      +   +      + ++  PP +         
Sbjct: 143 ----WHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELV- 197

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSINSVSAAHS 175
              G   +++C  +  D    +    +   L+ P+     ++       L+++ V   H+
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257

Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
           G Y+CVASN   +   S   +V 
Sbjct: 258 GNYSCVASNVQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-VDQYN 66
            PP L+    E     GE A ++CS +  D+   +    +   L         +   Q  
Sbjct: 185 GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKV 244

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
             L +D V  +H+GNYSC   N+  + +      V      
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  113 bits (283), Expect = 1e-30
 Identities = 39/205 (19%), Positives = 59/205 (28%), Gaps = 26/205 (12%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +        L      R    GE  +L C   K  +   + + ++G+             
Sbjct: 76  IQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-------- 127

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF-AFPFDGLPEGA 121
             +NS L I   +  H+G Y C+        +    + V          A     L EG 
Sbjct: 128 -HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN 186

Query: 122 RTRVICGVT----HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
              + C            L   +    K L  R         + SS   I +     SG 
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---------NTSSEYQILTARREDSGL 237

Query: 178 YTCVASNTAAQARYSS---KLQVKG 199
           Y C A+         S   +LQV G
Sbjct: 238 YWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  107 bits (269), Expect = 1e-28
 Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 24/189 (12%)

Query: 10  PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
             ++   P  ++   E  +L C +       + +W  +G     S               
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-----------TPSY 50

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
            I S S   SG Y C        D    +L ++    +           EG    + C  
Sbjct: 51  RITSASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQV--SSRVFTEGEPLALRCHA 106

Query: 130 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
                   + + ++GK               ++S L+I   + +H+G Y C         
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFF---------HWNSNLTILKTNISHNGTYHCSGMGKHRYT 157

Query: 190 RYSSKLQVK 198
                + VK
Sbjct: 158 SAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 13/93 (13%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSAAL 57
           + +    P  +   +    L  G   +L C       +  + L   +    + L      
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT- 221

Query: 58  SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90
                   +S   I +     SG Y C      
Sbjct: 222 --------SSEYQILTARREDSGLYWCEAATED 246

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  115 bits (290), Expect = 2e-30
 Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 12/198 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------V 62
           P  +   N   T     + +L+C    G+    I W +       +              
Sbjct: 2   PHIIQLKN--ETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
              +S L I  V    SG Y C   + +    +   L +   PK  S    +    EG  
Sbjct: 59  QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYY-SWEGNP 117

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCV 181
             + C V   +PP +I W +D   L  +   N+         +L I   S    G Y C 
Sbjct: 118 INISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176

Query: 182 ASNTAAQARYSSKLQVKG 199
           A+N          L +  
Sbjct: 177 ATNHIGTRFQEYILALAD 194

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THVDQYN 66
             PK            G   ++ C +   + P +I W +D   L      ++ T+     
Sbjct: 99  YAPKFISNQTIYYSWEGNPINISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            +L I   S    G Y+CT  N +    Q   L +   P
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  110 bits (276), Expect = 4e-30
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P ++         V E A+ +C++        I W ++   +      +   + +   +
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFD--TRYSIRENGQL 63

Query: 69  LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVI 126
           L I SV     G Y CT  N V         L V + PKI     P +  + EG +  + 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP--PINVKIIEGLKAVLP 121

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C    G+P  ++ W+K    L     + V +    S  L I++V    +G+Y CVA N+ 
Sbjct: 122 CTTM-GNPKPSVSWIKGDSALRENSRIAVLE----SGSLRIHNVQKEDAGQYRCVAKNSL 176

Query: 187 AQARYSS-KLQVK 198
             A     KL+V+
Sbjct: 177 GTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           + PK++       +  G +A L C+   G+   ++ W+K    L  ++ +++      + 
Sbjct: 99  MKPKITRPPINVKIIEGLKAVLPCTTM-GNPKPSVSWIKGDSALRENSRIAVLE----SG 153

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVP 104
            L I +V    +G Y C  +N +    +++ +L V V 
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  109 bits (273), Expect = 6e-30
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 21/196 (10%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-YNS 67
             KL     + T++ G+   L CS+  G     I+W+KDG  + N   L I   +Q +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 68  MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
            L + SV    +G Y C V +    E +Q   L V   P       P D  +P  A  ++
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTV--EPKDLAVPPNAPFQL 118

Query: 126 ICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
            C    G P P+TI W +    +    P          S   +N      S  ++C A N
Sbjct: 119 SCEA-VGPPEPVTIVWWRGTTKIGGPAP----------SPSVLNVTGVTQSTMFSCEAHN 167

Query: 185 TA--AQARYSSKLQVK 198
               A +R ++ + ++
Sbjct: 168 LKGLASSR-TATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-FSSLLSINSVSAAHSGE 177
           +G   ++ C V  G     I+W+KDG  +     + +   +  +   LS+ SV  + +G 
Sbjct: 16  QGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74

Query: 178 YTCVASNTA-AQARYSSKLQVKGNLNRLPPSYT 209
           Y C   +    +      L V+G      P +T
Sbjct: 75  YWCQVEDGGETEISQPVWLTVEG-----VPFFT 102

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
             P  +    +  +       L C       P+TI W +    +   A           S
Sbjct: 97  GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----------PS 146

Query: 68  MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIV 101
             V++      S  +SC   N+     ++   + +
Sbjct: 147 PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score =  108 bits (272), Expect = 8e-30
 Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 25/194 (12%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           +     L    P   +   +  +L C   +     +I+W  +G  +              
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------- 49

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
                    +   SG Y+C        D     L V     +     P     EG    +
Sbjct: 50  TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTVLFEWLVLQ--TPHLEFQEGETIML 105

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C      P + + + ++GK                    SI   + +HSG+Y C  +  
Sbjct: 106 RCHSWKDKPLVKVTFFQNGKSQKFS---------HLDPTFSIPQANHSHSGDYHCTGNIG 156

Query: 186 AAQARYSS-KLQVK 198
                     + V+
Sbjct: 157 YTLFSSKPVTITVQ 170

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  109 bits (274), Expect = 1e-29
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 37/194 (19%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
              K++     + +  G+   L C  T G   +  +W K  + + N             S
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIPNGN----------TS 65

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDG---------- 116
            L+ ++V  + +G Y C V N    +     +L V   P+    +               
Sbjct: 66  ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 117 ----LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 172
               L  G+   + C    G P    +W K+  PL+               L  +  V  
Sbjct: 126 TSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTH----------ETKKLYMVPYVDL 174

Query: 173 AHSGEYTCVASNTA 186
            H G Y C   N  
Sbjct: 175 EHQGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 98  RLIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 156
             +V    KI     P    +  G   ++ C  T G P +  +W K  K +         
Sbjct: 12  SGLVPRGSKITVN--PESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP-------- 60

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 198
             +  +S L  N+V    +G Y C  +N         S+L V 
Sbjct: 61  --NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 12/103 (11%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S    ++      + L  G    L C    G      +W K+   L +            
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHET---------- 163

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKI 107
             + ++  V   H G Y C V N   ++D++   +I++    +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  112 bits (280), Expect = 2e-29
 Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 12/197 (6%)

Query: 8   VPPKLSPTNPERTLNV-----GERASLICSITKGDIPLTIKWLKDGRYLDNSAAL-SITH 61
             P       +  L        +     C+   G  P  + W    +       + +   
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
                S   +      H  + +C V   +    +   L V   P++    F  +   +  
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
             ++ C      P     W      L               +L     ++ + +G Y C 
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLPKGVEA------QNRTLFFKGPINYSLAGTYICE 302

Query: 182 ASNTAAQARYSSKLQVK 198
           A+N         ++ + 
Sbjct: 303 ATNPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 98.7 bits (245), Expect = 2e-24
 Identities = 32/229 (13%), Positives = 58/229 (25%), Gaps = 31/229 (13%)

Query: 9   PPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAA--------- 56
           P ++   N      +G    L CS            + W K       + A         
Sbjct: 14  PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73

Query: 57  --------LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKI 107
                   +        +  + +  +     G Y C        + + Q  L V   P  
Sbjct: 74  VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133

Query: 108 ESFAFPFDGLP----EGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFS 162
                          +       C   +G PP  + W    K  +  +   N +   +  
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
           S   +     AH     C+ +    + + S  L V+       P  T+ 
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-----EPEVTIE 237

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 59.8 bits (144), Expect = 9e-11
 Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 7/104 (6%)

Query: 7   TVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
              P+++    +           L C            W           +L      Q 
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG------SLPKGVEAQN 282

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
            ++     ++   +G Y C   N +   +    + +     +E 
Sbjct: 283 RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEH 326

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  110 bits (277), Expect = 2e-29
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 17/206 (8%)

Query: 4   IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHV 62
           +F   P KL              A + C +T   +      ++ DG+ L           
Sbjct: 86  VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVS-QYSLIECDGKSLPTDLTFV---P 141

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIV----NVPPKIESFAFPFDGL 117
           +    + + +   A H     C  +       +    L V       P +         L
Sbjct: 142 NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSH-LL 200

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS------FSSLLSINSVS 171
            +G    V+C +      +   WLK          V  +              L+I+S  
Sbjct: 201 KKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSAR 260

Query: 172 AAHSGEYTCVASNTAAQARYSSKLQV 197
              SG + C A+NT   A  ++ L+V
Sbjct: 261 VDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 94.0 bits (233), Expect = 4e-23
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 23/191 (12%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           PP + P   E  +  G+  SL C          ++W     +           V+   + 
Sbjct: 12  PPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFN--------EMVENKKNE 58

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
            + +   A  +G Y+C+  N +     V    V  P K+     P     E +   V C 
Sbjct: 59  WIQEKAEATRTGTYTCSNSNGLTSSIYV---FVRDPAKLFLVGLPLF-GKEDSDALVRCP 114

Query: 129 VTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
           +T          ++ DGK L           +  + +   N   A H     C A     
Sbjct: 115 LT-DPQVSQYSLIECDGKSLPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQR-DG 169

Query: 188 QARYSSKLQVK 198
              +S K  +K
Sbjct: 170 TWLHSDKFTLK 180

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 15/108 (13%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 163
           PP I         +  G    + C          +RW                 +++  +
Sbjct: 12  PPSIHPAQSELI-VEAGDTLSLTC---IDPDF--VRWTFKTYFNE--------MVENKKN 57

Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
                   A  +G YTC  SN    + Y   ++    L  +       
Sbjct: 58  EWIQEKAEATRTGTYTCSNSNGLTSSIYVF-VRDPAKLFLVGLPLFGK 104

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  109 bits (272), Expect = 2e-28
 Identities = 39/195 (20%), Positives = 56/195 (28%), Gaps = 17/195 (8%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
            E     C +   +   TI W KD      S     + + Q+   L         SG+Y 
Sbjct: 20  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGHYY 78

Query: 84  CTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG---LPEGARTRVICGVTH-----GDPP 135
           C VRN                     +         LP      ++C          +  
Sbjct: 79  CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138

Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-- 193
             ++W KD KPL           D     L + +V+  H G YTC AS T    +Y    
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDR----LIVMNVAEKHRGNYTCHASYTYLGKQYPITR 194

Query: 194 --KLQVKGNLNRLPP 206
             +           P
Sbjct: 195 VIEFITLEENKPTRP 209

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  101 bits (253), Expect = 8e-26
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 33/224 (14%)

Query: 2   LVIFSTVPPKLSPTNP--ERTLNVGERASLICSIT-----KGDIPLTIKWLKDGRYLDNS 54
                  P          ++ L V     L+C        + +    ++W KD + L   
Sbjct: 94  AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD 153

Query: 55  AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT---------QVQRLIVNVPP 105
                 H       L++ +V+ +H GNY+C                             P
Sbjct: 154 N----IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209

Query: 106 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-------- 157
            I S A     +  G++ ++IC VT G       W  +G  +    PV   D        
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 158 ---LDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQV 197
                +  ++L+I+ + +      +TC A NT        +L  
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 65.9 bits (160), Expect = 8e-13
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
                    C +   +   TI W KD            S +      L         SG 
Sbjct: 18  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGH 76

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
           Y CV  N++   R     +   N   L  +   +F Q
Sbjct: 77  YYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 60.5 bits (146), Expect = 5e-11
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAAL--------- 57
           T P  +SP N    +++G +  LIC++T G +     W  +G  +D    +         
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 265

Query: 58  --SITHVDQYNSMLVIDSVSARH-SGNYSCTVRNMVAEDTQVQRLIVNV 103
             +        ++L I  + +R     ++C  +N    D    +LI  V
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  102 bits (256), Expect = 2e-27
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 19/186 (10%)

Query: 20  TLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
             ++G +  L CS+      +T  +WLK G  L                       S   
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQ 60

Query: 79  SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
            G YSC       E      + ++ PP++++     + + EG    ++C      P    
Sbjct: 61  WGEYSCVFLP---EPMGTANIQLHGPPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDW 116

Query: 139 RWLKDGKPLSPRFPVNVSD-----LDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYS 192
            W K                         S L I +++  A  G+Y C  +++    +  
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 176

Query: 193 SKLQVK 198
             L+V+
Sbjct: 177 ITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG-----RYLDNSAALSITHV 62
            PP++        +N GE A L+C            W K         ++ S +      
Sbjct: 82  GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141

Query: 63  DQYNSMLVIDSVS-ARHSGNYSCTVRNMVAEDTQVQRLIV 101
            Q  S L I++++     G Y C   +    D  +  L V
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  102 bits (256), Expect = 5e-27
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P++     +  +   E A+L C +  G    TI+W KDG  +  +   S     +  ++
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 69  ---LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGL--PEGAR 122
                +     +  G Y C  +N V +  ++   L + V      F          +G  
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD--DFRVEPKDTRVAKGET 125

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAAHSGEY 178
             + CG   G P  T+ W+KDG PL     ++         +    L I++V     G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 179 TCVASNTAAQARYSS-KLQVK 198
            C+A N       S  KL V+
Sbjct: 186 KCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +  + +         +  +  GE A L C   KG    T+ W+KDG  LD+  A+S    
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161

Query: 63  DQYNSM----LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESF 110
            +   +    L+I +V     GNY C  +N+V    +   +LIV V       
Sbjct: 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHH 214

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  102 bits (256), Expect = 5e-27
 Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 17/201 (8%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
            PP++     +  ++ GE A+L C    G    TI+W K G  ++       +H      
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 67  -----SMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGL--P 118
                  +V    S    G Y C  RN + E  +    L V +      F      +   
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD--DFRQNPSDVMVA 124

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G    + C    G P  TI W KDG PL  +              L I     + +G+Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR----GGKLMITYTRKSDAGKY 180

Query: 179 TCVASNTAAQARYSS-KLQVK 198
            CV +N   +      +L V 
Sbjct: 181 VCVGTNMVGERESEVAELTVL 201

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +  + +         +  + VGE A + C   +G    TI W KDG  LD+         
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR- 163

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKI 107
                 L+I       +G Y C   NMV E  ++V  L V   P  
Sbjct: 164 ---GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 99.5 bits (248), Expect = 8e-26
 Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 18/202 (8%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQYN 66
            PP++      + + VG  AS  C+   GD P +I W K+G+ +  + +  ++       
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63

Query: 67  SMLVIDSV-SARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLP------ 118
           S+L I+ V + R    Y C   N V +       L +    K  +        P      
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G    + C    G+P   I W+K+   +    P            L I +      G+Y
Sbjct: 124 VGHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREEDQGKY 178

Query: 179 TCVASNTA--AQARYSSKLQVK 198
            CVA N+     ++ ++ L VK
Sbjct: 179 ECVAENSMGTEHSK-ATNLYVK 199

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 97.6 bits (243), Expect = 2e-25
 Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 25/191 (13%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
              +       ++   +  +L C         + +W  +   +               S 
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----------SQASS 55

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
             ID+ +   SG Y C        D    +L V++   +     P     E     + C 
Sbjct: 56  YFIDAATVNDSGEYRCQTNLSTLSDPV--QLEVHIGWLL--LQAPRWVFKEEDPIHLRCH 111

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
                    + +L++GK                +S   I   +   SG Y C     +  
Sbjct: 112 SWKNTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYFCRGLVGSKN 162

Query: 189 ARYSS-KLQVK 198
               +  + + 
Sbjct: 163 VSSETVNITIT 173

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 96.6 bits (240), Expect = 7e-25
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 27/198 (13%)

Query: 20  TLNVGERASLICSITK--GDIPLTIKWLKDGRYLDNSAALSIT----------------H 61
           T  +GER +L     +      + + W K G   +      +                 H
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEG 120
                  LV+ + +  H GNY C ++    E T+ + L V  P  +           P+ 
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV--HSERSQFPDF 119

Query: 121 ARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSL--LSINSVSAAHSGE 177
           +   V C V    P   ++WL  +G   +P         +   SL      S+       
Sbjct: 120 SVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178

Query: 178 YTCVASNTA--AQARYSS 193
            TCV  N    A   Y S
Sbjct: 179 VTCVGKNDKEEAHGVYVS 196

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 131 HGDPPLTIRWLKDGKP------LSPRFPVNVSD----------LDSFSSLLSINSVSAAH 174
              P + + W K G              V   +            + +  L + + + +H
Sbjct: 19  SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78

Query: 175 SGEYTCVASNTAAQARYSSKLQVK 198
            G Y C       +      L V 
Sbjct: 79  DGNYLCRMKLGETEVTKQEHLSVV 102

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            P  LS  +           ++ C++        ++WL          A +   + + + 
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 68  MLVI---DSVSARHSGNYSCTVRNMVAE 92
            L +    S+        +C  +N   E
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEE 189

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 98.6 bits (245), Expect = 8e-25
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 26/192 (13%)

Query: 12  LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVI 71
           ++P  PE  LNV     L CS +       + W +  +  +    ++      ++S+L +
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSGSA-----PVVWERMSQ--EPPQEMAKAQDGTFSSVLTL 55

Query: 72  DSVSARHSGNYSCTVRNMVAEDTQVQRLI-VNVPPKIESF-----AFPFDGLPEGARTRV 125
            +++   +G Y CT  +    +T  ++ + + VP     F        F  L E     +
Sbjct: 56  TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C VT  DP L +   +    ++   P +                       Y C  +  
Sbjct: 116 PCRVT--DPQLVVTLHEKKGDVALPVPYD----------HQRGFSGIFEDRSYICKTTI- 162

Query: 186 AAQARYSSKLQV 197
             +   S    V
Sbjct: 163 GDREVDSDAYYV 174

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 89.0 bits (220), Expect = 3e-21
 Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 20/198 (10%)

Query: 8   VPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           V    +        L      ++ C +T  D  L +   +         AL + +  Q  
Sbjct: 93  VGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEK----KGDVALPVPYDHQRG 146

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDG-LPEGARTR 124
              + +        +Y C       E D+    +       I          + +G    
Sbjct: 147 FSGIFED------RSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200

Query: 125 VICGVTHGDPPLTIRWLKDGK----PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
           ++C V  G+  +   W    K     + P     +       S+L I S     SG YTC
Sbjct: 201 LMCIVI-GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTC 259

Query: 181 VASNTAAQARYSSKLQVK 198
             + +    +    + + 
Sbjct: 260 NVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 9e-14
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG----RYLDNSAA 56
            +         +S    +  +  GE  +L+C +  G+  +  +W        R ++    
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GNEVVNFEWTYPRKESGRLVEPVTD 231

Query: 57  LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
             +       S+L I S     SG Y+C V   V +    + + + V
Sbjct: 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 95.3 bits (237), Expect = 2e-24
 Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 25/191 (13%)

Query: 10  PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
             +        +   +  +L C         + +W  +   + +             S  
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-----------ASSY 56

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
            ID+ +   SG Y C  +     D    +L V++   +     P     E     + C  
Sbjct: 57  FIDAATVDDSGEYRCQTQLSTLSDPV--QLEVHIGWLL--LQAPRWVFKEEDPIHLRCHS 112

Query: 130 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
                   + +L++GK                +S   I   +   SG Y C     +   
Sbjct: 113 WKNTALHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKDSGSYFCRGLVGSKNV 163

Query: 190 RYSS-KLQVKG 199
              + ++ +  
Sbjct: 164 SSETVQITITQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           +        L    P       +   L C   K      + +L++G+             
Sbjct: 84  LEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------- 133

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKI 107
             +NS   I   + + SG+Y C         + +  ++ +     +
Sbjct: 134 -HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 94.6 bits (235), Expect = 3e-24
 Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%)

Query: 8   VPPK--LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           VP K  +S   P   +  GE  +L C+        + KW  +G   + +           
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------- 49

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
           NS L I +     SG Y C  + +   +     + + V           + + EG    +
Sbjct: 50  NSSLNIVNAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQASAEVVMEGQPLFL 105

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C          + + KDG+ L   +          +  +SI + +   SG Y C     
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVW 156

Query: 186 AAQARYSS-KLQVK 198
                     + V 
Sbjct: 157 QLDYESEPLNITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
           V        L        +  G+   L C   +      + + KDG  L           
Sbjct: 79  VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------- 130

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIE 108
              N  + I + +   SG Y CT +      +++   + V   P+ +
Sbjct: 131 -YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 96.9 bits (240), Expect = 9e-24
 Identities = 41/241 (17%), Positives = 71/241 (29%), Gaps = 43/241 (17%)

Query: 2   LVIFSTVPPKLSPTNP--ERTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSA 55
           L +        SP      +         + C          +  TI W      + N  
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF- 169

Query: 56  ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFA 111
                +V      L        ++GNY+C V           T+   + V   PK     
Sbjct: 170 ----NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP- 224

Query: 112 FPFDGLPE---------GARTRVICGVTH---GDPPLTIRWLKDGKPL---------SPR 150
            P    P          G    + C V      D    + W  DGK           +  
Sbjct: 225 -PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES 283

Query: 151 FPVNVSDLDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
              + ++ ++ + +LSI  V++      Y C A +   +   ++K++ K       P YT
Sbjct: 284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV----PAPRYT 339

Query: 210 L 210
           +
Sbjct: 340 V 340

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 96.1 bits (238), Expect = 1e-23
 Identities = 35/209 (16%), Positives = 57/209 (27%), Gaps = 30/209 (14%)

Query: 23  VGERASLICSI----------TKGDIPLTIKWLKDGRYLD----NSAALSITHVDQYNSM 68
             E A + C +          T     LT+ W    +  D     +  L    + +   +
Sbjct: 21  EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG---LPEGARTRV 125
           L         +GNY+C +RN          L V       +            E    R+
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 126 ICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
            C             TI W      +     V           LS      +++G YTCV
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNGNYTCV 195

Query: 182 ASNTAAQARYSS----KLQVKGNLNRLPP 206
            +       +       ++V G+     P
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVP 224

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAA 173
           P           T     LT+ W    +      P+N    ++       +L        
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89

Query: 174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
            +G YTC+  NT   ++ +  L+V    +       L   +
Sbjct: 90  DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 95.6 bits (237), Expect = 2e-23
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)

Query: 10  PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
           P L    P  +++VG+   L C +  G       W+        +   S         + 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKSGGLPS--LGLT 215

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
           + +  S  +  N +C   N V       ++ V+ P      +       E     +   V
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP-----ASVQLHTAVEMHHWCIPFSV 270

Query: 130 THGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
             G P  ++RWL +G  L+        F    ++       L +N  +  ++G YT +A+
Sbjct: 271 -DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329

Query: 184 NTAAQARYSSKLQVK 198
           N   QA  S      
Sbjct: 330 NPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY- 65
            V      +    T        +  S+     P +++WL +G  L+ ++ +    ++   
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAA 302

Query: 66  -----NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
                +  L ++  +  ++GNY+    N   + +          P
Sbjct: 303 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 93.4 bits (231), Expect = 4e-22
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           + I+S   P +  T PE  ++ G   ++ C        +T+  +        +       
Sbjct: 278 VTIYSFPAPNVILTKPE--VSEGTEVTVKCE-AHPRAKVTLNGVPAQPLGPRA------- 327

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAFPFDG- 116
                  L++ +    +  ++SC+    VA       Q + L V   P+++    P +  
Sbjct: 328 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 381

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
            PE ++   +C    G+P   ++ LKDG    P              +    +V+    G
Sbjct: 382 WPENSQQTPMCQAW-GNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEG 426

Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
            Y C A +T  +      + V  
Sbjct: 427 TYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 80.7 bits (198), Expect = 1e-17
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 22/210 (10%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALSIT 60
           +     P ++          VG+  +L C +  G     LT+  L+  + L    A+   
Sbjct: 80  LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-- 137

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED--------TQVQRLIVNVPPKIESFAF 112
             +       +      H  N+SC     +           +   +L   V P       
Sbjct: 138 --EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195

Query: 113 PFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 170
               L    +  V+C +    P     +      + L+P     V+  +   S  +  SV
Sbjct: 196 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSV 251

Query: 171 SAAHSGEY--TCVASNTAAQARYSSKLQVK 198
           +A   G    TC              + + 
Sbjct: 252 TAEDEGTQRLTCAVILGNQSQETLQTVTIY 281

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 76.1 bits (186), Expect = 4e-16
 Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 17/175 (9%)

Query: 12  LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVI 71
           +SP+     L  G    + CS T  D P+ +           +       +   N+  V 
Sbjct: 4   VSPSKV--ILPRGGSVLVTCS-TSCDQPMLLGI--------ETPLPKKELLLPGNNRKVY 52

Query: 72  DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
           +  + +      C       + T    L V   P+    A      P G    + C V  
Sbjct: 53  ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112

Query: 132 GDPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
           G P   LT+  L+  K L        +  +      ++      H   ++C    
Sbjct: 113 GAPRANLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 73.4 bits (179), Expect = 3e-15
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 24/204 (11%)

Query: 8   VPPKLSPTNP-ERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALSITHVDQ 64
           V P   P     R L V  + +++CS+          +      + L+     ++T+ + 
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN----PTVTYGND 241

Query: 65  YNSMLVIDSVSARHSGNY--SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
             S     SV+A   G    +C V         +Q + +   P           + EG  
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTE 300

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             V C   H    +T+  +                     + L + +    +   ++C A
Sbjct: 301 VTVKCEA-HPRAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSA 346

Query: 183 SNTAAQARYSSKLQVKGNLNRLPP 206
           +   A          +  +   P 
Sbjct: 347 TLEVAGQLIHKNQTRELRVLYGPR 370

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 7   TVPPKLSPTNPER--TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
              P+L   +     T     + + +C    G+    +K LKDG                
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQ-AWGNPLPELKCLKDG--------------TF 410

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
              +    +V+    G Y C  R+   E T+   + V  P
Sbjct: 411 PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 42/201 (20%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRY----------------LDNSAALSITHVDQYN 66
            G+   L C+ ++        W    +                 L++ A    +  DQ N
Sbjct: 9   KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
             L+I ++    S  Y C V +   E  Q+    +               L +G    + 
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH--------LLQGQSLTLT 118

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
                     +++                         LS++ +    SG +TC      
Sbjct: 119 LESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTCTVLQNQ 166

Query: 187 AQARYSSKLQVKGNLNRLPPS 207
            +  +   + V         +
Sbjct: 167 KKVEFKIDIVVLA----FQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 12/94 (12%)

Query: 14  PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
             N +  L  G+  +L           +++                         L +  
Sbjct: 102 TANSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQ 149

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
           +  + SG ++CTV     +      ++V    K 
Sbjct: 150 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 89.1 bits (220), Expect = 6e-22
 Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 12/189 (6%)

Query: 11  KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV 70
           + +P +      +G+  SL CS T  + P    W        N    +    +   S L 
Sbjct: 4   ETTPESRY-LAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKVTN----EGTTSTLT 57

Query: 71  IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
           ++ VS  +  +Y CT      +  +  ++ +   PK          L  G    V C V 
Sbjct: 58  MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVA 116

Query: 131 HGDPP--LTIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
              P   L I  LK    +  +      +   L++ S  ++   V         C A   
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 176

Query: 186 AAQARYSSK 194
             +      
Sbjct: 177 IDEMDSVPT 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
             G    + C  T G       W      PL+ +     +      S L++N VS  +  
Sbjct: 14  QIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGTT-----STLTMNPVSFGNEH 67

Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
            Y C A+  + +     ++++  
Sbjct: 68  SYLCTATCESRKLEKGIQVEIYS 90

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 91.8 bits (227), Expect = 6e-22
 Identities = 27/205 (13%), Positives = 53/205 (25%), Gaps = 38/205 (18%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRY----------------LDNSAALSITHVDQYN 66
            G+   L C+ ++        W    +                 L++ A    +  DQ N
Sbjct: 8   KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
             L+I ++    S  Y C V +   E  Q+    +               L +G    + 
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH--------LLQGQSLTLT 117

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
                     +++                         LS++ +    SG +TC      
Sbjct: 118 LESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTCTVLQNQ 165

Query: 187 AQARYSSKLQVKGNLNRLPPSYTLV 211
            +  +   + V          Y   
Sbjct: 166 KKVEFKIDIVVLAFQKASSIVYKKE 190

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 85.6 bits (211), Expect = 1e-19
 Identities = 24/203 (11%), Positives = 46/203 (22%), Gaps = 31/203 (15%)

Query: 14  PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
             N +  L  G+  +L           +++                         L +  
Sbjct: 101 TANSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQ 148

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGD 133
           +  + SG ++CTV     +      ++V    K  S  +  +G        +   V    
Sbjct: 149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLT 208

Query: 134 PPLTIRWLKDGKPLSP-------------------RFPVNVSDLDSFSSLLSINSVSAAH 174
               + W  +    S                       + +         L       A 
Sbjct: 209 GSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG 268

Query: 175 SGEYTCVASNTAAQARYSSKLQV 197
           SG  T        +      L V
Sbjct: 269 SGNLTLALEAKTGKLHQEVNLVV 291

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 62.9 bits (152), Expect = 9e-12
 Identities = 22/183 (12%), Positives = 44/183 (24%), Gaps = 34/183 (18%)

Query: 22  NVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVDQYNSM---LVIDSVS 75
            +     L     +       +T         +          + +   +   L      
Sbjct: 206 KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ 265

Query: 76  ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH-GDP 134
              SGN +  +     +  Q   L+V                    +  + C V     P
Sbjct: 266 YAGSGNLTLALEAKTGKLHQEVNLVVMRAT--------------QLQKNLTCEVWGPTSP 311

Query: 135 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
            L +    + K                S       V    +G + C+ S+ + Q    S 
Sbjct: 312 KLMLSLKLENKEAKV------------SKREKAVWVLNPEAGMWQCLLSD-SGQVLLESN 358

Query: 195 LQV 197
           ++V
Sbjct: 359 IKV 361

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 89.1 bits (220), Expect = 8e-22
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 14/202 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                      T N  +   + C  +  ++ +++      +              +    
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK---G 65

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF---PFDGLPEGARTRV 125
             I S    ++G   C  +        +  ++V V  +I            L  G +  +
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125

Query: 126 ICGVTHG-DPPLTIRWLKDGKPLSPRFPVN-------VSDLDSFSSLLSINSVSAAHSGE 177
            C      +  +   W         +  VN        S++  F S L+I+ V+ +  G 
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185

Query: 178 YTCVASNTAAQARYSSKLQVKG 199
           YTC AS+     + S+ ++V  
Sbjct: 186 YTCAASSGLMTKKNSTFVRVHE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 65.2 bits (158), Expect = 5e-13
 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 1   MLVIFSTVPPKLSPTNPERT-LNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAAL- 57
           ++V+       +  +      L+VGE+  L C+   + ++ +   W        +   + 
Sbjct: 96  IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN 155

Query: 58  ------SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
                 S + + ++ S L ID V+    G Y+C   + +        + V+  P
Sbjct: 156 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 3/96 (3%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
           +    +     +    +     + C  +  +  +++      K   P       D     
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
              +I S   +++G   C A       +    + V 
Sbjct: 66  --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           + I+S   P +  T PE  ++ G   ++ C        +T+  +        +       
Sbjct: 93  VTIYSFPAPNVILTKPE--VSEGTEVTVKCE-AHPRAKVTLNGVPAQPLGPRA------- 142

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAFPFDG- 116
                  L++ +    +  ++SC+    VA       Q + L V   P+++    P +  
Sbjct: 143 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
            PE ++   +C    G+P   ++ LKDG    P              +    +V+    G
Sbjct: 197 WPENSQQTPMC-QAWGNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEG 241

Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
            Y C A +T  +      + V  
Sbjct: 242 TYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 69.3 bits (169), Expect = 3e-14
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 29/196 (14%)

Query: 12  LSPTNPE----RTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVDQ 64
           L  T P+    R L V  + +++CS+  G  P     +      + L+ +    +T+ + 
Sbjct: 2   LPATPPQLVSPRVLEVDTQGTVVCSLD-GLFPVSEAQVHLALGDQRLNPT----VTYGND 56

Query: 65  YNSMLVIDSVSARHSG--NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
             S     SV+A   G    +C V         +Q + +   P         + + EG  
Sbjct: 57  SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE-VSEGTE 115

Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             V C   H    +T+  +                     + L + +    +   ++C A
Sbjct: 116 VTVKCEA-HPRAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSA 161

Query: 183 SNTAAQARYSSKLQVK 198
           +   A          +
Sbjct: 162 TLEVAGQLIHKNQTRE 177

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 17/100 (17%)

Query: 7   TVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
              P+L         T     + + +C    G+    +K LKDG +              
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQ-AWGNPLPELKCLKDGTFPLPI---------- 229

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
                   +V+    G Y C  R+   E T+   + V  P
Sbjct: 230 ----GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 83.3 bits (206), Expect = 7e-21
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVS 156
           V+  P I     P           +   V  G+P   ++W  +G  L+        ++V+
Sbjct: 1   VHFAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           +   +   L +++ +  ++G+YT +A N   +          G
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI----THV 62
              P ++               +  ++  G+    ++W  +G  L+ S  +      T+ 
Sbjct: 2   HFAPTITFLESPT---SDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
            +Y+  L +D+ +  ++G+Y+   +N   +D +         P I+
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 85.9 bits (212), Expect = 1e-20
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 21/191 (10%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---------------NS 67
                 L+       +     W K      +                           N 
Sbjct: 13  EDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
            L+   ++ +  G Y+  + +     TQ         P  + F    +   +   + V  
Sbjct: 72  SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS-VTL 130

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
                D    I+WL + + L     + +S     +S+L I+ +    +GEY C  SN  +
Sbjct: 131 TCLSNDIGANIQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEYQCEISNPVS 187

Query: 188 QAR-YSSKLQV 197
             R  S KL +
Sbjct: 188 VRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 65.5 bits (159), Expect = 4e-13
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
                    +        T+   +  +L C     DI   I+WL + + L  +  ++++ 
Sbjct: 103 RFHVHQPVTQPFLQVTNTTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLS- 159

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPP 105
             Q NS+L ID +    +G Y C + N V    +   +L +   P
Sbjct: 160 --QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 86.1 bits (212), Expect = 3e-20
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 50/238 (21%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSI--TKGDIPLTIKWLKDGRYLDNSAALSI---- 59
           S   P L+ ++P+  ++VGE   + C +  T+      + WL      D S  +      
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 60  ---------------THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
                                +  L++  V     G Y+C +R         + + + V 
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPV--------- 153
           P+          +  G  T++ C +   +      + W+      +    V         
Sbjct: 122 PEEPRDLR----VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177

Query: 154 --------------NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
                            D+      + + +V  +  G YTC       ++R +  L V
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 25/119 (21%)

Query: 12  LSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDG----------RYLDNSAALSI 59
           L     +  + VG+   + CSI   +      + W+              Y  N  +   
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 60  THVDQY-------------NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
             + ++             +  + + +V     G Y+C++     E  +   L V    
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 78.7 bits (194), Expect = 6e-19
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 98  RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV 155
            L V  PP++ S        PE      I  V  G+PP T+ WL +G+PL  S    V  
Sbjct: 2   ALTVYYPPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56

Query: 156 -SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
             + +     L  N  +  ++G YT +A N    A  +     
Sbjct: 57  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.9 bits (166), Expect = 6e-15
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 8   VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---VD 63
            PP+ +S   PE  L       +   +  G+ P T+ WL +G+ L  S  + + +    +
Sbjct: 7   YPPRVVSLEEPELRLE----HCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP 113
                L+ +  +  ++GNY+   +N +    Q         P       P
Sbjct: 62  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 82.6 bits (203), Expect = 7e-19
 Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 35/202 (17%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGD---IPLTIKWLKDGRYLDNSAALSITHVDQ 64
           +   +S  + +R    G+  +L  ++   +     LT  W KD +  +N+          
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN---------- 50

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGL-PEGAR 122
             + L +   ++ ++G+Y  TV++       + +  ++     I +   P          
Sbjct: 51  -TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109

Query: 123 TRVICGVTH--GDPP-----LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
             +   V    G  P     L   W K    +              +  ++I   +A  +
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDT------------TQDITIQEFTADKN 157

Query: 176 GEYTCVASNTAAQARYSSKLQV 197
           G YT      +  +  S+  ++
Sbjct: 158 GVYTVKVWGESEDSAASASTKI 179

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 70.6 bits (172), Expect = 1e-14
 Identities = 25/213 (11%), Positives = 56/213 (26%), Gaps = 36/213 (16%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSIT-------KGDIPLTIKWLKDGRYLDNS 54
            ++                ++      L  ++          +  L   W K    +D +
Sbjct: 85  FLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT 144

Query: 55  AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPF 114
             ++I               +A  +G Y+  V     +        + +           
Sbjct: 145 QDITIQ------------EFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVE 192

Query: 115 DG-LPEGARTRVICGVTH-------GDPPLTIRW----LKDGKPLSPRFPVNVSDLDSFS 162
              +  G    +   V+        G P LTI++     ++G+         V +     
Sbjct: 193 SKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGF 252

Query: 163 SL-----LSINSVSAAHSGEYTCVASNTAAQAR 190
           S+     L   S +   + ++ CVA        
Sbjct: 253 SITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EG   + +C + + D    + W    + L  S ++   ++  D  + L  +  ++    
Sbjct: 14  EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY--EITYEDGVAILY-VKDITKLDD 70

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G Y C   N   +    ++L VKG
Sbjct: 71  GTYRCKVVNDYGEDSSYAELFVKG 94

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
                G     +C I   D    + W    R L+NS    IT+ D     L +  ++   
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI-LYVKDITKLD 69

Query: 79  SGNYSCTVRNMVAEDTQVQRLIV 101
            G Y C V N   ED+    L V
Sbjct: 70  DGTYRCKVVNDYGEDSSYAELFV 92

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIR 139
             Y+     +V   + +    +  P  + +         EG +  + C V    P  TI 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAVYT--------WEGNQVNITCEVF-AYPSATIS 51

Query: 140 WLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
           W +DG+ L      N+       +S L +   S    G Y C A N   Q      L   
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

Query: 199 G 199
            
Sbjct: 112 D 112

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYN 66
             PKL           G + ++ C +       TI W +DG+ L +S   +I  +     
Sbjct: 18  YAPKLQG-PVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           S L +   S    GNY+CT  N + +++    L+    P
Sbjct: 76  SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 99  LIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV 155
           ++  V P I       +     G    V C  + G+PP  I W KD + L          
Sbjct: 5   VLERVAPTITGN--LENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGI---- 57

Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
             L   +  L+I  V     G YTC A +    A+  +   ++G
Sbjct: 58  -VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           L +   V P ++     +T ++GE   + C+ + G+ P  I W KD   L   + + +  
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK- 60

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
               N  L I  V     G Y+C   +++         I+    +  + 
Sbjct: 61  --DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 78.0 bits (192), Expect = 5e-18
 Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 36/191 (18%)

Query: 23  VGERASLICSITKGDIPL-TIKWLKDGRYL-------DNSAALSITHVDQY-NSMLVIDS 73
           +G+  +L     +    +  IKW K            +            + N  L I  
Sbjct: 13  LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFPFDGLPEGARTRVICG 128
           +       Y  ++ +   ++   +   + +      PKI               T + C 
Sbjct: 73  LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW---------TCINTTLTCE 123

Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
           V +G  P  +   +DGK L              S  +  +  + + S ++ C A N  ++
Sbjct: 124 VMNGTDP-ELNLYQDGKHLKL------------SQRVITHKWTTSLSAKFKCTAGNKVSK 170

Query: 189 ARYSSKLQVKG 199
                 +    
Sbjct: 171 ESSVEPVSCPE 181

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 75.4 bits (186), Expect = 6e-18
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EG   R+   V+ G P   + W  +G+ +       + VS+    S  L    V A+ +
Sbjct: 18  DEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS--LIFEVVRASDA 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G Y CVA N A +A ++ +L V  
Sbjct: 75  GAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 6   STVPPK--LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           +  PP+    P N   +++ G    +   ++ G     + W  +GR + +     +   +
Sbjct: 2   AMGPPRFIQVPEN--MSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSE 58

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           +    L+ + V A  +G Y+C  +N   E T   +L V
Sbjct: 59  KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 76.1 bits (187), Expect = 6e-18
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 98  RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPV 153
            L VN PP I S          G + ++ C +    PP  I W      L      R+ V
Sbjct: 8   TLTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTV 65

Query: 154 NVSDL-DSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
                 +   S L+I+++  A     Y C A N+        +L+ +G+    P S
Sbjct: 66  ETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHV 62
            PP +S T  +     GE+  + C I     P  I W      L++         +I+  
Sbjct: 13  GPPIISSTQTQHA-LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71

Query: 63  DQYNSMLVIDSVSARH-SGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           +   S L I ++        Y+CT  N    DT++ RL      
Sbjct: 72  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 76.8 bits (189), Expect = 8e-18
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVIC 127
              S S+  S   +  V N  A   +V     +V P    F      +   EG+  R  C
Sbjct: 7   RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPY---FTKTILDMEVVEGSAARFDC 63

Query: 128 GVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            V  G P   + W KD  P+  S  F ++  +  + S  L+I+ V      +YTC A N+
Sbjct: 64  KVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS--LTISEVCGDDDAKYTCKAVNS 120

Query: 186 AAQARYSSKLQVKG 199
             +A  +++L V+ 
Sbjct: 121 LGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
             +  G  A   C +  G     + W KD   +  S    I + ++ N  L I  V    
Sbjct: 51  MEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109

Query: 79  SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFA 111
              Y+C   N + E T    L+V    K     
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETMGKEGEGE 142

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 93  DTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP- 149
              V    +  PPKI              G +  ++     G P   + W K G PL   
Sbjct: 10  AQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTS 68

Query: 150 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
           R  V  SD   F ++  +   + + SGEY         +   + +++V
Sbjct: 69  RVHVRTSD---FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.5 bits (160), Expect = 5e-14
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 7   TVPPKLS-PTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
             PPK+  P +  +T     GE+ +L+     G     + W K G  LD S    +   D
Sbjct: 19  AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTSRV-HVRTSD 76

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
             +++  +   +   SG Y  +V+    +DT   R+ V    
Sbjct: 77  F-DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 38/231 (16%), Positives = 69/231 (29%), Gaps = 42/231 (18%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR----------------- 49
           +VPP +        +  G+   L C+ T       ++W    R                 
Sbjct: 5   SVPPLV-------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSEL 57

Query: 50  --YLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQRLIVNVPPK 106
              + ++   S  +       LV+         +Y C VR   A       RL V   P+
Sbjct: 58  QVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE 117

Query: 107 ---IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------ 157
              +         + + A+    C   +G+P   I W ++G+ L     +N         
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177

Query: 158 ------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN 202
                 L S +S L +          + C A  +  + R+        +L 
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 127 CGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           C          +  ++             S R  +    L    +L  I SV    SG+Y
Sbjct: 24  CDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQY 82

Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
            C+    AA       ++VK +  R+      V
Sbjct: 83  RCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 77.2 bits (189), Expect = 2e-17
 Identities = 30/193 (15%), Positives = 45/193 (23%), Gaps = 42/193 (21%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
                L C          I W KDG+         I  + +      + S +    G Y 
Sbjct: 18  DGSVLLTC----DAEAKNITWFKDGK--------MIGFLTEDKKKWNLGSNAKDPRGMYQ 65

Query: 84  CTVRNMVAEDTQV------------QRLIVNVPPKIESFAFPFDGLPE------------ 119
           C      ++  QV                 +   K ++     DG  E            
Sbjct: 66  CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVS 125

Query: 120 --GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             G    + C      P   I W  + K +           D    L          SG 
Sbjct: 126 ISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGY 181

Query: 178 YTCVASNTAAQAR 190
           Y C    +  +  
Sbjct: 182 YVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 17/115 (14%)

Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 174
               E     + C          I W KDGK +          L       ++ S +   
Sbjct: 13  YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGF--------LTEDKKKWNLGSNAKDP 60

Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDS 229
            G Y C  S        S  LQV   +     +      +             D 
Sbjct: 61  RGMYQCKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDG 110

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
           P     +  C    G+P  T+RWLK+GK       +    + +    L + SV  +  G 
Sbjct: 21  PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79

Query: 178 YTCVASNTAAQARYSSKLQV 197
           YTCV  N      ++  L V
Sbjct: 80  YTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           T   K+        +         C    G+   T++WLK+G+       +    V   +
Sbjct: 8   TNTEKMEKRL--HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
             L+++SV     GNY+C V N          L V
Sbjct: 65  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 73.5 bits (181), Expect = 3e-17
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 157
           ++  P I +     D  +   +  +     T G+P  T  W KDGK +    ++ +   D
Sbjct: 3   ISSKPVIVTG--LQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKL-SED 58

Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
              F   L I+    + SG YTC   N+A     S KL +K 
Sbjct: 59  KGGFF--LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           +  P +     + T++    A      T G+   T  W KDG+ +       ++  D+  
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSE-DKGG 61

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
             L I       SG Y+CTV+N     +   +L +
Sbjct: 62  FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 73.1 bits (180), Expect = 4e-17
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EG    +   V  G+P   + WL++ +P+    R     ++       L I +     +
Sbjct: 18  REGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR--LRILAAERGDA 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G YTC A N     +  ++L+V+G
Sbjct: 75  GFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 6   STVPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           S  PP       +  +++  G+   +   +  G+    + WL++ + +           +
Sbjct: 2   SKAPPTFKVSLMD--QSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAE 58

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
                L I +     +G Y+C   N         RL V
Sbjct: 59  GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.2 bits (180), Expect = 5e-17
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            EG   R+ C V+ G P   + W  DGKP+ P     +   ++    L I  V++  +G 
Sbjct: 22  QEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           YTC+A+N A Q  +S +L V       P S
Sbjct: 81  YTCIATNRAGQNSFSLELVVAAK-ESGPSS 109

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 6   STVPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           S   P     P +   T+  G+   + C ++ G     + W  DG+ +   +A  +   +
Sbjct: 6   SGFRPHFLQAPGD--LTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRE 62

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
                L+I+ V++R +G Y+C   N   +++    L+V       S
Sbjct: 63  NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.5 bits (181), Expect = 5e-17
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
            +  P++     ++ +  GE   L   +T G  P+T  W+K  + +  S  + + + +  
Sbjct: 4   GSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSE-N 61

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            S L I +    H G Y+  V N +        L V   P
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.1 bits (180), Expect = 6e-17
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G    +   VT G  P+T  W+K  K +     + V + ++ S L  I +    H G Y
Sbjct: 21  AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKLT-ILAARQEHCGCY 78

Query: 179 TCVASNTAAQARYSSKLQVKG 199
           T +  N     +    L V  
Sbjct: 79  TLLVENKLGSRQAQVNLTVVD 99

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 157
             +  +I +   P    + EG   R  C    G+P  T+ WL+ G+ L  S R  V  + 
Sbjct: 11  TTLAARILTK--PRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTK 67

Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
             S      I+SV A+  G Y+ V  N+  +      L ++
Sbjct: 68  YKS---TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           +T+  ++       T+  GE A   C    G+   T+ WL+ G+ L  SA   +T   +Y
Sbjct: 11  TTLAARILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVT-TTKY 68

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            S   I SV A   GNYS  V N   +      L +
Sbjct: 69  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDS 160
           + PKI + +     +  G    +      G P  T  W         +P   V+      
Sbjct: 1   LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS--- 55

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
            ++ +   S   A SG Y     N   +     ++ V+
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           + PK+   + +  +  G   +L      G    T  W         +  L +       +
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS-STT 58

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            +   S     SGNY   V+N + ED  +  +IV
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 74.6 bits (182), Expect = 3e-16
 Identities = 34/243 (13%), Positives = 55/243 (22%), Gaps = 63/243 (25%)

Query: 15  TNPERTLNVGERASLICSIT--KGDIPLTIKWLKD-----------GRYLDNSAALSITH 61
           T+ E  ++ G    L CS        P  I WLK            G Y      L    
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 62  VDQYNSM-----------------LVIDSVSARHSGNYSCTVRNM-------VAEDTQVQ 97
            D Y                    L +  V  +  G Y C V          +   + V 
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127

Query: 98  RLIVNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------- 147
           ++  + P      +      + EG    + C          + W                
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANANVTWYTGPTFFENYETGTYQ 186

Query: 148 -------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
                        S       S   + +  L I +     +G   C  +    +      
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARN--LVIRAAKITDAGRVWCELATGQGELDADRS 244

Query: 195 LQV 197
             +
Sbjct: 245 STI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 21/113 (18%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                 T     ++ G   ++ C  T       + W     + +N    +   +   N  
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 69  --------------------LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
                               LVI +     +G   C +     E    +   +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            +G+       V  G P     W K+G  +  S R      + +     L I  V+   S
Sbjct: 18  GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE--LVIRDVTGEDS 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
                 A N A +    + L V+ 
Sbjct: 75  ASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
           +T+  G  A     +  G      +W K+G  ++ S  +     +     LVI  V+   
Sbjct: 15  QTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGED 73

Query: 79  SGNYSCTVRNMVAEDTQVQRLIV 101
           S +      N+  E +    L+V
Sbjct: 74  SASIMVKAINIAGETSSHAFLLV 96

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 70.5 bits (173), Expect = 4e-16
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAH 174
           +  G   ++ C +   D   +I WL+DG  L+   R  +           + +     A 
Sbjct: 15  VHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRIT-------GEEVEVQDSVPAD 65

Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           SG Y CV S+ +        + V   L   P S
Sbjct: 66  SGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                       ++ G+   L C +   D   +I WL+DG  L  S    IT        
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLAESNRTRIT-----GEE 55

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
           + +       SG Y+C   +    DT      VNV   + S
Sbjct: 56  VEVQDSVPADSGLYACVTSSPSGSDT--TYFSVNVSDALPS 94

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 71.1 bits (174), Expect = 5e-16
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSD 157
            P                    I     G P  ++RWL +G  L+        F    ++
Sbjct: 3   MPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57

Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
                  L +N  +  ++G YT +A+N   QA  S       N     P
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 41  TIKWLKDGRYLDNSAALSITHVDQ------YNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
           +++WL +G  L+ ++ +    ++        +  L ++  +  ++GNY+    N   + +
Sbjct: 31  SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90

Query: 95  QVQRLIVNVPPKIESFAFP 113
                     P   +   P
Sbjct: 91  ASIMAAFMDNPFEFNPEDP 109

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EG      C V  G+P   I W KDGK +           DLD   SL    + +    
Sbjct: 21  FEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH-TTASTLDDD 78

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           G YT +A+N   +   + +L V+  +N  P S
Sbjct: 79  GNYTIMAANPQGRISCTGRLMVQA-VNSGPSS 109

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQYNSMLVIDSVSAR 77
             +  G   +  C +  G+    I W KDG+ +   +   +I         L   + +  
Sbjct: 18  YKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD 76

Query: 78  HSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
             GNY+    N     +   RL+V    
Sbjct: 77  DDGNYTIMAANPQGRISCTGRLMVQAVN 104

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 69.7 bits (171), Expect = 7e-16
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             G    + C V    P   I W+KDG PL              S +L +  +     G 
Sbjct: 23  APGGTVTLTCEVP-AQPSPQIHWMKDGVPLPL----------PPSPVLILPEIGPQDQGT 71

Query: 178 YTCVASNTAAQARYSSKLQV 197
           Y+CVA++++   + S  + +
Sbjct: 72  YSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
             +L        +  G   +L C +        I W+KDG  L              + +
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPP----------SPV 58

Query: 69  LVIDSVSARHSGNYSCTVRNMV--AEDTQVQRLIVNVP 104
           L++  +  +  G YSC   +     ++++   + +  P
Sbjct: 59  LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
           P G  TR I  V    P   ++W  +G  L  S +   + ++     +L  I       S
Sbjct: 21  PCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKI--HYTNTSGVLTLE-ILDCHTDDS 76

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G Y  V +N   +A   + L V G
Sbjct: 77  GTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
             +  G+    I ++        +KW  +G  L  S+ +  T+       L I       
Sbjct: 18  HRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTN-TSGVLTLEILDCHTDD 75

Query: 79  SGNYSCTVRNMVAEDTQVQRLIV 101
           SG Y     N   E +    L V
Sbjct: 76  SGTYRAVCTNYKGEASDYATLDV 98

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 72.0 bits (176), Expect = 2e-15
 Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 28/208 (13%)

Query: 23  VGERASLICSITKG----DIPLTIKWLKDGRYL-----------------DNSAALSITH 61
            G   ++ C            L + W  + + +                    A L    
Sbjct: 15  YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEG 120
           +   N+ L I  V  + +G Y C +          +R+ V V               P  
Sbjct: 75  LSLGNAALQITDVKLQDAGVYRCMISY---GGADYKRITVKVNAPYNKINQRILVVDPVT 131

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           +   + C    G P   + W      +        N    +   ++ S   ++   +  +
Sbjct: 132 SEHELTC-QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIF 190

Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPP 206
            C       +  ++++L +       PP
Sbjct: 191 YCTFRRLDPEENHTAELVIPELPLAHPP 218

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 3/102 (2%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSIT-HVDQYN 66
           P             V     L C    G     + W   D + L      + +   ++  
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
           ++     ++   +  + CT R +  E+     L++   P   
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAH 216

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFS 162
           P  +         +  GA    IC      P  T+ W +     L  R           +
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-------N 61

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
            +L+I +V  + +G Y C  SN  A  + ++ L V+
Sbjct: 62  GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 9   PPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           P  ++       ++  G   + IC+        T+ W +             +    +N 
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN------GKLPSRAMDFNG 62

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
           +L I +V    +G Y CT  NM A D     L V V
Sbjct: 63  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAH 174
            EG   ++ C ++   PP  + W ++ + +     R  +   +    +  L I  V+   
Sbjct: 28  LEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT--LLIKDVNKKD 84

Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
           +G YT  A N A     +++L V        P+ TL
Sbjct: 85  AGWYTVSAVNEAGVTTCNTRLDVTA-----RPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 8   VPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQ 64
             P     P +  + +  G+   L C I+    P  + W ++   +  +   +S+   + 
Sbjct: 14  RAPMFIYKPQS--KKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
               L+I  V+ + +G Y+ +  N     T   RL V   P  
Sbjct: 71  GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 56/210 (26%)

Query: 14  PTNPERTLNV-GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
             N E  +++ G    L C +   +    +KW K+G+ L             ++  LV+ 
Sbjct: 3   AENIEYKVSISGTSVELTCPLDSDE---NLKWEKNGQELPQK----------HDKHLVLQ 49

Query: 73  SVS-ARHSGNYSCTVRNMVAEDTQVQRLIV------------------------NVPPKI 107
             S    SG Y C             +  V                              
Sbjct: 50  DFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109

Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 167
                  DG        + CG+       TI+WLKDG  +SP        L++  +  ++
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISP--------LNATKNTWNL 157

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            + +    G Y C  +        S+ LQV
Sbjct: 158 GNNAKDPRGTYQCQGAK-----ETSNPLQV 182

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
             K                 L C +T      TIKWLKDG          I+ ++   + 
Sbjct: 107 TNKAKNLVQVDGSRGDGSVLLTCGLTD----KTIKWLKDGS--------IISPLNATKNT 154

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQV 96
             + + +    G Y C      +   QV
Sbjct: 155 WNLGNNAKDPRGTYQCQGAKETSNPLQV 182

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 175
           +       + C  T G P  TI W KDG  +S +   +   +    + +L I       +
Sbjct: 20  VAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDT 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G YTC+AS  + +A +S+ ++V+ 
Sbjct: 75  GRYTCIASTPSGEATWSAYIEVQE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.8 bits (158), Expect = 8e-14
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S+ PP +      +T+ V     L C  T G    TI W KDG  +      S     + 
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQD--SRIKQLE- 60

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD 115
           N +L I       +G Y+C       E T    + V           P D
Sbjct: 61  NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            EG    + C V  G P   I WL +G+P+        + +      L I        G 
Sbjct: 24  IEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVAE----LHIQDALPEDHGT 78

Query: 178 YTCVASNTAAQARYSSKLQV 197
           YTC+A N   Q   S+ + V
Sbjct: 79  YTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           V P  S    +  +  G+   L CS+  G     I WL +G+ +  +     +  +   +
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYA----RSTCEAGVA 64

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
            L I        G Y+C   N + + +    + V+
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
            +  GE  S  C ++         W   G+ + +S+    T       +LV+   +   +
Sbjct: 19  EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-QGRKYILVVREAAPSDA 77

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
           G    +VR + ++      LIV       S
Sbjct: 78  GEVVFSVRGLTSKA----SLIVRERSGPSS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            EG      C ++H        W   GK +        +       L+ +   + + +GE
Sbjct: 21  LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV-VREAAPSDAGE 79

Query: 178 YTCVASNTAAQARYSSKLQVKG 199
                    ++A     L V+ 
Sbjct: 80  VVFSVRGLTSKA----SLIVRE 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVS 156
            + PP I     P +  L       + C  T GDP   I WLK+G       PR  +   
Sbjct: 5   SSGPPIILQG--PANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATI--- 58

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
             +  +  L I ++  + +G YTCVA++++ +  +S+ L V  
Sbjct: 59  -QEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 6   STVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           S+ PP +   P N  +TL V   A L C  T GD    I WLK+G             + 
Sbjct: 5   SSGPPIILQGPAN--QTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRD--PRATIQ 59

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           +    L I ++    +G Y+C   +   E +    L V
Sbjct: 60  E-QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 70.4 bits (171), Expect = 4e-14
 Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 29/231 (12%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA----------- 56
               +  +        G   +++C   + +      W       +               
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389

Query: 57  -----LSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
                LS+          ++++ +++R +G Y C         T V+  I+   P +   
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNL--K 447

Query: 111 AFPFDGLPEGARTRVICGVTH---GDPPLTIRWLKDGKPLSPRFP------VNVSDLDSF 161
                    G   +V C              +W   G    P             D +S 
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507

Query: 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVKGNLNRLPPSYTLV 211
              L++N V+ A  G Y C           ++  + V+          +L 
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLA 558

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 28/216 (12%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL---------------DN 53
            P L       T+++G   ++ C     +        K                      
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171

Query: 54  SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP 113
              L I    Q    +VI+ +    +G Y C   +    + +   L V  P     +   
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231

Query: 114 FDGLP--------EGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFS 162
              +              + +C  +       +     GK       R  +N  D D   
Sbjct: 232 RGSVTFHCALGPEVANVAKFLCRQS-SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF 290

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
           S++ I  +    +G Y C A +       S     +
Sbjct: 291 SVV-ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQ 325

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 57.7 bits (138), Expect = 7e-10
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 33/207 (15%)

Query: 23  VGERASLIC--SITKGDIPLTIKWLKDGRYLDNSAAL--------------SITHVDQYN 66
            G   S+ C    T  +      W + G        +              ++T+  +  
Sbjct: 14  EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73

Query: 67  SMLV-IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
           + +V I  +S   SG Y C +       +    L V+  P + +    +        T +
Sbjct: 74  TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT-I 132

Query: 126 ICGVT-HGDPPLTIRWLKDGKPLSP--------------RFPVNVSDLDSFSSLLSINSV 170
            C             + + G                   R  +++         + IN +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQV 197
             + +G+Y C A + +   + ++ LQV
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQV 219

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 21/151 (13%), Positives = 35/151 (23%), Gaps = 13/151 (8%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLD------N 53
            I               T  +GE   + C              KW   G           
Sbjct: 436 EIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGP 495

Query: 54  SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAF 112
           S A      +     L ++ V+    G Y C V+            + V       S   
Sbjct: 496 SKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555

Query: 113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKD 143
               L +         +  G   +  + ++D
Sbjct: 556 S---LAKADAAPDEKVLDSGFREIENKAIQD 583

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           +  G   ++ C +   D   +I WL+DG  L       ++        + +     A SG
Sbjct: 21  VHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRITG-----EEVEVRDSIPADSG 73

Query: 177 EYTCVASNTAAQARYSSKLQV 197
            Y CV S+ +        + V
Sbjct: 74  LYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 62.5 bits (152), Expect = 4e-13
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 8   VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             P   P   E   ++ G+   L C +   D   +I WL+DG  L  S    IT      
Sbjct: 7   AQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRIT-----G 59

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
             + +       SG Y+C   +    DT    + V
Sbjct: 60  EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 66.9 bits (163), Expect = 7e-14
 Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 28/191 (14%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYL---------------DNSAALSITHVDQYNS 67
           +GE  +L      G+    I WL +   L                N       +  Q + 
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ-SY 70

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQ-VQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
            L + ++    +G+Y   +    +         I+     I+                + 
Sbjct: 71  SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C V   D  ++ RW   G  LS           S  +L        +   +YTC+A N  
Sbjct: 131 CSVEDADDNVSFRWEALGNTLS-----------SQPNLTVSWDPRISSEQDYTCIAENAV 179

Query: 187 AQARYSSKLQV 197
           +   +S   Q 
Sbjct: 180 SNLSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 2   LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
           L I   +       + +   N+     L CS+   D  ++ +W   G  L +   L+++ 
Sbjct: 102 LRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW 161

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95
             + +S             +Y+C   N V+  + 
Sbjct: 162 DPRISS-----------EQDYTCIAENAVSNLSF 184

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 31/206 (15%)

Query: 23  VGERASLICSIT--KGDIPLTIKWLKDGR------YLD-------------NSAALSITH 61
           VGE A L C +        + +KW+          Y D                ++    
Sbjct: 18  VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDG 77

Query: 62  VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED---TQVQRLIVNVPPKIESFAFPFDGLP 118
           +    + L I +V+A  SG Y C  ++    +    +++   +     ++   +   G+ 
Sbjct: 78  ITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGI- 136

Query: 119 EGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
                 + C  T   P   I+W  + G+ +       V+D     ++ +   +  +    
Sbjct: 137 -----HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNR 203
            +C   ++      ++ + +     R
Sbjct: 192 VSCTIRSSLLGLEKTASISIADPFFR 217

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            GA   + C V        + W KDGK LS    V V      +  L +     A +GEY
Sbjct: 25  AGASATLSCEVAQ--AQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEY 81

Query: 179 TCVASNTAAQARYSSKLQVKG 199
           +C A           +LQV G
Sbjct: 82  SCEAGGQQLSF----RLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 8  VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
          V  K  P + E     G  A+L C + +      + W KDG+ L +S+ + +        
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVAQAQT--EVTWYKDGKKLSSSSKVRVEA-VGCTR 66

Query: 68 MLVIDSVSARHSGNYSCTVRN 88
           LV+       +G YSC    
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGG 87

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 62.4 bits (152), Expect = 6e-13
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            +G + R+   +   D    ++WLK+G+ +       + +       L+I+  S A    
Sbjct: 29  SKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86

Query: 178 YTCVASNTAAQARYSSKLQVK 198
           Y CV             L VK
Sbjct: 87  YQCVVGGEKCSTE----LFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 9  PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                  P   ++ G +  L   +   D    +KWLK+G+ +  S +  I         
Sbjct: 16 TAFQKKLEPAYQVSKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 69 LVIDSVSARHSGNYSCTVRN 88
          L I   S      Y C V  
Sbjct: 74 LTISQCSLADDAAYQCVVGG 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
            G        ++   P +  +W   G+PL  SP   +     D    +L +++     +G
Sbjct: 19  VGETAHFEIELSE--PDVHGQWKLKGQPLAASPDCEIIE---DGKKHILILHNCQLGMTG 73

Query: 177 EYTCVASNTAAQARYSSKLQVK 198
           E +  A+NT + A     L+VK
Sbjct: 74  EVSFQAANTKSAAN----LKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
           + VGE A     +++ D+    +W   G+ L  S    I   D    +L++ +     +
Sbjct: 16 EVFVGETAHFEIELSEPDV--HGQWKLKGQPLAASPDCEIIE-DGKKHILILHNCQLGMT 72

Query: 80 GNYSCTVRN 88
          G  S    N
Sbjct: 73 GEVSFQAAN 81

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 24/182 (13%)

Query: 23  VGERASLIC-SITKGDIPLTIKWLKDGRYL------DNSAALSITHVDQYNSMLVIDSVS 75
           +G   +L   +    D    ++W +    +            S       N  L I +++
Sbjct: 10  LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69

Query: 76  ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 135
              SG Y+ TV +        + L + +   +     P     E +   + C V  G   
Sbjct: 70  RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK---PMI-YWECSNATLTCEVLEGTDV 125

Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195
             ++  +  + L                  +++         + C A N  +Q      +
Sbjct: 126 -ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172

Query: 196 QV 197
             
Sbjct: 173 NC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 126 ICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           I      D    +RW +    +         F  + +     +  L I +++   SG Y 
Sbjct: 18  IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77

Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQAS 216
               +T      +  L ++       P      S A+
Sbjct: 78  VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNAT 114

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 64.5 bits (156), Expect = 2e-12
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 23/215 (10%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQYN 66
           P ++          VG+  +L C +  G     LT+  L+  + L    A+     +   
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG----EPAE 141

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAED--------TQVQRLIVNVPPKIESFAFPFDGLP 118
               +      H  N+SC     +           +   +L   V P           L 
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 119 EGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
              +  V+C +  G  P     +      + L+P      +D  S  + +S+ +     +
Sbjct: 202 VDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSV-TAEDEGT 258

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
              TC              + +    +   P+  L
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIY---SFPAPNVIL 290

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 62.2 bits (150), Expect = 1e-11
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 15/170 (8%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
            +  L  G    + CS T  D P  +           +       +   N+  V +  + 
Sbjct: 7   SKVILPRGGSVLVTCS-TSCDQPKLLGI--------ETPLPKKELLLPGNNRKVYELSNV 57

Query: 77  RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP- 135
           +      C       + T    L V   P+    A      P G    + C V  G P  
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117

Query: 136 -LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
            LT+  L+  K L        +  +      ++      H   ++C    
Sbjct: 118 NLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           L  G+   + C    G P    +W K+  PL+               L  +  V   H G
Sbjct: 15  LMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKLYMVPYVDLEHQG 63

Query: 177 EYTCVASNTA 186
            Y C   N  
Sbjct: 64  TYWCHVYNDR 73

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
             ++      + L  G    L C    G      +W K+   L            +   +
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKL 51

Query: 69  LVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPP 105
            ++  V   H G Y C V N     D++   +I++   
Sbjct: 52  YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
               +    C V+     +T +W K+G  +  S R  ++          L I+ V     
Sbjct: 21  KAAEQAVFKCEVSD--EKVTGKWYKNGVEVRPSKRITISH---VGRFHKLVIDDVRPEDE 75

Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
           G+YT V    A     S+KL   
Sbjct: 76  GDYTFVPDGYALSL--SAKLNFL 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
           T+   E+A   C ++   +    KW K+G  +  S  ++I+H       LVID V     
Sbjct: 19  TVKAAEQAVFKCEVSDEKVT--GKWYKNGVEVRPSKRITISH-VGRFHKLVIDDVRPEDE 75

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
           G+Y+          +   +L         
Sbjct: 76  GDYTFVPDGYALSLS--AKLNFLEIKVSG 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 5   FSTVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
            S+ P  +     + +L     ER  L C +++ D P    W KDG+ ++ S  L +   
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKM- 60

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
           D     L++     + SG + C         +    + V  P    S
Sbjct: 61  DGRKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSS 103

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
              R  + C ++  D P    W KDG+ +     + V        L+ +       SGE+
Sbjct: 24  TSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKMDGRKHRLI-LPEAKVQDSGEF 80

Query: 179 TCVASNTAAQAR 190
            C     +A   
Sbjct: 81  ECRTEGVSAFFG 92

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 19/195 (9%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
                + C   +      +  +K+  Y +    L   +        VID + A  +G Y 
Sbjct: 23  DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE--FVIDHMDANKAGRYQ 80

Query: 84  CTVRNMV--AEDTQVQRLIVNVPPKIESF-AFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
           C  R        +    L+V          A     L  G    + C  +   P      
Sbjct: 81  CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS-SAHIPFDRFSL 139

Query: 141 LKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-----KL 195
            K+G+   P+            +  S+  V    SG Y C      +   +S      +L
Sbjct: 140 AKEGELSLPQHQSG-----EHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALEL 194

Query: 196 QVKGNLNRLPPSYTL 210
            V  +   +   YT 
Sbjct: 195 VVTDS---IHQDYTT 206

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
           P     A     +P     ++ C          +  +K+         +   +       
Sbjct: 8   PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE-- 65

Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
             I+ + A  +G Y C       + RYS  L++        P 
Sbjct: 66  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPF 108

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
           ++V      P LS  +    L  GE  SL CS +           K+G       +L   
Sbjct: 98  LVVTGLYGKPFLSA-DRGLVLMPGENISLTCS-SAHIPFDRFSLAKEGE-----LSLPQH 150

Query: 61  HVDQYNSMLVIDSVSARHSGNYSC 84
              ++ +   +  V    SG Y C
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYRC 174

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S+ P  +     ++ +  GE   L C +++   P  + WLKD + +  S    +   +  
Sbjct: 5   SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVC-EGT 61

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            +MLVI   S + +G Y+C V    +       L V    
Sbjct: 62  MAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKA 97

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
             G    + C ++    P  + WLKD K +  S ++ V      +    L I   S   +
Sbjct: 21  APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGASLKDA 75

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           GEYTC    + + A     L V+   +  P S
Sbjct: 76  GEYTCEVEASKSTAS----LHVEEKASG-PSS 102

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 61.2 bits (148), Expect = 4e-12
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLL 165
             G    + C    G P   I+W  +G+  +             R  ++ +     +S +
Sbjct: 34  WVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92

Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           SI+++    +G Y C ASN   +   +   +VK 
Sbjct: 93  SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 52.7 bits (126), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 17/114 (14%)

Query: 2   LVIFSTVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--- 56
           LV   +       +P +  +   VG    L C    G     I+W  +G+  ++  +   
Sbjct: 14  LVPRGSHMAGFVQAPLS--QQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLW 70

Query: 57  ---------LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
                    +  T+     S + ID++    +G Y C   N    +   +   V
Sbjct: 71  DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG+     C ++       + W  D  PL       +        +L++  ++   SG  
Sbjct: 27  EGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85

Query: 179 TCVASNTAAQARYSSKLQVKGN---LNRLPPS 207
              A +  A A     L+V       +R  PS
Sbjct: 86  YFEAGDQRASAA----LRVTEKPSVFSRSGPS 113

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
            +  G  A+  C I+  +    + W  D   L  +    I        +L +  ++ + S
Sbjct: 24  DVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDS 82

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG 116
           G       +  A       L V   P + S + P  G
Sbjct: 83  GTIYFEAGDQRAS----AALRVTEKPSVFSRSGPSSG 115

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
            G R  + C V+       ++W K+G+ +   P+    +        L+ I   + A + 
Sbjct: 21  CGERVELECEVSE--DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI-IEGATKADAA 77

Query: 177 EYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           EY+ + +   + A    KL V     +  PS
Sbjct: 78  EYSVMTTGGQSSA----KLSVDL---KSGPS 101

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVSARH 78
           T   GER  L C +++ D    +KW K+G  +           V+    +L+I+  +   
Sbjct: 18  TAYCGERVELECEVSEDDA--NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 75

Query: 79  SGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
           +  YS              +L V++     S
Sbjct: 76  AAEYSVMTTG----GQSSAKLSVDLKSGPSS 102

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            +G R R +  +   DP L ++W K+G+ + P              L  IN+       E
Sbjct: 21  DKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF-INNCQMTDDSE 77

Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           Y   A +          L V+       PS
Sbjct: 78  YYVTAGDEKCSTE----LFVRS-----GPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S+        +P   ++ G R   +  +    +   +KW K+G+ +  S      H    
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVELADPKL--EVKWYKNGQEIRPSTKYIFEH-KGC 61

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
             +L I++        Y  T  +          L V   P
Sbjct: 62  QRILFINNCQMTDDSEYYVTAGDEKCS----TELFVRSGP 97

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 35/211 (16%), Positives = 60/211 (28%), Gaps = 17/211 (8%)

Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
           ++++           +P   +  GER  L C              K+G   D S  +   
Sbjct: 110 VIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM--FEHFFLHKEGISKDPSRLVGQI 167

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR-----LIVNVPPKIESF-AFPF 114
           H     +   I  +    +G Y C                   ++V  P +  S  A P 
Sbjct: 168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG 227

Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 174
             +  G    + C              ++G     R P       +F +   +   +  H
Sbjct: 228 PKVQAGESVTLSCSSR--SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--H 283

Query: 175 SGEYTCVASNTAAQARYSSK-----LQVKGN 200
            G Y C  S   +   +S       + V GN
Sbjct: 284 GGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 33/175 (18%), Positives = 52/175 (29%), Gaps = 15/175 (8%)

Query: 24  GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
           G   +L C              K+ R       + I H   +     +  V+  H+GNY+
Sbjct: 38  GGHVTLRCHYRHR--FNNFMLYKEDRIH-----IPIFHGRIFQESFNMSPVTTAHAGNYT 90

Query: 84  CTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 137
           C   +  +          V  ++     K    A P   +  G R  + C          
Sbjct: 91  CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM--FEH 148

Query: 138 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192
               K+G    P   V         +  SI  +  A +G Y C  S T    + S
Sbjct: 149 FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 174
            G R  +   V+       + W+K+G  L+     +             L+  + V    
Sbjct: 22  VGDRVEMAVEVSE--EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI-FSDVVQED 78

Query: 175 SGEYTCVASNTAAQARYSSKLQVK 198
            G Y  + +    +A    +L V+
Sbjct: 79  RGRYQVITNGGQCEA----ELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 6  STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---V 62
          S+ P  +     ++ + VG+R  +   +++      + W+K+G  L    +    +    
Sbjct: 5  SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE--GAQVMWMKNGVELTREDSFKARYRFKK 62

Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRN 88
          D    +L+   V     G Y      
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNG 88

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 101 VNVPPKIESFAFPFDGL-PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
            + PP+I     P D +  +G    + C    G P  TI W K G+ +        S   
Sbjct: 6   EDFPPRIVEH--PSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 160 SFS--SLLSIN----SVSAAHSGEYTCVASNTAAQAR-YSSKLQVKG 199
                SL  +       S    G Y CVA N   +A  + + L+V  
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
            PP++     +  ++ GE A+L C    G    TI+W K G  ++       +H     S
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 68  ------MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIES 109
                  +V    S    G Y C  RN + E  +    L V        
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 20/213 (9%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
            P L   +P   +   E   L C     D+      L ++G++ D    +   H     +
Sbjct: 7   KPSLL-AHPGPLVKSEETVILQCW---SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKA 62

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGA 121
              I  +    +G Y C      +          +  +I  +  K    A P   +  G 
Sbjct: 63  NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGE 122

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
              + C              ++G+    RF        +F +   +   +  H G Y C 
Sbjct: 123 SVTLSCSS--RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCF 178

Query: 182 ASNTAAQARYSS-----KLQVKGNLNRLPPSYT 209
            S   +   +S+      + V GN +   PS T
Sbjct: 179 GSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPT 211

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 11  KLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN--- 66
            LSP++    L+VGE+  L C+   + ++ +   W        +   ++     Q     
Sbjct: 11  VLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69

Query: 67  ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
               S L ID V+    G Y+C   + +        + V+  P + 
Sbjct: 70  KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 95  QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPV 153
           ++  ++++    IE        L  G +  + C      +  +   W         +  V
Sbjct: 6   RIYDVVLSPSHGIE--------LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 57

Query: 154 NVSDLDS-------FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           N             F S L+I+ V+ +  G YTC AS+     + S+ ++V  
Sbjct: 58  NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
             G+              + +RW + G  +  S ++ +     +     L++  V  A  
Sbjct: 21  AAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLAT---EGTRHTLTVREVGPADQ 75

Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
           G Y  +A ++  +      L+V 
Sbjct: 76  GSYAVIAGSSKVKFD----LKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
           +  G  A       +    + ++W + G  +  S    +   +     L +  V     
Sbjct: 19 EVAAGSPAVFEAETERA--GVKVRWQRGGSDISASNKYGLAT-EGTRHTLTVREVGPADQ 75

Query: 80 GNYSCTVRN 88
          G+Y+    +
Sbjct: 76 GSYAVIAGS 84

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 26/179 (14%), Positives = 41/179 (22%), Gaps = 12/179 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P           +  G    L CS T    P            + S   + T        
Sbjct: 2   PFWADLQPRVAFVERGGSLWLNCS-TNCPRPERGGL-------ETSLRRNGTQRGLRWLA 53

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
             +  +         C  R           +     P            P G    + C 
Sbjct: 54  RQLVDIRE-PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCR 112

Query: 129 VTHGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
           V    P   LT+  L+  + L  R F              ++ +    H   ++C A  
Sbjct: 113 VPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 23  VGERASLICSITKGD---IPLTIKWLKDGRYLDNSAALSITHVDQY----------NSML 69
           V E A+L C             I W K+ + +    +  +    +Y          N  +
Sbjct: 8   VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDT---QVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
           VI ++     G Y C V     +      +  + ++V     + +     +P     R+I
Sbjct: 68  VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII 127

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINS---VSAAHSGEYTCVAS 183
           C  + G P   + WL++G+ L+        D +  + L +++S    +   +  + C+  
Sbjct: 128 CSTSGGFPEPHLSWLENGEELNAINTTVSQDPE--TELYAVSSKLDFNMTTNHSFMCLIK 185

Query: 184 NTAAQ 188
               +
Sbjct: 186 YGHLR 190

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 103 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 159
           V   I   +           R  + C +    P   +RW KDG+ +  SP   +     +
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQK---E 64

Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
                L + +V    SGEY C   + +A   
Sbjct: 65  DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 8   VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           V   +   + +  +     ER  L C + +      ++W KDG  +  S AL +   +  
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA--EVRWTKDGEEVVESPALLLQK-EDT 66

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
              LV+ +V    SG Y C + +    ++    + V  PP
Sbjct: 67  VRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPP 102

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 38/183 (20%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDG-----RYLDNSAALSI-------THVDQYNSMLV 70
            G   +L            + WL         Y  N               +D+ N  L 
Sbjct: 13  TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72

Query: 71  IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVIC 127
           I +VS    G+Y   + +   +  ++  + V      P I           E +   + C
Sbjct: 73  IYNVSKEDRGDYYMRMLHETEDQWKIT-MEVYEMVSKPMIYW---------ECSNATLTC 122

Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
            V  G     ++  +  + L                  +++         + C A N  +
Sbjct: 123 EVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRVS 169

Query: 188 QAR 190
           Q  
Sbjct: 170 QES 172

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 14  PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
            + P         A+L C + +G     +K  +   +L +    ++++            
Sbjct: 106 VSKPMIYWE-CSNATLTCEVLEGTDV-ELKLYQGKEHLRSLRQKTMSYQ----------- 152

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
                   + C   N V++++++   +VN P
Sbjct: 153 -WTNLRAPFKCKAVNRVSQESEM--EVVNCP 180

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 59.5 bits (143), Expect = 6e-11
 Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 39/206 (18%)

Query: 23  VGERASLICSIT------KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM-------- 68
            G    + CS +          PL + W +DG     +  ++  + D+            
Sbjct: 14  EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73

Query: 69  ----------LVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDG 116
                     L I       +G+Y   V          Q  +L + V   IE     F  
Sbjct: 74  LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133

Query: 117 -LPEGARTRVICGVTH---GDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVS 171
            L  G  TR+ C +       PPLT  W  +   PL P            SS L++    
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--------SSELTLTPRP 185

Query: 172 AAHSGEYTCVASNTAAQARYSSKLQV 197
             H    TC      AQ      +Q+
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQL 211

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 1   MLVIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAAL 57
            L +  T   +    +    L  G    L CS+    +   PLT  W  +     +    
Sbjct: 115 KLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174

Query: 58  SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
                   +S L +      H  N +C ++   A+ T  + + +NV
Sbjct: 175 R-------SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
             G    + C ++  + P   +W K+G P+  S R  V           L I +      
Sbjct: 20  NLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQKGRIHK---LVIANALTEDE 73

Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
           G+Y              +K+ V        PS
Sbjct: 74  GDYVFAPDAYNVTL--PAKVHVIS-----GPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
           T+N+G+   L C I+  +IP   KW K+G  +  S  L +         LVI +      
Sbjct: 18  TVNLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQ-KGRIHKLVIANALTEDE 73

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNVPP 105
           G+Y           T   ++ V   P
Sbjct: 74  GDYVFAPDA--YNVTLPAKVHVISGP 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            E       C   H  P  T+ W K    L        S  +  +  L+I+++  A S  
Sbjct: 21  EEKGTAVFTCKTEH--PAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDT 77

Query: 178 YTCVASNTAAQARYSSKLQVKG 199
           YTC      ++A+    L V+G
Sbjct: 78  YTCDIGQAQSRAQ----LLVQG 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 9/101 (8%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S+     +       +     A   C         T+ W K    L  S     +  +  
Sbjct: 5   SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAA--TVTWRKGLLELRASGKHQPSQ-EGL 61

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPP 105
              L I ++    S  Y+C          Q + +L+V    
Sbjct: 62  TLRLTISALEKADSDTYTC-----DIGQAQSRAQLLVQGRR 97

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EGA   + C ++       + W K  + L    R+ +     D     L I+ +S A +
Sbjct: 21  SEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQ---DGTRCELQIHDLSVADA 74

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           GEY+C+       A     L V+ 
Sbjct: 75  GEYSCMCGQERTSAT----LTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
           S+ P + +     +  + G  A+L C ++K      ++W K    L +    S+   D  
Sbjct: 5   SSGPARFTQDLKTKEASEGATATLQCELSK---VAPVEWKKGPETLRDGGRYSLKQ-DGT 60

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
              L I  +S   +G YSC        +     L V   P
Sbjct: 61  RCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVRALP 96

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 18/187 (9%)

Query: 24  GERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           G   +L C    G        L ++ +         I           I S++  H+G Y
Sbjct: 19  GSPVTLRCQ---GGQETQEYRLYREKK--TAPWITRIPQELVKKGQFPIPSITWEHTGRY 73

Query: 83  SCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
            C   +  A  ++    ++ ++     K    A P   +  G    + C           
Sbjct: 74  RCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS--QVAFDGF 131

Query: 139 RWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS---- 193
              K+G+   P+   +      S  ++ S+  VS +    Y C A ++ +   +S     
Sbjct: 132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDL 191

Query: 194 -KLQVKG 199
            +L V G
Sbjct: 192 LELLVLG 198

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 15/191 (7%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
            P L   +P   +   E   L C     D+      L ++G + D    +   H     +
Sbjct: 8   KPSLL-AHPGPLVKSEETVILQCW---SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGA 121
              I  ++   +G Y C      +          +  +I+ +  K    A P   +  G 
Sbjct: 64  NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123

Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
              + C              ++G+    R P       +F +   +   +  H G Y C 
Sbjct: 124 NVTLSCSSR--SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCF 179

Query: 182 ASNTAAQARYS 192
            S   +   +S
Sbjct: 180 GSFHDSPYEWS 190

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 111 AFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSLLSINS 169
           A P   +       + C     D       L ++G        +         +  SI+ 
Sbjct: 13  AHPGPLVKSEETVILQC---WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69

Query: 170 VSAAHSGEYTCVASNTAAQARYSSK 194
           ++   +G Y C  S T +  + S+ 
Sbjct: 70  MTQDLAGTYRCYGSVTHSPYQVSAP 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
            EG    + C ++       ++W      L    ++ +     +     L + ++    S
Sbjct: 21  LEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ---EGAMLELVVRNLRPQDS 75

Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
           G Y+C   +    A     L V  
Sbjct: 76  GRYSCSFGDQTTSAT----LTVTA 95

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
            +  G  A+L C ++   +   +KW      L      S+   +     LV+ ++  + S
Sbjct: 19  EVLEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ-EGAMLELVVRNLRPQDS 75

Query: 80  GNYSCTVRNMVAEDTQVQ-RLIVNVPPK 106
           G YSC        D      L V   P 
Sbjct: 76  GRYSC-----SFGDQTTSATLTVTALPS 98

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 13/194 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P ++ P  P   + +G    L C +   D   +++W      LD S  L     D   S+
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG----LDTS--LGAVQSDTGRSV 60

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
           L + + S   +G   C             +L+V   P           L  G    V C 
Sbjct: 61  LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP--NQLTVSPAALVPGDPE-VACT 117

Query: 129 VTHGDPP----LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
                P     L+   L  G+ L     +     +          V    +  +      
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLG 177

Query: 185 TAAQARYSSKLQVK 198
           T        +  ++
Sbjct: 178 TPVPPALYCQATMR 191

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 95  QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 154
           QV+ L V  P        P   +  GA  ++ C +   D   +++W      L       
Sbjct: 4   QVKPLQVEPPE-------PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG------ 50

Query: 155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
               D+  S+L++ + S + +G   CV S      +++ +L V
Sbjct: 51  AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 14/165 (8%)

Query: 43  KWLKDGRYLDNSAALSITHVDQYNSML------VIDSVSARHSGNYSCTVRNMVAEDTQV 96
            WL  G      + +  +   +    +        + +      +   ++R    ++  +
Sbjct: 412 PWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSI 471

Query: 97  QRLIVNVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFP 152
           +    +       F     G    EG      C V     P  + W KD + L  S ++ 
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKY- 529

Query: 153 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
             +   +     L+IN V     GEYT  A N+         L V
Sbjct: 530 --MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P+         +  G+ A+  C +     P  + W KD R L  S      +    +  
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNGN-DYG 539

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           L I+ V     G Y+   +N      ++  L V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 58.3 bits (140), Expect = 5e-10
 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 14/158 (8%)

Query: 33  ITKGDIPLTIKWLKDGRYLD--NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90
                      W   G      N A L+I+        ++ + +++ H G  +       
Sbjct: 99  KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI------ 152

Query: 91  AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-- 148
            ++ +V        P           +  G      C    G      R    G  +   
Sbjct: 153 -DEVKVLGHPCTRTPHFLRIQNV--EVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDA 208

Query: 149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           P   + V+    F +  ++ + +   +G+Y C+     
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 10/129 (7%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM--LVIDSVSAR 77
            +N G+ A+  CS   G      +    G  + ++    I        +    + + + R
Sbjct: 175 EVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 233

Query: 78  HSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIESFAFPFDGLPEGARTRVI---CGVTHGD 133
            +G Y C +R            L+V  PP   +   P      GA    I       +GD
Sbjct: 234 DAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA---PPQLASVGATYLWIQLNANSINGD 290

Query: 134 PPLTIRWLK 142
            P+  R ++
Sbjct: 291 GPIVAREVE 299

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 54.3 bits (131), Expect = 6e-10
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           EGA   + C ++    P  + W K  + L    R  +     D     L I  + A  +G
Sbjct: 33  EGATAVLRCELS-KMAP--VEWWKGHETLRDGDRHSLRQ---DGARCELQIRGLVAEDAG 86

Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
           EY C+       A     L V+ 
Sbjct: 87  EYLCMCGKERTSAM----LTVRA 105

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           +P K +          G  A L C ++K      ++W K    L +    S+   D    
Sbjct: 18  LPIKFTEGLRNEEATEGATAVLRCELSK---MAPVEWWKGHETLRDGDRHSLRQ-DGARC 73

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            L I  + A  +G Y C        +     L V   P
Sbjct: 74  ELQIRGLVAEDAGEYLCMCGK----ERTSAMLTVRAMP 107

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 7e-10
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P +     +  +  G  A L C         ++ W+     +    A  +      +  
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           L   +V+ + +G Y+C V N V   T    L V    
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSV 170
           + EG    + C         ++ W+     +        R  V           L+  +V
Sbjct: 353 VTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GTLNFTNV 404

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLP 205
           +   +G YTC+ SN+      S+ L V G  +   
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 24  GERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
           G   ++ C    G +      L K+           +   ++      I S++  ++G Y
Sbjct: 19  GNSVTIWCQ---GTLEAREYRLDKEESPAPWDRQNPLEPKNKAR--FSIPSMTEDYAGRY 73

Query: 83  SCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
            C  R+     +Q    ++ ++     K    A P   +  G    ++C      P  T 
Sbjct: 74  RCYYRSP-VGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS--RSPMDTF 130

Query: 139 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS----- 193
              K+          +        +   ++ V++ H G Y C +S+  +    S      
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPL 190

Query: 194 KLQVKG 199
           +L V G
Sbjct: 191 ELIVSG 196

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 5   FSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
           F+    ++     ++  ++ G     +C    GD P  I WL   ++L ++ +     V 
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVF 438

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
             +  L +     + +G Y C   N    D+    L V 
Sbjct: 439 P-DGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFS 162
             +I         + EG   + +C    GDPP  I WL      +S +    ++      
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
             L +       +G Y C+A+N        + L V+
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 3/94 (3%)

Query: 13  SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
                    ++G+  ++ C  TK      +        + +  +     V   N  L   
Sbjct: 250 EYKESAWEAHLGDTLTIRCD-TKQQGMTKVWVSPSNEQVLSQGSNGSVSVR--NGDLFFK 306

Query: 73  SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
            V     G Y+C        +T    L V     
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             G    + C          +      + +      +   +   +  L    V     G 
Sbjct: 259 HLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLS--QGSNGSVSVRNGDLFFKKVQVEDGGV 315

Query: 178 YTCVASNTAAQARYSSKLQVKG 199
           YTC A         S +L+V  
Sbjct: 316 YTCYAMGETFNETLSVELKVYN 337

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 33/207 (15%), Positives = 57/207 (27%), Gaps = 18/207 (8%)

Query: 3   VIFSTVPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITH 61
           +     P     + P          S  C         +T+KW K+G  L  S   +   
Sbjct: 111 LSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTNVD 168

Query: 62  VDQYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP---PKIESFAF 112
               +      S   +            C V + V       R   N+        +   
Sbjct: 169 PVGESVSYSIHSTAKVVLTREDVHSQVICEVAH-VTLQGDPLRGTANLSETIRVPPTLEV 227

Query: 113 PFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSI 167
               +    +  V C V    P  L + WL++G          V++      ++ S L +
Sbjct: 228 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLV 287

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
           N  +     + TC   +    A   S 
Sbjct: 288 NVSAHRDDVKLTCQVEHDGQPAVSKSH 314

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 31/223 (13%)

Query: 15  TNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
             P+++++V  GE A L C++T       I+W +       +  L     + +   +   
Sbjct: 7   IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAG---PARELIYNQKEGHFPRVTTV 63

Query: 73  SVSARHSGN-YSCTVRNMVAEDT--------------------QVQRLIVNVPPKIESFA 111
           S S +     +S ++ N+   D                         L V   P     +
Sbjct: 64  SESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS 123

Query: 112 FPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLS 166
            P             C      P  +T++W K+G  LS       PV  S   S  S   
Sbjct: 124 GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAK 183

Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
           +         +  C  ++   Q              R+PP+  
Sbjct: 184 VVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLE 226

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 52.0 bits (124), Expect = 5e-09
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 15  TNPE-RTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVD-------QY 65
             PE ++   G   S  CS     D P+T  W  D   L ++   +  H+        +Y
Sbjct: 15  VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEY 74

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVN 102
            ++L + +V     G Y C + N           L +N
Sbjct: 75  TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 48.5 bits (115), Expect = 8e-08
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 120 GARTRVICGVT-HGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVS 171
           G+     C      D P+T  W  D + L                +L  ++++L + +V 
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 172 AAHSGEYTCVASNTA 186
               G Y CV SN  
Sbjct: 85  FTSEGXYQCVISNHF 99

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P +     +  ++ G  A L C   +     ++KWL     + + A+         +  
Sbjct: 352 APFIMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           L    V    +G Y+C V N+         L V+   
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 15/98 (15%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSV 170
           + EG    + C      P  +++WL     +       PR  V           L+ + V
Sbjct: 364 ISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND------GTLNFSHV 414

Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSY 208
             + +G YTC+ +N A  +  S+ L V          +
Sbjct: 415 LLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 18/205 (8%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P +    P   +   ++ ++ C    G +    +   +G             +++    
Sbjct: 7   KPFIW-AEPHFMVPKEKQVTICCQGNYGAV--EYQLHFEGSLFAVDRPKPPERINKVK-- 61

Query: 69  LVIDSVSARHSGNYSCTVRNMV---AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
             I  +++R +G YSC  R           +  ++  +         P   +  G +   
Sbjct: 62  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 121

Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
            C +           LK+G+    +            +   +  V+ AH G Y C  S  
Sbjct: 122 YCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174

Query: 186 AAQARYSS---KLQVKGNLNRLPPS 207
                + S   KL V G++     +
Sbjct: 175 NHAWSFPSEPVKLLVTGDIENTSLA 199

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 51.5 bits (123), Expect = 8e-09
 Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 12/93 (12%)

Query: 118 PEGARTRVICGVTHGDPPL---TIRWLKDGK---PLSPRFPVNVSDLDSFSSL-----LS 166
             G     I  V   +  L   TI+W K             + + +     S      + 
Sbjct: 20  KVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78

Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           I       +G Y C  +        S  L+V  
Sbjct: 79  IIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 51.5 bits (123), Expect = 8e-09
 Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 20  TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAA-----LSITH---VDQYNSML 69
           T+ VGE  + I  +   D+    TIKW K       S A     L  T       Y   +
Sbjct: 18  TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEM 77

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
            I       +GNY C V      D+    L V+      
Sbjct: 78  QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 21/224 (9%)

Query: 6   STVPPKLSPTNP--ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITH 61
              PP +       +   +      L+C ++ G  P  + I WL+DG+ +D   + + T 
Sbjct: 4   DFTPPTVKILQSSCDGGGHFPPTIQLLCLVS-GYTPGTIQITWLEDGQVMDVDLSTASTT 62

Query: 62  VD----QYNSMLVIDSVSARHSGNYSCTVR---NMVAEDTQVQRLIVNVPPKIESFAFPF 114
            +       S L +          Y+C V    +   + T+                   
Sbjct: 63  QEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSP 122

Query: 115 DGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLS 166
             L       + C    +      + + W +              +         +S L 
Sbjct: 123 FDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH-STRKEEKQRNGTLTVTSTLP 181

Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
           + +        Y C  ++                    P  Y  
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF 225

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 28/196 (14%), Positives = 57/196 (29%), Gaps = 24/196 (12%)

Query: 9   PPKLSPTNP-ERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
                 + P    L + +  ++ C +         + + W +      N +  +     Q
Sbjct: 112 GVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS--TRKEEKQ 169

Query: 65  YN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN----VPPKIESFAFPF 114
            N      S L + +        Y C V +       ++           P++ +FA P 
Sbjct: 170 RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPE 229

Query: 115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSI 167
                  RT + C + +  P  ++++WL +   L                     S L +
Sbjct: 230 WPGSRDKRT-LACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV 288

Query: 168 NSVSAAHSGEYTCVAS 183
                    E+ C A 
Sbjct: 289 TRAEWEQKDEFICRAV 304

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 12/91 (13%)

Query: 119 EGARTRVICGVTHGDPPL---TIRWLKDGK-PLSPRFPVNVSDLDSF-------SSLLSI 167
            G        V  G   L    ++W K     LS +   ++   DS+          L I
Sbjct: 18  VGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
                A +G Y C  S        +  L V 
Sbjct: 77  TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 20  TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHV--------DQYNSML 69
            + VG   +    +    +     +KW K      +S       +          Y   L
Sbjct: 15  EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFEL 74

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
            I       +G+Y C V      D     L V+
Sbjct: 75  HITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 15/183 (8%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
              L    P   ++ G   ++ C    G +      L K+G          +   ++   
Sbjct: 5   KATLW-AEPGSVISRGNSVTIRCQ---GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR- 59

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAE----DTQVQRLIVNVPPKIESFAFPFDGLPEGART 123
              I S++  H+G Y C   +        D  ++ ++     K    A P   +  G   
Sbjct: 60  -FSIPSMTEHHAGRYRCYYYSPAGWSEPSDP-LELVVTGFYNKPTLSALPSPVVTSGENV 117

Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA 182
            + CG             ++G         +       F +L  +  V+ +H     C  
Sbjct: 118 TLQCGS--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

Query: 183 SNT 185
           S  
Sbjct: 176 SRR 178

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 20/198 (10%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P +    P   +   ++ ++ C    G +    +   +G             +++    
Sbjct: 4   KPFIW-AEPHFMVPKEKQVTICCQGNYGAV--EYQLHFEGSLFAVDRPKPPERINKVK-- 58

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTR 124
             I  +++R +G YSC  R      ++    +  ++  +         P   +  G +  
Sbjct: 59  FYIPDMNSRMAGQYSCIYRV-GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 117

Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
             C +           LK+G+    +            +   +  V+ AH G Y C  S 
Sbjct: 118 FYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGSY 170

Query: 185 TAAQARYSS---KLQVKG 199
                 + S   KL V G
Sbjct: 171 NNHAWSFPSEPVKLLVTG 188

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 15  TNPERTLNV--GERASLICSITKGDIPLTIKWLKDGR---YLDNSAAL-----SITHVDQ 64
           TN   T+ V  G+  +L C  +      +++WL       +L+    L      + H   
Sbjct: 5   TNHTETITVEEGQTLTLKCVTSLRKNS-SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
               + + +V+ +  G Y C   +     T+  ++IV    K E   +P    P
Sbjct: 64  NQLSITVPNVTLQDEGVYKCLHYSDSVS-TKEVKVIVLATMKGEFCRYPSHWRP 116

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 14/90 (15%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL----------SPRFPVNVSDLDSFSSLLSI 167
            EG    + C VT      +++WL                + ++ +     +  S  +++
Sbjct: 14  EEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS--ITV 70

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            +V+    G Y C+   + + +    K+ V
Sbjct: 71  PNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 21/206 (10%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSI---TKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
                + P  P+ TL +     + C +   +K D  +   W  D   +  +   +    +
Sbjct: 228 VSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ--TQPREE 285

Query: 64  QYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----NVPPKIESFAFP 113
           Q+N      S L I      +   + C V +        + +         P++ +   P
Sbjct: 286 QFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPP 345

Query: 114 FDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSFSSLLSINSVS 171
            + + +   + + C +T   P  +T+ W  DG+          + D D    + S  +V 
Sbjct: 346 KEQMAKDKVS-LTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQ 404

Query: 172 AA--HSGE-YTCVASNTAAQARYSSK 194
            +   +G  +TC   +      ++ K
Sbjct: 405 KSNWEAGNTFTCSVLHEGLHNHHTEK 430

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 42/206 (20%), Positives = 66/206 (32%), Gaps = 28/206 (13%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
            T PP + P  P          +L C + KG  P  +T+ W             ++   D
Sbjct: 116 KTTPPSVYPLAPGSAAQTNSMVTLGCLV-KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD 174

Query: 64  QYN--SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES-----------F 110
            Y   S + +   S R S   +C V +  A  T+V + IV      +            F
Sbjct: 175 LYTLSSSVTV-PSSPRPSETVTCNVAHP-ASSTKVDKKIVPRDCGCKPCICTVPEVSSVF 232

Query: 111 AFP---FDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDS 160
            FP    D L      +V C    ++  DP +   W  D   +            +    
Sbjct: 233 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR 292

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTA 186
             S L I      +  E+ C  ++ A
Sbjct: 293 VVSALPIMHQDWLNGKEFKCRVNSAA 318

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 26/205 (12%), Positives = 54/205 (26%), Gaps = 35/205 (17%)

Query: 17  PERTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSM---- 68
             +   + +  ++ C+I          + I W       D    +     D   +     
Sbjct: 11  GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70

Query: 69  -------------LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD 115
                        L +  +    +G Y C V     +     +L V   P          
Sbjct: 71  IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPAS--RLLLDQ 128

Query: 116 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD-----------SFSS 163
              +    + +C  +   P  + I W K  +       ++   +            + +S
Sbjct: 129 VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS 188

Query: 164 LLSINSVSAAHSGEYTCVASNTAAQ 188
            L +NS        Y CV  + +  
Sbjct: 189 CLKLNSSQEDPGTVYQCVVRHASLH 213

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 17/117 (14%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVD 63
              P       +  +   E    +C  +      I   I W K  +   +   +S   + 
Sbjct: 117 VASPASRLLLDQVGMKENE-DKYMCESSGFYPEAI--NITWEKQTQKFPHPIEISEDVIT 173

Query: 64  -----------QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
                         S L ++S        Y C VR+            +       S
Sbjct: 174 GPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 18/174 (10%), Positives = 41/174 (23%), Gaps = 34/174 (19%)

Query: 23  VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---------NSMLVIDS 73
           V    +    +        + W K    +             +         +  L I +
Sbjct: 9   VYGNVTF--HVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPFDGLPEGARTRVICGVTHG 132
           +++     Y     N+         ++  V  P I           E +   + C V  G
Sbjct: 67  LTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW---------ECSNATLTCEVLEG 117

Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
                ++  +  + L                  +++         + C A N  
Sbjct: 118 TDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRV 158

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 16/91 (17%)

Query: 14  PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
            + P         A+L C + +G   + +K  +   +L +    ++++            
Sbjct: 96  VSKPMIYWECSN-ATLTCEVLEGT-DVELKLYQGKEHLRSLRQKTMSYQWT--------- 144

Query: 74  VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
                   + C   N V++++++   +VN P
Sbjct: 145 ---NLRAPFKCKAVNRVSQESEM--EVVNCP 170

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 26/207 (12%)

Query: 10  PKLSPTNP-ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQYN 66
           P+LS   P    L +G  A+L C++T       +T  W          +A+         
Sbjct: 4   PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSS----GKSAVQGPPERDLC 59

Query: 67  ------SMLVIDSVSARHSGNYSCTVRNM---VAEDTQVQRLIVNVPPKIESFAFPFDGL 117
                 S+L   +    H   ++CT             + +      P++     P + L
Sbjct: 60  GCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEEL 119

Query: 118 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---------SFSSLLSI 167
                  + C      P  + +RWL+  + L     +  +            + +S+L +
Sbjct: 120 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV 179

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
            +        ++C+  + A    ++ K
Sbjct: 180 AAEDWKKGDTFSCMVGHEALPLAFTQK 206

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
               P         T   G+  +L C   + +   T+ W+       +      +     
Sbjct: 3   PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGM 58

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
              L++ SV    SGNYSC              L+V+VPP
Sbjct: 59  GRRLLLRSVQLHDSGNYSCYRAG---RPAGTVHLLVDVPP 95

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 16/123 (13%)

Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
           G    + C     +   T+ W+              S        L + SV    SG Y+
Sbjct: 21  GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76

Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVY 239
           C  +    +   +  L V      +PP    +        ++        W   +   + 
Sbjct: 77  CYRAG---RPAGTVHLLVD-----VPPEEPQLSCFRKSPLSNVVC----EWGPRSTPSLT 124

Query: 240 CTY 242
              
Sbjct: 125 TKA 127

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 13/175 (7%)

Query: 11  KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV 70
           ++     +  +       + CS T  + P                +L+   +D+      
Sbjct: 4   EVHVRPKKLAVEPKGSLEVNCS-TTCNQPEVGGL---------ETSLNKILLDEQAQWKH 53

Query: 71  IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
               +  H     C       +++    + V  PP+          +  G    + C V 
Sbjct: 54  YLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVP 113

Query: 131 HGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
             +P   LT+   +  + L    F          ++  +  +        ++C+A
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 15/168 (8%)

Query: 17  PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
            +  L  G    + CS T  D P  +           +       +   N+  V +  + 
Sbjct: 7   SKVILPRGGSVLVTCS-TSCDQPKLLGI--------ETPLPKKELLLPGNNRKVYELSNV 57

Query: 77  RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP- 135
           +      C       + T    L V   P+    A      P G +  + C V  G P  
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117

Query: 136 -LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
            LT+  L+  K L     V     +      ++      H  +++C  
Sbjct: 118 QLTVVLLRGEKELKREPAVG----EPAEVTTTVLVRRDHHGAQFSCRT 161

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 23/202 (11%)

Query: 12  LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           + P   +  L +     + C +    + D  + I W  +   +  +   + TH + YN  
Sbjct: 243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ--TQTHREDYNST 300

Query: 67  ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFPFDGL 117
               S L I          + C V N       ++R I         P++     P + +
Sbjct: 301 LRVVSALPIQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVYVLPPPEEEM 359

Query: 118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAA-- 173
            +   T + C VT   P  + + W  +GK          V D D    + S   V     
Sbjct: 360 TKKQVT-LTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW 418

Query: 174 HSGE-YTCVASNTAAQARYSSK 194
                Y+C   +      +++K
Sbjct: 419 VERNSYSCSVVHEGLHNHHTTK 440

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 43/235 (18%), Positives = 68/235 (28%), Gaps = 32/235 (13%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITK-GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
            T  P + P  P      G   +L C +      P+T+ W             ++   D 
Sbjct: 120 KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 179

Query: 65  Y--NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPF-------- 114
           Y  +S + + S +   S + +C V +  A  T+V + I    P I+              
Sbjct: 180 YTLSSSVTVTSSTWP-SQSITCNVAHP-ASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG 237

Query: 115 ------------DGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
                       D L       V C    V+  DP + I W  +   +         +  
Sbjct: 238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDY 297

Query: 160 ----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
                  S L I         E+ C  +N    A     +       R P  Y L
Sbjct: 298 NSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVL 352

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ---VQRLIVNVPPKIESFAFPFDGLPEG 120
           Q  ++L I ++    +G Y C+ +N          ++ +   V  K    A P   +  G
Sbjct: 49  QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108

Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
               + C              K+G P   + P        + +   I +V+AAHSG Y C
Sbjct: 109 GDVTLQCQTR--YGFDQFALYKEGDPAPYKNPER-----WYRASFPIITVTAAHSGTYRC 161

Query: 181 VASNTAAQARYS 192
            + ++     +S
Sbjct: 162 YSFSSRDPYLWS 173

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVI 71
           T+  G  A L C +   +   +++W    +               + +     +   + +
Sbjct: 17  TVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75

Query: 72  DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
             VS    G Y+C++   +   T    L V   P
Sbjct: 76  SDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 23/202 (11%)

Query: 12  LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           + P  P+  L +     + C +    K D  +   W  D    +   A +    +Q+N  
Sbjct: 6   IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDV--EVHTAQTKPREEQFNST 63

Query: 67  ----SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
               S L I      +   + C V +       E T  +       P++ +   P + + 
Sbjct: 64  FRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMA 123

Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD-----SFSSLLSINSVSA 172
           +   + + C +T   P  +T+ W  +G+P    +      +D        S L++   + 
Sbjct: 124 KDKVS-LTCMITDFFPEDITVEWESNGQPAE-NYKNTQPIMDTDGSYFVYSKLNVQKSNW 181

Query: 173 AHSGEYTCVASNTAAQARYSSK 194
                +TC   +      ++ K
Sbjct: 182 EAGNTFTCSVLHEGLHNHHTEK 203

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 23/202 (11%)

Query: 12  LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           + P N +  L +     + C +      D  + I W  +    +   A + TH + YN  
Sbjct: 14  IFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNV--EVHTAQTQTHREDYNST 71

Query: 67  ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN----VPPKIESFAFPFDGLP 118
               S L I          + C V N        + +         P++     P + L 
Sbjct: 72  IRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLS 131

Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD-----SFSSLLSINSVSA 172
               + + C V   +P  +++ W  +G      +      LD        S L++ +   
Sbjct: 132 RKDVS-LTCLVVGFNPGDISVEWTSNGHTEE-NYKDTAPVLDSDGSYFIYSKLNMKTSKW 189

Query: 173 AHSGEYTCVASNTAAQARYSSK 194
             +  ++C   +   +  Y  K
Sbjct: 190 EKTDSFSCNVRHEGLKNYYLKK 211

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 32/218 (14%)

Query: 6   STVPPKLSPTNP-ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHV 62
           S  P +L    P    L +   A L C +        L++ W ++     N     +   
Sbjct: 9   SCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKS--GNLRPDPMVLQ 66

Query: 63  DQYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----NVPPKIESFAF 112
           + +N      S + + +        ++CTV++        + +        PP I  FA 
Sbjct: 67  EHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAP 126

Query: 113 PFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN---------------VS 156
             + L     T + C V    P  + IRWL+D + +     V                  
Sbjct: 127 HPEELSLSRVT-LSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDG 185

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
           D     S +S+ +        + C+A + A   R+S +
Sbjct: 186 DTFFVYSKMSVETAKWNGGTVFACMAVHEALPMRFSQR 223

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
           ST  P + P  P      G  A+L C + K   P  +T+ W         S   +   V 
Sbjct: 216 STKGPSVFPLAPSSKSTSGGTAALGCLV-KDYFPQPVTVSWNSGAL---TSGVHTFPAVL 271

Query: 64  QYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFA-FPFDG 116
           Q +      S++ + S S+  +  Y C V +  +     +R+     P +  F   P D 
Sbjct: 272 QSSGLYSLSSVVTVPS-SSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDT 330

Query: 117 LPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINS 169
           L       V C    V+H DP +   W  DG  +            +      S+L++  
Sbjct: 331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLH 390

Query: 170 VSAAHSGEYTCVASNTA 186
            +     EY C  SN A
Sbjct: 391 QNWLDGKEYKCKVSNKA 407

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSI---TKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
               L P  P+ TL +     + C +   +  D  +   W  DG       A +     Q
Sbjct: 318 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGV--QVHNAKTKPREQQ 375

Query: 65  YN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFP 113
           YN      S+L +   +      Y C V N  A    +++ I         P++ +    
Sbjct: 376 YNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQVYTLPPS 434

Query: 114 FDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVNVSDLDSF--SSLLSIN 168
            + + +   + + C V    P  + + W  +G+P +     P  +    SF   S L+++
Sbjct: 435 REEMTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD 493

Query: 169 SVSAAHSGEYTCVASNTAAQARYSSK 194
                    ++C   + A    Y+ K
Sbjct: 494 KSRWQQGNVFSCSVMHEALHNHYTQK 519

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 27/133 (20%), Positives = 36/133 (27%), Gaps = 15/133 (11%)

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL-PEGARTR 124
           N    +  V     G Y  T+     +      L V  PPK+           P  A   
Sbjct: 253 NGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPE 312

Query: 125 VICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSF-----------SSLLSINSVS 171
           ++C V+H  P   L + W   G P             S            S  L    V+
Sbjct: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372

Query: 172 AAHSGE-YTCVAS 183
               G  Y C   
Sbjct: 373 TEQHGARYACRIH 385

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 26/207 (12%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHV 62
              PPK      +  L  G    + C +    + D  +   W  D    +   A +    
Sbjct: 19  FIFPPK-----TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDV--EVHTAQTHAPE 71

Query: 63  DQYN------SMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAF 112
            Q N      S L I      +   + C V +       E +  +       P++ + A 
Sbjct: 72  KQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP 131

Query: 113 PFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSI 167
           P + + +   + + C V    PP +   W  +G+P          ++        S L++
Sbjct: 132 PKEEMTQSQVS-ITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNV 190

Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
              +      +TC   +   +  ++ K
Sbjct: 191 KKETWQQGNTFTCSVLHEGLENEHTEK 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 68/220 (30%)

Query: 1   MLVIF---STVPPKL--------SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR 49
            L +F   + +P  L          ++    +N   + SL+            K  K+  
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----------EKQPKEST 425

Query: 50  Y------------LDNSAALSITH---VDQYNSMLVIDS--VSARHSGNYSC-------T 85
                        L+N  AL   H   VD YN     DS  +   +   Y          
Sbjct: 426 ISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 86  VRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 142
                   T  + + ++   +  KI       D     A   ++      +    +++ K
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRH-----DSTAWNASGSIL------NTLQQLKFYK 531

Query: 143 DG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
                  P++   V+ +  F  L  I         +YT +
Sbjct: 532 PYICDNDPKYERLVNAILDF--LPKIEENL--ICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 45/277 (16%), Positives = 76/277 (27%), Gaps = 91/277 (32%)

Query: 37  DIPLTIKWLKDG--RYLDNSAALSITHVDQY-NSMLVIDSV-SARH--SGNYSC----TV 86
           +I L I  ++    R L +           Y N +LV+ +V +A+   + N SC    T 
Sbjct: 222 NIKLRIHSIQAELRRLLKSK---------PYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 87  RN-----MVAEDTQVQRLIVNVPP---KIES---FA----FPFDGLPEGART---RVI-- 126
           R       ++  T     + +        E               LP    T   R +  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 127 CGVTHGDPPLTI-RWLKDGKP------------LSPR-----------FPVNV------- 155
              +  D   T   W                  L P            FP +        
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 156 ---------SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
                    SD+    + L   S+      E T   S  +       KL+ +  L+R   
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHR--- 447

Query: 207 SYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL 243
             ++V     Y     +  + D      + Y Y  ++
Sbjct: 448 --SIV---DHYNIPKTFDSD-DLIPPYLDQYFYS-HI 477

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 23/209 (11%)

Query: 6   STVPPKLSPTNP--ERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSIT 60
               P +    P  + TL +     + C +      D  +   W  DG  + N  A +  
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN--AKTKP 301

Query: 61  HVDQYN------SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESF 110
             +QYN      S+L +      +   Y C V N       E T  +       P++ + 
Sbjct: 302 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 361

Query: 111 AFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSIN 168
               D L +   + + C V    P  + + W  +G+P +       V D D    L S  
Sbjct: 362 PPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 420

Query: 169 SVSAA--HSGE-YTCVASNTAAQARYSSK 194
           +V  +    G  ++C   + A    Y+ K
Sbjct: 421 TVDKSRWQQGNVFSCSVMHEALHNHYTQK 449

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 51/238 (21%), Positives = 75/238 (31%), Gaps = 38/238 (15%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
           ST  P + P  P      G  A+L C + K   P  +T+ W         S   +   V 
Sbjct: 129 STKGPSVFPLAPSSKSTSGGTAALGC-LVKDYFPEPVTVSWNSGAL---TSGVHTFPAVL 184

Query: 64  QYNSM-----LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----------NVPPKIE 108
           Q + +     +V    S+  +  Y C V +    +T+V +                P  E
Sbjct: 185 QSSGLYSLSSVVTVPSSSLGTQTYICNVNHK-PSNTKVDKKAEPKSCDKTHTCPPCPAPE 243

Query: 109 SFAFP---------FDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV--- 153
               P          D L       V C    V+H DP +   W  DG  +         
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 303

Query: 154 -NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
              +      S+L++      +  EY C  SN A  A     +       R P  YTL
Sbjct: 304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 361

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* Length = 240

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 21/201 (10%)

Query: 12  LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           L P  P+ TL +     + C +      D  +   W  DG  +    A +    +QYN  
Sbjct: 27  LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV--HNAKTKPREEQYNST 84

Query: 67  ----SMLVIDSVSARHSGNYSCTVRNM----VAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
               S+L +      +   Y C V N       E T  +       P++ +     D L 
Sbjct: 85  YRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELT 144

Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAA 173
           +   + + C V    P  + + W  +G+P +                  S L+++     
Sbjct: 145 KNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQ 203

Query: 174 HSGEYTCVASNTAAQARYSSK 194
               ++C   + A    Y+ K
Sbjct: 204 QGNVFSCSVMHEALHNHYTQK 224

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 21/201 (10%)

Query: 12  LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
           L P  P+ TL +     + C +      D  +   W  DG  +    A +    +QYN  
Sbjct: 6   LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV--HNAKTKPREEQYNST 63

Query: 67  ----SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
               S+L +      +   Y C V N       E T  +       P++ +     D L 
Sbjct: 64  YRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELT 123

Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD----LDSFSSLLSINSVSAA 173
           +   + + C V    P  + + W  +G+P +                  S L+++     
Sbjct: 124 KNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 182

Query: 174 HSGEYTCVASNTAAQARYSSK 194
               ++C   + A    Y+ K
Sbjct: 183 QGNVFSCSVMHEALHNHYTQK 203

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR---YLDNSAAL-----SIT 60
                P   + T+  G    L C + K     +++W    +   Y     AL      + 
Sbjct: 38  QDDSQPWTSDETVVAGGTVVLKCQV-KDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLV 96

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
               +   + I +V+    G Y+C++   +   T    + V   P+
Sbjct: 97  TSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIPQ 141

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 39/249 (15%), Positives = 75/249 (30%), Gaps = 43/249 (17%)

Query: 6   STVPPKLSPTNPERTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHV 62
           S   PK+ P +   T        + C + +G  P   L++ W + G+      A +    
Sbjct: 124 SPTSPKVFPLSLCSTQP-DGNVVIAC-LVQGFFPQEPLSVTWSESGQ---GVTARNFPPS 178

Query: 63  DQYN-------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP----------- 104
              +       S L + +       + +C V++       V                   
Sbjct: 179 QDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP 238

Query: 105 --------PKIESFAFPFDGLPEGARTRVICGVT--HGDPPLTIRWLKDG--KPLSPRFP 152
                   P++       + L  G+   + C +T       +T  W        +     
Sbjct: 239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE 298

Query: 153 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR-----LPPS 207
            ++    S SS+L   +    H   +TC A+   ++   ++ L   GN  R     LPP 
Sbjct: 299 RDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP 358

Query: 208 YTLVFSQAS 216
              +     
Sbjct: 359 SEELALNEL 367

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 15  TNPERTLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHV-DQY------- 65
           T    +   G    L C ++     +T + W +  + L    A    H+   +       
Sbjct: 9   TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68

Query: 66  -NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIE 108
               L + S++   +G Y C            +  L V      E
Sbjct: 69  PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 21/194 (10%), Positives = 54/194 (27%), Gaps = 41/194 (21%)

Query: 13  SPTNPERTLNVGERASLICSI------TKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           SP +P   + +    + +C +              I W  +   +        T +++  
Sbjct: 9   SPESP--VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTA 63

Query: 67  SMLVIDSVSARHSGNYSCTVRNM--VAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTR 124
           S +    +++  +   +C +     + ++     +I  +PP                   
Sbjct: 64  SSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EKPKN 108

Query: 125 VICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLLSINSVSA 172
           + C + +    +   W    +                +F    +  D+ +S     S   
Sbjct: 109 LSC-IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVY 167

Query: 173 AHSGEYTCVASNTA 186
             + E    A N  
Sbjct: 168 FVNIEVWVEAENAL 181

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 9   PPKLSPTNPER-TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSI------ 59
           P  +    P+  ++  G+ A ++  +   ++P   TIKW K G++L+  +          
Sbjct: 11  PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKE 69

Query: 60  ---THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
              +  + Y   L I  V     G Y   V+     D+    + V  P
Sbjct: 70  SHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.98
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.97
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.97
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.97
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.97
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.96
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.96
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.96
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.96
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.96
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.96
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.96
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.96
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.95
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.95
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.95
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.95
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.95
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.95
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.95
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.95
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.95
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.94
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.94
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.94
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.94
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.94
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.94
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.94
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.94
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.94
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.94
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.94
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.94
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.94
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.94
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.94
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.94
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.94
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.93
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.93
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.93
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.93
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.93
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.93
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.93
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.93
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.93
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.93
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.92
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.92
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.92
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.92
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.92
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.92
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.91
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.91
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.91
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.91
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.91
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.91
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.91
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.91
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.91
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.91
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.9
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.9
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.9
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.9
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.9
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.9
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.9
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.9
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.9
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.9
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.9
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.89
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.89
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.89
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.89
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.89
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.89
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.89
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.89
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.89
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.89
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.89
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.89
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.89
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.89
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.89
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.89
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.88
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.88
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.88
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.88
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.88
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.88
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.88
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.88
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.88
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.87
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.87
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.87
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.87
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.87
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.87
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.87
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.87
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.87
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.87
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.87
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.87
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.87
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.87
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.87
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.87
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.86
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.86
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.86
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.86
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.86
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.86
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.86
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.86
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.86
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.86
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.85
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.85
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.85
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.85
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.85
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.85
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.85
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.84
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.84
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.84
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.84
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.84
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.84
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.84
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.83
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.83
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.83
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.83
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.82
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.82
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.82
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.82
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.81
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.81
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.81
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.81
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.8
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.8
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.79
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.78
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.78
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.78
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.77
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.76
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.76
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.76
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.76
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.76
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.75
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.75
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.75
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.74
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.74
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.73
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.73
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.72
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.72
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.72
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.72
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.72
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.71
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.71
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.71
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.71
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.71
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.7
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.7
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.7
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.7
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.69
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.69
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.69
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.68
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.68
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.68
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.68
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.68
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.67
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.67
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.67
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.67
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.67
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.67
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.66
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.66
1he7_A	126	High affinity nerve growth factor receptor; transf	99.66
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.65
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.65
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.65
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.65
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.65
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.65
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.64
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.64
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.64
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.64
1he7_A	126	High affinity nerve growth factor receptor; transf	99.64
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.64
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.64
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.64
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.64
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.63
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.63
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.63
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.63
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.62
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.62
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.62
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.62
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.62
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.62
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.62
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.62
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.62
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.62
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.61
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.61
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.61
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.61
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.61
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.61
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.61
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.61
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.61
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.6
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.6
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.6
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.6
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.6
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.59
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.59
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.59
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.59
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.59
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.59
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.59
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.59
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.58
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.58
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.58
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.58
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.58
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.57
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.57
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.57
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.57
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.57
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.57
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.57
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.57
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.57
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.56
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.56
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.56
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.56
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.56
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.56
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.55
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.55
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.55
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.55
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.55
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.55
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.55
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.55
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.55
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.55
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.55
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.54
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.54
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.54
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.53
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.53
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.53
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.53
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.53
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.53
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.52
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.52
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.52
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.52
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.52
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.51
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.51
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.51
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.51
2ens_A	96	Advanced glycosylation END product-specific recept	99.51
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.5
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.5
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.5
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.5
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.5
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.5
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.5
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.49
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.49
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.49
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.49
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.48
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.48
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.48
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.48
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.48
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.47
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.47
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.47
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.47
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.47
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.47
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.46
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.46
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.46
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.46
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.46
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.45
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.45
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.45
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.45
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.45
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.45
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.45
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.44
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.44
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.44
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.44
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.43
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.42
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.42
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.42
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.41
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.41
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.41
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.41
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.41
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.41
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.41
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.41
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.41
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.4
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.4
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.4
2ens_A	96	Advanced glycosylation END product-specific recept	99.4
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.4
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.4
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.4
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.4
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.39
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.39
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.39
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.38
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.38
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.38
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.38
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.38
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.37
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.36
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.36
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.36
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.36
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.36
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.36
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.36
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.35
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.35
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.35
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.34
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.34
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.34
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.33
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.33
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.33
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.32
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.32
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.32
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.32
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.32
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.32
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.32
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.31
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.31
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.31
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.31
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.3
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.3
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.3
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.29
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.29
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.29
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.28

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3.2e-33  Score=207.16  Aligned_cols=227  Identities=25%  Similarity=0.419  Sum_probs=181.5

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+.++|.|.+. +.|.+.+.|++++..+....++...... ....|.|.+++.+|+|.|+|.+
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~   80 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYA   80 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEE-SSSCCEEEEEETTEECCSSSSEEEEEET-TEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEE-cCCCCEEEEEECCEECcCCCcEEEEEcC-CEEEEEEecCCcccCEEEEEEE
Confidence            4688888888888999999999999996 7777899999999998876665544322 3578999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (243)
                      .+..+..+..+.|.|..+|.+.........+..|+.+.|.|.+ .|.|.+.+.|++++..+.......... ......|.
T Consensus        81 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~  158 (284)
T 2rik_A           81 SNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSF-VESVAVLE  158 (284)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEE-ETTEEEEE
T ss_pred             EECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEE-cCCEEEEE
Confidence            9998888888899999888765443333446789999999999 588999999999999988765544332 23357899


Q ss_pred             EeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecC--CCCCeeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN--RLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      |.++..+|+|.|+|.|.|..|.....+.|.|...+.  ..|....+..+..+.+.|.....|  .+.|+++|..+
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~  233 (284)
T 2rik_A          159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL  233 (284)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEE
T ss_pred             ECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEEC
Confidence            999999999999999999999988888998883221  122233455677888899876654  89999998654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=5.1e-32  Score=218.78  Aligned_cols=225  Identities=23%  Similarity=0.465  Sum_probs=180.2

Q ss_pred             eeEEEecCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132          2 LVIFSTVPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus         2 ~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      ..|.|..||.+... .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|
T Consensus       283 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-g~P~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G  360 (570)
T 3b43_A          283 AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSG  360 (570)
T ss_dssp             EEECCBCCCEEEECCCSBCCEESSCEEEEEEEEE-SSSSCEEEEEETTEECCCSSSEEEEEET-TEEEEEEESCCGGGCE
T ss_pred             EEEEeecCCcccccCCCccEEcCCCcEEEEEEEe-eCCCCEEEEeECCEECCCCCcEEEEEEC-CEEEEEECCCCcccCE
Confidence            35667788876654 3345578999999999995 8888999999999999877665544322 2568999999999999


Q ss_pred             eEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         81 NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      .|+|.|.|..|.....+.|.|..+|.+...+.. ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.....+.... +.
T Consensus       361 ~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~-~~~~~G~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~  437 (570)
T 3b43_A          361 DYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-VETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIMS-EN  437 (570)
T ss_dssp             EEEEEEEBTTBCCEEEEEECEECCCEECSCCCC-EEECTTCCEEEEEEE-ESSSSCCCEEEETTEECCSSSSEEEEE-ET
T ss_pred             EEEEEEEeCCCEEEEEEEEEecCCCeeecCCCc-eeecCCCEEEEEEEE-ecCCCCEEEEEECCEECcCCCCEEEEE-cC
Confidence            999999999999888899999988876654433 456789999999999 699999999999999988766554433 23


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCcccc--cccceE
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSF--EQDSWM  231 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~--~~~~W~  231 (243)
                      ....|.|.++..+|+|.|+|.|.|..|.....+.|.|.     .||.+..       ..++.+.+.|...+.  +.+.|+
T Consensus       438 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~-----~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~  512 (570)
T 3b43_A          438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-----APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF  512 (570)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC-----CCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred             CEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec-----cCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEE
Confidence            34679999999999999999999999999888888888     6666543       345667778876554  489999


Q ss_pred             EeCCe
Q psy11132        232 IDNEN  236 (243)
Q Consensus       232 ~~~~~  236 (243)
                      ++|..
T Consensus       513 k~~~~  517 (570)
T 3b43_A          513 KDKGE  517 (570)
T ss_dssp             ETTEE
T ss_pred             eCCeE
Confidence            99744

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=8.8e-32  Score=217.38  Aligned_cols=221  Identities=27%  Similarity=0.468  Sum_probs=178.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|++.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.|.
T Consensus       196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~-g~p~p~i~W~k~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~  273 (570)
T 3b43_A          196 VPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYAS  273 (570)
T ss_dssp             CCCEEEECCCCBCCBSBSCEEEEEEEE-SSSCCEEEEEETTEECCTTSSEEEEEET-TEEEEEESSBCGGGCEEEEEEEE
T ss_pred             CCCccccCCceeEecCCCeEEEEEEEE-ECCCCEEEEEECCEECcCCCcEEEEEEC-CEEEEEEcccCcccCEEEEEEEE
Confidence            467777777778899999999999995 7788899999999998876665544322 24689999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEE
Q psy11132         88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i  167 (243)
                      |..|..+..+.|.|..+|.+.........+..|+.+.|.|.+ .|.|.+.+.|++++..+........... .....|.|
T Consensus       274 N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~i  351 (570)
T 3b43_A          274 NVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAVLEM  351 (570)
T ss_dssp             ETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEE-ESSSSCEEEEEETTEECCCSSSEEEEEE-TTEEEEEE
T ss_pred             CCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEE-eeCCCCEEEEeECCEECCCCCcEEEEEE-CCEEEEEE
Confidence            999988888999998888765443333456789999999999 6999999999999999887665544322 23567999


Q ss_pred             eecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCee-------eeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       168 ~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .++..+|+|.|+|.|.|..|....++.|.|.     .||.+       ....+..+.+.|...+.|  .++|+++|..+
T Consensus       352 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l  425 (570)
T 3b43_A          352 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-----EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL  425 (570)
T ss_dssp             ESCCGGGCEEEEEEEEBTTBCCEEEEEECEE-----CCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEEC
T ss_pred             CCCCcccCEEEEEEEEeCCCEEEEEEEEEec-----CCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEEC
Confidence            9999999999999999999999888999888     44443       344577788888776554  89999998653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.98  E-value=1.3e-31  Score=200.44  Aligned_cols=223  Identities=23%  Similarity=0.407  Sum_probs=159.7

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCC-CCCeeEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSA-RHSGNYSC   84 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~-~d~G~Y~C   84 (243)
                      ..||.+...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+... +....... .....|.|.+++. +|+|.|+|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEE-CSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEE-EeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            4688888888889999999999999995 7788899999999888553 33332222 2237899999998 99999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCC-------ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe-eEE
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPK-------IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVS  156 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~  156 (243)
                      .+.+..+..+..+.|.|..++.       +...+ ....+..|+.+.|.|.+ .|.|.+.+.|++++..+...... ...
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~-~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP-QLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECC-CCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCC-ccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEE
Confidence            9999988888888899886532       22211 22346789999999999 68999999999999988653221 111


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcceeee-EEEEEEeecCCCCCee-------eeeccceeeeccCccccc--
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSFE--  226 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~--  226 (243)
                      .  ...+.|.|.++..+|+|.|+|.|.|..|..... ..+.|...  ..+|.+       .+..+..+.+.|...+.|  
T Consensus       160 ~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~--~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p  235 (304)
T 2yd9_A          160 Q--LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ--NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP  235 (304)
T ss_dssp             E--CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC--CEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC
T ss_pred             e--CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee--ccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC
Confidence            1  113479999999999999999999999876543 55555421  123333       345677788899876554  


Q ss_pred             ccceEEeCCee
Q psy11132        227 QDSWMIDNENY  237 (243)
Q Consensus       227 ~~~W~~~~~~~  237 (243)
                      .+.|+++|..+
T Consensus       236 ~v~W~~~~~~l  246 (304)
T 2yd9_A          236 YVKWMQGAEDL  246 (304)
T ss_dssp             EEEEEETTEEC
T ss_pred             EEEEEECCEEC
Confidence            89999998654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=209.66  Aligned_cols=220  Identities=15%  Similarity=0.146  Sum_probs=162.0

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe-----eeeceEEEEeecCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-----DQYNSMLVIDSVSA   76 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~   76 (243)
                      +.|.+..+|.+  .+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...........     ......|.|.+++.
T Consensus       222 ~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  299 (527)
T 3qs9_E          222 FTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR  299 (527)
T ss_dssp             EEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCG
T ss_pred             EEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCc
Confidence            45667777766  445678899999999999954788889999999988765433322111     11245799999999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCCCcccccc-CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  155 (243)
                      +|+|.|+|.|.|.   ....+.|.|..+|.+...+. ....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....... 
T Consensus       300 ~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~-  374 (527)
T 3qs9_E          300 NDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGL-  374 (527)
T ss_dssp             GGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCCBC-
T ss_pred             ccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCcccc-
Confidence            9999999999887   56677888887776543332 12457789999999999 689999999999999886543321 


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCccccc--ccceEEe
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFE--QDSWMID  233 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~  233 (243)
                          .....|.|.++..+|+|.|+|.|.|..|....++.|.|.     .||.+...+... .+.|...+.|  .+.|+++
T Consensus       375 ----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~-----~~P~i~~~~~~~-~l~C~a~g~P~p~i~W~~~  444 (527)
T 3qs9_E          375 ----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR-----RKPQVLAEASAS-QASCFSDGYPLPSWTWKKC  444 (527)
T ss_dssp             ----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------CCCEEEECCCCE----EEEECSSCCEEEEECC
T ss_pred             ----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe-----cCCeEEEeCCCC-EEEEEEEEEcCCeEEEEEC
Confidence                124678999999999999999999999999889999998     888887766544 4688776654  8999988


Q ss_pred             CCeeE
Q psy11132        234 NENYV  238 (243)
Q Consensus       234 ~~~~~  238 (243)
                      +....
T Consensus       445 ~~~~~  449 (527)
T 3qs9_E          445 SDKSP  449 (527)
T ss_dssp             C----
T ss_pred             CCCcC
Confidence            76543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=2.5e-30  Score=192.20  Aligned_cols=225  Identities=19%  Similarity=0.289  Sum_probs=162.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ||.+...+....+.+|+.+.|.|.+.+..+.+.+.|++ +|..+.. ..++.+.........|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            66777778888899999999999996333468999999 7776654 344444433334678999999999999999999


Q ss_pred             EeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         87 RNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        87 ~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      .+..+. .+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........  ....|
T Consensus        82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~L  157 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVL--SNNYL  157 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECCSEEEECCSS-EEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTEEEC--TTSCE
T ss_pred             EcCCCCeeEEEEEEEeeccccccCCCCc-ccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceEEEc--cCCcE
Confidence            998754 456778888777665543322 457789999999999 5889999999999988754322221111  13569


Q ss_pred             EEeecCCCCCeeEEEEEEccCcce--eeeEEEEEEeecC--C--CCCeeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQA--RYSSKLQVKGNLN--R--LPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~~--~~~~~l~v~~~~~--~--~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .|.++..+|+|.|+|.|.|..+..  ...+.+.|...+.  .  .+....+..+..+.+.|...+.|  .+.|+++|..+
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~  237 (291)
T 1qz1_A          158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI  237 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             EEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEEC
Confidence            999999999999999999976443  3445566652111  0  01122345577888999876554  89999998754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.97  E-value=5.9e-30  Score=179.64  Aligned_cols=188  Identities=20%  Similarity=0.244  Sum_probs=150.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++...........|.|.+++.+|+|.|+|.+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEE-CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEe-ecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            578888888888999999999999995 7788899999999988653 34444433333458999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCcccccc----CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAF----PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      .+..+.....+.|.|..+|.+.....    ....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... ....
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~-~~~~  159 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV-TRSF  159 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSSSSCEEEE-CSSE
T ss_pred             EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecCCCEEEEE-cCCc
Confidence            99888878888888887665432211    11345679999999999 588999999999999887655444332 2335


Q ss_pred             eEEEEee-cCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        163 SLLSINS-VSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       163 ~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..|.|.+ +..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            7899999 99999999999999999998888888876

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.97  E-value=1.8e-29  Score=179.17  Aligned_cols=186  Identities=25%  Similarity=0.414  Sum_probs=148.1

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec-CCCceEEEEeeeeceEEEEeecCC-CCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD-NSAALSITHVDQYNSMLVIDSVSA-RHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~   85 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+. ...++...........|.|.+++. .|+|.|+|.
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEE-CSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEc-cCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            588888888889999999999999995 77888999999999886 445555444333347899999999 999999999


Q ss_pred             EEeCCCc-ceeEEEEEEEcCCC-------ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         86 VRNMVAE-DTQVQRLIVNVPPK-------IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        86 ~~~~~~~-~~~~~~l~v~~~p~-------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      +.+..+. .+..+.|.|...+.       +...+ ....+..|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~  161 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMSNPRYSLK  161 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC-CCEEEETTCCEEECCEE-ECSSCCEEEEEETTEECCTTSTTEEEE
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC-CceEeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccCCCeEEcc
Confidence            9998887 77788888887532       22211 22345679999999999 689999999999999887643322211


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceeee-EEEEEEee
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVKGN  200 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~l~v~~~  200 (243)
                          .+.|.|.++..+|+|.|+|.|.|..|..... +.|.|...
T Consensus       162 ----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          162 ----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             ----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence                3489999999999999999999999988765 88888843

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.97  E-value=1.7e-29  Score=179.43  Aligned_cols=189  Identities=27%  Similarity=0.389  Sum_probs=143.4

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeec-CCCCCeeEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-SARHSGNYSCT   85 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~   85 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.++ +.+|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEe-eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            4678888888888899999999999996 778889999999998876543332222223567999999 59999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCC-------CccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--eeEE
Q psy11132         86 VRNMVAEDTQVQRLIVNVPP-------KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVS  156 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~  156 (243)
                      +.+..+.....+.|.|...+       .+... .....+..|+.+.|.|.+ .|.|.+.+.|++++..+.....  ....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~  160 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMG-PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIKQ  160 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGGGCCTTCCEEEEC-CCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC------CCEEE
T ss_pred             EEcCCCcEEEEEEEEEeccCccCCCcceeecC-CcceeEecCCCEEEEEEe-cCCCCCeEEEEECCccccCcCCCceEEE
Confidence            99998887788888887642       22211 122346679999999999 5899999999999998875421  1111


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                      ......+.|.|.++..+|+|.|+|.|.|..|... ..+.+.+.
T Consensus       161 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            1223357899999999999999999999999875 45778777

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=9.6e-29  Score=183.05  Aligned_cols=192  Identities=24%  Similarity=0.482  Sum_probs=157.5

Q ss_pred             eeEEEecCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132          2 LVIFSTVPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus         2 ~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      +.|.|..+|.+... .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+....... ....|.|.+++.+|+|
T Consensus        91 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G  168 (284)
T 2rik_A           91 AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSG  168 (284)
T ss_dssp             EEEEEECCCEEEECCCSEEEEETTCCEEEEEEEE-SSSCCEEEEEETTEECCCSSSEEEEEET-TEEEEEECSCCGGGCE
T ss_pred             EEEEccCCCcccccCCCceEecCCceEEEEEEEe-eeCCCEEEEEECCEECcCCCcEEEEEcC-CEEEEEECCCCcccCE
Confidence            45778888876655 3345688999999999995 7788899999999998876655543322 3578999999999999


Q ss_pred             eEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         81 NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      .|+|.+.+..+.....+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.......... ..
T Consensus       169 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~  245 (284)
T 2rik_A          169 DYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-VETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIMS-EN  245 (284)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCBCCSCCCC-EEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECBTTTEEEEE-ET
T ss_pred             EEEEEEEcCCCceeEEEEEEEecCCcceeCCCc-ceecCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEE-cC
Confidence            999999999998888899999988876654432 456789999999999 689999999999999988766554433 23


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       246 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          246 FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            35689999999999999999999999999988888875

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=2.7e-30  Score=206.87  Aligned_cols=223  Identities=16%  Similarity=0.212  Sum_probs=167.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCce-eEEEECCeee--cCCCceEEEE--eeeeceEEEEeecCCCCCeeE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLT-IKWLKDGRYL--DNSAALSITH--VDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~-v~W~~~~~~~--~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+. +.|++++..+  ..........  .......|.|.+++.+|+|.|
T Consensus       210 ~~p~i~~~~~~~~v~~G~~v~L~C~~~-g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  288 (524)
T 2ec8_A          210 AVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF  288 (524)
T ss_dssp             SCCEEECSCSEEEEETTSCEEEEEEEE-ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEE
T ss_pred             CCCcEEecCCcceEEcCCcEEEEEEEe-cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEE
Confidence            678888877778899999999999996 666554 9999999873  2222211110  112357899999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEcCCCcccccc--CCCCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCeeEEeec
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNVPPKIESFAF--PFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLD  159 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~  159 (243)
                      +|.+.|..+.....+.|.|..+|.+...+.  ....+..|+.+.|.|.+ .|.|.+. +.|++++..+............
T Consensus       289 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~  367 (524)
T 2ec8_A          289 MCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFTDKWEDYPKSEN  367 (524)
T ss_dssp             EEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEE-EEESCCCEEEEESSSCBCSSSBCCEESCCS
T ss_pred             EEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEE-eecCCCcEEEEEECCeeccCCccceeEEcc
Confidence            999999999888889999998887665432  12457899999999999 6889888 9999999988765422211111


Q ss_pred             c----ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeec--cceeeeccCccccc--ccceE
Q psy11132        160 S----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF--SQASYMSTSYYSFE--QDSWM  231 (243)
Q Consensus       160 ~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~--~~~W~  231 (243)
                      .    ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.     .+|.+...+  ... .+.|...+.|  .++|+
T Consensus       368 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~-----~~P~i~~~~~~~~g-~l~C~~~g~P~p~i~W~  441 (524)
T 2ec8_A          368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN-----TKPEILTYDRLVNG-MLQCVAAGFPEPTIDWY  441 (524)
T ss_dssp             SSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC-----EEEEEEEEECCSSS-CEEEEEEEESCCEEECC
T ss_pred             CCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe-----cCCeEeecccCcCc-EEEEEEEeecCCEEEEE
Confidence            1    35789999999999999999999999998888999888     566655433  112 7888776654  89999


Q ss_pred             EeCCeeE
Q psy11132        232 IDNENYV  238 (243)
Q Consensus       232 ~~~~~~~  238 (243)
                      ++|..+.
T Consensus       442 ~~~~~~~  448 (524)
T 2ec8_A          442 FCPGTEQ  448 (524)
T ss_dssp             CC-----
T ss_pred             ECCCccc
Confidence            9986653

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.97  E-value=9.9e-30  Score=178.03  Aligned_cols=186  Identities=22%  Similarity=0.368  Sum_probs=146.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  +..... ......|.|.+++..|+|.|+|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISF-SDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEESSSBCCTTTSTTCEEEE-ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEE-ecCCCEEEEEECCEEcccccCCceEEEe-CCCEEEEEECCCCcccCEEEEEE
Confidence            467777777888899999999999995 77777999999998886543  333322 22357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         86 VRNMVAEDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      +.+..+.....+.|.|..   +|.+.... ....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... .+..
T Consensus        82 ~~n~~~~~~~~~~l~v~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~  158 (194)
T 2a38_A           82 ATNGSGQATSTAELLVKAETAPPNFVQRL-QSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQISQ-EGDL  158 (194)
T ss_dssp             EEETTEEEEEEEEEEEECCCEEEEEEECC-CCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEE-ETTE
T ss_pred             EEcCCceEeEEEEEEEccCCCCCEEEeCC-ccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECCCCCcEEEEE-cCCE
Confidence            999888777777888874   33332222 22457789999999999 688999999999999988765554433 2334


Q ss_pred             eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            579999999999999999999999998888888763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=177.31  Aligned_cols=188  Identities=20%  Similarity=0.302  Sum_probs=152.0

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+....... ....|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEE-EESCCEEEEEETTEEECCCSSEEEEESS-SEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEe-cCCCCEEEEEECCEECCCCccEEEEeCC-CEEEEEEecCCccCCEEEEEEE
Confidence            4578888888888999999999999995 6777899999999998877666554332 2458999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCcccccc--CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAF--PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL  164 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  164 (243)
                      .+..+.....+.|.|..+|.......  ....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... ......
T Consensus        83 ~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~  160 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITIEN-TEHYTH  160 (197)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEE-CSSEEE
T ss_pred             ECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCCCCceEEEE-cCCEEE
Confidence            99888877788888877665443211  11345689999999999 589999999999999988766554433 233478


Q ss_pred             EEEeecCC-CCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        165 LSINSVSA-AHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       165 l~i~~~~~-~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |.|.++.. +|+|.|+|.|.|..|.....+.|.|.
T Consensus       161 L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          161 LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             EEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            99999985 89999999999999999999988887

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.97  E-value=1.8e-28  Score=171.16  Aligned_cols=179  Identities=22%  Similarity=0.313  Sum_probs=141.0

Q ss_pred             cCCCccCCCCCccccc-CCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNV-GERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+...+ ...+.+ |+.+.|.|.+. +.+.  +.+.|++++..+.......      ....|.|.+++.+|+|.|+|
T Consensus         2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C   73 (190)
T 2wv3_A            2 NEPRIVTSE-EVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRKNA------SNMEYRINKPRAEDSGEYHC   73 (190)
T ss_dssp             -CCEEEECC-CEECCCSSSCEEEEEEEE-ECSSCEEEEEEEETTEECTTCCBCC------SEEEEEESSCCGGGCEEEEE
T ss_pred             CCCcccccc-eEEEccCCceEEEEEEec-cCCCCceEEEEEECCEECcccceEe------ccEEEEEecCCcccCEEEEE
Confidence            477777644 455666 99999999996 5554  7999999999887654322      25789999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe--CCEecC---CCCCeeEEeec
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPLS---PRFPVNVSDLD  159 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~---~~~~~~~~~~~  159 (243)
                      .+.+. +.....+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+.+.|++  ++..+.   ....... ...
T Consensus        74 ~~~n~-~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~-~~~  149 (190)
T 2wv3_A           74 VYHFV-SAPKANATIEVKAAPDITGHKRS-ENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEEISNSSGRFFI-INK  149 (190)
T ss_dssp             EEEET-TEEEEEEEEEEECCCEEEEECSE-EEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEECCCTTSCEEE-EEC
T ss_pred             EEEeC-CcccccEEEEEecCCcccccCCc-ceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceeeeecCCCeEEE-ecC
Confidence            99998 77888889999988877654332 457789999999999 689999999999  777654   2222222 223


Q ss_pred             cceeEEEEeecC-CCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        160 SFSSLLSINSVS-AAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       160 ~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ...+.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus       150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            335689999999 799999999999999999888888876

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.97  E-value=1.6e-28  Score=172.13  Aligned_cols=180  Identities=18%  Similarity=0.278  Sum_probs=141.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc--eEEEEeee------eceEEEEeecCCCCC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVDQ------YNSMLVIDSVSARHS   79 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~------~~~~l~i~~~~~~d~   79 (243)
                      .||.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.....  ..+.....      ....|.|.+++..|+
T Consensus         1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            3788888888999999999999999953677789999999998876532  22221111      046899999999999


Q ss_pred             eeEEEEEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEe
Q psy11132         80 GNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        80 G~Y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      |.|+|.+.+..+.. +..+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+ .+.|++++..+......    
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~~----  154 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED-RTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAPGH----  154 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCC-EEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSSTTS----
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCc-EEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCCCc----
Confidence            99999999977653 44588888888766543332 567789999999999 588988 99999999988765432    


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQV  197 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v  197 (243)
                        .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 --~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 --GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             --SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence              235779999877  78999999999999885 6888877

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=8.7e-29  Score=183.85  Aligned_cols=223  Identities=17%  Similarity=0.259  Sum_probs=160.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+....+.+|+.+.|.|.+. +.|. .+.|++ ++..+....++...... ....|.|.+++.+|+|.|+|.+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~-~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIISTQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEE-SCCS-EEECBCTTCCBCCCBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEe-CCCC-ceEEECCCCcCccCCCcEEEecCC-CEEEEEEccCCcccCEEEEEEE
Confidence            578888888888999999999999996 6564 899999 67777666666544322 2468999999999999999999


Q ss_pred             EeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         87 RNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        87 ~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      .+..+.. +..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........  ....|
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~L  155 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFREVVSP-QEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAML--ANNNL  155 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCSCCCS-EEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEEEC--TTSCE
T ss_pred             ecccCceEEEEEEEEecCCcceEeCCCC-hhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEEEc--cCCCE
Confidence            9987764 55677888877765543332 456789999999999 6889999999999987764222111111  13469


Q ss_pred             EEeecCCCCCeeEEEEEEccCccee--eeEEEEEEeecCCC-CC---eeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQAR--YSSKLQVKGNLNRL-PP---SYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~l~v~~~~~~~-~p---~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .|.++..+|+|.|+|.+.|..+...  ..+.+.+...+... ++   ...+..+..+.+.|.....|  .+.|+++|..+
T Consensus       156 ~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~  235 (291)
T 2wim_A          156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI  235 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEEC
T ss_pred             EEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEEC
Confidence            9999999999999999999875443  44555555222111 11   22344577889999887654  89999998654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=195.60  Aligned_cols=224  Identities=14%  Similarity=0.200  Sum_probs=159.8

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..+|.+... .+..+.+|+.+.|.|.+.+..|.+.+.|++++..+....++.+.   .....|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~   80 (317)
T 2y25_A            5 FTGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK---DGICTLLITEFSKKDAGIYEVIL   80 (317)
T ss_dssp             SSCCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC--------CCEEEEETTCCSTTCSCEEEEE
T ss_pred             cCCCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE---CCeEEEEEccCCcccCeEEEEEE
Confidence            457777643 35789999999999998644477899999999998866554433   23578999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecC----------CCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG----------DPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----------~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      .+..+.....+.|.|..+|.+...... ..+..|+.+.|.|.+ .+          .|.+.+.|++++..+.........
T Consensus        81 ~n~~g~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~~~l~c~~-~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  158 (317)
T 2y25_A           81 KDDRGKDKSRLKLVDEAFKELMMEVCK-KIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG  158 (317)
T ss_dssp             ESSSCEEEEEECCSTHHHHHHHHHHHH-HHHTCBCCCEEEECS-SEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEE
T ss_pred             ECCCCcEEEEEEEEEecCccccccCCc-eecccCCCeEEEeec-cccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEe
Confidence            998887665555555443322211111 234567777777766 34          789999999999998866554433


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee---------------cCC--------CCCeeeeecc
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN---------------LNR--------LPPSYTLVFS  213 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~---------------~~~--------~~p~~~~~~~  213 (243)
                       .......|.|.++..+|+|.|+|.|.|..|....++.+.+...               ...        .|....+..+
T Consensus       159 -~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          159 -VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             -ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             -ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence             2333567999999999999999999999998887777764310               001        1223556677


Q ss_pred             ceeeeccCcccc--cccceEEeCCee
Q psy11132        214 QASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       214 ~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      +.+.+.|...+.  +.+.|+++|..+
T Consensus       238 ~~~~l~C~~~g~p~p~i~W~~~g~~~  263 (317)
T 2y25_A          238 KALNLTCNVWGDPPPEVSWLKNEKAL  263 (317)
T ss_dssp             SBBCEEEEEECSSCCEEEEEESSSEE
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEeC
Confidence            888889977654  489999998765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=7e-29  Score=192.44  Aligned_cols=230  Identities=22%  Similarity=0.256  Sum_probs=171.0

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.+..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+........... .....|.|.+++.+|+|.
T Consensus       114 ~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~  191 (403)
T 3laf_A          114 AKVMVAGPLRFLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVV-LPSGALQISRLQPGDSGV  191 (403)
T ss_dssp             EEEEECCCCEECSCCCCEEEETTSCEEECCCEE-CSSCCEEEEEESSSBCCCCTTCCSEEE-CTTSCEEECSCCGGGCEE
T ss_pred             EEEEecCCCccccCCCcEEEEcCCeEEEEEEEc-ccCCCeEEEEECCEeccccCCceEEEE-cCCceEEEcccccccCEE
Confidence            456777888888888888899999999999985 778889999999988743221111111 124679999999999999


Q ss_pred             EEEEEEeCCCc-ceeEEEEEEEcCCCcccc-----ccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE
Q psy11132         82 YSCTVRNMVAE-DTQVQRLIVNVPPKIESF-----AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        82 Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~-----~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  155 (243)
                      |+|.+.+..+. ....+.+.|...|.....     ......+.+|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus       192 Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~  270 (403)
T 3laf_A          192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLRSKKYS  270 (403)
T ss_dssp             EEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCSSSSEE
T ss_pred             EEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEECCeeccCCCceEE
Confidence            99999998765 445677888776654211     1122345689999999999 5888899999999998875443222


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCccccc--ccceE
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSFE--QDSWM  231 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~  231 (243)
                      ..   ..+.|.|.++..+|+|.|+|.|.|..|.....+.+.|...+  ...|....+..+..+.+.|...+.+  .+.|+
T Consensus       271 ~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~  347 (403)
T 3laf_A          271 LL---GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM  347 (403)
T ss_dssp             EE---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred             EC---CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEE
Confidence            21   13579999999999999999999999988888888887322  1123334455677888999876554  89999


Q ss_pred             EeCCee
Q psy11132        232 IDNENY  237 (243)
Q Consensus       232 ~~~~~~  237 (243)
                      ++|..+
T Consensus       348 ~~g~~~  353 (403)
T 3laf_A          348 KNGDVV  353 (403)
T ss_dssp             ETTEEC
T ss_pred             ECCEEC
Confidence            998754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.96  E-value=1.9e-28  Score=171.04  Aligned_cols=185  Identities=21%  Similarity=0.359  Sum_probs=140.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeec-CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLD-NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      |+.+...+....+.+|+.+.|.|.+.+..+.+.+.|++ ++..+. ...++...........|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            55666677788899999999999996333477999999 888776 3445555444344688999999999999999999


Q ss_pred             EeCC-CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         87 RNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        87 ~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      .+.. +..+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .+.|.+.+.|++++..+............  ...|
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~L  157 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYL  157 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCSS-EECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECT--TSCE
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCCc-EeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceEEEec--CCeE
Confidence            9987 45667788888877766544333 567899999999999 58999999999999988643221111111  2469


Q ss_pred             EEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      .|.++..+|+|.|+|.|.|..+.......+.|
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            99999999999999999999876655555544

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=171.98  Aligned_cols=176  Identities=21%  Similarity=0.269  Sum_probs=138.5

Q ss_pred             cccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132         21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      ..+++.+.|.|.+.+..|.+.+.|++++..+....++...... ....|.|.+++.+|+|.|+|.+.+..+.....+.|.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC-CEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence            3467888899988644567899999999999877776554433 246799999999999999999999877766666655


Q ss_pred             EEc--------------------CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132        101 VNV--------------------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus       101 v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      +..                    .|.+.........+..|+.+.|.|.+ .|.|.+.+.|++++..+.............
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~  171 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAG  171 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEETT
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEEcCC
Confidence            432                    22222222222456789999999999 599999999999999998777666655545


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       172 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            56789999999999999999999999999888888887

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.96  E-value=2.6e-29  Score=175.57  Aligned_cols=183  Identities=26%  Similarity=0.405  Sum_probs=145.3

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++...   .....|.|.+++.+|+|.|+|
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C   79 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFDTRYSIR---ENGQLLTILSVEDSDDGIYCC   79 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEE-EESCCEEEEEETTEECCTTCTTEEEE---GGGTEEEESSCCGGGCEEEEE
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCC-CCCCCeEEEEECCEEccccCccEEEc---CCccEEEEcCCCcccCeEEEE
Confidence            44678888877788899999999999995 677779999999988865 3333322   124579999999999999999


Q ss_pred             EEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecccee
Q psy11132         85 TVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS  163 (243)
Q Consensus        85 ~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  163 (243)
                      .+.+..+. ....+.|.|..+|.+...+. ...+..|+.+.|.|.+ .+.|.+.+.|++++..+..........    .+
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~----~~  153 (192)
T 2iep_A           80 TANNGVGGAVESCGALQVKMKPKITRPPI-NVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRENSRIAVLE----SG  153 (192)
T ss_dssp             EEECSSSCCEEEEEEEEEEEEEEEEECCC-CEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCCSSEEECT----TS
T ss_pred             EEEcCCCceeEeEEEEEEEeCCccccCCc-ceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEccCCCcEEEec----CC
Confidence            99998776 45667788877776554332 2456789999999999 588999999999999887665443321    34


Q ss_pred             EEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132        164 LLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  198 (243)
Q Consensus       164 ~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~  198 (243)
                      .|.|.++..+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus       154 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            69999999999999999999999987 456888888

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=9.7e-28  Score=185.22  Aligned_cols=221  Identities=19%  Similarity=0.263  Sum_probs=161.5

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--CeeecC-----CCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLDN-----SAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+.. +.+..+.+|+.+.|.|.+. +.|.+.+.|+++  +..+..     ..++.+... .....|.|.+++.+|+|.
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~-g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~   77 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-HGSSSLHIKDVKLSDSGR   77 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEE-CSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-SSEEEEEEESCCGGGCEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEee-cccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-CCcceEEEcccChhhCEE
Confidence            456665 4456788899999999995 888889999999  887764     344443322 235789999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC-eeEEeecc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDS  160 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~  160 (243)
                      |+|.+.|..|..+..+.|.|..+|.+.... ....+..|+.+.|.|.+ .|.|.+.+.|++++..+..... ........
T Consensus        78 Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~  155 (389)
T 2jll_A           78 YDCEAASRIGGHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKTYSTG  155 (389)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEEEECCSC-CEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEEEECS
T ss_pred             EEEEEEeCCCCcceEEEEEEEeCCEEecCc-ceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEEeccC
Confidence            999999999988888999999887765422 21245789999999999 5889999999999999876542 12222233


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCC-eeee--eccceeeeccCcc----ccc----ccc
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP-SYTL--VFSQASYMSTSYY----SFE----QDS  229 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p-~~~~--~~~~~~~~~~~~~----~~~----~~~  229 (243)
                      ....|.|.++..+|+|.|+|.|.|..|.....+.+.+...+  .+| .+..  .....+.+.|..-    ..+    .+.
T Consensus       156 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P--~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~  233 (389)
T 2jll_A          156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP--SSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD  233 (389)
T ss_dssp             SCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC--CCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEE
T ss_pred             CEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC--CCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEE
Confidence            45789999999999999999999999998877777765332  344 2222  2234555555421    111    567


Q ss_pred             eEEeCCe
Q psy11132        230 WMIDNEN  236 (243)
Q Consensus       230 W~~~~~~  236 (243)
                      |.+++..
T Consensus       234 ~~~~~~~  240 (389)
T 2jll_A          234 VKEVASE  240 (389)
T ss_dssp             EEETTCS
T ss_pred             EEECCCc
Confidence            7776653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=9e-28  Score=179.56  Aligned_cols=191  Identities=19%  Similarity=0.239  Sum_probs=151.5

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++...........|.|.+++.+|+|.|+|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEE-CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEe-CCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            478888888889999999999999995 7788899999999988653 34444333333468999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccc----cCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFA----FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~----~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      .|..+..+..+.|.|..+|.+....    .....+..|+.+.|.|.+ .|.|.+.+.|++++..+.......... ....
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~-~~~~  159 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV-TRSF  159 (305)
T ss_dssp             EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBCCSSSSCEEEE-CSSE
T ss_pred             EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEECCCCCcEEEEE-cCCc
Confidence            9998887888888887665543211    122345679999999999 588999999999998887655444332 2235


Q ss_pred             eEEEEee-cCCCCCeeEEEEEEccCcceeeeEEEEEEeec
Q psy11132        163 SLLSINS-VSAAHSGEYTCVASNTAAQARYSSKLQVKGNL  201 (243)
Q Consensus       163 ~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~  201 (243)
                      ..|.|.+ +..+|.|.|+|.|.|..|....++.+.|.+.+
T Consensus       160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  199 (305)
T 2nzi_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP  199 (305)
T ss_dssp             EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC
Confidence            6789998 99999999999999999999888888887543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=3.5e-30  Score=195.04  Aligned_cols=210  Identities=24%  Similarity=0.344  Sum_probs=90.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|+.+.|.|.+.+..|.+.+.|++++..+....++...     ...|.|.+++.+|+|.|+|.+.+. +....
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~   88 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-----PQRLQVLNASHEDSGAYSCRQRLT-QRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec-----cceEEEeecccccCEEEEEEEEeC-CeEEE
Confidence            667889999999999999644466799999999888765554332     568999999999999999999988 66666


Q ss_pred             EEEEEEEcCCC----------------------ccccc---cCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC
Q psy11132         96 VQRLIVNVPPK----------------------IESFA---FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  150 (243)
Q Consensus        96 ~~~l~v~~~p~----------------------~~~~~---~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  150 (243)
                      .+.|.|...+.                      +....   .....+..|+.+.|.|.+ .|.|.+.+.|++++..+...
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~  167 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGE  167 (334)
T ss_dssp             ------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC-CCSSCCEEECCBTTBCCCTT
T ss_pred             EEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc-cCCCCCeEEEEECCEECccc
Confidence            77777765432                      11100   001235579999999999 58899999999999887755


Q ss_pred             CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCC-------CCCeeeeeccceeeeccCcc
Q psy11132        151 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR-------LPPSYTLVFSQASYMSTSYY  223 (243)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~-------~~p~~~~~~~~~~~~~~~~~  223 (243)
                      ..............|.|.++..+|+|.|+|.|.|..|.....+.|.|......       .|....+..++.+.+.|...
T Consensus       168 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~  247 (334)
T 1ry7_B          168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY  247 (334)
T ss_dssp             SSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB
T ss_pred             ccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe
Confidence            43322222233568999999999999999999999998888888888753221       12334566788889999876


Q ss_pred             ccc--ccceEE
Q psy11132        224 SFE--QDSWMI  232 (243)
Q Consensus       224 ~~~--~~~W~~  232 (243)
                      ..+  .+.|++
T Consensus       248 g~p~p~v~W~~  258 (334)
T 1ry7_B          248 SDAQPHIQWLK  258 (334)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            554  899999

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=172.89  Aligned_cols=180  Identities=11%  Similarity=0.142  Sum_probs=132.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+... ....+.+|+.+.|.|.+..+.|.+.++|+++|..+....++.+.... .+...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            3444443 35678999999999998656788999999999999877766554422 234579999999999999999999


Q ss_pred             eCCCcceeEEEEEEE---------------------cCCCccccccCCCCCCCCCcEEEEEEeecCC-CCCEEEEEeCCE
Q psy11132         88 NMVAEDTQVQRLIVN---------------------VPPKIESFAFPFDGLPEGARTRVICGVTHGD-PPLTIRWLKDGK  145 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~  145 (243)
                      |  +.......+.+.                     .+|.+.... . ..+.+|+.+.|.|.+ .|. |.+.+.|++++.
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~-~~v~~g~~v~l~C~v-~g~~P~p~i~W~k~g~  156 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-S-WEVTGECNVLLKCKV-ANIKKETHIVWYKDER  156 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-E-EEEETTTEEEEEEEE-ESCCTTCEEEEEETTE
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-C-cEEcCCCcEEEEEEE-eCCCCCCEEEEEECCE
Confidence            8  443333333221                     123222211 1 456789999999999 577 899999999999


Q ss_pred             ecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        146 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      .+.....+.   .......|.|.++..+|+|.|+|.|.|..|....++.|..
T Consensus       157 ~l~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          157 EISVDEKHD---FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EECCCCCCC---CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ECCCCCceE---cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            987654321   1222457999999999999999999999999988887764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.96  E-value=1e-27  Score=166.14  Aligned_cols=176  Identities=25%  Similarity=0.372  Sum_probs=136.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+...+....+.+|+++.|.|.+. +.|.+.+.|++++..+....+....... .....|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEE-SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEe-CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            56777777888899999999999996 6788899999999988776544333221 224789999999999999999999


Q ss_pred             eCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         88 NMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        88 ~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      +..+. .+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .+.|.+ .+.|++++..+.....        ....|
T Consensus        81 ~~~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~--------~~~~L  150 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAP--------SPSVL  150 (182)
T ss_dssp             SCTTCEECCCEEEEEECSCEEEECCCC-EEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEE--------SSEEE
T ss_pred             cCCCcEEEEEEEEEEecCCeEEecCcc-eEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCCCC--------CceEE
Confidence            87664 556788999888876554333 567889999999999 588888 9999999998865421        35778


Q ss_pred             EEeecCCCCCeeEEEEEEccCccee-eeEEEEE
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQAR-YSSKLQV  197 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v  197 (243)
                      .|.++  +|+|.|+|.|.|..|... ..+.|.|
T Consensus       151 ~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          151 NVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            89887  589999999999999875 4777766

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=6.4e-28  Score=202.41  Aligned_cols=228  Identities=24%  Similarity=0.380  Sum_probs=174.0

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC-CCCCe
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-ARHSG   80 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G   80 (243)
                      ..|.|..+|.+... ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+....    .+..|.|.++. ..|+|
T Consensus       520 ~~l~V~~~p~~~~~-~~~~v~~G~~v~l~C~~~-g~p~~~i~W~k~~~~l~~~~~~~~~----~~~~l~i~~v~~~~d~G  593 (816)
T 3dmk_A          520 AKLNVYGLPYIRQM-EKKAIVAGETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVF----PNGTLIIENVERNSDQA  593 (816)
T ss_dssp             EEEEECSSCEECCC-CCEEEETTCCEEEECCEE-CSSEEEEEEEETTEESCCSTTEEEC----TTSEEEESSCCHHHHCE
T ss_pred             EEEEEecCCeeEcc-CCeEEecCCeEEEEEEec-CCCCCEEEEEECCeEcccCCceEEe----cCCeEEEEecCccccCE
Confidence            35677778866543 456688999999999995 7788899999999988766554332    25679999998 58999


Q ss_pred             eEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec
Q psy11132         81 NYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD  159 (243)
Q Consensus        81 ~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  159 (243)
                      .|+|.+.|..+. ....+.+.+..+|.+.........+..|+.+.|.|.+..+.+++.+.|+++|..+............
T Consensus       594 ~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~  673 (816)
T 3dmk_A          594 TYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG  673 (816)
T ss_dssp             EEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEET
T ss_pred             EEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcC
Confidence            999999999885 4556778888877765544344567789999999999545556699999999988765555544444


Q ss_pred             cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCccccc--ccceEEeCC
Q psy11132        160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNE  235 (243)
Q Consensus       160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~  235 (243)
                      ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+  ...|....+..+..+.+.|...+.|  .++|++++.
T Consensus       674 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~  753 (816)
T 3dmk_A          674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG  753 (816)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECS
T ss_pred             CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCC
Confidence            556889999999999999999999999999888888887321  1122233445577788888876654  899999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=9.3e-28  Score=179.97  Aligned_cols=219  Identities=12%  Similarity=0.085  Sum_probs=159.7

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      ...+.+|+.+.|.|....+.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.+..+... .+
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~   87 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG-NKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SY   87 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEESSSCCCCE-EE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC-CEEEEEECcCCccCCEEEEEEEEeCCCcEE-EE
Confidence            4668899999999988666788899999999999877776655422 247899999999999999999998877543 45


Q ss_pred             EEEEEc------------CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-ccceeE
Q psy11132         98 RLIVNV------------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFSSL  164 (243)
Q Consensus        98 ~l~v~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~  164 (243)
                      .+.|..            +|.+.........+.+|+.+.|.|.+..+.|.+.+.|++++..+.....+..... ......
T Consensus        88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~  167 (312)
T 2y23_A           88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE  167 (312)
T ss_dssp             EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEE
T ss_pred             EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEE
Confidence            555543            5554443322356789999999999944889999999999999887665544432 234567


Q ss_pred             EEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe--------------ecCCCCCe------eeeeccceeeeccCccc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG--------------NLNRLPPS------YTLVFSQASYMSTSYYS  224 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~--------------~~~~~~p~------~~~~~~~~~~~~~~~~~  224 (243)
                      |.|.++..+|+|.|+|.|.+..+.......+....              .....+|.      ..+..+..+.+.|....
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~  247 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVAN  247 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEES
T ss_pred             EEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcC
Confidence            99999999999999999987544433333321000              00012232      45667888899998766


Q ss_pred             c--c-ccceEEeCCeeE
Q psy11132        225 F--E-QDSWMIDNENYV  238 (243)
Q Consensus       225 ~--~-~~~W~~~~~~~~  238 (243)
                      .  + .+.|+++|..+.
T Consensus       248 ~p~~~~v~W~~~g~~~~  264 (312)
T 2y23_A          248 IKKETHIVWYKDEREIS  264 (312)
T ss_dssp             CCSSCEEEEEETTEEEE
T ss_pred             CCCCCEEEEeeCCEECC
Confidence            4  4 899999998765

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.5e-28  Score=173.82  Aligned_cols=183  Identities=25%  Similarity=0.329  Sum_probs=138.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|+|.|+|.+.+..+....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEE-CSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcceEEcCCCeEEEEEEec-CCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence            3457789999999999996 778889999999998876443322222333678999999999999999999998888777


Q ss_pred             EEEEEEEcCCCc----cccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe----CCEecCCCCCeeEEe-------ecc
Q psy11132         96 VQRLIVNVPPKI----ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNVSD-------LDS  160 (243)
Q Consensus        96 ~~~l~v~~~p~~----~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~~~~~~-------~~~  160 (243)
                      .+.|.|...+..    .........+..|+.+.|.|.+ .+.|.+.+.|++    ++..+..........       ...
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  179 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE  179 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence            888888763321    1111222457789999999999 688999999999    777776543322111       112


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN  200 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~  200 (243)
                      ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.+.
T Consensus       180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence            3567999999999999999999999999999999998843

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.96  E-value=1.8e-28  Score=172.28  Aligned_cols=171  Identities=21%  Similarity=0.249  Sum_probs=122.8

Q ss_pred             CcccccCCeEEEEEEee--CCCCCceeEEEECCeeecC-----------------CCceEEEEeeeeceEEEEeecCCCC
Q psy11132         18 ERTLNVGERASLICSIT--KGDIPLTIKWLKDGRYLDN-----------------SAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~--~~~~~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      .+++..|+.++|.|.+.  .+.|.+.++|+|+|.....                 ..++... .......|.|.+++.+|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH-RSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEE-EETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEE-EcCCEEEEEEccCCHHH
Confidence            46788999999999642  3668889999997643211                 1111111 22235789999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC---CeeE
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF---PVNV  155 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~---~~~~  155 (243)
                      +|.|+|.+.|..+.....+.|.|..||.+...+.. ..+.+|+.+.|.|.+ .|.|.|.++|++++..+....   ....
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~-~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~r~~  158 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAPTAANGGVM  158 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEE-CCSSCSCCEEEEEEE-EEESCCEEEECCC------------CCE
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCceeeeccee-EEEcCCCEEEEEEEc-CCCCCCEEEEEECCeeecCcccccceEE
Confidence            99999999999998888899999877765544333 677899999999999 589999999998765443211   1111


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ...++.-..+.+.++..+|+|.|+|.|.|..|....
T Consensus       159 ~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          159 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            222333355677899999999999999999998764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.96  E-value=7e-28  Score=170.83  Aligned_cols=182  Identities=23%  Similarity=0.384  Sum_probs=137.7

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec------------CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD------------NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.            ...+....     ...|.|.+++.+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~L~i~~v~~~   75 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-----SSGITFSSVTRK   75 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEE-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-----TTEEEESCCCGG
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeC-CCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-----ceeEEEcccCcc
Confidence            4555666778899999999999996 66888999999876531            12233222     378999999999


Q ss_pred             CCeeEEEEEEeCCC--cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE-ecCCCCCe-
Q psy11132         78 HSGNYSCTVRNMVA--EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSPRFPV-  153 (243)
Q Consensus        78 d~G~Y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~~~~~~-  153 (243)
                      |+|.|+|.+.+..+  ..+..+.|.|..+|.+...... ..+..|+.+.|.|.+..+.|.+.+.|++++. .+...... 
T Consensus        76 D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~  154 (212)
T 1f97_A           76 DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKT  154 (212)
T ss_dssp             GCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECC-SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----C
T ss_pred             cCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCc-cccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccc
Confidence            99999999999866  4567788889888877655443 5577899999999943789999999999999 77654321 


Q ss_pred             -----eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eeeEEEEEE
Q psy11132        154 -----NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQVK  198 (243)
Q Consensus       154 -----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~~l~v~  198 (243)
                           .........+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       155 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          155 RAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             BSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence                 111122335679999999999999999999999988  455666666

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=9.3e-28  Score=181.42  Aligned_cols=209  Identities=18%  Similarity=0.174  Sum_probs=150.3

Q ss_pred             CCcccccCCeEEEEEEeeCC--------CCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe-eEEEEEE
Q psy11132         17 PERTLNVGERASLICSITKG--------DIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG-NYSCTVR   87 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~--------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~   87 (243)
                      ....+.+|+++.|.|.+.+.        .|.+.+.|++++..+....+.      .....|.|.+++.+|+| .|+|.+.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~------~~~~~L~i~~v~~~D~Gs~Y~C~a~  110 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR------VKNGDLWIANYTSNDSHRRYLCTVT  110 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT------EETTEEEESSCCGGGGGCCEEEEEE
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce------eecceEEEcCCChHhCCCcEEEEEE
Confidence            34568999999999998642        255799999999876543332      12678999999999999 9999999


Q ss_pred             eCCCcceeEEEEEEE-cCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         88 NMVAEDTQVQRLIVN-VPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      +..|.......+.+. .+|.+.... ....+.+|+.+.|.|.+ .|.| .+.+.|++++..+..........    ...|
T Consensus       111 n~~g~~~~~~~~~v~~~~p~~~~~~-~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~~~~~~~~~~----~~~L  184 (329)
T 3oq3_B          111 TKNGDCVQGIVRSHIRKPPSCIPET-YELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGTKYSQS----GQNL  184 (329)
T ss_dssp             CTTSCEEEEEEEEEECCCCSCEEEE-EETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECCCSSSSEEEE----TTEE
T ss_pred             eCCCceeeEEEEEEEcCCCcEeccc-cceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCCCCCceEecC----CCEE
Confidence            988764433332333 344432222 22456789999999998 6888 89999999999886332222111    3679


Q ss_pred             EEeecCCCCCeeEEEEEEcc--Ccceeee----EEEEEEeecC-----CCCCeeeeeccceeeeccCccccc------cc
Q psy11132        166 SINSVSAAHSGEYTCVASNT--AAQARYS----SKLQVKGNLN-----RLPPSYTLVFSQASYMSTSYYSFE------QD  228 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~--~g~~~~~----~~l~v~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~------~~  228 (243)
                      .|.++..+|+|.|+|.|.|.  .|.....    +.|.|...+.     ..|+...+..++.+.+.|.....+      .+
T Consensus       185 ~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v  264 (329)
T 3oq3_B          185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI  264 (329)
T ss_dssp             EECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEE
T ss_pred             EEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEE
Confidence            99999999999999999997  6544333    6666663221     134455667788899999887764      67


Q ss_pred             ceEEeCCee
Q psy11132        229 SWMIDNENY  237 (243)
Q Consensus       229 ~W~~~~~~~  237 (243)
                      .|+++|..+
T Consensus       265 ~W~~~g~~i  273 (329)
T 3oq3_B          265 DWENPSGWI  273 (329)
T ss_dssp             EEECTTSCB
T ss_pred             EEEECCeee
Confidence            999998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.96  E-value=6.7e-28  Score=167.96  Aligned_cols=181  Identities=21%  Similarity=0.362  Sum_probs=137.0

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC--CceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS--AALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...  .++...    ....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~   76 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAML----ANNNLQILNINKSDEGIYRCEG   76 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEE-CSSCCEEEEEC-----CBCCCTTEEEC----TTSCEEETTCCGGGCEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEc-CCCCCEEEEEECCccceeccCCeEEEe----cCCCEEEeeCCHhHCcEEEEEE
Confidence            56777777788899999999999995 6778899999999877542  232221    1457999999999999999999


Q ss_pred             EeCCCcc--eeEEEEEEEcCCCccccccC-CCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecccee
Q psy11132         87 RNMVAED--TQVQRLIVNVPPKIESFAFP-FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS  163 (243)
Q Consensus        87 ~~~~~~~--~~~~~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  163 (243)
                      .+..+..  ...+.+.+..+|.+...... ...+..|+.+.|.|.+ .+.|.+.+.|++++..+.........   ....
T Consensus        77 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~---~~~~  152 (189)
T 2v5t_A           77 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYILK---GSNT  152 (189)
T ss_dssp             EETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCCSSSEEEE---TTTT
T ss_pred             EEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcCCCcEEEe---cCCC
Confidence            9876543  34566677666655433221 2356789999999999 57899999999999998866544332   2246


Q ss_pred             EEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       153 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            79999999999999999999999999888888876

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=8.6e-28  Score=181.47  Aligned_cols=225  Identities=17%  Similarity=0.251  Sum_probs=151.8

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec---------CCCceEEEEee----eeceEEEEeecCC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD---------NSAALSITHVD----QYNSMLVIDSVSA   76 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---------~~~~~~~~~~~----~~~~~l~i~~~~~   76 (243)
                      ..+...+....+.+|+++.|.|.+.+..|.+.+.|++++....         ...++......    .....|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            3455556678899999999999996333778999999875421         01122211110    2356799999999


Q ss_pred             CCCeeEEEEEEeCCCcc-----eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCC
Q psy11132         77 RHSGNYSCTVRNMVAED-----TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSP  149 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~  149 (243)
                      +|+|.|+|.+.+..+..     .....|.|..+|..+....+...+..|+.+.|.|.+. +.|++  .+.|+++|..+..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~-g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESH-GFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEE-EEBSSCCEEEEEETTEECCC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEe-CccCCCcEEEEEECCEEccc
Confidence            99999999999876531     2346788887766544433336678999999999995 55544  9999999998875


Q ss_pred             CCCeeEEeec----cceeEEEEeecCCCCCeeEEEEEEccCcce---eeeEEEEEEeecCCCCCeeeee-----ccceee
Q psy11132        150 RFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQA---RYSSKLQVKGNLNRLPPSYTLV-----FSQASY  217 (243)
Q Consensus       150 ~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~---~~~~~l~v~~~~~~~~p~~~~~-----~~~~~~  217 (243)
                      ..........    ...+.|.|.....+|.|.|+|.|.|..+..   ..+..+.+.   ...||.+.+.     .++.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~---v~~~P~i~~~~~~~~~G~~v~  239 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET---IRVPPTLEVTQQPVRAENQVN  239 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT---BCBCCEEEEEEECCSSTTCCE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc---cCCCCEEEEecCCcCCCCcEE
Confidence            4321111111    113457787766677899999999987753   222322211   1256665543     567788


Q ss_pred             eccCcccc-c---ccceEEeCCeeE
Q psy11132        218 MSTSYYSF-E---QDSWMIDNENYV  238 (243)
Q Consensus       218 ~~~~~~~~-~---~~~W~~~~~~~~  238 (243)
                      +.|..... +   .+.|++||+.+.
T Consensus       240 l~C~~~g~~p~~~~v~W~k~g~~l~  264 (327)
T 2wng_A          240 VTCQVRKFYPQRLQLTWLENGNVSR  264 (327)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEEE
T ss_pred             EEEEEccccCCCcEEEEEECCeEcc
Confidence            99988764 2   699999998764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=186.74  Aligned_cols=224  Identities=16%  Similarity=0.146  Sum_probs=164.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeC------CCCCceeEEEECCeee--cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITK------GDIPLTIKWLKDGRYL--DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~------~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|.+...+....+.+|+.+.|.|.+..      +.|.+.+.|++++..+  .......+..   .+..|.|.+++.+|+
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA---QDGALWLLPALQEDS   93 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE---ETTEEEESSBCTTCC
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe---eCCeEEECCCCcccC
Confidence            4567777788889999999999999842      6777899999999873  3321222221   256899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcCCCccccc-cCCCCCCCCCcEEEEEE-----eecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFA-FPFDGLPEGARTRVICG-----VTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~g~~~~l~C~-----~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      |.|+|.+.+..+.....+.|.|..++...... .....+..|+.+.|.|.     + .+.|.+.+.|++++..+......
T Consensus        94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~g~p~~~v~W~k~g~~~~~~~~~  172 (339)
T 3o4o_C           94 GTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFT-RDKTDVKIQWYKDSLLLDKDNEK  172 (339)
T ss_dssp             EEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTC-CSSSCCCBCCEESSCBCCTTCSS
T ss_pred             EEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccc-cCCCCceEEEecCCeeCCCCCce
Confidence            99999999988888888889988776543111 11134678999999999     5 68899999999999988755322


Q ss_pred             eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc----eeeeEEEEEEeecCCCCCee-------eeeccceeeeccCc
Q psy11132        154 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ----ARYSSKLQVKGNLNRLPPSY-------TLVFSQASYMSTSY  222 (243)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~----~~~~~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~  222 (243)
                      ....  .....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.......+|.+       .+..+..+.+.|..
T Consensus       173 ~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~  250 (339)
T 3o4o_C          173 FLSV--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV  250 (339)
T ss_dssp             EEEC--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred             eEEc--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence            2211  12358999999999999999999998873    45567777764433234443       34457778899987


Q ss_pred             ---ccc---cccceEEeCCee
Q psy11132        223 ---YSF---EQDSWMIDNENY  237 (243)
Q Consensus       223 ---~~~---~~~~W~~~~~~~  237 (243)
                         .+.   +.+.|+++|..+
T Consensus       251 ~~~~g~P~~~~v~W~~~g~~~  271 (339)
T 3o4o_C          251 FLGTGTPLTTMLWWTANDTHI  271 (339)
T ss_dssp             EESSSCCSSCEEEEESSSSCS
T ss_pred             ECCCCCCCCceEEEEECCeec
Confidence               544   379999988653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.96  E-value=9.8e-28  Score=186.72  Aligned_cols=216  Identities=9%  Similarity=0.079  Sum_probs=140.5

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .+...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+.......  .......+|.|.+++.+|+|.|+|.|.|..
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~-g~P~p~i~W~~~~~~l~~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~  126 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQPHFD--LQNRGVVSMVILKMTETQAGEYLLFIQSEA  126 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECS-CCSSCEEEEEETTEEECCCCBC-------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred             cceeccccEEEecCCcEEEEEEEE-cCCCCeEEEEECCCccCccceec--cccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence            334445578899999999999995 78888999999998776533221  111223579999999999999999999998


Q ss_pred             CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec
Q psy11132         91 AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus        91 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  170 (243)
                      +.....+.|.|..+|.+....+  ..+..|+.+.|.|.+ .|.|.|.++|++++..+.................     +
T Consensus       127 g~~~~~~~l~V~~~p~~~~~~p--~~~~~~~~~~L~C~a-~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~-----l  198 (423)
T 3qs7_E          127 TNYTILFTVSIRNTLLYTLRRP--YFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV-----L  198 (423)
T ss_dssp             CEEEEEEEEEEC-----CEEEE--EEEECSSSSCEEEEE-EESSCCEEEEEEC-------------CEEECCSE-----E
T ss_pred             CcEEEEEEEEEecCccccccCC--cEeccCCceEEEEEE-eeecCCeEEEEECCCCCccccccccccccccceE-----E
Confidence            8888888888876554421111  123457788899999 6999999999998875432110000000000111     1


Q ss_pred             CCCCCeeEEEEEEccCcceee-eEEEEEEeecCCCCCeeeeeccceeeeccCccc-c--cccceEEeCCee
Q psy11132        171 SAAHSGEYTCVASNTAAQARY-SSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYS-F--EQDSWMIDNENY  237 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~-~--~~~~W~~~~~~~  237 (243)
                      ...|+|.|+|.|.|..|.... .+.|.|...+...++...+..++.+.+.|.... .  +.+.|+++|..+
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l  269 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL  269 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBC
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEc
Confidence            578999999999999997644 366666544443455667788999999998876 3  489999998753

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.96  E-value=7.3e-28  Score=172.96  Aligned_cols=190  Identities=24%  Similarity=0.351  Sum_probs=142.9

Q ss_pred             cCCCccCCC----CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132          8 VPPKLSPTN----PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         8 ~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .+|.+...+    ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+............|.|.+++.+|+|.|+
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecc-cCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            456654443    667799999999999995 677789999999998876544322222333568999999999999999


Q ss_pred             EEEEeCCCcceeEEEEEEEcCCCcc----ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe----CCEecCCCCCeeE
Q psy11132         84 CTVRNMVAEDTQVQRLIVNVPPKIE----SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNV  155 (243)
Q Consensus        84 C~~~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~~~~  155 (243)
                      |.+.+..+.....+.|.|...+...    ........+..|+.+.|.|.+ .+.|.+.+.|++    ++..+........
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~~~~  171 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYL  171 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTTBSBCTTSCBCE
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCCccccCCCcceE
Confidence            9999988887788888887644321    111122446789999999999 588999999999    7776654432211


Q ss_pred             E--ee----ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        156 S--DL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       156 ~--~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      .  ..    ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       172 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          172 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             EEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence            1  11    11235799999999999999999999999999999999884

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=5.1e-27  Score=174.30  Aligned_cols=190  Identities=21%  Similarity=0.344  Sum_probs=146.5

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...........  ....|.|.+++..|+|.
T Consensus        91 ~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~  167 (291)
T 2wim_A           91 VVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAML--ANNNLQILNINKSDEGI  167 (291)
T ss_dssp             EEEEEECCCBCCSCCCSEEEETTSCEEECCCCB-CSSCCEEEEECC----CBCCCSSEEEC--TTSCEEETTCCGGGCEE
T ss_pred             EEEEecCCcceEeCCCChhhcCCCCEEEEEEEc-cCCCCEEEEEECCccccccCCceEEEc--cCCCEEEEecchhhCEE
Confidence            456778888888777788899999999999995 778889999999987764222111111  14579999999999999


Q ss_pred             EEEEEEeCCCc--ceeEEEEEEEcCCCccccccC-CCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee
Q psy11132         82 YSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFP-FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL  158 (243)
Q Consensus        82 Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  158 (243)
                      |+|.+.+..+.  ....+.+.+..+|.+...... ...+..|+.+.|.|.+ .|.|.+.+.|++++..+.........  
T Consensus       168 Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~--  244 (291)
T 2wim_A          168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYILK--  244 (291)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEETTEECCCTTTEEEC--
T ss_pred             EEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEe-ecCCCCeEEEEECCEECcCCccEEEc--
Confidence            99999987754  345567777777776543321 2467789999999999 68899999999999998876544332  


Q ss_pred             ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        159 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       159 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                       .....|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus       245 -~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          245 -GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             -STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             -CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence             224679999999999999999999999999999999988

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.96  E-value=1.2e-28  Score=174.87  Aligned_cols=194  Identities=24%  Similarity=0.364  Sum_probs=137.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc---e-EEEEeee--eceEEEEeecCCCCCee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA---L-SITHVDQ--YNSMLVIDSVSARHSGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~-~~~~~~~--~~~~l~i~~~~~~d~G~   81 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....   . .......  ....|.|.+++..|+|.
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEE-EESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcC-CCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            478888888888999999999999995 677789999999988764321   1 1111110  01234455678999999


Q ss_pred             EEEEEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         82 YSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        82 Y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      |+|.+.+..+.. +..+.|.|...+...........+..|+.+.|.|.+..+.|.+.+.|++++..+..........   
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~---  163 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---  163 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE---
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc---
Confidence            999999987754 4566777765443322222324567899999999974578999999999999887654332221   


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceee-eEEEEEEeecCCCCCeeeee
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVKGNLNRLPPSYTLV  211 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~~~~~~p~~~~~  211 (243)
                       .+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|.     .+|.+...
T Consensus       164 -~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~-----~~P~~~~~  209 (212)
T 2v9r_A          164 -GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL-----ERPSFVKA  209 (212)
T ss_dssp             -TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE-----C-------
T ss_pred             -CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE-----eCchHhhh
Confidence             357999999999999999999999998665 4889998     66665543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.96  E-value=7e-28  Score=192.91  Aligned_cols=229  Identities=17%  Similarity=0.207  Sum_probs=163.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      +.|.|..||.+...+....+.+|+.+.|.|.+. +.+.+.+.|++ ++..+....++....    ...|.|.+++.+|+|
T Consensus       107 ~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~~~~~~v~W~~~~g~~l~~~~~~~~~~----~~~L~i~~~~~~d~G  181 (524)
T 2ec8_A          107 IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGCQGKPLPKDLRFIPDP----KAGIMIKSVKRAYHR  181 (524)
T ss_dssp             EEEECCCSSCSBCCCCCCCEETTSCEEECCCBS-CCCCSCEEEECSSSCCCCSSCEEEEET----TTEEEEESCCGGGTT
T ss_pred             EEEEECCCCcccccccceEEEcCCeEEEECcCC-CCccceEEEEccCCcCcCCCCceeECC----CccEEEeccchhhCC
Confidence            456777777777667778899999999999995 66668999998 777776655443322    457999999999999


Q ss_pred             -eEEEEEEeCCCcc-eeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEec--CCCC
Q psy11132         81 -NYSCTVRNMVAED-TQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPL--SPRF  151 (243)
Q Consensus        81 -~Y~C~~~~~~~~~-~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~--~~~~  151 (243)
                       .|+|.+.+..+.. +..+.|.|.    .+|.+...+.. ..+.+|+.+.|.|.+. +.|.+. +.|++++..+  ....
T Consensus       182 ~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~-~~v~~G~~v~L~C~~~-g~p~p~~i~W~~~~~~~~~~~~~  259 (524)
T 2ec8_A          182 LCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS-YLLREGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKY  259 (524)
T ss_dssp             CEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSE-EEEETTSCEEEEEEEE-ESSTTCEEEEEETTCSCCCCEEE
T ss_pred             ceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCc-ceEEcCCcEEEEEEEe-cCCCcEEEEEEeCCCCCcccccc
Confidence             9999999876654 447788886    44444333322 4577899999999995 777665 9999999874  2221


Q ss_pred             CeeEEe--eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecC-----CCCCeeeeeccceeeeccCccc
Q psy11132        152 PVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN-----RLPPSYTLVFSQASYMSTSYYS  224 (243)
Q Consensus       152 ~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~-----~~~p~~~~~~~~~~~~~~~~~~  224 (243)
                      ......  .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.     ..+....+..+..+.+.|....
T Consensus       260 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g  339 (524)
T 2ec8_A          260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA  339 (524)
T ss_dssp             EEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEE
T ss_pred             ccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEee
Confidence            111110  112357899999999999999999999999988888888872110     0111244556778888898766


Q ss_pred             cc--c-cceEEeCCee
Q psy11132        225 FE--Q-DSWMIDNENY  237 (243)
Q Consensus       225 ~~--~-~~W~~~~~~~  237 (243)
                      .|  . +.|+++|..+
T Consensus       340 ~P~p~~v~W~k~g~~~  355 (524)
T 2ec8_A          340 FPKPEHQQWIYMNRTF  355 (524)
T ss_dssp             ESCCCEEEEESSSCBC
T ss_pred             cCCCcEEEEEECCeec
Confidence            55  5 9999998764

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.95  E-value=2e-26  Score=188.63  Aligned_cols=214  Identities=18%  Similarity=0.299  Sum_probs=159.4

Q ss_pred             eEEEec---CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          3 VIFSTV---PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         3 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|.|..   +|.+.... ...+.+|+.+.|.|.+. + |.+.+.|+++|..+....++.+..   ....|.|.+++.+|+
T Consensus       103 ~l~V~~~~~~p~i~~~~-~~~v~~g~~v~l~C~~~-~-p~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~i~~~~~~d~  176 (642)
T 1e07_A          103 QFRVYPELPKPSISSNN-SKPVEDKDAVAFTCEPE-T-QDATYLWWVNNQSLPVSPRLQLSN---GNRTLTLFNVTRNDT  176 (642)
T ss_pred             EEEecccCCCCcEEccC-ceeEecCCcEEEEEECC-C-CCeeEEEEECCeECCCCCceEEcC---CCCEEEEeCCCcccC
Confidence            345554   34444432 35578899999999985 5 788999999999987766554332   246899999999999


Q ss_pred             eeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee
Q psy11132         80 GNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL  158 (243)
Q Consensus        80 G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  158 (243)
                      |.|+|.+.+..+. .+..+.|.|..+|...........+.+|+.+.|.|.+ .|.|.+.+.|+++|..+..         
T Consensus       177 G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i~~---------  246 (642)
T 1e07_A          177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQQS---------  246 (642)
T ss_pred             eeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEc-CCCCCcEEEEEECCeEccc---------
Confidence            9999999998775 3566888888766554433344567899999999999 7999999999999988743         


Q ss_pred             ccceeEEEEeecCCCCCeeEEEEEEccCcceeee--EEEEEEeecCCCCCee------eeeccceeeeccCccccc-ccc
Q psy11132        159 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS--SKLQVKGNLNRLPPSY------TLVFSQASYMSTSYYSFE-QDS  229 (243)
Q Consensus       159 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~--~~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~-~~~  229 (243)
                         ...|.|.++..+|+|.|+|.|.|..|....+  +.+.|...  ..+|.+      .+..++.+.+.|.....+ .+.
T Consensus       247 ---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~--~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~  321 (642)
T 1e07_A          247 ---TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE--PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYL  321 (642)
T ss_pred             ---CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc--CCCCEEEcCCceeEecCCcEEEEEECCCCCccEE
Confidence               2568999999999999999999998876544  44555422  123332      233456688888776554 899


Q ss_pred             eEEeCCee
Q psy11132        230 WMIDNENY  237 (243)
Q Consensus       230 W~~~~~~~  237 (243)
                      |+++|+.+
T Consensus       322 W~~~g~~l  329 (642)
T 1e07_A          322 WWVNNQSL  329 (642)
T ss_pred             EEECCccC
Confidence            99998654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.95  E-value=2.4e-27  Score=198.98  Aligned_cols=221  Identities=29%  Similarity=0.447  Sum_probs=170.0

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .|.|..||.+...+....+.+|+++.|.|.+. +.|.+.+.|+++|..+...           ...|.|.+++.+|+|.|
T Consensus       337 ~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~~~~~-----------~~~L~i~~v~~~d~G~Y  404 (816)
T 3dmk_A          337 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMY  404 (816)
T ss_dssp             EEEECEEEEEEEESSEEECCTTSCEEEEEEEE-EECCCEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEE
T ss_pred             EEEEcCCCceeeCCCceEecCCCCEEEEEEEe-ccCCCEEEEEECCEECCCC-----------CCEEEEcCCCHHHCEEE
Confidence            46666777777667778899999999999995 7788899999999887543           45699999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-  158 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-  158 (243)
                      +|.+.|..+.......+.|..   +|.+... .....+..|+.+.|.|.+ .|.|.+.+.|++++..+........... 
T Consensus       405 ~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~-~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  482 (816)
T 3dmk_A          405 QCFVRNDRESAEASAELKLGGRFDPPVIRQA-FQEETMEPGPSVFLKCVA-GGNPTPEISWELDGKKIANNDRYQVGQYV  482 (816)
T ss_dssp             EEEEECSSCEEEECCEEECCCSSCCCEEEEE-CCCEEECSSSCEEEEEEE-ECSSCCEEEEEETTEECCSCTTEEEEEEE
T ss_pred             EEEEECCCCcEEEEEEEEEccccCCCceEec-CcceEEcCCCCEEEEEEE-ecCCCCEEEEEECCEECCCCCCcccccEE
Confidence            999999888766666676642   3333322 222456789999999999 6899999999999999876655433221 


Q ss_pred             ---ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecC-CCCCeeeeeccceeeeccCccccc--ccceEE
Q psy11132        159 ---DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN-RLPPSYTLVFSQASYMSTSYYSFE--QDSWMI  232 (243)
Q Consensus       159 ---~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~  232 (243)
                         ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+. ..++...+..++.+.+.|.....+  .+.|++
T Consensus       483 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k  562 (816)
T 3dmk_A          483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER  562 (816)
T ss_dssp             CTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEE
T ss_pred             ecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEE
Confidence               12235799999999999999999999999988888888873221 122334556788889999876554  899999


Q ss_pred             eCCee
Q psy11132        233 DNENY  237 (243)
Q Consensus       233 ~~~~~  237 (243)
                      +|..+
T Consensus       563 ~~~~l  567 (816)
T 3dmk_A          563 DNRAL  567 (816)
T ss_dssp             TTEES
T ss_pred             CCeEc
Confidence            98654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=167.99  Aligned_cols=169  Identities=22%  Similarity=0.353  Sum_probs=136.1

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ..+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....          ...|.|.+++..|+|.|+|.+.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~   85 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGN----------TSELIFNAVHVKDAGFYVCRVN   85 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCC----------SSEEEETTCCGGGCEEEEEEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCC----------CCEEEEccCChhhCeEeEEEEE
Confidence            35677778888999999999999999 477888999999998876542          5679999999999999999999


Q ss_pred             eCCCcc-eeEEEEEEEcCCC---------------ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC
Q psy11132         88 NMVAED-TQVQRLIVNVPPK---------------IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus        88 ~~~~~~-~~~~~l~v~~~p~---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  151 (243)
                      +..+.. +..+.|.|...+.               +... .....+..|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus        86 n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~  163 (218)
T 3k0w_A           86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE-PTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET  163 (218)
T ss_dssp             CTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEEC-CCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCC
T ss_pred             cCCCCceeeEEEEEEEccCcccccccccccCCCceEEEC-CCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCC
Confidence            987653 5667788876532               1111 122456789999999999 689999999999999887543


Q ss_pred             CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc-eeeeEEEEEEe
Q psy11132        152 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVKG  199 (243)
Q Consensus       152 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v~~  199 (243)
                                ...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       164 ----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          164 ----------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             ----------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             ----------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence                      357999999999999999999998887 45678888874

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=173.44  Aligned_cols=203  Identities=16%  Similarity=0.197  Sum_probs=154.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+...+....+.+|+.+.|.|.+. +.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~-~~~~~~~~~W~~~g~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~~~   68 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVL-HLPGSSSTQWFLNGTATQTS-----------TPSYRITSASVNDSGEYRCQRG   68 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECS-SCCCTTCEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEES
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECC-CCCCCceEEEEECCEEeecc-----------CCeEEEecCCcccCeEEEEEEe
Confidence            36677777777899999999999995 66665 99999999887643           4569999999999999999998


Q ss_pred             eCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEE
Q psy11132         88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i  167 (243)
                      +..+.  ..+.|.|..++...  ......+.+|+.+.|.|.+..+.|.+.+.|++++..+...         .....|.|
T Consensus        69 ~~~~s--~~~~l~v~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~---------~~~~~l~i  135 (262)
T 3rjd_A           69 LSGRS--DPIQLEIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF---------HWNSNLTI  135 (262)
T ss_dssp             SSCCC--CCEEEEEECSSEEE--EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------EECCCEEE
T ss_pred             cCCcc--ccEEEEEeccceEe--cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---------CCCCeEEE
Confidence            75543  45667776554322  2222456789999999999667888999999999876421         11356899


Q ss_pred             eecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCee------eeeccceeeeccCccccc-------ccceEEeC
Q psy11132        168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSY------TLVFSQASYMSTSYYSFE-------QDSWMIDN  234 (243)
Q Consensus       168 ~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~-------~~~W~~~~  234 (243)
                      .+++.+|+|.|+|.|.|..+.....+.+.|....  .+|.+      .+..++.+.+.|.....+       .+.|+++|
T Consensus       136 ~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~  213 (262)
T 3rjd_A          136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF--PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS  213 (262)
T ss_dssp             SSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS--CCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETT
T ss_pred             EECChhhCEEEEEEEeCCCCccccceEEEeccCC--CCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCC
Confidence            9999999999999999999888888888887321  23333      345677888999887654       37899988


Q ss_pred             CeeE
Q psy11132        235 ENYV  238 (243)
Q Consensus       235 ~~~~  238 (243)
                      ..+.
T Consensus       214 ~~~~  217 (262)
T 3rjd_A          214 KTLR  217 (262)
T ss_dssp             EEEE
T ss_pred             cEec
Confidence            7654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.95  E-value=3.3e-27  Score=183.01  Aligned_cols=227  Identities=21%  Similarity=0.272  Sum_probs=162.9

Q ss_pred             eeEEEecCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec-CCCceEEEEeeeeceEEEEeecCCCC-
Q psy11132          2 LVIFSTVPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD-NSAALSITHVDQYNSMLVIDSVSARH-   78 (243)
Q Consensus         2 ~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d-   78 (243)
                      +.|.+..+|.+... .....+.+|+.+.|.|.+..+.|.+.+.|++++.... ...+....    ....|.|.+++..| 
T Consensus       108 ~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~~l~i~~v~~~d~  183 (404)
T 3p3y_A          108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG----HNGDLYFSNVMLQDM  183 (404)
T ss_dssp             EEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEEC----TTSCEEESSCCSGGG
T ss_pred             EEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEc----CCCcEEEEeeeeccC
Confidence            35677777765443 4457789999999999985578888999999875433 33333221    24579999999999 


Q ss_pred             CeeEEEEEEeCCCcc---eeEEEEEEEcCCCcccccc---------CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEe
Q psy11132         79 SGNYSCTVRNMVAED---TQVQRLIVNVPPKIESFAF---------PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP  146 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~---~~~~~l~v~~~p~~~~~~~---------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  146 (243)
                      .|.|+|.+.+..+..   ...+.+.+...+......+         ....+..|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus       184 ~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~  262 (404)
T 3p3y_A          184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGD  262 (404)
T ss_dssp             SSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB-CCSSCCEEEEEETTBC
T ss_pred             CcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE-CCCCCCcEEEEECCEE
Confidence            599999999887652   2334556653322111110         11236689999999999 6889999999999998


Q ss_pred             cCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCccc
Q psy11132        147 LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYS  224 (243)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~  224 (243)
                      +......    .......|.|.++..+|+|.|+|.|.|..|.....+.|.|...+  ...|....+..++.+.+.|...+
T Consensus       263 ~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  338 (404)
T 3p3y_A          263 LPSDKAK----FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANG  338 (404)
T ss_dssp             CCTTTEE----EEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEE
T ss_pred             CCCCccc----ccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccc
Confidence            8755331    11224689999999999999999999999998888888887422  11233345566788889998766


Q ss_pred             cc--ccceEEeCCee
Q psy11132        225 FE--QDSWMIDNENY  237 (243)
Q Consensus       225 ~~--~~~W~~~~~~~  237 (243)
                      .|  .+.|+++|..+
T Consensus       339 ~p~p~v~W~~~g~~~  353 (404)
T 3p3y_A          339 NPKPTVQWMVNGEPL  353 (404)
T ss_dssp             ESCCEEEEEETTEEG
T ss_pred             cCCCceEEEECCEec
Confidence            54  89999998654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=3.3e-27  Score=179.74  Aligned_cols=212  Identities=18%  Similarity=0.230  Sum_probs=145.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC-----------CceeEEEECCee------ec---CCCceEEEEeeeeceEEEEeecC
Q psy11132         16 NPERTLNVGERASLICSITKGDI-----------PLTIKWLKDGRY------LD---NSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~-----------~~~v~W~~~~~~------~~---~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      ...+.+.+|+.+.|.|.+. +.|           .+.+.|++++..      +.   ...++.     .....|.|.+++
T Consensus        14 ~~~v~v~~G~~v~L~C~~~-~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~   87 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLF-EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS-----KEKDVLWFRPTL   87 (349)
T ss_dssp             CCCCEEETTSCEEEECTCC-CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE-----EETTEEEESSCC
T ss_pred             eeeEEEecCCeEEEEcccc-ccccccccccccCCCceEEEEECCCCCcccccccccccCceEe-----ecCCEEEEccCC
Confidence            4567799999999999985 444           379999998842      11   111211     125689999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEcCCCcccccc---CCCCCCCCCcEEEEEEee----cCCCCCEEEEEeCCEecC
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF---PFDGLPEGARTRVICGVT----HGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~~g~~~~l~C~~~----~~~p~~~~~W~~~~~~~~  148 (243)
                      .+|+|.|+|.+.+..+.....+.|.|..++.......   ....+..|+.+.|.|.+.    .+.|.+.+.|++++..+.
T Consensus        88 ~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~  167 (349)
T 4dep_C           88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ  167 (349)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred             hhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence            9999999999999888877788889887665432211   113467899999999741    367899999999999886


Q ss_pred             CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC-cce---eeeEEEEEEeecC-CCCCee---------eeeccc
Q psy11132        149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQA---RYSSKLQVKGNLN-RLPPSY---------TLVFSQ  214 (243)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~---~~~~~l~v~~~~~-~~~p~~---------~~~~~~  214 (243)
                      ........     ...|.|.++..+|+|.|+|.|.|.. |..   ...+.+.|..... ..+|.+         .+..+.
T Consensus       168 ~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~  242 (349)
T 4dep_C          168 NFNNVIPE-----GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGE  242 (349)
T ss_dssp             SCSSEEEE-----TTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------
T ss_pred             Cccceeec-----CCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCC
Confidence            54322211     2679999999999999999999987 443   4556666653211 114443         344566


Q ss_pred             eeeeccCcc------cccccceEEeCCeeE
Q psy11132        215 ASYMSTSYY------SFEQDSWMIDNENYV  238 (243)
Q Consensus       215 ~~~~~~~~~------~~~~~~W~~~~~~~~  238 (243)
                      .+.+.|...      ..+.+.|+++|..+.
T Consensus       243 ~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~  272 (349)
T 4dep_C          243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPD  272 (349)
T ss_dssp             --CCCEEEEECCCTTCCCEEEEESSCC---
T ss_pred             cEEEEEEEEEccCCCCCCEEEEEECCEEcc
Confidence            788899776      335899999997654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.95  E-value=2.5e-27  Score=175.98  Aligned_cols=193  Identities=24%  Similarity=0.399  Sum_probs=147.5

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...........  ....|.|.+++.+|+|.
T Consensus        93 ~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~  169 (291)
T 1qz1_A           93 VNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVL--SNNYLQIRGIKKTDEGT  169 (291)
T ss_dssp             EEEEEECCSEEEECCSSEEEETTSCEEECCEEE-CSSCCEEEEEETTSCSSTTCCTTEEEC--TTSCEEETTCCGGGCEE
T ss_pred             EEEEeeccccccCCCCcccccCCCeEEEEEEec-cCCCCEEEEEECCEEcccCCCceEEEc--cCCcEEEccCccccCeE
Confidence            457778888888877788899999999999995 778889999999988754332222211  24679999999999999


Q ss_pred             EEEEEEeCCCc--ceeEEEEEEEcCCCcccccc-CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe-eEEe
Q psy11132         82 YSCTVRNMVAE--DTQVQRLIVNVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSD  157 (243)
Q Consensus        82 Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~  157 (243)
                      |+|.+.+..+.  ....+.+.|..+|.+..... ....+..|+.+.|.|.+ .|.|.+.+.|++++..+...... ....
T Consensus       170 Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~  248 (291)
T 1qz1_A          170 YRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKHI  248 (291)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSEE
T ss_pred             EEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE-EEeCCCcEEEEECCEECcCCCCCCcceE
Confidence            99999987643  34566777777666543321 12357789999999999 58899999999999988765310 0111


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       249 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            12234689999999999999999999999999888988887

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.95  E-value=1.4e-26  Score=189.53  Aligned_cols=218  Identities=18%  Similarity=0.273  Sum_probs=161.4

Q ss_pred             eeEEEecCCCc-cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132          2 LVIFSTVPPKL-SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus         2 ~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      +.|.|..+|.. ...+....+.+|+.+.|.|.+. +.|.+.+.|+++|..+..            ...|.|.+++.+|+|
T Consensus       373 ~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~i~W~~~g~~~~~------------~~~L~i~~~~~~d~G  439 (642)
T 1e07_A          373 VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGNIQQH------------TQELFISNITEKNSG  439 (642)
T ss_pred             EEEEEEcCCCCCeecCCceEecCCCcEEEEEEcC-ccCCCeEEEEECCEEcCC------------CceEEEccCChhhCe
Confidence            45677766643 3445567789999999999995 788889999999987753            345999999999999


Q ss_pred             eEEEEEEeCCCcceeE--EEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         81 NYSCTVRNMVAEDTQV--QRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~--~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      .|+|.+.|..+.....  +.+.|..++..+ ........+..|+.+.|.|.+. + |.+.+.|++++..+..........
T Consensus       440 ~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~-~~~~i~W~~~g~~l~~~~~~~~~~  517 (642)
T 1e07_A          440 LYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-A-QNTTYLWWVNGQSLPVSPRLQLSN  517 (642)
T ss_pred             EEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC-C-CCcEEEEEECCEeCCCCCcEEEcC
Confidence            9999999998765443  455555432211 1122224567899999999994 4 789999999999987665443322


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEEeecC---CCCCeeeeeccceeeeccCcccc--cccceE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKGNLN---RLPPSYTLVFSQASYMSTSYYSF--EQDSWM  231 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~~~~~---~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~  231 (243)
                         ....|.|.++..+|+|.|+|.|.|..|... ..+.|.|...+.   ..|....+..++.+.+.|...+.  +.++|+
T Consensus       518 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~  594 (642)
T 1e07_A          518 ---GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR  594 (642)
T ss_pred             ---CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEE
Confidence               246899999999999999999999999754 367888873221   12233455667888899987655  489999


Q ss_pred             EeCCee
Q psy11132        232 IDNENY  237 (243)
Q Consensus       232 ~~~~~~  237 (243)
                      +||..+
T Consensus       595 ~~g~~i  600 (642)
T 1e07_A          595 INGIPQ  600 (642)
T ss_pred             ECCEEC
Confidence            998754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=4.3e-27  Score=188.31  Aligned_cols=229  Identities=17%  Similarity=0.247  Sum_probs=151.3

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEe-e----eeceEEEEeecCCCCCe
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHV-D----QYNSMLVIDSVSARHSG   80 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~-~----~~~~~l~i~~~~~~d~G   80 (243)
                      ..+|.+...+....+.+|+.+.|.|.+.+..|+ +.+.|+++|..+........... .    ...+.|.|.+++.+|+|
T Consensus       112 ~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  191 (523)
T 2rcj_C          112 KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR  191 (523)
T ss_pred             CcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCc
Confidence            356777666666667789999999999644343 49999999988765432211100 1    01247999999999999


Q ss_pred             eEEEEEEeCCCcceeEEEEEE----EcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeE
Q psy11132         81 NYSCTVRNMVAEDTQVQRLIV----NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~  155 (243)
                      .|+|.+.|..+.....+.+.+    ..+|.+.... +...+.+|+.+.|.|.+.+..|.+ .+.|++++..+........
T Consensus       192 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~-~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~  270 (523)
T 2rcj_C          192 SYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV  270 (523)
T ss_pred             eEEEEEEecCcccccceeeeecCCCCcCCEEEecC-CCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE
Confidence            999999998776555444332    1233333222 224467899999999995334766 8999999987542111111


Q ss_pred             Eeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCee--eeeccceeeeccCcccc---
Q psy11132        156 SDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSY--TLVFSQASYMSTSYYSF---  225 (243)
Q Consensus       156 ~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~--~~~~~~~~~~~~~~~~~---  225 (243)
                      ...+   ...+.|.|.++..+| |.|+|.|.|..|.......+.+...+  ...+|..  .+..++.+.+.|...++   
T Consensus       271 ~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~  349 (523)
T 2rcj_C          271 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHE  349 (523)
T ss_pred             ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCC
Confidence            1111   114579999999999 99999999999987666666543111  0112211  14557788899988654   


Q ss_pred             ---cccceEEeCCee
Q psy11132        226 ---EQDSWMIDNENY  237 (243)
Q Consensus       226 ---~~~~W~~~~~~~  237 (243)
                         +.++|+++|..+
T Consensus       350 ~~~~~v~W~k~g~~l  364 (523)
T 2rcj_C          350 DPQVKFNWYVDGVQV  364 (523)
T ss_pred             CCceEEEEEECCeEc
Confidence               289999998765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.95  E-value=1.6e-27  Score=164.37  Aligned_cols=167  Identities=21%  Similarity=0.275  Sum_probs=127.4

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..+|.+...+....+.+|++++|.|.+. +.+. ..+.|++++..+...           ...|.|.+++.+|+|.|+|.
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGN-NFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTT-CC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCC-CCCCcceEEEEECCeECCCC-----------ceEEEEeccceecCEEEEEE
Confidence            4578888878888899999999999985 5554 479999999877642           56799999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      +.+..+  +..+.|.|..++....  .....+.+|+.+.|.|.+..+.|.+.+.|+++|..+....         ....|
T Consensus        70 ~~~~~~--s~~~~l~V~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---------~~~~L  136 (176)
T 1f2q_A           70 HQQVNE--SEPVYLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---------ENHNI  136 (176)
T ss_dssp             CTTSSC--CCCEEEEEECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC---------CSSEE
T ss_pred             cCCccc--cccEEEEEeCcceeec--CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec---------CCCeE
Confidence            987554  3456667764333222  2224567899999999995567778999999999885321         14679


Q ss_pred             EEeecCCCCCeeEEEEEEccCcc-eeeeEEEEEE
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  198 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v~  198 (243)
                      .|.++..+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          137 SITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            99999999999999999997543 4566888888

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.95  E-value=1.6e-27  Score=169.79  Aligned_cols=190  Identities=22%  Similarity=0.356  Sum_probs=136.8

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc--eEEEEee-eeceEEEEeecCCCCCeeEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVD-QYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~-~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  ....... .....|.|.+++..|+|.|+
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEE-CSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcC-CCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            4678888888888999999999999995 777889999999998865421  1111111 11122368889999999999


Q ss_pred             EEEEeCCCcc-eeEEEEEEEc-CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee---
Q psy11132         84 CTVRNMVAED-TQVQRLIVNV-PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL---  158 (243)
Q Consensus        84 C~~~~~~~~~-~~~~~l~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~---  158 (243)
                      |.+.+..+.. +..+.|.|.. +|.+... .....+..|+.+.|.|.+..+.|.+.+.|++++..+...........   
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  164 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV  164 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBC-CCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEEC-CCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence            9999987754 4456666655 3333322 22255778999999999855889999999999998874322111000   


Q ss_pred             -ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        159 -DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       159 -~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                       ....+.|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus       165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence             0123579999999999999999999999988777555544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=9.5e-28  Score=179.72  Aligned_cols=221  Identities=16%  Similarity=0.188  Sum_probs=148.6

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-----------------CCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-----------------SAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .++.+.+|++++|.|.+..+.+.+.+.|+|++.....                 ..+...........+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3567889999999999864555568999986532210                 12222222222356799999999999


Q ss_pred             eeEEEEEEeC-CCcceeEEEEEEEcCCCccccccC-CCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         80 GNYSCTVRNM-VAEDTQVQRLIVNVPPKIESFAFP-FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        80 G~Y~C~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      |.|+|.+.+. .+..+....+.+...|.......+ ......|+.+.|.|.+..|.|.+.+.|++++..+..........
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence            9999999875 445666777777777665443322 23445688999999876789999999999998775432111111


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceee--eEEEEEEeecC---CCCCeeeeeccceeeeccCccccc---ccc
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY--SSKLQVKGNLN---RLPPSYTLVFSQASYMSTSYYSFE---QDS  229 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~l~v~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~---~~~  229 (243)
                      .....+.|.|..+..+|+|.|+|.|.|..+....  ++.|.|...+.   ..++......++.+.+.|...+.|   .+.
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~  246 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSV  246 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEE
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEE
Confidence            1122457999999999999999999998876543  34444442110   011122334456778899887664   689


Q ss_pred             eEEeCCee
Q psy11132        230 WMIDNENY  237 (243)
Q Consensus       230 W~~~~~~~  237 (243)
                      |+|++..+
T Consensus       247 W~k~~~~~  254 (308)
T 4fom_A          247 WSRLDGQW  254 (308)
T ss_dssp             CCBSSSCC
T ss_pred             EEECCeEC
Confidence            99988654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=3.1e-28  Score=188.36  Aligned_cols=227  Identities=15%  Similarity=0.172  Sum_probs=155.9

Q ss_pred             EEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132          4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         4 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      |.+..||.+...+....+.+|+.+.|.|.+.++.|.+.+.|+++|..+....... . .....++|.|.+++.+|+|.|+
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~-~-~~~~~~~L~i~~~~~~D~G~Y~   78 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA-A-LRKDEGSLVFLRPQASDEGHYQ   78 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTE-E-ECTTSCCEEESSCCGGGCEEEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceE-E-EecCCceEEEecCCCCCCcEEE
Confidence            3567899999998899999999999999997447888999999999887654311 1 1122567999999999999999


Q ss_pred             EEEEeCCCcce-eEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE---ecCC----CCCeeE
Q psy11132         84 CTVRNMVAEDT-QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK---PLSP----RFPVNV  155 (243)
Q Consensus        84 C~~~~~~~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~---~~~~----~~~~~~  155 (243)
                      |.+.+..+... ..+.|.+...+.+...+ ....+.+|+.+.|.|.+..+.|.+.+.|++++.   ....    ......
T Consensus        79 C~a~n~~g~~~s~~~~l~v~~~~~p~~~~-~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  157 (395)
T 1bih_A           79 CFAETPAGVASSRVISFRKTYLIASPAKT-HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA  157 (395)
T ss_dssp             EEEEETTEEEECCCEEEEEEEEECCCCEE-EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE
T ss_pred             EEEEeCCCeEEeEEEEEEEEEeecCCcCC-cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE
Confidence            99999877542 33555554322222222 225567999999999964688999999999862   1111    111111


Q ss_pred             EeeccceeEEEEeecCCCCCe---eEEEEEEccCcceeeeEEEEEEeecC--------C-----CCCeeeeeccceeeec
Q psy11132        156 SDLDSFSSLLSINSVSAAHSG---EYTCVASNTAAQARYSSKLQVKGNLN--------R-----LPPSYTLVFSQASYMS  219 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g---~y~C~~~n~~g~~~~~~~l~v~~~~~--------~-----~~p~~~~~~~~~~~~~  219 (243)
                          ...+.|.|.++..+|+|   .|+|.|.|..|...............        .     .+....+..++.+.+.
T Consensus       158 ----~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~  233 (395)
T 1bih_A          158 ----GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIY  233 (395)
T ss_dssp             ----CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEE
T ss_pred             ----cCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEE
Confidence                11346899999999999   99999999988765443332221100        0     1223456678888899


Q ss_pred             cCcccc--cccceEEeCCee
Q psy11132        220 TSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       220 ~~~~~~--~~~~W~~~~~~~  237 (243)
                      |.....  +.+.|+++|..+
T Consensus       234 C~~~g~p~~~i~W~~~g~~~  253 (395)
T 1bih_A          234 CMYGSNPMGYPNYFKNGKDV  253 (395)
T ss_dssp             EEEECSSCCCCEEEETTEEC
T ss_pred             EEeccCCCCeEEEEECCEEc
Confidence            977544  489999998654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=6.4e-27  Score=187.31  Aligned_cols=228  Identities=16%  Similarity=0.187  Sum_probs=152.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .+|.+........+.+|+.+.|.|.+.+..|.+ .+.|++++..+...........+   ...+.|.|.+++.+| |.|+
T Consensus       218 ~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~  296 (523)
T 2rcj_C          218 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI  296 (523)
T ss_pred             cCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEE
Confidence            456655444445578999999999996444656 89999999775421111111100   114589999999999 9999


Q ss_pred             EEEEeCCCcceeEEEEEEEcCCCccccccCCCC-CCCCCcEEEEEEeecCCCC----CEEEEEeCCEecCCCCCeeEEee
Q psy11132         84 CTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPP----LTIRWLKDGKPLSPRFPVNVSDL  158 (243)
Q Consensus        84 C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~----~~~~W~~~~~~~~~~~~~~~~~~  158 (243)
                      |.|.|..+.......+.+...|.+....+.... +.+|+.+.|.|.+. |.|+    +.+.|+++|..+...........
T Consensus       297 C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~-g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~  375 (523)
T 2rcj_C          297 CNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVV-DVSHEDPQVKFNWYVDGVQVHNAKTKPREQQ  375 (523)
T ss_pred             EEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEe-cccCCCCceEEEEEECCeEccCCccCCceec
Confidence            999999988766666666555554333322233 67899999999995 6442    59999999998875432211111


Q ss_pred             -c---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc--
Q psy11132        159 -D---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF--  225 (243)
Q Consensus       159 -~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~--  225 (243)
                       .   ...+.|.|..+..+|+|.|+|.|.|..+.......+.+.. ....+|.+.+.       .+..+.+.|...++  
T Consensus       376 ~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p  454 (523)
T 2rcj_C          376 YNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYP  454 (523)
T ss_pred             CCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc-CCCCCCEEEEeCCChHHccCCceEEEEEEEeeEC
Confidence             1   1135688999999999999999999887665444444210 01245554432       23347899988765  


Q ss_pred             c--ccceEEeCCeeE
Q psy11132        226 E--QDSWMIDNENYV  238 (243)
Q Consensus       226 ~--~~~W~~~~~~~~  238 (243)
                      +  .+.|++||+.+.
T Consensus       455 ~~~~v~W~k~g~~~~  469 (523)
T 2rcj_C          455 SDIAVEWESNGQPEN  469 (523)
T ss_pred             CCCEEEEEECCEECC
Confidence            2  799999987653

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.95  E-value=2.4e-27  Score=182.98  Aligned_cols=226  Identities=20%  Similarity=0.290  Sum_probs=159.2

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCC--CceeEEEECCeeecC-----CCceEEEEeeeeceEEEEeec
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDI--PLTIKWLKDGRYLDN-----SAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+.+..+  .+.+.|++++..+..     ..+....    ....|.|.++
T Consensus        96 ~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v  171 (388)
T 2v5m_A           96 VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL----PSGELHIREV  171 (388)
T ss_dssp             EEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC----TTSCEEESSC
T ss_pred             eEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc----cCCcEEEecC
Confidence            4567777888777777788999999999999863332  278999999876632     1222221    2467999999


Q ss_pred             CCCCC-eeEEEEEEeCCCcce----eEEEEEEEcCCC-----ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCC
Q psy11132         75 SARHS-GNYSCTVRNMVAEDT----QVQRLIVNVPPK-----IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG  144 (243)
Q Consensus        75 ~~~d~-G~Y~C~~~~~~~~~~----~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  144 (243)
                      +.+|. |.|+|.+.+..+...    ....|.|..+..     ..........+.+|+.+.|.|.+ .|.|.+.+.|++++
T Consensus       172 ~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~  250 (388)
T 2v5m_A          172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA-QGFPAPSFRWYKFI  250 (388)
T ss_dssp             CGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC-EEESCCEEEEEEEC
T ss_pred             CccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC-CCCCCCEEEEEecC
Confidence            99999 999999998754321    123456655421     11111122346689999999998 58899999999975


Q ss_pred             EecCC------CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeecccee
Q psy11132        145 KPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQAS  216 (243)
Q Consensus       145 ~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~  216 (243)
                      ..+..      .....     ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|...+  ...|+...+..++.+
T Consensus       251 ~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~  325 (388)
T 2v5m_A          251 EGTTRKQAVVLNDRVK-----QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA  325 (388)
T ss_dssp             TTSSCEEECCCSSSEE-----EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCE
T ss_pred             CCCcccccccccCcee-----cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCE
Confidence            43321      11111     124579999999999999999999999998888888887322  112334455667888


Q ss_pred             eeccCccccc--ccceEEeCCee
Q psy11132        217 YMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       217 ~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .+.|...+.|  .+.|+++|..+
T Consensus       326 ~l~C~~~g~p~p~i~W~~~g~~i  348 (388)
T 2v5m_A          326 VFTCQYTGNPIKTVSWMKDGKAI  348 (388)
T ss_dssp             EEEEEEEEECCCEEEEEETTEEC
T ss_pred             EEEEEeccccCCeEEEEECCEEC
Confidence            8999876554  89999998754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=3.2e-27  Score=182.13  Aligned_cols=225  Identities=19%  Similarity=0.306  Sum_probs=154.3

Q ss_pred             EEEecCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          4 IFSTVPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         4 l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |.+..++.+... .....+.+|+.+.|.|....+.+.+.+.|++++..+....+....   .....|.|.+++.+|+|.|
T Consensus        96 l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y  172 (384)
T 3kld_A           96 LQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS---QETGNLYIAKVEKSDVGNY  172 (384)
T ss_dssp             EEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEEC---TTTCCEEESSCCGGGCEEE
T ss_pred             EEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEE---cCCCcEEEeecCHHHCceE
Confidence            344444443332 345678999999999976545667899999999887644432221   1245799999999999999


Q ss_pred             EEEEEeCCCccee---EEEEEEE-------cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCC-EecCCCC
Q psy11132         83 SCTVRNMVAEDTQ---VQRLIVN-------VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-KPLSPRF  151 (243)
Q Consensus        83 ~C~~~~~~~~~~~---~~~l~v~-------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-~~~~~~~  151 (243)
                      +|.+.|..+....   ...+.+.       ..|.+.........+.+|+.+.|.|.+ .|.|.+.+.|++++ ..+....
T Consensus       173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~~~~  251 (384)
T 3kld_A          173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA-LGNPVPTILWRRADGKPIARKA  251 (384)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTCCCCCTTC
T ss_pred             EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE-eecCCCcEEEEeCCCccccccc
Confidence            9999998764321   1122221       112222111222345789999999999 58999999999954 4443321


Q ss_pred             CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecC--CCCCeeeeeccceeeeccCccccc--c
Q psy11132        152 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN--RLPPSYTLVFSQASYMSTSYYSFE--Q  227 (243)
Q Consensus       152 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~--~  227 (243)
                      .     .......|.|.++..+|+|.|+|.|.|..|.......|.|...+.  ..+....+..+..+.+.|...+.|  .
T Consensus       252 ~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~  326 (384)
T 3kld_A          252 R-----RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT  326 (384)
T ss_dssp             E-----ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCE
T ss_pred             e-----ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCe
Confidence            1     112246799999999999999999999999988888888873221  122334556678888999877654  8


Q ss_pred             cceEEeCCee
Q psy11132        228 DSWMIDNENY  237 (243)
Q Consensus       228 ~~W~~~~~~~  237 (243)
                      +.|++||..+
T Consensus       327 i~W~k~g~~l  336 (384)
T 3kld_A          327 YRWLKNGDPL  336 (384)
T ss_dssp             EEEEETTEEC
T ss_pred             EEEEECCEEC
Confidence            9999998764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.95  E-value=4.7e-27  Score=165.56  Aligned_cols=168  Identities=14%  Similarity=0.152  Sum_probs=129.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+....+.+|+++.|.|.+. +.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~-~~p~~~~v~W~k~g~~l~~~-----------~~~L~i~~v~~~D~G~Y~C~a   73 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGA-YSPEDQSTQWFHNESLISSQ-----------ASSYFIDAATVDDSGEYRCQT   73 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECC-SSSSCCCEEEEETTEEESCC-----------SSEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCC-CCCCCcEEEEEECCEEcccC-----------ccEEEEecccccCCEEEEEEe
Confidence            456666667667899999999999995 55544 59999999887653           267999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (243)
                      .+.  ..+..+.|.|..+|.+...+  ...+.+|+.+.|.|.+..+.|.+.+.|++++..+...         .....|.
T Consensus        74 ~n~--~~s~~~~l~V~~~p~~~~~~--~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~---------~~~~~L~  140 (204)
T 3sgj_C           74 QLS--TLSDPVQLEVHIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF---------HHNSDFY  140 (204)
T ss_dssp             TTS--BCCCCEEEEEECSSEEEECS--CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------EECCCEE
T ss_pred             CCC--cccccEEEEEecCceEecCC--ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc---------cCCceEE
Confidence            863  44556778887766543322  2456789999999999555577899999999875321         1246799


Q ss_pred             EeecCCCCCeeEEEEEEcc-CcceeeeEEEEEEee
Q psy11132        167 INSVSAAHSGEYTCVASNT-AAQARYSSKLQVKGN  200 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~-~g~~~~~~~l~v~~~  200 (243)
                      |.++..+|+|.|+|.|.|. .+..+..+.|.|.+.
T Consensus       141 i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          141 IPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence            9999999999999999994 445566788888743

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=1.5e-27  Score=183.88  Aligned_cols=170  Identities=24%  Similarity=0.375  Sum_probs=138.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC-eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++ ..+....+.     ......|.|.+++.+|+|.|+|.|.|..|...
T Consensus       212 ~~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  285 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARKARR-----HKSNGILEIPNFQQEDAGSYECVAENSRGKNV  285 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEE-EESCCEEEEEETTCCCCCTTCEE-----CTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCceEecCCCcEEEEEEEe-ecCCCcEEEEeCCCcccccccee-----cCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            4556788999999999995 7888899999954 444332211     11256899999999999999999999999888


Q ss_pred             eEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCC
Q psy11132         95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH  174 (243)
Q Consensus        95 ~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (243)
                      ....|.|..+|.+...... ..+..|+.+.|.|.+ .|.|.+.+.|+++|..+.........     ...|.|..+..+|
T Consensus       286 ~~~~l~v~~~P~~~~~~~~-~~v~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~-----~~~L~i~~v~~~D  358 (384)
T 3kld_A          286 AKGQLTFYAQPNWVQIIND-IHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLLTRDRIQIE-----QGTLNITIVNLSD  358 (384)
T ss_dssp             EEEEEEEEEEEEEEECCCC-EEECTTCCEEEECEE-EEESCCEEEEEETTEECCCBTTEEEE-----TTEEEESSCCGGG
T ss_pred             EEEEEEEecCCccccCCCc-eEecCCCCEEEEeEC-CccCCCeEEEEECCEECCCCccEEEe-----CCEEEEeecChhh
Confidence            8888998887766544332 567789999999999 58999999999999998765544332     3579999999999


Q ss_pred             CeeEEEEEEccCcceeeeEEEEEE
Q psy11132        175 SGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       175 ~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +|.|+|.|.|..|....++.|.|.
T Consensus       359 ~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          359 AGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEEEeCCceEEeceEEEEe
Confidence            999999999999999999998876

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=5.6e-27  Score=174.10  Aligned_cols=206  Identities=18%  Similarity=0.270  Sum_probs=151.9

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|++++|.|.+. +    .+.|++++..+    ..  .  ...+..|.|.+++.+|+|.|+|.+
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~-~----~i~W~~~~~~~----~~--~--~~~~~~L~i~~~~~~d~G~Y~C~~   76 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDP-D----FVRWTFKTYFN----EM--V--ENKKNEWIQEKAEATRTGTYTCSN   76 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECT-T----EEEEEEECSSS----CE--E--EECSSEEEETTCCGGGCEEEEEEE
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCC-C----cEEEecCCcce----ee--e--cCCCceEEEeccCHHhCeEEEEEe
Confidence            4578888878888899999999999984 4    89999999766    11  1  111478999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEE-eCCEecCCCCCeeEEeeccceeE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWL-KDGKPLSPRFPVNVSDLDSFSSL  164 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~  164 (243)
                      .+  +. +..+.|.|..+|.+.. ......+.+|+.+.|.|.+. + |. +.+.|+ ++|..+..........    ...
T Consensus        77 ~n--g~-~~~~~l~V~~~~~~~~-~~~~~~~~~g~~v~l~C~~~-~-p~~~~v~W~~~~g~~l~~~~~~~~~~----~~~  146 (290)
T 2o26_X           77 SN--GL-TSSIYVFVRDPAKLFL-VGLPLFGKEDSDALVRCPLT-D-PQVSQYSLIECDGKSLPTDLTFVPNP----KAG  146 (290)
T ss_dssp             SS--SC-EEEEEEEEECSSCCBC-CCCCEEEETTSCEEECCCBS-C-CSCEEEEEEETTSCCCCTTCEEEEET----TTE
T ss_pred             eC--Cc-cEEEEEEEeCCCcccc-cccceEEecCCeEEEeCcCC-C-CCCceEEEEeCCCcCCCCCCceeeCC----CCC
Confidence            98  43 6778888888776653 23335567899999999994 5 76 899995 6777776543322211    246


Q ss_pred             EEEeecCCCCCe-eEEEEEEccCccee-eeEEEEEEeecCCCCCeee-------eeccceeeeccCccccc--c-cceEE
Q psy11132        165 LSINSVSAAHSG-EYTCVASNTAAQAR-YSSKLQVKGNLNRLPPSYT-------LVFSQASYMSTSYYSFE--Q-DSWMI  232 (243)
Q Consensus       165 l~i~~~~~~d~g-~y~C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~--~-~~W~~  232 (243)
                      |.|.++..+|+| .|+|.|.|..+... ..+.+.|.... ..+|.+.       +..++.+.+.|.....+  . +.|++
T Consensus       147 L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~-~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~  225 (290)
T 2o26_X          147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI-KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK  225 (290)
T ss_dssp             EEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC-CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEE
T ss_pred             EEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC-CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEec
Confidence            899999999999 99999999866543 35677765322 1344443       34567778888876654  4 99999


Q ss_pred             eCCe
Q psy11132        233 DNEN  236 (243)
Q Consensus       233 ~~~~  236 (243)
                      +|..
T Consensus       226 ~~~~  229 (290)
T 2o26_X          226 MNPQ  229 (290)
T ss_dssp             ESSS
T ss_pred             CCCC
Confidence            9987

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.95  E-value=7.6e-27  Score=181.00  Aligned_cols=187  Identities=26%  Similarity=0.344  Sum_probs=149.1

Q ss_pred             eeEEEecCCCc------cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC
Q psy11132          2 LVIFSTVPPKL------SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus         2 ~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      +.+.+..+|.+      ...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..........   ....|.|.+++
T Consensus       208 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~  283 (403)
T 3laf_A          208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLL---GGSNLLISNVT  283 (403)
T ss_dssp             EEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEE-EESCCEEEEEETTEECCCSSSSEEEE---TTTEEEECSCC
T ss_pred             eeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcC-CCCCCeEEEEECCeeccCCCceEEEC---CccEEEEeCCC
Confidence            34556655542      3345567788999999999996 77778999999998876543322111   24679999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  155 (243)
                      .+|+|.|+|.+.|..+..+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+.+.|++++..+........
T Consensus       284 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~  361 (403)
T 3laf_A          284 DDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSN-LYAYESMDIEFECAV-SGKPVPTVNWMKNGDVVIPSDYFQI  361 (403)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCC-EECCTTCCEEECCEE-EEESCCEEEEEETTEECCCSSSEEE
T ss_pred             HHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcc-eEEecCCeEEEEEEE-eeccCCEEEEEECCEECCCCCcEEE
Confidence            99999999999999888888899999887766544433 557789999999999 5889999999999998876654433


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .    ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       362 ~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          362 V----GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             E----TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             e----cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            2    23679999999999999999999999999999999887

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=3.4e-27  Score=177.37  Aligned_cols=224  Identities=17%  Similarity=0.140  Sum_probs=150.0

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      ...+..+|.+...+. ..+.+|++++|.|.+. +. .+.+.|+|+|..+.....     .......|.|.+++.+|+|.|
T Consensus        18 ~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~-~~~~~W~k~g~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y   89 (316)
T 3vh8_G           18 HMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYR-HR-FNNFMLYKEDRIHIPIFH-----GRIFQESFNMSPVTTAHAGNY   89 (316)
T ss_dssp             ------CCEEEEESC-SEEETTSCEEEEEEBT-TB-CCSEEEEESSCSSSCHHH-----HCCBSSCEEECSCCGGGCEEE
T ss_pred             ccCCCCCCEeeccCC-CccCCCCCEEEEEEcc-CC-CceEEEEeCCCccceeec-----CCcceEEEEECCCCcccCeEE
Confidence            345567888887766 5688999999999995 44 568999999987543211     011256799999999999999


Q ss_pred             EEEEEeCC-----CcceeEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         83 SCTVRNMV-----AEDTQVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        83 ~C~~~~~~-----~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      +|.+.+..     ...+..+.|.|...+..+ ....+...+.+|+.+.|.|.+ . .+++.+.|++++..+.........
T Consensus        90 ~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~  167 (316)
T 3vh8_G           90 TCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS-D-IMFEHFFLHKEGISKDPSRLVGQI  167 (316)
T ss_dssp             EEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE-S-SCCSEEEEEETTCCSCCEEEECEE
T ss_pred             EEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC-C-CCCcEEEEEECCCccccceeeeee
Confidence            99998532     234556777776543211 111222336789999999998 3 456799999999877543211111


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcce-----eeeEEEEEEeecCCCCCeeee------eccceeeeccCccc-
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-----RYSSKLQVKGNLNRLPPSYTL------VFSQASYMSTSYYS-  224 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-----~~~~~l~v~~~~~~~~p~~~~------~~~~~~~~~~~~~~-  224 (243)
                      ........|.|.+++.+|+|.|+|.|.|..|..     ...+.|.|.+.  ..+|.+..      ..++.+.+.|.... 
T Consensus       168 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~--~~~p~i~~~~~~~v~~G~~v~L~C~~~~~  245 (316)
T 3vh8_G          168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP--YEKPSLSAQPGPKVQAGESVTLSCSSRSS  245 (316)
T ss_dssp             ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS--SCCCEEEEESCSCCCTTSCCEEEEEESSC
T ss_pred             cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC--CCCCeEEeCCCCeecCCCcEEEEEECCCC
Confidence            122235789999999999999999999988742     44456666532  24555543      34667788886642 


Q ss_pred             ccccceEEeCCeeE
Q psy11132        225 FEQDSWMIDNENYV  238 (243)
Q Consensus       225 ~~~~~W~~~~~~~~  238 (243)
                      .+.+.|+++|..+.
T Consensus       246 ~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          246 YDMYHLSREGGAHE  259 (316)
T ss_dssp             CSEEEEEETTSSCC
T ss_pred             CcEEEEEECCCcCC
Confidence            34899999987643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.95  E-value=1.2e-27  Score=169.32  Aligned_cols=184  Identities=22%  Similarity=0.392  Sum_probs=138.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec------------CCCceEEEEeeeeceEEEEeecC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD------------NSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      .++.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.            ...+....     ...|.|.+++
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~L~i~~~~   76 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-----PTGITFKSVT   76 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEE-SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-----TTEEECSCCC
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEe-CCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-----ccEEEEeeCC
Confidence            355666667778899999999999996 66888999999876521            12222222     3789999999


Q ss_pred             CCCCeeEEEEEEeCCC--cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         76 ARHSGNYSCTVRNMVA--EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      .+|+|.|+|.+.+..+  ..+..+.|.|..+|.+...... ..+..|+.+.|.|.+..+.|.+.+.|++++..+......
T Consensus        77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~  155 (209)
T 1nbq_A           77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS  155 (209)
T ss_dssp             TTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCB-SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSS
T ss_pred             HHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccc-cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcccc
Confidence            9999999999998855  3456778888888876655433 456789999999996568899999999999887654321


Q ss_pred             e------EEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eeeEEEEEE
Q psy11132        154 N------VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQVK  198 (243)
Q Consensus       154 ~------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~~l~v~  198 (243)
                      .      ........+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       156 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             SSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             ceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            0      00111234679999999999999999999999987  344555554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.95  E-value=4.7e-27  Score=166.76  Aligned_cols=178  Identities=23%  Similarity=0.360  Sum_probs=132.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC----CceeEEEEC----------------CeeecC-----CCceEEEE--eeeeceE
Q psy11132         16 NPERTLNVGERASLICSITKGDI----PLTIKWLKD----------------GRYLDN-----SAALSITH--VDQYNSM   68 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~----------------~~~~~~-----~~~~~~~~--~~~~~~~   68 (243)
                      +..+.+.+|+++.|.|.+. +.+    .+.+.|+++                +..+..     ..+..+..  ......+
T Consensus         7 ~~~v~v~~G~~v~L~C~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFT-LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             EEEEEEETTSCEEECCBCC-CCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CceEEEecCCCEEEEEEEe-cCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            3456789999999999985 444    469999983                333321     22332221  1123577


Q ss_pred             EEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132         69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        69 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  148 (243)
                      |.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...... ..+..|+.+.|.|.+..+.|.+.+.|++++....
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~  164 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVD-GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT  164 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEE-SCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCC
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeee-cceecCCcEEEEecCCCCCCCCEEEEEECCCCCc
Confidence            999999999999999999998888888899999988877654433 4577899999999985588999999999543222


Q ss_pred             CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ......   .......|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       165 ~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          165 MPTPWL---AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CCGGGG---GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             cCccce---eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            111110   11124589999999999999999999999999888888877

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.95  E-value=5.2e-27  Score=180.75  Aligned_cols=224  Identities=18%  Similarity=0.207  Sum_probs=157.9

Q ss_pred             eEEEecCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC--CCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          3 VIFSTVPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         3 ~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|.+..+|.+... .....+.+|+.+.|.|.+..+.|.+.+.|++++..+..  ..+...   ......|.|.+++.+|+
T Consensus        94 ~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~  170 (382)
T 1cs6_A           94 SLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV---SQTTGNLYIAKTEASDL  170 (382)
T ss_dssp             EEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE---CTTTCCEEESSCCGGGC
T ss_pred             EEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE---ecCceEEEEEeeCcccC
Confidence            4555555554433 55677899999999999755667789999999876532  222211   11246799999999999


Q ss_pred             eeEEEEEEeCCCcc-----eeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132         80 GNYSCTVRNMVAED-----TQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        80 G~Y~C~~~~~~~~~-----~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  148 (243)
                      |.|+|.+.+..+..     +..+.|.+..      +|.+.........+..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus       171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~  249 (382)
T 1cs6_A          171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQT  249 (382)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCS
T ss_pred             eeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE-ccCCCCEEEEEECCcccc
Confidence            99999999876432     2234455432      22222211222456789999999999 588999999999887765


Q ss_pred             CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCcccc-
Q psy11132        149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSF-  225 (243)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~-  225 (243)
                      ..       .......|.|.++..+|+|.|+|.|.|..|.....+.|.|...+  ...+....+..++.+.+.|...+. 
T Consensus       250 ~~-------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p  322 (382)
T 1cs6_A          250 SK-------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKP  322 (382)
T ss_dssp             CC-------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEES
T ss_pred             cE-------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeec
Confidence            31       11225679999999999999999999999998888888887322  112333455667888899987655 


Q ss_pred             -cccceEEeCCee
Q psy11132        226 -EQDSWMIDNENY  237 (243)
Q Consensus       226 -~~~~W~~~~~~~  237 (243)
                       +.+.|+++|..+
T Consensus       323 ~p~v~W~~~g~~~  335 (382)
T 1cs6_A          323 RPAVRWLRDGQPL  335 (382)
T ss_dssp             CCEEEEEETTEEC
T ss_pred             CCEEEEEECCEEC
Confidence             489999998654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=1.2e-27  Score=179.70  Aligned_cols=214  Identities=17%  Similarity=0.180  Sum_probs=149.4

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec----CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD----NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      ....+.+.+|+.+.|.|.+.+..+.+.+.|++++..+.    ...++...     ...|.|.+++.+|+|.|+|.+.+..
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (315)
T 1itb_B           11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-----KEKLWFVPAKVEDSGHYYCVVRNSS   85 (315)
T ss_dssp             CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-----SSBEECTTCCGGGCSCCEECCCSSS
T ss_pred             CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc-----CCeEEECCCChhhCEEEEEEEeCCc
Confidence            34467789999999999986443367999999986432    12232221     4579999999999999999999988


Q ss_pred             CcceeEEEEEEEc-CCCcccccc--CCCCCCCCCcEEEEEEee-----cCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         91 AEDTQVQRLIVNV-PPKIESFAF--PFDGLPEGARTRVICGVT-----HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        91 ~~~~~~~~l~v~~-~p~~~~~~~--~~~~~~~g~~~~l~C~~~-----~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      +.....+.+.+.. +|.+...+.  ....+..|+.+.|.|.+.     .|.|.+.+.|++++..+.........    ..
T Consensus        86 g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~----~~  161 (315)
T 1itb_B           86 YCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG----VK  161 (315)
T ss_dssp             CCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEE----ET
T ss_pred             eEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEee----cC
Confidence            7766666666543 333321111  113466899999999873     58899999999999998654322211    13


Q ss_pred             eEEEEeecCCCCCeeEEEEEE-ccCcce---eeeEEEEEEeecCCCCCee--------eeeccceeeeccCccccc--cc
Q psy11132        163 SLLSINSVSAAHSGEYTCVAS-NTAAQA---RYSSKLQVKGNLNRLPPSY--------TLVFSQASYMSTSYYSFE--QD  228 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~-n~~g~~---~~~~~l~v~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~--~~  228 (243)
                      ..|.|.++..+|+|.|+|.|. |..|..   ...+.+.+.......+|.+        .+..+..+.+.|...+.|  .+
T Consensus       162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i  241 (315)
T 1itb_B          162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA  241 (315)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred             ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence            579999999999999999999 787866   3344444432222244443        445677788888776554  79


Q ss_pred             ceEEeCCee
Q psy11132        229 SWMIDNENY  237 (243)
Q Consensus       229 ~W~~~~~~~  237 (243)
                      .|++||..+
T Consensus       242 ~W~~~g~~i  250 (315)
T 1itb_B          242 YWKWNGSVI  250 (315)
T ss_dssp             EEEETTEEC
T ss_pred             EEEECCEEC
Confidence            999998654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.3e-26  Score=169.92  Aligned_cols=189  Identities=19%  Similarity=0.197  Sum_probs=141.8

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEE-ECCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWL-KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      +.|.|..+|.+...+....+.+|+.+.|.|.+. + |. +.+.|+ ++|..+....++....    ...|.|.+++.+|+
T Consensus        84 ~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~-p~~~~v~W~~~~g~~l~~~~~~~~~~----~~~L~i~~v~~~d~  157 (290)
T 2o26_X           84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT-D-PQVSQYSLIECDGKSLPTDLTFVPNP----KAGITIKNVKRAYH  157 (290)
T ss_dssp             EEEEEECSSCCBCCCCCEEEETTSCEEECCCBS-C-CSCEEEEEEETTSCCCCTTCEEEEET----TTEEEEESCCGGGT
T ss_pred             EEEEEeCCCcccccccceEEecCCeEEEeCcCC-C-CCCceEEEEeCCCcCCCCCCceeeCC----CCCEEEecccHHHC
Confidence            467788888777667778889999999999995 4 66 899995 5777776554433221    35799999999999


Q ss_pred             e-eEEEEEEeCCCc-ceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEec----C
Q psy11132         80 G-NYSCTVRNMVAE-DTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPL----S  148 (243)
Q Consensus        80 G-~Y~C~~~~~~~~-~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~----~  148 (243)
                      | .|+|.+.|..+. .+..+.|.|.    .+|.+...+.. ..+..|+.+.|.|.+. |.|.+. +.|++++..+    .
T Consensus       158 G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~-~~v~~G~~v~l~C~~~-g~p~p~~i~W~~~~~~~~~~~~  235 (290)
T 2o26_X          158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS-HLLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQPQHIAQ  235 (290)
T ss_dssp             TCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSB-CCCCTTCCEEEEEEEE-ESSTTCEEEEEEESSSEEECCC
T ss_pred             CCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCc-ceEecCCcEEEEEEEe-cCCcceeEEEecCCCCCcccee
Confidence            9 999999998554 3445777776    45555433333 5788999999999995 888885 9999998773    3


Q ss_pred             CCCCeeEEe--eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        149 PRFPVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       149 ~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .........  .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       236 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          236 VKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             EECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             ecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            222221111  12235789999999999999999999999999888888887

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.95  E-value=9.4e-27  Score=163.21  Aligned_cols=173  Identities=16%  Similarity=0.195  Sum_probs=124.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+.. .+.+|++++|.|.+. + +.+.+.|+|++..+......  .........|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGT-L-EAREYRLDKEESPAPWDRQN--PLEPKNKARFSIPSMTEDYAGRYRCYYR   78 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-T-TCCEEEEEETTSCSCSEEEC--CCSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCC-C-CCCEEEEEECCCCCcccccc--cccCCceEEEEeccCCcccCceEEEEEe
Confidence            46677766665 789999999999984 4 56799999999876532111  0011225789999999999999999999


Q ss_pred             eCCC--cceeEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeE
Q psy11132         88 NMVA--EDTQVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL  164 (243)
Q Consensus        88 ~~~~--~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  164 (243)
                      |..+  ..+..+.|.|...+..+ ....+...+.+|+.++|.|.+. + +++.+.|++++..+.................
T Consensus        79 n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 3p2t_A           79 SPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSR-S-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAE  156 (196)
T ss_dssp             ETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEE-E-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEE
T ss_pred             CCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecC-C-CCCEEEEEeCCCcccceeecccccccCcceE
Confidence            9877  34666778886532221 1112223567899999999984 5 4568999999987654322222222233578


Q ss_pred             EEEeecCCCCCeeEEEEEEccCc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      |.|.+++.+|+|.|+|.|.|..+
T Consensus       157 L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          157 FPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEeCCCcccCCCeEEEEEEcCCC
Confidence            99999999999999999999876

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.95  E-value=2.1e-26  Score=179.30  Aligned_cols=189  Identities=15%  Similarity=0.158  Sum_probs=135.8

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe-----eeeceEEEEeecCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-----DQYNSMLVIDSVSA   76 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~   76 (243)
                      +.|.+..+|.+.  +....+.+|+.+.|.|.+.+..|.+.+.|++++..+...........     ......|.|.+++.
T Consensus       222 ~~l~V~~~p~~~--~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  299 (423)
T 3qs7_E          222 FTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR  299 (423)
T ss_dssp             EEEESSSCCCSS--TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT
T ss_pred             EEEEEecCCccC--CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH
Confidence            456666666653  34677899999999999974477789999999988755432211111     11245799999999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCCCcccccc-CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  155 (243)
                      +|+|.|+|.|.|.   .+..+.|.|..+|.+...+. ....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+........
T Consensus       300 ~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~  375 (423)
T 3qs7_E          300 NDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGLD  375 (423)
T ss_dssp             TTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCCBCS
T ss_pred             HHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEE-EEcCCCeEEEEECCEECCCcccccc
Confidence            9999999999987   67778889988776544332 22567889999999999 6899999999999998865421000


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL  201 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~  201 (243)
                           ....+.......+|+|.|+|.|.|..|....++.|.|.+.+
T Consensus       376 -----~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          376 -----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             -----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             -----CCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence                 01122224567789999999999999999999999988543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=178.84  Aligned_cols=179  Identities=19%  Similarity=0.250  Sum_probs=137.2

Q ss_pred             CcccccCCeEEEEEEeeC---------CCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         18 ERTLNVGERASLICSITK---------GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~---------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ...+.+|+.+.|.|.+.+         +.|.+.+.|++++..+....+....... ....|.|.+++.+|+|.|+|.+.|
T Consensus       107 ~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n  185 (317)
T 2y25_A          107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFD  185 (317)
T ss_dssp             HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS-SEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             ceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC-CEEEEEECcCCcccCeeEEEEEEe
Confidence            344567888888877632         2678899999999998876665544332 246799999999999999999999


Q ss_pred             CCCcceeEEEEEEEc--------------------CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132         89 MVAEDTQVQRLIVNV--------------------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  148 (243)
Q Consensus        89 ~~~~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  148 (243)
                      ..+.....+.+.+..                    .|.+.........+..|+.+.|.|.+ .|.|.+.+.|++++..+.
T Consensus       186 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~  264 (317)
T 2y25_A          186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALA  264 (317)
T ss_dssp             SSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEEESSSEEC
T ss_pred             CCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEEECCEeCC
Confidence            888777666665431                    11111111222456789999999999 599999999999999988


Q ss_pred             CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ...........+....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       265 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            76665554443445789999999999999999999999999999999887

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=7e-27  Score=175.42  Aligned_cols=188  Identities=18%  Similarity=0.229  Sum_probs=141.7

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee--eeceEEEEeecCCCCCe
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD--QYNSMLVIDSVSARHSG   80 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G   80 (243)
                      .|.+..+|.+........+..|+.+.+.|.+.++.|.+.+.|++++..+...........+  ...+.|.|......|.|
T Consensus       111 ~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g  190 (313)
T 4fqp_A          111 WLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGK  190 (313)
T ss_dssp             EECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTC
T ss_pred             eeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCe
Confidence            4556677877766666778889999999988778888999999998776532221111000  11356889999999999


Q ss_pred             eEEEEEEeCCCcc--eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEe
Q psy11132         81 NYSCTVRNMVAED--TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        81 ~Y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      .|+|.+.|..+..  ...+.|.|..+|.+.........+..|+.+.|.|.+ .|.|.| .+.|++++..+....  ..  
T Consensus       191 ~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~~~~~~l~~~~--~~--  265 (313)
T 4fqp_A          191 NVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA-RSNPEPTGYNWSTTMGPLPPFA--VA--  265 (313)
T ss_dssp             EEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTE--EE--
T ss_pred             eEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe-cCCCCCcEEEEEECCEECCCce--EE--
Confidence            9999999977654  445566666667665444443456678999999999 588877 799999999876542  11  


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                         ....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       266 ---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          266 ---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             ---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence               13579999999999999999999999999999999988

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.94  E-value=1.8e-25  Score=163.93  Aligned_cols=195  Identities=16%  Similarity=0.220  Sum_probs=142.7

Q ss_pred             cccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEEEeeeeceEEEEeec---CCCCCee--EEEEEEeCCC
Q psy11132         19 RTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV---SARHSGN--YSCTVRNMVA   91 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--Y~C~~~~~~~   91 (243)
                      ..+.+|+.+.|.|.+.+..|.+  .+.|++++..+...    ....   ...+.+..+   +..|.|.  |+|.+.+..+
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~~---~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~   85 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTYG---NDSFSAKASVSVTAEDEGTQRLTCAVILGNQ   85 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEEC---SSEEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----EeeC---CCeEEEEeecccccccCCcceEEEEEecCCC
Confidence            4688999999999996447766  99999999887651    1111   234555544   7788884  9999999988


Q ss_pred             cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC
Q psy11132         92 EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS  171 (243)
Q Consensus        92 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  171 (243)
                      .....+.|.|...|...... ....+.+|+.+.|.|.+ .  |.+.+.|  +|..+....         ..+.|.|..+.
T Consensus        86 ~~~~~~~l~V~~~p~p~~~~-~~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~---------~~~~l~i~~~~  150 (265)
T 2oz4_A           86 SQETLQTVTIYSFPAPNVIL-TKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLG---------PRAQLLLKATP  150 (265)
T ss_dssp             EEEEEEEEEEECCCCCEEEE-SCSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCS---------SEECCEEECCG
T ss_pred             CcEEEEEEEEeCCCCceeec-CCceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCC---------CcEEEEEcccc
Confidence            88888889998755433222 23556789999999998 3  8899999  777663221         24568888888


Q ss_pred             CCCCeeEEEEEEccC-ccee---eeEEEEEEeecCC----CCCeeeeeccceeeeccCccccc--ccceEEeCC
Q psy11132        172 AAHSGEYTCVASNTA-AQAR---YSSKLQVKGNLNR----LPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNE  235 (243)
Q Consensus       172 ~~d~g~y~C~~~n~~-g~~~---~~~~l~v~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~  235 (243)
                      .+|+|.|+|.|.|.. |...   ..+.|.|...+..    .|....+..++.+.+.|...+.|  .+.|+++|.
T Consensus       151 ~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          151 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             GGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             ccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            999999999998644 6554   5567777643321    23355677788999999987665  899999987

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=1.1e-26  Score=177.88  Aligned_cols=192  Identities=13%  Similarity=0.081  Sum_probs=146.8

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+.           .....|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus       106 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~  173 (363)
T 1wio_A          106 THLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNI-----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID  173 (363)
T ss_dssp             SSEESBSCEEEEEECC-TTCCCCEEEECSSSCEE-----------EESSEEEECSBCGGGCEECEEEEEETTEEEEECCE
T ss_pred             eEEecCCCEEEEEEcC-CCCCCeEEEEcCCCccc-----------ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEE
Confidence            3578999999999995 67888999999875431           12678999999999999999999987666666677


Q ss_pred             EEEEcCCCccccccCCCCCCCCCcEEEEEEeecC-----CCCCEEEEEeCCEecCC--------CCCeeEEee-------
Q psy11132         99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG-----DPPLTIRWLKDGKPLSP--------RFPVNVSDL-------  158 (243)
Q Consensus        99 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~--------~~~~~~~~~-------  158 (243)
                      +.|..+|...    ....+.+|+.+.|.|.+ .+     .|.+.+.|+++|..+..        .........       
T Consensus       174 l~v~~~p~~~----~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (363)
T 1wio_A          174 IVVLAFQKAS----SIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQ  248 (363)
T ss_dssp             ECEECCSCSE----EEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCB
T ss_pred             EEEecCCCCC----CceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhh
Confidence            7777655543    12446789999999988 45     67889999999988765        222222110       


Q ss_pred             --ccceeEEEEeecCCCCCeeEEEEEEcc--CcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCccccc--c--cce
Q psy11132        159 --DSFSSLLSINSVSAAHSGEYTCVASNT--AAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFE--Q--DSW  230 (243)
Q Consensus       159 --~~~~~~l~i~~~~~~d~g~y~C~~~n~--~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~--~~W  230 (243)
                        ......|.|.++..+|+|.|+|.|.|.  .|.....+.|.|..           ..+..+.+.|.....+  .  +.|
T Consensus       249 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-----------v~g~~~~l~C~~~g~p~p~~~i~W  317 (363)
T 1wio_A          249 MGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-----------ATQLQKNLTCEVWGPTSPKLMLSL  317 (363)
T ss_dssp             CCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-----------ECCCSSSEEEEEESSCCTTCCEEE
T ss_pred             cccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-----------ecCCCeeEEEEEccccCCCccEEE
Confidence              112358999999999999999999999  89888888888771           1166678888776553  5  999


Q ss_pred             EEeCCeeE
Q psy11132        231 MIDNENYV  238 (243)
Q Consensus       231 ~~~~~~~~  238 (243)
                      +++|+.+.
T Consensus       318 ~~~~~~~~  325 (363)
T 1wio_A          318 KLENKEAK  325 (363)
T ss_dssp             ECSSSSCS
T ss_pred             EeCCCcee
Confidence            99987654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.94  E-value=7.1e-26  Score=167.98  Aligned_cols=191  Identities=20%  Similarity=0.279  Sum_probs=142.0

Q ss_pred             eeEEEecCCC-ccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132          2 LVIFSTVPPK-LSPTNPERTLNVGERASLICSITKGDIPL-TIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus         2 ~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +.|.|..+|. +...+....+.+|+.+.|.|.+. +.+.+ .+.|++ ++..+....++....    ...|.|.+++.+|
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d  155 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQVLRKTVYFFSP----WRGFIIRKAKVLD  155 (289)
T ss_dssp             EEEEECCSSCSEEESCSEEEEETTSCEEECEEES-CGGGGGSEEEEEGGGEECCTTCCEEEET----TTEEEESSCCGGG
T ss_pred             EEEEEeCCCcceecccceEEEecCCceEeEEEcc-CCCcceEEEEEecCCeecCCCccEEECC----CCCEEEeeccccc
Confidence            4567777776 34556678899999999999995 54444 499987 566665555544322    4579999999999


Q ss_pred             CeeEEEEEE-eCCCcceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         79 SGNYSCTVR-NMVAEDTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        79 ~G~Y~C~~~-~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      +|.|+|.+. +..+..+..+.|.|.    .+|.+...+.. ..+..|+.+.|.|.+..+.|.+.+.|++++..+......
T Consensus       156 ~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  234 (289)
T 3ejj_X          156 SNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK-LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS  234 (289)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSS-EECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEE
T ss_pred             CEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCc-eEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCc
Confidence            999999999 444456677888887    34444433322 445789999999999643789999999999988754322


Q ss_pred             eEE-eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        154 NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       154 ~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ... ......+.|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          235 DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             EECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred             ccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence            111 011125789999999999999999999999999999988876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.94  E-value=6.1e-27  Score=178.16  Aligned_cols=181  Identities=20%  Similarity=0.256  Sum_probs=143.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe-eEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG-NYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~   86 (243)
                      .+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......   ........|.|.+++.+|+| .|+|.+
T Consensus       157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~-g~p~p~i~W~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~~Y~C~a  232 (347)
T 2ifg_A          157 GVPTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMK---SGGLPSLGLTLANVTSDLNRKNVTCWA  232 (347)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEE-CSSCCCCCEEESCCCSSEEECC---CCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             CCCceeccCCceEEeCCCcEEEEEEEe-cCCCCEEEEEcCCceeeccccc---ceecccceEEEeeCChHHCCCeEEEEE
Confidence            477887777788899999999999995 7888899999998764322111   01223578999999999999 999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec------c
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------S  160 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~------~  160 (243)
                      .+..+..+..+.|.|..+|.+ . .   .....|+.+.|.|.+ .|.|.|.+.|+++|..+............      .
T Consensus       233 ~n~~g~~~~~~~l~V~~~P~i-~-~---~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  306 (347)
T 2ifg_A          233 ENDVGRAEVSVQVNVSFPASV-Q-L---HTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV  306 (347)
T ss_dssp             EETTEECCEEECCCCBEEEEE-E-E---CCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCC
T ss_pred             EcCCCCEEEEEEEEEcCCCee-e-e---ccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcc
Confidence            999888877888888777765 1 1   234578999999999 58899999999999998855443222111      2


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..+.|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            35779999999999999999999999999888888877

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.94  E-value=5.1e-26  Score=156.59  Aligned_cols=166  Identities=14%  Similarity=0.188  Sum_probs=125.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+....+.+|+.++|.|.+. +.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~-~~p~~~~~~W~~~~~~~~~~-----------~~~L~i~~~~~~d~G~Y~C~~   73 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGA-YSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQT   73 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECC-CBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEEC
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCC-CCCCCcceEEEECCEEccCC-----------ceEEEEeCCCcccCEEEEEEe
Confidence            467777777777899999999999985 55554 48999999877542           567999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (243)
                      .+..+  +..+.|.|..++....  .....+.+|+.+.|.|.+..+.|++.+.|++++..+...         .....|.
T Consensus        74 ~n~~~--s~~~~l~V~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~---------~~~~~L~  140 (175)
T 1fnl_A           74 NLSTL--SDPVQLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------HHNSDFH  140 (175)
T ss_dssp             SSSCC--CCCEEEEEECSSEEEE--CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------EECCCEE
T ss_pred             eCCcc--cccEEEEEeCCCceee--CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC---------CCCCEEE
Confidence            87544  4556777764433222  222456789999999999433345699999999876321         1246799


Q ss_pred             EeecCCCCCeeEEEEEEccCcc-eeeeEEEEEE
Q psy11132        167 INSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  198 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v~  198 (243)
                      |.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus       141 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          141 IPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            9999999999999999997654 4566777776

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.94  E-value=6.8e-26  Score=169.35  Aligned_cols=184  Identities=22%  Similarity=0.397  Sum_probs=135.1

Q ss_pred             eEEEecC-------CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc-eEEEEeeeeceEEEEeec
Q psy11132          3 VIFSTVP-------PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQYNSMLVIDSV   74 (243)
Q Consensus         3 ~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~   74 (243)
                      .|.|..+       |.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ......  ....|.|.++
T Consensus        95 ~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~L~i~~~  171 (304)
T 2yd9_A           95 KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQL--RSGALQIESS  171 (304)
T ss_dssp             EEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEE-CSSCCEEEEEETTEECCGGGGTTSEEEC--TTSCEEECSC
T ss_pred             EEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECc-cCCCCeEEEEECCEECcCCCCcceEEeC--CCeEEEEccC
Confidence            4556554       5666666777889999999999995 788889999999988865321 111111  2458999999


Q ss_pred             CCCCCeeEEEEEEeCCCccee-EEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC
Q psy11132         75 SARHSGNYSCTVRNMVAEDTQ-VQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  150 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  150 (243)
                      +.+|+|.|+|.+.|..+.... ...+.|..   +|.+...+. ...+..|+.+.|.|.+ .|.|.+.+.|++++..+...
T Consensus       172 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~-~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          172 EETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM-SHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCC-CBCCCTTCCEEEEEEE-EEESCCEEEEEETTEECSCS
T ss_pred             CcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCC-ceEEcCCCeEEEEEEE-eeeCCCEEEEEECCEECCCc
Confidence            999999999999998876432 24555542   343333222 2567899999999999 58899999999999988765


Q ss_pred             CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        151 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ....     .....|.+.++  +|+|.|+|.|.|..|....++.|.|.
T Consensus       250 ~~~~-----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          250 DDMP-----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             SSCC-----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             cccc-----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            4321     12345666654  68999999999999999999999988

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.94  E-value=1.8e-25  Score=181.15  Aligned_cols=214  Identities=14%  Similarity=0.105  Sum_probs=153.7

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCC---ceeEEEECCeeec--------------CCCceEEEEe-eeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIP---LTIKWLKDGRYLD--------------NSAALSITHV-DQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~--------------~~~~~~~~~~-~~~~~~l~i~~~~~~   77 (243)
                      +..+.+.+|+.+.|.|.+. +.+.   ..+.|+|++..+.              ...++.+... ..+...|.|.+++.+
T Consensus         7 P~~v~v~~G~~v~L~C~~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            7 PEEVNSVEGNSVSITCYYP-PTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             cceeEEecCCcEEEEEeCC-CCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            5567799999999999985 4443   3899999875321              1123333221 222467999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC----C----
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS----P----  149 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~----~----  149 (243)
                      |+|.|+|.+.+..+..+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+..+.+++.+.|++++....    .    
T Consensus        86 D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~  164 (585)
T 2ocw_A           86 DSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV-YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY  164 (585)
T ss_pred             cCEEEEEEcccCCCCceEEEEEEEecCccccCCCcc-EEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence            999999999988887788889999888876544332 5678999999999995455677899999875421    0    


Q ss_pred             -----CCCeeEEe--eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCc
Q psy11132        150 -----RFPVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSY  222 (243)
Q Consensus       150 -----~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~  222 (243)
                           ..+.....  .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...   .|..+.+..++.+.+.|..
T Consensus       165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~---~p~~~~~~~G~~v~l~C~~  241 (585)
T 2ocw_A          165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP---EPELVYEDLRGSVTFHCAL  241 (585)
T ss_pred             cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC---CCceeEEcCCCcEEEEEEc
Confidence                 11111111  1112347999999999999999999999998888888888721   2334556778899999985


Q ss_pred             ccc----cccceE-EeC
Q psy11132        223 YSF----EQDSWM-IDN  234 (243)
Q Consensus       223 ~~~----~~~~W~-~~~  234 (243)
                      ...    +.+.|+ ++|
T Consensus       242 ~~~~~~~~~~~w~~~~g  258 (585)
T 2ocw_A          242 GPEVANVAKFLCRQSSG  258 (585)
T ss_pred             CCCCCCceEEEEEeCCC
Confidence            322    367786 776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.94  E-value=8.9e-26  Score=174.99  Aligned_cols=172  Identities=23%  Similarity=0.359  Sum_probs=139.1

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      ...+.+|+.+.|.|.+. +.|.+.+.|++++..+......    .......|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus       231 ~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  305 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDLPSDKAK----FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI  305 (404)
T ss_dssp             EEEEETTSCEEEECCBC-CSSCCEEEEEETTBCCCTTTEE----EEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CceEecCCCEEEEEEEC-CCCCCcEEEEECCEECCCCccc----ccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence            35688999999999984 7788899999999888654431    112256899999999999999999999999888889


Q ss_pred             EEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132         98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus        98 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      .|.|..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+.+.|+++|..+...........  ....|.|.++..+|+|.
T Consensus       306 ~l~V~~~p~~~~~~~~-~~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~  381 (404)
T 3p3y_A          306 SVRVKAAPYWLDEPKN-LILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSAPPNPNREV--AGDTIIFRDTQISSRAV  381 (404)
T ss_dssp             EEEEEEEEEEEECCCC-EEECTTCCEEEECEE-EEESCCEEEEEETTEEGGGSCCCTTEEE--ETTEEEESSCCSSCCCE
T ss_pred             EEEEeCCCeeeccCCc-ceeecCCcEEEEEEc-cccCCCceEEEECCEecCCCCCCceEEe--cCCEEEEeecCHHHCEE
Confidence            9999887766544332 557789999999999 5899999999999998875432111111  13579999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEE
Q psy11132        178 YTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       178 y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |+|.|.|..|....++.|.|.
T Consensus       382 Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          382 YQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEEEE
Confidence            999999999999999888876

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=4.8e-27  Score=177.57  Aligned_cols=220  Identities=14%  Similarity=0.180  Sum_probs=148.2

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCC---CCceeEEEECC--ee-------------e--cCCCceEEEEeeeeceEEE
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGD---IPLTIKWLKDG--RY-------------L--DNSAALSITHVDQYNSMLV   70 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~--~~-------------~--~~~~~~~~~~~~~~~~~l~   70 (243)
                      .+...+....+.+|+++.|.|.+....   +.+.+.|++++  ..             +  ....++.+........+|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            344446678899999999999985321   34589999954  11             1  1123333322222356799


Q ss_pred             EeecCCCCCeeEEEE-EEeCCCcceeEEEEEEEcCCCccccc-cCCCCCCCC---CcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132         71 IDSVSARHSGNYSCT-VRNMVAEDTQVQRLIVNVPPKIESFA-FPFDGLPEG---ARTRVICGVTHGDPPLTIRWLKDGK  145 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~g---~~~~l~C~~~~~~p~~~~~W~~~~~  145 (243)
                      |.+++.+|+|.|+|. +.+..+.....+.|.|..+|.+.... .....+..|   +.+.|.|.+..+.|.+.+.|++++.
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~  175 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK  175 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             EcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCC
Confidence            999999999999998 45556667778889998887764322 222345667   7899999844789999999999532


Q ss_pred             ecCCCCCeeEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeee--------eeccc
Q psy11132        146 PLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT--------LVFSQ  214 (243)
Q Consensus       146 ~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~--------~~~~~  214 (243)
                      .....  .......   ...+.|.|..+..+|+|.|+|.|.|..|.....+.|.|.     .+|.+.        +..+.
T Consensus       176 ~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~-----~~P~~~~~~~~~~~~~~g~  248 (331)
T 3u83_A          176 GEAEY--QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-----YEPEVTIEGFDGNWYLQRM  248 (331)
T ss_dssp             CEEEE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE-----EEEEEEEECCCSCCBTTCC
T ss_pred             Ccccc--ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe-----cCCeEEEecCCCceEeCCC
Confidence            21100  0000001   113568888889999999999999999988888888876     333332        34467


Q ss_pred             eeeeccCccccc--c-cceEEeCCee
Q psy11132        215 ASYMSTSYYSFE--Q-DSWMIDNENY  237 (243)
Q Consensus       215 ~~~~~~~~~~~~--~-~~W~~~~~~~  237 (243)
                      .+.+.|.....|  . +.|+++++.+
T Consensus       249 ~~~l~C~~~g~p~p~~i~W~~~~~~~  274 (331)
T 3u83_A          249 DVKLTCKADANPPATEYHWTTLNGSL  274 (331)
T ss_dssp             CEEEEEEEEEESCCCEEEEEETTBSC
T ss_pred             eEEEEEeCcCCCCCCEEEEEECCCcc
Confidence            788899876654  5 9999998754

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=5.1e-26  Score=175.92  Aligned_cols=174  Identities=23%  Similarity=0.370  Sum_probs=138.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......+.... .....|.|.+++.+|+|.|+|.+.|..+...
T Consensus       219 ~~~~~~~~G~~v~l~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  297 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ  297 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEE-CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCceEEECCCcEEEEEEec-cCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCce
Confidence            3456789999999999995 7888899999999988654332222111 1234899999999999999999999988754


Q ss_pred             e-EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCC
Q psy11132         95 Q-VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA  173 (243)
Q Consensus        95 ~-~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (243)
                      . .+.|.|..+|.+...+.....+..|+.+.|.|.+ .|.|.+.+.|+++|..+... .....     ...|.|.++..+
T Consensus       298 ~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~-~~~~~-----~~~L~i~~~~~~  370 (395)
T 1bih_A          298 KHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGG-RATVT-----DSGLVIKGVKNG  370 (395)
T ss_dssp             EEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCSS-SEEEE-----TTEEEESSCCST
T ss_pred             EEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEE-CcccCCeeEEEECCEECCCC-ceEEE-----CCEEEEeeCCcc
Confidence            4 8889998888766543322456889999999999 58899999999999998754 22221     248999999999


Q ss_pred             CCeeEEEEEEccCcceeeeEEEEE
Q psy11132        174 HSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       174 d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+|.|+|.|.|..|....++.|.|
T Consensus       371 d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          371 DKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             TCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCEEEEEEEEccCCCceEEEEEEE
Confidence            999999999999999988888876

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=2.6e-25  Score=174.88  Aligned_cols=221  Identities=17%  Similarity=0.204  Sum_probs=145.0

Q ss_pred             eeEEEecCCCcc-CCCCCcccccCCeEEEEEEeeCCCCCc---eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCC
Q psy11132          2 LVIFSTVPPKLS-PTNPERTLNVGERASLICSITKGDIPL---TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus         2 ~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +.|.+..+|.+. ..+....+.+|+.+.|.|.+. +.+++   .+.|+|++..+.......    ......|.|.+++.+
T Consensus        78 ~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~-g~~~~~~~~v~W~k~g~~l~~~~~~~----~~~~~~L~i~~~~~~  152 (450)
T 1z7z_I           78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE-GGAPRANLTVVLLRGEKELKREPAVG----EPAEVTTTVLVRRDH  152 (450)
T ss_dssp             CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEE-CCBCGGGEEEEEEETTEEEEEEECCT----TTEEEEEEEECCSSC
T ss_pred             EEEEEEeCCCcceecCCCceEeeCCeEEEEEEec-CCCCCcCcEEEEeeCCEEeecccccc----cccceEEEEEeeccc
Confidence            356777788766 455667899999999999996 65665   899999998876432211    112468999999999


Q ss_pred             CCeeEEEEEEeCCCcce--------eEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCC-C--CCEEEEEeCCEe
Q psy11132         78 HSGNYSCTVRNMVAEDT--------QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGD-P--PLTIRWLKDGKP  146 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~--------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p--~~~~~W~~~~~~  146 (243)
                      |+|.|+|.+.|..+...        ....+.|...|...........+.+|+.+.|.|.+. |. |  .+.+.|++++..
T Consensus       153 d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~-g~~P~~~~~~~W~~~~~~  231 (450)
T 1z7z_I          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD-GLFPVSEAQVHLALGDQR  231 (450)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEE-SCTTGGGCEEEEEETTEE
T ss_pred             cCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEee-CCCCCCceEEEEeCCCEe
Confidence            99999999999866432        334445543321111111114567899999999995 66 7  789999999998


Q ss_pred             cCCCCCeeEEeeccceeEEEEeecCCCCCe--eEEEEEEccCcceeeeEEEEEEeecCCCCCee-----eeeccceeeec
Q psy11132        147 LSPRFPVNVSDLDSFSSLLSINSVSAAHSG--EYTCVASNTAAQARYSSKLQVKGNLNRLPPSY-----TLVFSQASYMS  219 (243)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~-----~~~~~~~~~~~  219 (243)
                      +...  .. ...+.....+.+ ++..+|+|  .|+|.|.|..|.....+.|.|...+   +|.+     .+..++.+.+.
T Consensus       232 ~~~~--~~-~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~---~p~i~~~~~~v~~G~~v~l~  304 (450)
T 1z7z_I          232 LNPT--VT-YGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP---APNVILTKPEVSEGTEVTVK  304 (450)
T ss_dssp             CCCE--EE-EETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC---CCEEEESCSEEETTCEEEEE
T ss_pred             CCce--EE-ecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC---CCeEecCCeeEeCCCcEEEE
Confidence            8762  11 111111122222 67899999  9999999999988888888887322   3444     34567888899


Q ss_pred             cCcccccccceEEeCCee
Q psy11132        220 TSYYSFEQDSWMIDNENY  237 (243)
Q Consensus       220 ~~~~~~~~~~W~~~~~~~  237 (243)
                      |.....+.++|  +|..+
T Consensus       305 C~~~p~p~i~W--~g~~~  320 (450)
T 1z7z_I          305 CEAHPRAKVTL--NGVPA  320 (450)
T ss_dssp             EEC---------------
T ss_pred             EecCCCCEeEE--CCEEc
Confidence            98886679999  66554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.94  E-value=2.4e-26  Score=161.40  Aligned_cols=185  Identities=17%  Similarity=0.176  Sum_probs=123.6

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +.+|.+...+. ..+.+|++++|.|.+. +.+. .+.|+|++..+.......  ........|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGG-QETQ-EYRLYREKKTAPWITRIP--QELVKKGQFPIPSITWEHTGRYRCYY   77 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECC-TTCC-CEEEEESSSCCHHHHTSC--HHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEec-CCCc-EEEEEECCcccccccccc--ccCCcccEEEECCCCHHHCeEEEEEE
Confidence            35677776665 4789999999999985 5554 799999998764211100  01112578999999999999999999


Q ss_pred             EeCC-C--cceeEEEEEEEcCC-CccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe-eEEeeccc
Q psy11132         87 RNMV-A--EDTQVQRLIVNVPP-KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSDLDSF  161 (243)
Q Consensus        87 ~~~~-~--~~~~~~~l~v~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~  161 (243)
                      .|.. +  ..+..+.|.|...+ .......+...+.+|+.+.|.|.+ .+. .+.+.|++++..+...... ........
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~  155 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS-QVA-FDGFILCKEGEDEHPQCLNSQPHARGSS  155 (198)
T ss_dssp             EETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEC-SSC-CSEEEEEEC------CEEEC------CC
T ss_pred             ECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEec-CCC-CcEEEEEECCCccCCccccccccCCCcc
Confidence            9976 4  34667788887732 222222222457789999999999 466 7899999999876533211 11111223


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcce-----eeeEEEEEE
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQA-----RYSSKLQVK  198 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~-----~~~~~l~v~  198 (243)
                      ...|.|.+++.+|+|.|+|.|.|..+..     +..+.|.|.
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             eeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            5789999999999999999999987532     344556554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.94  E-value=9.8e-26  Score=158.59  Aligned_cols=176  Identities=22%  Similarity=0.257  Sum_probs=125.1

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECC-eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      .+.+|+.+.|.|.+. |.|.+.+.|+++. ..+.  ...  . .......|.|.+++.+|+|.|+|.+.|..+..+..+.
T Consensus        12 ~~~~G~~v~L~C~~~-g~P~p~i~W~~~~~~~~~--~~~--~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~   85 (202)
T 1vca_A           12 LAQIGDSVSLTCSTT-GCESPFFSWRTQIDSPLN--GKV--T-NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (202)
T ss_dssp             EEETTSCEEEEEEEE-SCSSCEEEEEETTCCCCS--SEE--E-EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEcCCCcEEEEEeec-CCCCCeEEEECCCCCCcc--ceE--E-EcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence            345999999999995 7788899999843 2221  111  1 1112457999999999999999999998887778889


Q ss_pred             EEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeCCEecCCCCCeeE---EeeccceeEEEEeecCCC
Q psy11132         99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNV---SDLDSFSSLLSINSVSAA  173 (243)
Q Consensus        99 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~  173 (243)
                      |.|..+|........ ..+.+|+.++|.|.+.++.|.  +.+.|++++..+........   .........|.|.....+
T Consensus        86 l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d  164 (202)
T 1vca_A           86 VEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED  164 (202)
T ss_dssp             EEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGG
T ss_pred             EEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeecc
Confidence            999887765544444 567899999999999644454  48999999987643210000   000112345678887888


Q ss_pred             CCeeEEEEEEccCcc-------eeeeEEEEEEeecCCCCCe
Q psy11132        174 HSGEYTCVASNTAAQ-------ARYSSKLQVKGNLNRLPPS  207 (243)
Q Consensus       174 d~g~y~C~~~n~~g~-------~~~~~~l~v~~~~~~~~p~  207 (243)
                      |.|.|+|.|.|..+.       .+.++.|.|.     .||.
T Consensus       165 ~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~-----y~P~  200 (202)
T 1vca_A          165 IGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY-----ISPK  200 (202)
T ss_dssp             TTCEEEEEEEECSCCCTTSCSEEEEEEECCEE-----CCC-
T ss_pred             CCCeEEEEEEccccCCCCcceeEeeEEEEEEe-----cCCC
Confidence            899999999998875       3456777787     7775

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=161.20  Aligned_cols=174  Identities=15%  Similarity=0.172  Sum_probs=113.3

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..+|.+...+. ..+.+|++++|.|.+. +.+. .+.|+|++..+......  .........|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 2d3v_A            3 LSKATLWAEPG-SVISRGNSVTIRCQGT-LEAQ-EYRLVKEGSPEPWDTQN--PLEPKNKARFSIPSMTEHHAGRYRCYY   77 (196)
T ss_dssp             CCBCEEEEESC-SEEETTCCEEEEEECC-TTCC-EEEEEETTCSSCSEEEC--CCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeCCC-CcccCCCeEEEEEeCC-CCCc-EEEEEECCCCCCccccc--ccCCccccEEEeccCChhHCeEEEEEE
Confidence            45677776665 4788999999999985 5555 99999999866432110  001122578999999999999999999


Q ss_pred             EeCCCc--ceeEEEEEEEcCCC-ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCee-EEeeccce
Q psy11132         87 RNMVAE--DTQVQRLIVNVPPK-IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-VSDLDSFS  162 (243)
Q Consensus        87 ~~~~~~--~~~~~~l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~  162 (243)
                      .+..+.  .+..+.|.|...+. ......+...+.+|+.++|.|.+ .+.| +.+.|++++..+....... ........
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 2d3v_A           78 YSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQ  155 (196)
T ss_dssp             EETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE-SSCC-SEEEEEEC---CCEEEEECEECTTSCEE
T ss_pred             eCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc-CCCC-CEEEEEccCCcccccccccccccCCCce
Confidence            987653  34567788876321 11111222467899999999999 5777 8999999998765321110 11111234


Q ss_pred             eEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        163 SLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..|.|.+++.+|+|.|+|.|.|..+
T Consensus       156 ~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          156 ALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             eEEEeeecCcccCeeEEEEEEccCC
Confidence            7899999999999999999999765

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.94  E-value=5.7e-26  Score=155.61  Aligned_cols=163  Identities=17%  Similarity=0.284  Sum_probs=123.4

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      |.+...+....+.+|+.+.|.|.+. +.+ .+.+.|++++..+....           ..+.+.+++.+|+|.|+|.+.+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~-~~p~~~~~~W~~~g~~~~~~~-----------~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGA-RSPESDSIQWFHNGNLIPTHT-----------QPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESC-CCSSSSCEEEEETTEECTTCC-----------SSEEEEECCGGGCEEEEEEETT
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEec-CCCCcceEEEEECCeEcccCc-----------cceEEEecccccCeEEEEEEeC
Confidence            4455556667799999999999996 444 67999999999887542           2356778999999999999986


Q ss_pred             CCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEe
Q psy11132         89 MVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN  168 (243)
Q Consensus        89 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~  168 (243)
                      ..  .+..+.|.|..++....  .+...+.+|+.+.|.|.+..+.|.+.+.|++++..+...         .....|.|.
T Consensus        73 ~~--~s~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~---------~~~~~L~i~  139 (170)
T 3ry4_A           73 TS--LSDPVHLTVLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS---------HLDPTFSIP  139 (170)
T ss_dssp             SB--CCCCEEEEEECCSEEEE--CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE---------SSCCEEEES
T ss_pred             CC--ceEeEEEEEECCceEec--CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc---------CCCCeEEEE
Confidence            43  34456777776553332  222456789999999999656677999999999875421         124679999


Q ss_pred             ecCCCCCeeEEEEEEccCcc-eeeeEEEEE
Q psy11132        169 SVSAAHSGEYTCVASNTAAQ-ARYSSKLQV  197 (243)
Q Consensus       169 ~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v  197 (243)
                      ++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       140 ~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          140 QANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            99999999999999999986 345566655

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=3.6e-27  Score=176.61  Aligned_cols=189  Identities=15%  Similarity=0.196  Sum_probs=138.1

Q ss_pred             eEEEecCCCcc--CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132          3 VIFSTVPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus         3 ~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .+.+..+|.+.  ..+.......|+.+.|.|.+..+.|.+.+.|++++..+...............+.|.|..+...|.|
T Consensus       106 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g  185 (308)
T 4fom_A          106 TVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGR  185 (308)
T ss_dssp             EEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTC
T ss_pred             EEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCc
Confidence            34455555433  3345566778999999998766888899999999987654221111111112457999999999999


Q ss_pred             eEEEEEEeCCCcc--eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEe
Q psy11132         81 NYSCTVRNMVAED--TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        81 ~Y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      .|+|.+.|..+..  ...+.|.|..+|.+.........+..|+.+.|.|.+ .|.|++ .+.|++++..+.....     
T Consensus       186 ~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~k~~~~~~~~~~-----  259 (308)
T 4fom_A          186 RITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNA-DANPPPFKSVWSRLDGQWPDGLL-----  259 (308)
T ss_dssp             EEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCE-EEESCEEEEECCBSSSCCCSSCB-----
T ss_pred             cEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEE-ecCCCCcEEEEEECCeECCCcEE-----
Confidence            9999999987654  445566666667665544443456678999999999 588877 7999999887764321     


Q ss_pred             eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                       ......|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       260 -~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          260 -ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             -CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             -EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence             1123567788999999999999999999999999999998

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.94  E-value=6.8e-26  Score=168.08  Aligned_cols=213  Identities=17%  Similarity=0.215  Sum_probs=150.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+....+.+|+.+.|.|.+. +    .+.|++++....     . .........|.|.+++.+|+|.|+|.+.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~-~----~v~W~~~~~~~~-----~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   71 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSN-G----SVEWDGPISPYW-----T-LDPESPGSTLTTRNATFKNTGTYRCTEL   71 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECS-S----CCEEECSCSSSS-----E-ECCCSSCCEEEESSCCGGGCEEEEEECC
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeC-C----cEEEccCCCceE-----E-EeccCCccEEEEeeeccccCEEEEEEEe
Confidence            456777777788899999999999984 4    499997764321     1 1112235789999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEe-CCEecCCCCCeeEEeeccceeEE
Q psy11132         88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLK-DGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      +..+..+..+.|.|..+|...........+.+|+.+.|.|.+. +.+.+ .+.|++ ++..+..........    ...|
T Consensus        72 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~L  146 (289)
T 3ejj_X           72 EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQVLRKTVYFFSP----WRGF  146 (289)
T ss_dssp             C-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEES-CGGGGGSEEEEEGGGEECCTTCCEEEET----TTEE
T ss_pred             ccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEcc-CCCcceEEEEEecCCeecCCCccEEECC----CCCE
Confidence            8888788888999988776533333335677899999999994 65554 499986 666665544333321    3469


Q ss_pred             EEeecCCCCCeeEEEEEE-ccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCccc-c--cccceEEeC
Q psy11132        166 SINSVSAAHSGEYTCVAS-NTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYS-F--EQDSWMIDN  234 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~-n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~-~--~~~~W~~~~  234 (243)
                      .|.++..+|+|.|+|.|. +..+.....+.|.|..... .+|.+..       ..+..+.+.|.... .  +.+.|+++|
T Consensus       147 ~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~-~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~  225 (289)
T 3ejj_X          147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP-EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD  225 (289)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCC-CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETT
T ss_pred             EEeecccccCEEEEEEEEeCCCccccccEEEEEEECCC-CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECC
Confidence            999999999999999999 5556666778888874322 4555544       34667778887755 2  489999998


Q ss_pred             Cee
Q psy11132        235 ENY  237 (243)
Q Consensus       235 ~~~  237 (243)
                      ..+
T Consensus       226 ~~~  228 (289)
T 3ejj_X          226 TKL  228 (289)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.94  E-value=7.7e-26  Score=174.54  Aligned_cols=162  Identities=27%  Similarity=0.411  Sum_probs=132.5

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++..+.      ...+..     .....|.|.+++.+|+|.|+|.+.|..
T Consensus       220 ~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~  293 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVK-----QVSGTLIIKDAVVEDSGKYLCVVNNSV  293 (388)
T ss_dssp             CCEEEETTSCEEECCCCE-EESCCEEEEEEECTTSSCEEECCCSSSEE-----EETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CceEEeeCCcEEEEEECC-CCCCCEEEEEecCCCCcccccccccCcee-----cccCEEEECcCCHHHCeEEEEEEecCC
Confidence            345688899999999985 77888999999754321      122222     125689999999999999999999999


Q ss_pred             CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec
Q psy11132         91 AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus        91 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  170 (243)
                      +..+..+.|.|..+|.+...+. ...+..|+.+.|.|.+ .|.|.+.+.|+++|..+...           .+.|.|.++
T Consensus       294 g~~~~~~~l~V~~~p~~~~~~~-~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~i~~~-----------~~~L~i~~v  360 (388)
T 2v5m_A          294 GGESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHS-----------ESVLRIESV  360 (388)
T ss_dssp             CEEEEEEEEEEEEEEEEEEESS-EEEECTTSCEEEEEEE-EEECCCEEEEEETTEECSCC-----------SSEEEESSC
T ss_pred             CceeEEEEEEEeCCCccccCCC-cEEecCCCCEEEEEEe-ccccCCeEEEEECCEECccC-----------CCEEEEecC
Confidence            9888888899988776554332 2567889999999999 68899999999999988643           367999999


Q ss_pred             CCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        171 SAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      ..+|+|.|+|.|.|..|....++.|.|
T Consensus       361 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          361 KKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            999999999999999999988888875

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.94  E-value=2.3e-25  Score=157.51  Aligned_cols=172  Identities=18%  Similarity=0.230  Sum_probs=127.6

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-------------------CceEEEEeeeeceEEEEeecCCC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-------------------AALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      ....+.+|+++.|.|.. .+.+.+.+.|++++......                   .+..+.    .+.+|.|.+++.+
T Consensus         7 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~i~~v~~~   81 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY----SNGSLLFQMITMK   81 (208)
T ss_dssp             ESSEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC----TTSCEEECSCCGG
T ss_pred             ccceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe----cCCeEEEcccccc
Confidence            34568899999999996 46777799999875432211                   111111    1357999999999


Q ss_pred             CCeeEEEEEEeCC-CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         78 HSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        78 d~G~Y~C~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      |+|.|+|.+.+.. +.....+.|.|..++..+........+..|+.+.|.|.+ .+.| +.+.|++++..+.........
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~~~~~~~~~  159 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQLTERMTLS  159 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC-SCTT-CEEEEEETTEECCCCSSEEEE
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC-CCCC-CceEEEECCEeCCCCCCeEEc
Confidence            9999999999875 456677788887765433332222337889999999999 5655 799999999998866544333


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                      .   ....|.|.++..+|+|.|+|.|.|..|... ..++|.|.
T Consensus       160 ~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          160 Q---NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             T---TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             C---CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            2   236799999999999999999999999865 45777776

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=8.4e-25  Score=151.67  Aligned_cols=165  Identities=23%  Similarity=0.408  Sum_probs=124.2

Q ss_pred             cccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         19 RTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      ..+.+|+.++|.|.+. +.+.+  .+.|++++..+.......      ....|.|.  +.+|+|.|+|.+.+   .....
T Consensus         8 ~~v~~G~~v~l~C~~~-~~~~p~~~~~W~k~~~~l~~~~~~~------~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~   75 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLN-DSATEVTGHRWLKGGVVLKEDALPG------QKTEFKVD--SDDQWGEYSCVFLP---EPMGT   75 (184)
T ss_dssp             EEEEETTEEEEEEEEE-SCSSCCCEEEEESSSEEEECTTCCC------SEEEEEEC--GGGCCEEEEEEEES---TTSCE
T ss_pred             EEEecCCCEEEEEECC-CCCCCceEEEEEeCCEEeecccccC------CcEEEEEe--chhhCeEEEEEEEC---CcCcE
Confidence            4578999999999986 44544  899999998887654221      13445555  68999999999997   33466


Q ss_pred             EEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEe---CC-EecCCC--CCeeEEeeccceeEEEEee
Q psy11132         97 QRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLK---DG-KPLSPR--FPVNVSDLDSFSSLLSINS  169 (243)
Q Consensus        97 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~---~~-~~~~~~--~~~~~~~~~~~~~~l~i~~  169 (243)
                      +.|.|..+|.+...+.. ..+..|+.+.|.|.+ .+.| .+.+.|++   ++ ..+...  ..+... .....+.|.|.+
T Consensus        76 ~~l~V~~~P~~~~~~~~-~~~~~g~~~~l~C~~-~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~  152 (184)
T 3b5h_A           76 ANIQLHGPPRVKAVKSS-EHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVS-SSQGRSELHIEN  152 (184)
T ss_dssp             EEEEECCSCCCEESCSE-EEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEE-EETTEEEEEECS
T ss_pred             EEEEEecCCceeecCCC-cEEcCCCcEEEEEEE-CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEE-ecCCeeEEEEee
Confidence            78888888877654422 457789999999999 5888 79999999   44 444322  222222 233457899999


Q ss_pred             cC-CCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        170 VS-AAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       170 ~~-~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +. .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       153 v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          153 LNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99 899999999999999998888888876

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.94  E-value=3.6e-25  Score=166.22  Aligned_cols=175  Identities=23%  Similarity=0.367  Sum_probs=130.9

Q ss_pred             cccccCCeEEEEEEee-----CCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE-eCCCc
Q psy11132         19 RTLNVGERASLICSIT-----KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR-NMVAE   92 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~   92 (243)
                      ..+.+|+.+.|.|.+.     .+.|.+.+.|++++..+....... .   .....|.|.+++.+|+|.|+|.+. +..+.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~  188 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-S---GVKDRLIVMNVAEKHRGNYTCHASYTYLGK  188 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-E---EETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-e---ecCceEEEEeceehhCcEEEEEEEcCCCCc
Confidence            4678899999999972     478888999999999886533211 1   125689999999999999999999 67776


Q ss_pred             c---eeEEEEEEE-----cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee----c-
Q psy11132         93 D---TQVQRLIVN-----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----D-  159 (243)
Q Consensus        93 ~---~~~~~l~v~-----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~----~-  159 (243)
                      .   ...+.+.+.     .+|.+.........+..|+.+.|.|.+ .|.|.+.+.|+++|..+...........    . 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~  267 (315)
T 1itb_B          189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP  267 (315)
T ss_dssp             EEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEEETTEECCTTCSSEEEEEEEECCS
T ss_pred             EEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEEECCEECCcccccccccceeeecc
Confidence            4   344445444     233333222111357899999999999 5899999999999999886543221110    0 


Q ss_pred             ------cceeEEEEeecCCCC-CeeEEEEEEccCcceeeeEEEEEE
Q psy11132        160 ------SFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       160 ------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                            ...+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus       268 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             SCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence                  124589999999999 999999999999999988888775

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=1.7e-26  Score=176.85  Aligned_cols=196  Identities=13%  Similarity=0.132  Sum_probs=142.2

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecC--------------CCceEEEEe--eeeceEEEEeecCCCCCeeE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN--------------SAALSITHV--DQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      +.+.+|+.+.|.|.+. +.|.+.+.|++++..+..              ..++.+...  ......|.|.+++.+|+|.|
T Consensus         4 v~~~~G~~v~L~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            4 VLGKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEETTSCEEECCCCT-TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCeEEEEEEec-CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            5688999999999985 788889999999854211              111111100  11256799999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      +|.+.+..    ..+.|.|...   ..  .+...+.+|+.+.|.|.+ .+.|.+.+.|++++..+.           ...
T Consensus        83 ~C~~~n~~----~~~~l~V~~~---~~--~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~-----------~~~  141 (363)
T 1wio_A           83 ICEVEDQK----EEVQLLVFGL---TA--NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNI-----------QGG  141 (363)
T ss_dssp             EEEETTEE----EEEEEEEEEE---EE--SSCSSEESBSCEEEEEEC-CTTCCCCEEEECSSSCEE-----------EES
T ss_pred             EEEEEECC----CcEEEEEEeC---CC--CCceEEecCCCEEEEEEc-CCCCCCeEEEEcCCCccc-----------ccc
Confidence            99998763    2455666541   11  111456789999999999 578999999999875431           124


Q ss_pred             eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCccc-------ccccceEEeCC
Q psy11132        163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYS-------FEQDSWMIDNE  235 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~W~~~~~  235 (243)
                      ..|.|.++..+|+|.|+|.|.|..+.....+.+.|...+. .+....+..++.+.+.|....       .+.+.|+++|.
T Consensus       142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~  220 (363)
T 1wio_A          142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA  220 (363)
T ss_dssp             SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC-SEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred             eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC-CCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence            6799999999999999999999877777777777773222 223455667889999996644       45899999986


Q ss_pred             ee
Q psy11132        236 NY  237 (243)
Q Consensus       236 ~~  237 (243)
                      .+
T Consensus       221 ~~  222 (363)
T 1wio_A          221 SS  222 (363)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.94  E-value=5.4e-26  Score=175.07  Aligned_cols=175  Identities=26%  Similarity=0.436  Sum_probs=142.5

Q ss_pred             CCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+... +....+.+|+.+.|.|.+. +.|.+.+.|++++..+....       ......|.|.+++.+|+|.|+|.+.
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~  277 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNVDFEDEGTYECEAE  277 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEE-EESCCEEEEEECCSCCSCCC-------SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEEc-cCCCCEEEEEECCcccccEE-------ecCCcEEEEccCChhhCEEEEEEEE
Confidence            4544433 4567789999999999995 77888999999887654311       1225789999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEE
Q psy11132         88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i  167 (243)
                      |..+.....+.|.|..+|.+...... ..+..|+.+.|.|.+ .|.|.+.+.|+++|..+.........     .+.|.|
T Consensus       278 n~~g~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~-----~~~L~i  350 (382)
T 1cs6_A          278 NIKGRDTYQGRIIIHAQPDWLDVITD-TEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQNRIEVS-----GGELRF  350 (382)
T ss_dssp             ETTEEEEEEEEEEEEEEEEEEECCCC-EEEETTCCEEEECEE-EEESCCEEEEEETTEECCCCSSEEEE-----TTEEEE
T ss_pred             cCCCeEEEEEEEEEecCCCcccCCCc-cEEcCCCeEEEEEEe-eeecCCEEEEEECCEECCCCceEEEE-----CCEEEE
Confidence            99988888888999887766543332 456789999999999 68999999999999998876544332     357999


Q ss_pred             eecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       168 ~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       351 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          351 SKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9999999999999999999999999988876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.94  E-value=4e-26  Score=171.33  Aligned_cols=215  Identities=17%  Similarity=0.193  Sum_probs=144.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCc-----eeEEEECCeee-------------cCCCceEEEEe----eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPL-----TIKWLKDGRYL-------------DNSAALSITHV----DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~-----~v~W~~~~~~~-------------~~~~~~~~~~~----~~~~~~l~i~~   73 (243)
                      |..+.+..|++++|.|.+. +.+.+     .+.|+|++...             ....+..+...    ...+.+|.|.+
T Consensus         7 P~~v~~~~G~~v~L~C~v~-~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            7 PTQVPGFLGDSVTLPCYLQ-VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CSEECCBTTSCEEECCEEE-CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCEEEEecCCCEEEEEEEE-CCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            4456688899999999996 43332     48999987532             11222222111    11246799999


Q ss_pred             cCCCCCeeEEEEEEe-CCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC
Q psy11132         74 VSARHSGNYSCTVRN-MVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  152 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~  152 (243)
                      ++.+|+|.|+|.+.+ ..+..+..+.|.+..+|........ ..+..|+...+.|.+..+.|.+.+.|++++..+.....
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~-~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~  164 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK-VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ  164 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECC-BCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEE
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccc-eEeecCceEEEEEEccCccCCcEEEeecCCccccccce
Confidence            999999999998864 3445666777777777765544333 45667888899998877889999999999876643221


Q ss_pred             eeEEeecc--ceeEEEEeecCCCCCeeEEEEEEccCcceeee--EEEEEEeecCCCCCeee--------eeccceeeecc
Q psy11132        153 VNVSDLDS--FSSLLSINSVSAAHSGEYTCVASNTAAQARYS--SKLQVKGNLNRLPPSYT--------LVFSQASYMST  220 (243)
Q Consensus       153 ~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~--~~l~v~~~~~~~~p~~~--------~~~~~~~~~~~  220 (243)
                      ........  ..+.|.|.....+|+|.|+|.|.|..+.....  +.|.|.     .||.+.        ...++.+.+.|
T Consensus       165 ~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-----~~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          165 VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-----YPPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC-----EEEEEEEECCCSCEETTCCCEEEEE
T ss_pred             eeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc-----cCCccccccccceeecCCCeEEEEE
Confidence            11111111  13568888888999999999999987655443  444444     344432        33456678899


Q ss_pred             Cccccc---ccceEEeCCee
Q psy11132        221 SYYSFE---QDSWMIDNENY  237 (243)
Q Consensus       221 ~~~~~~---~~~W~~~~~~~  237 (243)
                      ...+.|   .++|+++|+.+
T Consensus       240 ~~~g~P~p~~v~W~~~~~~l  259 (313)
T 4fqp_A          240 DARSNPEPTGYNWSTTMGPL  259 (313)
T ss_dssp             EEEEESCCCEEEEEETTBSC
T ss_pred             EecCCCCCcEEEEEECCEEC
Confidence            877654   58999998754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.94  E-value=6.1e-26  Score=161.09  Aligned_cols=176  Identities=15%  Similarity=0.141  Sum_probs=122.2

Q ss_pred             CCCcccccC--CeEEEEEEeeCCCCCceeEEEEC---CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         16 NPERTLNVG--ERASLICSITKGDIPLTIKWLKD---GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        16 ~~~~~~~~g--~~~~l~C~~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      +..+.+.+|  +++.|.|.+. + |.+.+.|+++   +..+....+....    ....|.|.+++.+|+|.|+|.+.+..
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~-~-p~~~v~w~~~~~~g~~~~~~~~~~~~----~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISWD----SKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBS-S-TTCCEEEEEETTTEEECCCSSSCEEE----TTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             ceEEEEecCCCccEEEeeccC-C-CCcEEEEEhhcCCCccccCCCccccc----CCccEEEccCChhcCceEEEEEEECC
Confidence            356788999  9999999984 4 6679999884   5555544333221    14579999999999999999998754


Q ss_pred             Cc-ceeEEEEEEEcC--CCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCC-eeEEe--e----
Q psy11132         91 AE-DTQVQRLIVNVP--PKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFP-VNVSD--L----  158 (243)
Q Consensus        91 ~~-~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~-~~~~~--~----  158 (243)
                      +. .+..+.|.|...  |.+...+.....+.+|+++.|.|.+. |.|  ++.+.|++++..+..... .....  .    
T Consensus        88 ~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~  166 (213)
T 2x1w_L           88 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM  166 (213)
T ss_dssp             -CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEE-ECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSC
T ss_pred             eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEE-CCCCCceEEEEEecCCccceEEEeccccccccCccc
Confidence            43 233366666442  22222222222578999999999995 543  468999998886543211 00000  0    


Q ss_pred             ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        159 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       159 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       167 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          167 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             EEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence            1224679999999999999999999999999999999998

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.94  E-value=4.1e-25  Score=153.29  Aligned_cols=159  Identities=19%  Similarity=0.255  Sum_probs=119.3

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +..+|.+...+.. .+.+|++++|.|.+. + +.+.+.|+|++...           ......|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~-~-~~~~~~W~k~g~~~-----------~~~~~~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGP-P-GVDLYRLEKLSSSR-----------YQDQAVLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECS-T-TCSEEEEEETTTCC-----------EESSSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCC-C-CCCEEEEEECCccc-----------cCcccEEEECcCChhhCceEEEE
Confidence            3467777766654 789999999999984 5 66799999998651           11257899999999999999999


Q ss_pred             EEeCCCc--ceeEEEEEEEcC---CCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         86 VRNMVAE--DTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        86 ~~~~~~~--~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      +.+..+.  .+..+.|.|...   |.+...  +...+.+|+.+.|.|.+ .+. ++.+.|++++..+......     ..
T Consensus        71 a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~--p~~~v~~G~~v~l~C~~-~~~-~~~~~w~k~g~~~~~~~~~-----~~  141 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVATGVFAKPSLSAQ--PGPAVSSGGDVTLQCQT-RYG-FDQFALYKEGDPAPYKNPE-----RW  141 (184)
T ss_dssp             EEETTEEBCCCCCEEEEEESSSCCCEEEEE--CCCSSCCTTCEEEEEEC-SSC-CCEEEEEECCCCTTSCCCC-----EE
T ss_pred             EEcCCCccCCCCCEEEEecCcCCCCEEEeC--CCceecCCCcEEEEEEc-CCC-CcEEEEEECCCcCcceecC-----CC
Confidence            9997652  345677777543   222222  23567899999999997 454 4699999999877653211     11


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       142 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          142 YRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            246688999999999999999999764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=9.1e-26  Score=176.80  Aligned_cols=225  Identities=16%  Similarity=0.206  Sum_probs=146.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEe--e----eeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHV--D----QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+...+......+|+.+.|.|.+.++.|.+ .+.|+++|..+...........  .    ...+.|.|.+++.+|+|.
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  195 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  195 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCe
Confidence            66666544444456788999999997546766 9999999998865411111000  0    113579999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcC-CCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC--------
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS--------  148 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~--------  148 (243)
                      |+|.+.|..+.....  +.+... +.+.........+.+|+.+.|.|.+ .|.|  .+.+.|+++  +..+.        
T Consensus       196 Y~C~a~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~  272 (438)
T 1qgc_4          196 YTCEATHKTSTSPIV--KSFNRNECEVMLVESGGGLVKPGGSLKLSCTA-SGFIFNRCAMSWVRQTPEKRLEWVATISSG  272 (438)
T ss_dssp             EEEEEEETTCSSCEE--EEEETTC-CCEEEEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTT
T ss_pred             EEEEEEecccCCcee--cccccccceeEEecCCceEEecCCcEEEEEEE-cccccCCcEEEEEECCCCCCcEEEEEEeec
Confidence            999999987764333  333321 1121122223457899999999999 5777  679999986  43221        


Q ss_pred             ---------CCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccCc-----ceeeeEEEEEEeecCCCCCeee----
Q psy11132        149 ---------PRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAA-----QARYSSKLQVKGNLNRLPPSYT----  209 (243)
Q Consensus       149 ---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-----~~~~~~~l~v~~~~~~~~p~~~----  209 (243)
                               ...+...... ......|.|.+++.+|+|.|+|.|.|..+     .......+.|..... .+|.+.    
T Consensus       273 ~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~  351 (438)
T 1qgc_4          273 GTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKT-TPPSVYPLAP  351 (438)
T ss_dssp             SCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCC-BCCEEEEECC
T ss_pred             CCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCC-CCCeEEEcCc
Confidence                     0112222221 22356899999999999999999999544     222345666653221 234332    


Q ss_pred             ---eeccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        210 ---LVFSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       210 ---~~~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                         +..++.+.+.|....+ |   .+.|+++|..+
T Consensus       352 ~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~  386 (438)
T 1qgc_4          352 GSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSS  386 (438)
T ss_dssp             CGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCS
T ss_pred             ccccccCCcEEEEEEeccccCCCcEEEEecCCCCC
Confidence               2347788999988654 3   89999998764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=6.4e-26  Score=178.32  Aligned_cols=205  Identities=17%  Similarity=0.158  Sum_probs=150.0

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCcee-----EEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTI-----KWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ...+....+.+|+++.|.|.+. + |.+.+     .|+|++..+... +         ...|.|.+++. |.| |+|.+.
T Consensus         3 ~~~P~~~~v~~G~~v~L~C~~~-g-p~p~~~~~~~~w~k~~~~~~~~-~---------~~~l~i~~v~~-d~g-Y~C~a~   68 (450)
T 1z7z_I            3 SVSPSKVILPRGGSVLVTCSTS-C-DQPMLLGIETPLPKKELLLPGN-N---------RKVYELSNVQE-DSQ-PMCYSN   68 (450)
T ss_dssp             EEESSEEEEETTEEEEEEEECC-S-SCCCEEEECSSSCEEECCSSTT-T---------EEEEEEEEECS-CBC-CEEEEE
T ss_pred             ccCCCceEEecCCcEEEEEEcc-C-CCcccccccceeeecceEecCC-C---------ceEEEEEeccc-CCe-eEEEEe
Confidence            3445677899999999999995 5 66677     899987654321 1         34788999987 999 999998


Q ss_pred             eCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC---EEEEEeCCEecCCCCCeeEEeeccceeE
Q psy11132         88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL---TIRWLKDGKPLSPRFPVNVSDLDSFSSL  164 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~  164 (243)
                      +..+..+..+.|.|..+|.+.........+.+|+.+.|.|.+ .+.|++   .+.|++++..+......    .......
T Consensus        69 ~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~~~----~~~~~~~  143 (450)
T 1z7z_I           69 CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREPAV----GEPAEVT  143 (450)
T ss_dssp             ETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEECC----TTTEEEE
T ss_pred             CCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeeccccc----ccccceE
Confidence            766667777888888887766444333567899999999999 477776   99999999877533211    1222468


Q ss_pred             EEEeecCCCCCeeEEEEEEccCccee--------eeEEEEEEeecCCCCCee----eeeccceeeeccCcccc-----cc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAAQAR--------YSSKLQVKGNLNRLPPSY----TLVFSQASYMSTSYYSF-----EQ  227 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g~~~--------~~~~l~v~~~~~~~~p~~----~~~~~~~~~~~~~~~~~-----~~  227 (243)
                      |.|..+..+|+|.|+|.|.|..|...        ....+.|... +..+|.+    .+..++.+.+.|.....     +.
T Consensus       144 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~-~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~  222 (450)
T 1z7z_I          144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL-PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ  222 (450)
T ss_dssp             EEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC-CSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCE
T ss_pred             EEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc-CCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceE
Confidence            99999999999999999999977533        2334444422 1244543    56678899999987654     48


Q ss_pred             cceEEeCCee
Q psy11132        228 DSWMIDNENY  237 (243)
Q Consensus       228 ~~W~~~~~~~  237 (243)
                      +.|+++|+.+
T Consensus       223 ~~W~~~~~~~  232 (450)
T 1z7z_I          223 VHLALGDQRL  232 (450)
T ss_dssp             EEEEETTEEC
T ss_pred             EEEeCCCEeC
Confidence            9999998654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=5.1e-26  Score=159.88  Aligned_cols=181  Identities=24%  Similarity=0.308  Sum_probs=131.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEE-eeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICS-ITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      |+.....+....+.+|+.+.|.|. + .+.|. +.+.|++++..+......... .......|.|.+++.+|+|.|+|.+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~p~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPP-YHFPDDLSYRWLLNEFPVFITMDKRRF-VSQTNGNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCC-SEESSCCEEEEEESSTTCBCCCSSSEE-ECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEecccc-ccCCCceEEEEEECCceeeeeeCCCeE-EEcCCCeEEECcCCcccCeEEEEEE
Confidence            444444467788999999999999 6 46677 899999999776422111111 1112567999999999999999999


Q ss_pred             EeCCCcce---eEEEEEEEc-------CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         87 RNMVAEDT---QVQRLIVNV-------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        87 ~~~~~~~~---~~~~l~v~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      .+..+...   ..+.+.+..       +|.+..... ...+..|+.+.|.|.+ .+.|.+.+.|++++..+.......  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~--  161 (201)
T 3s97_C           86 SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK-DVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPSTAEIS--  161 (201)
T ss_dssp             EEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECC-CEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCTTCEEE--
T ss_pred             EecCCCcchhhcccceeeccccccCCCCCceEecCC-ceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCCceeec--
Confidence            98665432   233333332       122222221 2456789999999999 588999999999999776542211  


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                         .....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       162 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          162 ---TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ---TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence               124689999999999999999999999999888888876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.93  E-value=9.4e-26  Score=160.45  Aligned_cols=184  Identities=16%  Similarity=0.106  Sum_probs=127.6

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeece--EEEEeecCCCCCeeEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS--MLVIDSVSARHSGNYS   83 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~   83 (243)
                      +..+|.+...+. ..+.+|++++|.|.+. + +.+.+.|+|+|..+...... .. ......  .|.|.+++.+|+|.|+
T Consensus         6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~-~-~~~~~~W~k~g~~~~~~~~~-~~-~~~~~~~~~L~I~~v~~~D~G~Y~   80 (218)
T 1uct_A            6 DFPMPFISAKSS-PVIPLDGSVKIQCQAI-R-EAYLTQLMIIKNSTYREIGR-RL-KFWNETDPEFVIDHMDANKAGRYQ   80 (218)
T ss_dssp             GSCCCCEEESSC-SEEETTCCEEEEECCC-T-TCSEEEEEEEETTEEEECSE-EC-C----CCCEEEECSCCGGGCEEEE
T ss_pred             CCCCCEEEecCC-CccCCCCCEEEEEEcC-C-CCCEEEEEECCCcccccccc-cC-CCCcceeeEEEEcccccccCEEEE
Confidence            345778877665 4689999999999984 4 56799999998765432111 00 011134  8999999999999999


Q ss_pred             EEEEeCCCc--ceeEEEEEEEcCCC-ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         84 CTVRNMVAE--DTQVQRLIVNVPPK-IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        84 C~~~~~~~~--~~~~~~l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      |.+.+..+.  .+..+.|.|...+. ......+...+.+|++++|.|.. .+.|.+.+.|+|+|..+...  .   ....
T Consensus        81 C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~~--~---~~~~  154 (218)
T 1uct_A           81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ--H---QSGE  154 (218)
T ss_dssp             EEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS--E---EECS
T ss_pred             EEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeC-CCCCCCEEEEEECCCccccc--c---cCCC
Confidence            999997652  34567777765221 11111222467899999999976 46778899999999877642  1   1223


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCc-----ceeeeEEEEEEee
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAA-----QARYSSKLQVKGN  200 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g-----~~~~~~~l~v~~~  200 (243)
                      ....|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|.+.
T Consensus       155 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          155 HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            357899999999999999999998642     2334577777743

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=5.1e-26  Score=172.17  Aligned_cols=178  Identities=26%  Similarity=0.379  Sum_probs=134.8

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+....+............|.|.+++.+|+|.|+|.+.|..+.....+.
T Consensus       133 ~~v~~g~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  211 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT  211 (334)
T ss_dssp             EEEETTCCEEEECCCC-CSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEE
T ss_pred             EEecCCCcEEEEEEcc-CCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEE
Confidence            5678999999999984 778889999999988866543321122223568999999999999999999999888888888


Q ss_pred             EEEEcCCC----ccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe----CCEecCCCCCee--EEee------ccce
Q psy11132         99 LIVNVPPK----IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVN--VSDL------DSFS  162 (243)
Q Consensus        99 l~v~~~p~----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~~~--~~~~------~~~~  162 (243)
                      |.|...+.    +.........+..|+.+.|.|.+ .|.|.+.+.|++    +|..+.......  ....      +...
T Consensus       212 l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (334)
T 1ry7_B          212 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL  290 (334)
T ss_dssp             EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTC
T ss_pred             EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccc
Confidence            88876432    11111122456789999999999 689999999999    666655332211  1110      1123


Q ss_pred             eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       291 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             CCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred             cEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence            479999999999999999999999999999999988

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.93  E-value=2.2e-25  Score=159.65  Aligned_cols=177  Identities=16%  Similarity=0.204  Sum_probs=116.9

Q ss_pred             CcccccCCeEEEEEEeeCCCCC---ceeEEEECCeee-----------cC------CCceEEEE--eeeeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDIP---LTIKWLKDGRYL-----------DN------SAALSITH--VDQYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~-----------~~------~~~~~~~~--~~~~~~~l~i~~~~   75 (243)
                      .+.+.+|++++|.|.+. +.+.   ..|.|+|++...           ..      ..+.....  ...+..+|.|.+++
T Consensus        13 pV~v~~G~~v~L~C~v~-~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           13 PILAMVGEDADLPCHLF-PTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             CEEEETTSCEEEEEEEE-SCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CEEEEcCCcEEEEEEEE-CCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            46688999999999986 3332   379999876421           11      11111111  11235689999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEe-cCCCCCee
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSPRFPVN  154 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~~~~~  154 (243)
                      .+|+|.|+|.+.|..+.....+.+.+..++......   ..+..|+.+.|.|.+..+.|.|.++|++++.. +.......
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~---~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD---VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEE---EEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccce---eeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            999999999999987776665555554433322211   34567999999999965579999999986544 33332222


Q ss_pred             EEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ....++....+.+..++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            22223323445566778899999999999999999988888876

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=1.4e-25  Score=170.81  Aligned_cols=192  Identities=18%  Similarity=0.205  Sum_probs=111.4

Q ss_pred             eeEEEecCCCccCC----CCCcccccCCeEEEEEEee----CCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEee
Q psy11132          2 LVIFSTVPPKLSPT----NPERTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS   73 (243)
Q Consensus         2 ~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~C~~~----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   73 (243)
                      +.|.|..+|.....    +....+.+|+.+.|.|.+.    .+.|.+.+.|++++..+.....+..     ....|.|.+
T Consensus       109 ~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~-----~~~~L~i~~  183 (349)
T 4dep_C          109 FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP-----EGMNLSFLI  183 (349)
T ss_dssp             EEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEE-----ETTEEEEES
T ss_pred             EEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceee-----cCCEEEEee
Confidence            34666666554322    3345678999999999741    2578889999999998865433321     146799999


Q ss_pred             cCCCCCeeEEEEEEeCC-Ccc---eeEEEEEEEcC------CCccccccCC-CCCCCCCcEEEEEEeec---CCCCCEEE
Q psy11132         74 VSARHSGNYSCTVRNMV-AED---TQVQRLIVNVP------PKIESFAFPF-DGLPEGARTRVICGVTH---GDPPLTIR  139 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~v~~~------p~~~~~~~~~-~~~~~g~~~~l~C~~~~---~~p~~~~~  139 (243)
                      ++.+|+|.|+|.+.|.. +..   +..+.|.|..+      |.+....... ..+..|+.+.|.|.+..   +.|.+.+.
T Consensus       184 v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~  263 (349)
T 4dep_C          184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW  263 (349)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEE
T ss_pred             eeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEE
Confidence            99999999999999976 443   56677777653      3332221111 16778999999999953   46889999


Q ss_pred             EEeCCEecCC-CCCeeEE--------eeccceeEEEEeecCCCCC-eeEEEEEEccCcceeeeEEEEEE
Q psy11132        140 WLKDGKPLSP-RFPVNVS--------DLDSFSSLLSINSVSAAHS-GEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       140 W~~~~~~~~~-~~~~~~~--------~~~~~~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |++++..+.. .......        ......+.|.|.++..+|. |.|+|.|.|..|.....+.|.|.
T Consensus       264 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          264 WTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             EESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             EEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            9999988765 1111110        0011235599999999999 99999999999999988888886

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.93  E-value=1.4e-24  Score=164.07  Aligned_cols=184  Identities=19%  Similarity=0.224  Sum_probs=133.9

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      ..||.+........+.+|+.+.|.|.+. +.| .+.+.|++++..+... .++...     ...|.|.+++.+|+|.|+|
T Consensus       126 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~-g~p~~~~i~W~k~~~~l~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C  199 (329)
T 3oq3_B          126 RKPPSCIPETYELGTHDKYGIDLYCGIL-YAKHYNNITWYKNNQELIIDGTKYSQS-----GQNLIIHNPELEDSGRYDC  199 (329)
T ss_dssp             CCCCSCEEEEEETTSSTTTCEEEECCCC-SCCCCCEEEEEETTEECCCSSSSEEEE-----TTEEEECSCCGGGCEEEEE
T ss_pred             cCCCcEeccccceEEeCCCcEEEEeccC-CCCCCceEEEEECCccCCCCCceEecC-----CCEEEEeecChhhCEEEEE
Confidence            3456554444445577899999999985 777 7899999999988532 232221     5789999999999999999


Q ss_pred             EEEeC--CCcce----eEEEEEEEcCCCc--cccccCCCCCCCCCcEEEEEEeecCCC---CC-EEEEEeCCEecCC-CC
Q psy11132         85 TVRNM--VAEDT----QVQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHGDP---PL-TIRWLKDGKPLSP-RF  151 (243)
Q Consensus        85 ~~~~~--~~~~~----~~~~l~v~~~p~~--~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~-~~~W~~~~~~~~~-~~  151 (243)
                      .+.|.  .+...    ..+.|.|..+|..  +........+..|+.+.|.|.+. +.|   ++ .+.|++++..+.. ..
T Consensus       200 ~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~~~i~v~W~~~g~~i~~~~~  278 (329)
T 3oq3_B          200 YVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAV-STSLLVDDVLIDWENPSGWIIGLDF  278 (329)
T ss_dssp             EEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEE-ETTCCTTCCEEEEECTTSCBCCBCS
T ss_pred             EEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEE-ECCCCCCCcEEEEEECCeeeeccCC
Confidence            99987  55433    3377888776632  11122225678899999999995 665   66 8999999987532 22


Q ss_pred             CeeEE---eeccceeEEEEeecCCCCCe-eEEEEEEccCcceeeeEEEEE
Q psy11132        152 PVNVS---DLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       152 ~~~~~---~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      .....   ......+.|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus       279 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             SEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             ceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            21111   11113578999999999999 999999999999988887766

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.93  E-value=1.5e-25  Score=170.39  Aligned_cols=219  Identities=16%  Similarity=0.220  Sum_probs=139.0

Q ss_pred             CCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceeec-----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYLD-----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+.+.. +.+.+.|+|+  +..+.                 ...++.+.... ....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR   87 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence            345688999999999996432 3568999986  33221                 12344433221 234689999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCC
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPR  150 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  150 (243)
                      .+|+|.|+|.+.+..+.......|.|..    +|.+..... ...+..|+.+.|.|.+.++.|. +.+.|++++..+...
T Consensus        88 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  166 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH  166 (344)
T ss_dssp             GGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC-SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEE
T ss_pred             cccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc-cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCcee
Confidence            9999999999988544444456777763    232222222 2456789999999999644464 799999998764211


Q ss_pred             CCeeEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe-------------------ecCCCCCee
Q psy11132        151 FPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG-------------------NLNRLPPSY  208 (243)
Q Consensus       151 ~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~-------------------~~~~~~p~~  208 (243)
                      ........+   ...+.|.|..+..+| |.|+|.|.|..+.......+.+..                   .....+|.+
T Consensus       167 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v  245 (344)
T 1za6_B          167 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQV  245 (344)
T ss_dssp             ECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEE
T ss_pred             ECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEE
Confidence            000000011   113578898888777 999999999988643332222100                   012245665


Q ss_pred             eee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        209 TLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       209 ~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .+.       .+..+.+.|...++ |   .+.|++||+.+
T Consensus       246 ~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~  285 (344)
T 1za6_B          246 YTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  285 (344)
T ss_dssp             EEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCC
T ss_pred             EEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeEC
Confidence            433       24457889988764 2   68999999765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.93  E-value=3.2e-25  Score=157.37  Aligned_cols=181  Identities=15%  Similarity=0.263  Sum_probs=125.7

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEEeeeeceEEEEeecC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      |.+...+ ...+.+|++++|.|.+. +.+.+.+.|+|.  +....            ...++.... ......|.|.+++
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~   78 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGD-KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SGNMATLTISKAQ   78 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECS-STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCC
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcC-CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cCCEEEEEECCCC
Confidence            4445555 67899999999999995 778889999982  22111            123444333 3336789999999


Q ss_pred             CCCCeeEEEEEEeCCC---cceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEec
Q psy11132         76 ARHSGNYSCTVRNMVA---EDTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL  147 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~  147 (243)
                      .+|+|.|+|.+.+..+   .......|.|.    .+|.+...+.. ..+..|+.+.|.|.+.+..|+ +.+.|+++|..+
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L           79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPS-SEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             hhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCC-cccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            9999999999999877   34556778887    44444433222 233479999999999643444 599999999988


Q ss_pred             CCCCCeeE-Eeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        148 SPRFPVNV-SDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       148 ~~~~~~~~-~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ........ ...+   ...+.|.|..+..+|+|.|+|.|.|..+....++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          158 TQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             CCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            75321110 0011   11356899999999999999999999876665543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.93  E-value=1.7e-25  Score=169.08  Aligned_cols=190  Identities=15%  Similarity=0.203  Sum_probs=142.6

Q ss_pred             eeEEEecCCCccC--CCCCcccccC---CeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE-EeeeeceEEEEeecC
Q psy11132          2 LVIFSTVPPKLSP--TNPERTLNVG---ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVS   75 (243)
Q Consensus         2 ~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~   75 (243)
                      +.|.|..+|.+..  .+....+.+|   +.+.|.|.+..+.|.+.+.|++++............ ..-.....|.|..++
T Consensus       123 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  202 (331)
T 3u83_A          123 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSR  202 (331)
T ss_dssp             EEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCG
T ss_pred             EEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEecc
Confidence            4577788887643  3556678888   789999984358888899999963221110000000 000113568899999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCee
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~  154 (243)
                      .+|.|.|+|.+.+..+..+..+.|.|..+|.+.........+..|+.+.|.|.+ .+.|.+. +.|++++..+.....  
T Consensus       203 ~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~~~--  279 (331)
T 3u83_A          203 EAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA-DANPPATEYHWTTLNGSLPKGVE--  279 (331)
T ss_dssp             GGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTEE--
T ss_pred             ccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeC-cCCCCCCEEEEEECCCcccccce--
Confidence            999999999999998888888888888888766554444567889999999999 5888887 999999988765421  


Q ss_pred             EEeeccceeEEEEe-ecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        155 VSDLDSFSSLLSIN-SVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       155 ~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      .     ....|.|. ++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       280 ~-----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          280 A-----QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             E-----ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             e-----cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence            1     13679999 8999999999999999999998888888874

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=167.84  Aligned_cols=182  Identities=11%  Similarity=0.140  Sum_probs=133.6

Q ss_pred             CCCccCCCC-CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNP-ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +|.+...+. ...+.+|+.+.|.|.+..+.|.+.+.|++++..+....++.+.... .....|.|.+++.+|+|.|+|.+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  185 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL  185 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence            555554433 6778999999999999547888899999999999887666554432 33467999999999999999999


Q ss_pred             EeCCCcceeEEEEEEE---------------------cCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCC
Q psy11132         87 RNMVAEDTQVQRLIVN---------------------VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDG  144 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~  144 (243)
                      .+.....  ...+.+.                     .+|.+... .. ..+..|+.+.|.|.+ .+.|.+ .+.|++++
T Consensus       186 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~g  260 (312)
T 2y23_A          186 QDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LS-WEVTGECNVLLKCKV-ANIKKETHIVWYKDE  260 (312)
T ss_dssp             ESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-EE-EEEETTTEEEEEEEE-ESCCSSCEEEEEETT
T ss_pred             EeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeec-ce-EEEeCCCEEEEEEEE-cCCCCCCEEEEeeCC
Confidence            7644333  2333331                     11221111 11 356789999999999 588877 99999999


Q ss_pred             EecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        145 KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..+.........   .....|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       261 ~~~~~~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          261 REISVDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EEEEEECCC-------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EECCCCCcEEEE---CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            988744333322   224789999999999999999999999999888887653

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.93  E-value=1.3e-24  Score=152.84  Aligned_cols=173  Identities=14%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             EEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          5 FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         5 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .+..+|.+...+. ..+.+|++++|.|.+.  .+.+.+.|+|+|..+.................|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            4 GVHRKPSLLAHPG-PLVKSEETVILQCWSD--VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             ---CCCEEEEESC-SEEETTCCEEEEEEES--SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CcCCCCeEEEEcC-CccCCCCcEEEEEecc--CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEE
Confidence            4456777776665 6688999999999984  356699999998765432111101111235789999999999999999


Q ss_pred             EEEeCC-----CcceeEEEEEEEcC---CCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         85 TVRNMV-----AEDTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        85 ~~~~~~-----~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      .+.+..     ...+..+.|.|...   |.+...  +...+.+|++++|.|.+ .+ +.+.+.|+|+|..+.........
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~--p~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~  156 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ--PGPTVLAGENVTLSCSS-RS-SYDMYHLSREGEAHERRLPAGPK  156 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEE--SCSEECTTCEEEEEEEE-SS-CCSEEEEEETTCSSCEEEECEEE
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCCCCceecC--CCCccCCCCeEEEEEeC-CC-CCceEEEEECCcccCcccccccc
Confidence            998642     12355677888754   222221  22457899999999998 45 56899999999876532111111


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ........|.|.+++  |+|.|+|.|.+..
T Consensus       157 ~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          157 VNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             ETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             cCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            111225779999998  9999999998753

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=2.9e-24  Score=174.14  Aligned_cols=196  Identities=16%  Similarity=0.179  Sum_probs=144.8

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCcee----EEEE--CCe--eecC---------CCceEEEEe-e
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTI----KWLK--DGR--YLDN---------SAALSITHV-D   63 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v----~W~~--~~~--~~~~---------~~~~~~~~~-~   63 (243)
                      +.|.|..+|.+...+....+.+|+.+.|.|.+. +.|.+.+    +|++  +|.  .+..         ..++.+... .
T Consensus       324 ~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~-~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~  402 (585)
T 2ocw_A          324 WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYN-RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG  402 (585)
T ss_pred             EEEEEecccccccCCcceEEEeCCcEEEEEecC-CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCC
Confidence            457888899888888888899999999999994 7777666    7999  886  4432         223332211 1


Q ss_pred             eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeec---CCCCCEEEE
Q psy11132         64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH---GDPPLTIRW  140 (243)
Q Consensus        64 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~---~~p~~~~~W  140 (243)
                      .+..+|.|.+++.+|+|.|+|.+ |..+.....+.|.|...|.....+ ....+..|+.+.|.|.+..   +.|.+.+.|
T Consensus       403 ~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W  480 (585)
T 2ocw_A          403 NGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVP-GNVTAVLGETLKVPCHFPCKFSSYEKYWCKW  480 (585)
T ss_pred             CcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccC-CceeEecCCcEEEEEEecCCCCCCccEEEEE
Confidence            12345999999999999999999 888888888889988754443332 3356789999999999841   677889999


Q ss_pred             EeCCEecCCCCC------eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee-eEEEEEEee
Q psy11132        141 LKDGKPLSPRFP------VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVKGN  200 (243)
Q Consensus       141 ~~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~  200 (243)
                      +++|..+.....      ..........+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|...
T Consensus       481 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~  547 (585)
T 2ocw_A          481 NNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER  547 (585)
T ss_pred             eecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence            999987653321      111111233478999999999999999999999986654 488888843

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=176.30  Aligned_cols=210  Identities=9%  Similarity=0.093  Sum_probs=138.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|++++|.|.+. +.+...+.|++++..+.....+..  .+....+|.|.+++.+|+|.|+|.+.+..+....
T Consensus        55 ~~~~~v~~g~~~~L~c~~~-~~~~~~~~W~~~~~~l~~~~~~~~--~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~  131 (527)
T 3qs9_E           55 AAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQPHFDL--QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (527)
T ss_dssp             -CEEEECSSCCEEEEEECS-CCSSCEEEEEETTEEECCCCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             eeeEEEeccccEEEEEEEe-cCCceeEEEEecCCccCcccccCC--CcceEEEEEECcCChhhCeeEEEEEEeccccEEE
Confidence            3367899999999999994 777789999999988765444322  2222456999999999999999999988776665


Q ss_pred             EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCC
Q psy11132         96 VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus        96 ~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      .+.|.|.  |..............|+...|.|.+ .|.|.|.+.|++++..+......     ....-......+..+|+
T Consensus       132 ~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~  203 (527)
T 3qs9_E          132 LFTVSIR--NTLLYTLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEE-----SPAVVKKEEKVLHELFG  203 (527)
T ss_dssp             EEEEEEC-------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CEEECCSEECCCCS
T ss_pred             EEEEEEC--CceeeccCCCcEEecCCceEEEEEE-ceecCCeEEEEECCCCCcccccc-----CCcEEEEeeeeccccCC
Confidence            5555554  3222111111123456777899999 69999999999988765421100     00011122233457899


Q ss_pred             eeEEEEEEccCcceeee-EEEEEEeecCCCCCeeeeeccceeeeccCcc-cc--cccceEEeCCe
Q psy11132        176 GEYTCVASNTAAQARYS-SKLQVKGNLNRLPPSYTLVFSQASYMSTSYY-SF--EQDSWMIDNEN  236 (243)
Q Consensus       176 g~y~C~~~n~~g~~~~~-~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~-~~--~~~~W~~~~~~  236 (243)
                      |.|+|.|.|..|..... +.+.|...+...|+...+..++.+.+.|... ..  +.++|+++|..
T Consensus       204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~  268 (527)
T 3qs9_E          204 TDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA  268 (527)
T ss_dssp             SCEEEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC
T ss_pred             EEEEEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE
Confidence            99999999999977554 6677664444445566778899999999874 43  48999999875

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=2.1e-24  Score=150.18  Aligned_cols=177  Identities=17%  Similarity=0.256  Sum_probs=123.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+.. .+.+|++++|.|.+. + +...+.|+|++..+......  .........|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   77 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGN-Y-GAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIYR   77 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-T-TCCEEEEEETTEEEEEECCS--SCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecC-C-CCCEEEEEECCCcccccccc--cCCCcceeEEEeCcCCcccCeEEEEEec
Confidence            45677766655 789999999999984 4 34689999999876421100  0011125789999999999999999998


Q ss_pred             eCCC--cceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccce
Q psy11132         88 NMVA--EDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  162 (243)
Q Consensus        88 ~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  162 (243)
                      +..+  ..+..+.|.|..   +|.+...  +...+.+|+.++|.|.+ .+ +++.+.|+++|..+...     .......
T Consensus        78 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~--p~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~-----~~~~~~~  148 (188)
T 1oll_A           78 VGELWSEPSNLLDLVVTEMYDTPTLSVH--PGPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHVQ-----RGYGKVQ  148 (188)
T ss_dssp             ETTEECCCCCCEEEEEESCSCCCEEEEE--SCSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCEEE-----EEECSSE
T ss_pred             CCCCCCCCCCceEEEecccCCCCeEEEC--CCCccccCCEEEEEEEc-CC-CCCEEEEEECCcccccc-----ccCCCce
Confidence            8644  235667777765   2333222  22456789999999997 34 45799999998765431     1122335


Q ss_pred             eEEEEeecCCCCCeeEEEEEEccCc---ceeeeEEEEEE
Q psy11132        163 SLLSINSVSAAHSGEYTCVASNTAA---QARYSSKLQVK  198 (243)
Q Consensus       163 ~~l~i~~~~~~d~g~y~C~~~n~~g---~~~~~~~l~v~  198 (243)
                      ..|.|.+++.+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       149 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          149 AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             eEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            7899999999999999999998752   22344566554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=158.19  Aligned_cols=181  Identities=18%  Similarity=0.232  Sum_probs=124.4

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCc---eeEEEECCeeecCCC------------------ceEEEE--eeeeceEEEEe
Q psy11132         16 NPERTLNVGERASLICSITKGDIPL---TIKWLKDGRYLDNSA------------------ALSITH--VDQYNSMLVID   72 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~---~v~W~~~~~~~~~~~------------------~~~~~~--~~~~~~~l~i~   72 (243)
                      ++.+.+.+|++++|.|.+. +.+.+   .|.|+|++..+....                  +.....  ......+|.|.
T Consensus         6 p~~vtv~~G~~v~L~C~v~-~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYR-GDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CSEEEEETTSCEEECCEEC-CCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCeEEEEcCCCEEEEEEEE-cCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4567789999999999995 55543   589999875432111                  111100  01123579999


Q ss_pred             ecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC
Q psy11132         73 SVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  151 (243)
                      +++.+|+|.|.|.+.+..+. ......+.+..++...........+..|..+.+.|.+ .+.|++.++|++++..+....
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESSCCEEEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeec-cCCcCceEEEEECCcccccCc
Confidence            99999999999999876654 3334445555444443333333456789999999999 589999999999987665432


Q ss_pred             CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        152 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       152 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ...........+.|.|..+..+|+|.|+|.|.|..|.....+++.|.
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            22111112224679999999999999999999999987776666654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.93  E-value=1.7e-25  Score=162.52  Aligned_cols=177  Identities=18%  Similarity=0.198  Sum_probs=120.3

Q ss_pred             CCcccccCCeEEEEEEeeC--CCCCceeEEEECCeeec------------------------------CCCceEEEEeee
Q psy11132         17 PERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLD------------------------------NSAALSITHVDQ   64 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~~~~~------------------------------~~~~~~~~~~~~   64 (243)
                      ..+.+.+|+++.|.|.+..  ..+.+.+.|++++....                              ...+..+..  .
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~   87 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN--L   87 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC--T
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc--C
Confidence            4566889999999999852  16677999999875321                              011111110  1


Q ss_pred             eceEEEEeecCCCCCeeEEEEEEeCCCcc-----eeEEEEEEEcCCC---ccccccCCCCCCCCCcEEEEEEeecCCCCC
Q psy11132         65 YNSMLVIDSVSARHSGNYSCTVRNMVAED-----TQVQRLIVNVPPK---IESFAFPFDGLPEGARTRVICGVTHGDPPL  136 (243)
Q Consensus        65 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~p~---~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  136 (243)
                      ....|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|..++.   +.........+.+|+.+.|.|.+ .+.|.+
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~g~p~p  166 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANA  166 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE-ESCTTC
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe-cCCCCC
Confidence            13579999999999999999999876643     4477788876522   22212222445679999999999 588888


Q ss_pred             EEEEEeCCEecCCCCCee--------------------EEeeccceeEEEEeecCCCCCeeEEEEEEccCc---ceeeeE
Q psy11132        137 TIRWLKDGKPLSPRFPVN--------------------VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA---QARYSS  193 (243)
Q Consensus       137 ~~~W~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g---~~~~~~  193 (243)
                      .+.|++++..+.......                    ..........|.|.++..+|+|.|+|.|.|..|   ....++
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            999999998775432110                    000000136899999999999999999999555   444444


Q ss_pred             EEE
Q psy11132        194 KLQ  196 (243)
Q Consensus       194 ~l~  196 (243)
                      .|.
T Consensus       247 ~l~  249 (250)
T 2fbo_J          247 ILK  249 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.93  E-value=2.2e-25  Score=153.39  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=115.2

Q ss_pred             CcccccCCeEEEEEEee-CCCCCceeEEEECCeeec----------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132         18 ERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLD----------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+.+.+|++++|.|... ...+.+.|.|+|++..+.          ...++.+.    .+++|.|.+++.+|+|.|+|.+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~----~~gsL~I~~v~~~D~G~Y~C~~   80 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL----ANGDLKIKNLTRDDSGTYNVTV   80 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC----TTSCEEESSCCGGGCEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC----CCCcEEEcccccccCEEEEEEE
Confidence            35578999999999432 225566999999997542          22333331    1445999999999999999999


Q ss_pred             EeCCCcc--eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeE
Q psy11132         87 RNMVAED--TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL  164 (243)
Q Consensus        87 ~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  164 (243)
                      .+..+..  ...+.|.|..++..+...      ..+..+.|.|.+ .|.|.+.+.|++++..+.....            
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~~~~p~i~------~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~~~------------  141 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEMVSKPMIY------WECSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQ------------  141 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECCCCCCEEE------EETTTTEEEEEC-SSCSSCEEEEEETTEEEEEESS------------
T ss_pred             EeCCCCEEEEEEEEEEEeCCCCCCEEE------ecCCcEEEEEEe-cCCCCcEEEEEECCEECCCCCc------------
Confidence            9988875  667788887654322211      124458999999 6888899999999987753321            


Q ss_pred             EEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.|..+..+|+|.|+|.|.|..|.......|.+
T Consensus       142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            345577899999999999999998877766543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.93  E-value=2.4e-24  Score=153.75  Aligned_cols=180  Identities=14%  Similarity=0.232  Sum_probs=121.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC-----CceeEEEECCeeec---------C------CCceEEEEe--eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI-----PLTIKWLKDGRYLD---------N------SAALSITHV--DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~~~~~~---------~------~~~~~~~~~--~~~~~~l~i~~   73 (243)
                      +..+.+.+|+++.|.|.+. +.|     .+.+.|++++..+.         .      ..+..+...  .....+|.|.+
T Consensus         8 ~~~v~~~~G~~v~L~C~~~-~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFP-VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             CSEEEEETTSCEEEEEECC-CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CccEEEEcCCcEEEEeEec-CCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            3455688999999999984 444     34899999763321         0      122222110  11246899999


Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecCCCCC
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFP  152 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~  152 (243)
                      ++.+|+|.|+|.+.+ .+.....+.|.|..++........ ..+..|+.+.|.|.+ .|.|.+.+.|+++ +..+.....
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~-~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRIL-VVDPVTSEHELTCQA-EGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEE-EEETTTTEEEEEEEE-EEBSCCEEEEEETTCCEECCEEE
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceee-eeecCCCcEEEEEEe-cCCCCCeEEEEECCCceecCccc
Confidence            999999999999998 555666788888876654432221 245689999999999 5799999999998 555543221


Q ss_pred             eeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        153 VNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       153 ~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      ..... ..+......+..+..+|.|.|+|.|.|..|.....+.+.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            11111 111112222334567899999999999999999999998873

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.93  E-value=6.8e-26  Score=168.34  Aligned_cols=213  Identities=21%  Similarity=0.271  Sum_probs=147.9

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+++.|.|.+. +.    +.|++++..     ..... .....+.|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~-~~----v~W~~~~~~-----~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~   70 (292)
T 4dkd_C            2 GSIPVIEPSVPELVVKPGATVTLRCVGN-GS----VEWDGPPSP-----HWTLY-SDGSSSILSTNNATFQNTGTYRCTE   70 (292)
T ss_dssp             --CCEEESCCSSCEECTTCCEEEEEECS-SC----CCBCCCCCS-----SCEEC-CBTTEEEEEESSCCGGGCSCEEECC
T ss_pred             CCCceecCCCCeEEEcCCCcEEEEEcCC-Cc----eEEccCCCC-----ceEEe-ccCceEEEEEcccccccCEEEEEEE
Confidence            3688888888888999999999999985 42    899976532     11111 1122468999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeC-CEecCCCCCeeEEeecccee
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKD-GKPLSPRFPVNVSDLDSFSS  163 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~-~~~~~~~~~~~~~~~~~~~~  163 (243)
                      .+..+..+..+.|.|..+|...........+.+|+.+.|.|.+. + |.  +.+.|+++ +..+..........    ..
T Consensus        71 ~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-~-~~~~~~v~W~~~~~~~~~~~~~~~~~~----~~  144 (292)
T 4dkd_C           71 PGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLT-D-PVLEAGVSLVRVRGRPLMRHTNYSFSP----WH  144 (292)
T ss_dssp             CC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEES-S-GGGGSSEEEEEGGGCCCCSSCCEECCS----SS
T ss_pred             ccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCC-C-CCcceeEEEEecCCCccccCCcccccC----Cc
Confidence            98877778888888888776533333335577899999999994 5 43  78999987 44444332222211    23


Q ss_pred             EEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEEeecCCCCCeeeee-------ccceeeeccCccccc---ccceEE
Q psy11132        164 LLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSFE---QDSWMI  232 (243)
Q Consensus       164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~~---~~~W~~  232 (243)
                      .|.|.++..+|+|.|+|.|.|..+... ..+.|.|..... .+|.+...       .+..+.+.|.....+   .+.|++
T Consensus       145 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~-~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~  223 (292)
T 4dkd_C          145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP-GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH  223 (292)
T ss_dssp             CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC-SSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCB
T ss_pred             eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC-CCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeC
Confidence            389999999999999999999877653 477888873221 26655443       456677788766543   577888


Q ss_pred             eCCee
Q psy11132        233 DNENY  237 (243)
Q Consensus       233 ~~~~~  237 (243)
                      ++..+
T Consensus       224 ~~~~~  228 (292)
T 4dkd_C          224 NNTKL  228 (292)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            87643

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=150.33  Aligned_cols=161  Identities=18%  Similarity=0.263  Sum_probs=113.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec---CC---------------CceEEEEeeeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD---NS---------------AALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---~~---------------~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +..+.+.+|++++|.|.+..+.+.+.+.|++++..+.   ..               .+..+.    .+.+|.|.+++.+
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~   80 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT----QSYSLQLSNLKME   80 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC----TTCCEEECSCCGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC----CCeEEEECCCCcc
Confidence            4567788999999999985334556999999976542   10               011111    2578999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCC-cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA-RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      |+|.|+|.+.+..+.....+.|.|..++..+...........|. .+.|.|.+..+.|.+.+.|++++..+..       
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------  153 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------  153 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------
Confidence            99999999998887666678888877654333222212233465 8999999953356899999999886532       


Q ss_pred             eeccceeEEEEeecCCC-CCeeEEEEEEccCcceeee
Q psy11132        157 DLDSFSSLLSINSVSAA-HSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~-d~g~y~C~~~n~~g~~~~~  192 (243)
                           ...|.|.....+ |+|.|+|.|.|..|..+..
T Consensus       154 -----~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          154 -----QPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             -----SSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             -----CCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                 134666544454 8999999999999987544

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.92  E-value=8.2e-25  Score=162.48  Aligned_cols=193  Identities=18%  Similarity=0.235  Sum_probs=137.5

Q ss_pred             eeEEEecCCCc-cCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132          2 LVIFSTVPPKL-SPTNPERTLNVGERASLICSITKGDI-PLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus         2 ~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +.|.|..+|.. ...+....+.+|+.+.|.|.+. +.+ .+.+.|+++ +..+....+.....    ...|.|.+++.+|
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d  155 (292)
T 4dkd_C           81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLT-DPVLEAGVSLVRVRGRPLMRHTNYSFSP----WHGFTIHRAKFIQ  155 (292)
T ss_dssp             ECCEECCSSCCEEESCSEEEEETTSCEECCEEES-SGGGGSSEEEEEGGGCCCCSSCCEECCS----SSCCEETTCCGGG
T ss_pred             EEEEEcCccccccccCCeEEEcCCCcEEEeeeCC-CCCcceeEEEEecCCCccccCCcccccC----CceEEECCCCHHH
Confidence            35667777763 4446677899999999999995 422 268999997 44444443332221    3449999999999


Q ss_pred             CeeEEEEEEeCCCcc-eeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         79 SGNYSCTVRNMVAED-TQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~-~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      +|.|+|.+.+..+.. +..+.|.|..    +|.+...+.. ..+..|+.+.|.|.+....+++.+.|++++..+......
T Consensus       156 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~  234 (292)
T 4dkd_C          156 SQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAE-LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS  234 (292)
T ss_dssp             CSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSC-BCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEE
T ss_pred             CeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCc-eeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccc
Confidence            999999999876653 4578888886    5555443332 456789999999999633445789999998876544322


Q ss_pred             eEEee-ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee
Q psy11132        154 NVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN  200 (243)
Q Consensus       154 ~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~  200 (243)
                      ..... ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.+.
T Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          235 DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES  282 (292)
T ss_dssp             EEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             eeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence            11111 112468999999999999999999999999999999988744

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.92  E-value=1.1e-24  Score=170.76  Aligned_cols=216  Identities=18%  Similarity=0.254  Sum_probs=141.7

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCC----ceeEEEECC--eeec------------CCCceEEEEeeeeceEEEEeecCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDIP----LTIKWLKDG--RYLD------------NSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~----~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      .+..+.+.+|+++.|.|.+. +.+.    +.+.|++++  ..+.            ...++.... ......|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~   84 (438)
T 1qgc_4            7 SPASLAVSLGQRATISCRAS-ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG-SRTDFTLTIDPVEA   84 (438)
T ss_dssp             ECSEEEECTTSCEEEEEEES-SCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE-ETTEEEEEESSCCG
T ss_pred             cCCeEEeeCCCCEEEEEecC-CCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc-cCCcEEEEeCCCcC
Confidence            35566789999999999984 5554    489999963  2210            123443332 22356899999999


Q ss_pred             CCCeeEEEEEEeCCCcc-eeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCC
Q psy11132         77 RHSGNYSCTVRNMVAED-TQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRF  151 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~  151 (243)
                      +|+|.|+|.+.+..+.. .....|.|..   +|.+...... .....|+.+.|.|.+.++.|.+ .+.|+++|..+....
T Consensus        85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  163 (438)
T 1qgc_4           85 DDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  163 (438)
T ss_dssp             GGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             cCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCc
Confidence            99999999999876642 3445666653   3333322211 1223578999999996547776 999999999887551


Q ss_pred             CeeEEe---ecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee--cCCCCCeeeeeccceeeeccCcc
Q psy11132        152 PVNVSD---LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN--LNRLPPSYTLVFSQASYMSTSYY  223 (243)
Q Consensus       152 ~~~~~~---~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~--~~~~~p~~~~~~~~~~~~~~~~~  223 (243)
                      ......   .++   ..+.|.|.++..+|+|.|+|.|.|..+.......+.....  ....|+...+..++.+.+.|...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  243 (438)
T 1qgc_4          164 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTAS  243 (438)
T ss_dssp             EEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEE
T ss_pred             eeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEc
Confidence            110000   011   1357999999999999999999998887533332221100  00023345567788899999876


Q ss_pred             ccc----ccceEEe
Q psy11132        224 SFE----QDSWMID  233 (243)
Q Consensus       224 ~~~----~~~W~~~  233 (243)
                      ..+    .+.|+++
T Consensus       244 g~p~~~~~v~W~k~  257 (438)
T 1qgc_4          244 GFIFNRCAMSWVRQ  257 (438)
T ss_dssp             SSCGGGSCEEEEEE
T ss_pred             ccccCCcEEEEEEC
Confidence            443    7999998

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.92  E-value=2.4e-25  Score=167.76  Aligned_cols=228  Identities=14%  Similarity=0.179  Sum_probs=138.0

Q ss_pred             cCCCccCCCCCcccccC--CeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE-EEEee---eeceEEEEeecCCCCCe
Q psy11132          8 VPPKLSPTNPERTLNVG--ERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS-ITHVD---QYNSMLVIDSVSARHSG   80 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g--~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~-~~~~~---~~~~~l~i~~~~~~d~G   80 (243)
                      .||.+...+.......|  +.+.|.|.+.+..| .+.|.|+++|..+....... ....+   ...+.|.|......|.|
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence            46666655433333334  69999999975444 47999999999886543211 11111   11346788888888999


Q ss_pred             eEEEEEEeCCCcceeEEEEEEE---cCCCccccccCCCCCCCCCcEEEEEEeecCCCCC---EEEEEeCC-EecCCCCCe
Q psy11132         81 NYSCTVRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL---TIRWLKDG-KPLSPRFPV  153 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~-~~~~~~~~~  153 (243)
                      .|+|.+.+..+.....+.+.+.   ..|.+....+....+..|+.+.|.|.+.+..|.+   .+.|++++ ..+......
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~  165 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRK  165 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCE
T ss_pred             cEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCC
Confidence            9999999876544332221011   1122211111112356799999999995445555   99999975 443322211


Q ss_pred             eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee-cCCCCCeeeeec-------cceeeeccCc
Q psy11132        154 NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN-LNRLPPSYTLVF-------SQASYMSTSY  222 (243)
Q Consensus       154 ~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~-~~~~~p~~~~~~-------~~~~~~~~~~  222 (243)
                      .....++   ..+.|.|.++..+|+|.|+|.|.|..+....  .+.|... ....+|.+.+.+       ++.+.+.|..
T Consensus       166 ~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~  243 (323)
T 2wqr_A          166 EEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLI  243 (323)
T ss_dssp             EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEE
T ss_pred             CccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEe
Confidence            1101111   2457999999999999999999998753322  3333211 112455544321       6788999988


Q ss_pred             ccc-c---ccceEEeCCee
Q psy11132        223 YSF-E---QDSWMIDNENY  237 (243)
Q Consensus       223 ~~~-~---~~~W~~~~~~~  237 (243)
                      ..+ +   .+.|++||+.+
T Consensus       244 ~g~~p~~~~v~W~k~g~~l  262 (323)
T 2wqr_A          244 QNFMPEDISVQWLHNEVQL  262 (323)
T ss_dssp             EEEBSSCCEEEEEETTEEC
T ss_pred             eeeeCCCcEEEEEECCEEC
Confidence            663 2   69999998754

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=6.6e-25  Score=172.27  Aligned_cols=226  Identities=14%  Similarity=0.162  Sum_probs=141.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +|.+........+.+|+.+.|.|.+.+..|.+ .+.|++++..+..  .........-...+.|.|.+++.+| |.|+|.
T Consensus       123 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~  201 (444)
T 1igt_B          123 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCN  201 (444)
T ss_dssp             CCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEE
T ss_pred             CCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEE
Confidence            45444333333457899999999997545665 9999999875321  0111000000113579999999899 999999


Q ss_pred             EEeCCCcceeEEEEEEE------------------cCCCccccccCCCC-CCCCCcEEEEEEeecCC---C-CCEEEEEe
Q psy11132         86 VRNMVAEDTQVQRLIVN------------------VPPKIESFAFPFDG-LPEGARTRVICGVTHGD---P-PLTIRWLK  142 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~------------------~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~---p-~~~~~W~~  142 (243)
                      +.|..+.......+.+.                  .+|.+...++.... +..|+.+.|.|.+. |.   | .+.+.|++
T Consensus       202 a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~-g~~~~p~~~~v~W~k  280 (444)
T 1igt_B          202 VAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVV-DVSEDDPDVQISWFV  280 (444)
T ss_dssp             EEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEE-EECTTCCCCEEEEEE
T ss_pred             EEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEe-ecccCCCCeEEEEEE
Confidence            99988865433333221                  12222121111111 47899999999996 55   3 46999999


Q ss_pred             CCEecCCCCCeeEEee-c---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeec------
Q psy11132        143 DGKPLSPRFPVNVSDL-D---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF------  212 (243)
Q Consensus       143 ~~~~~~~~~~~~~~~~-~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~------  212 (243)
                      ++..+........... +   ...+.|.|.++..+|+|.|+|.|.|..|.......+.+. .....+|.+.+.+      
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~  359 (444)
T 1igt_B          281 NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKP-KGSVRAPQVYVLPPPEEEM  359 (444)
T ss_dssp             TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECC-CCCCBCCEEEEECCCGGGT
T ss_pred             CCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEecc-CCCCCCCEEEEeCCChHHc
Confidence            9988764432211111 1   124679999999999999999999998866333333220 0122566655432      


Q ss_pred             -cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        213 -SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       213 -~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                       +..+.+.|...++ |   .++|+++|..+
T Consensus       360 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l  389 (444)
T 1igt_B          360 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTE  389 (444)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCeEEEEEEEEeeeCCCCEEEEEECCEEc
Confidence             2357899988763 3   79999998654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.92  E-value=2.6e-24  Score=157.30  Aligned_cols=168  Identities=20%  Similarity=0.187  Sum_probs=127.1

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.+..+|... .+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...         .....|.|.+++.+|.|.
T Consensus        76 ~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~---------~~~~~l~i~~~~~~d~G~  145 (262)
T 3rjd_A           76 IQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF---------HWNSNLTILKTNISHNGT  145 (262)
T ss_dssp             EEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------EECCCEEESSCCGGGCEE
T ss_pred             EEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---------CCCCeEEEEECChhhCEE
Confidence            456666665333 3445668899999999999667788899999999877432         125679999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCC-C----EEEEEeCCEecCCCCCeeE
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPP-L----TIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~-~----~~~W~~~~~~~~~~~~~~~  155 (243)
                      |+|.+.+..+..+..+.|.|...+..+ ........+..|+.+.|.|.+ .+.|. +    .+.|++++..+...     
T Consensus       146 Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~~~~~~~-----  219 (262)
T 3rjd_A          146 YHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGSKTLRGR-----  219 (262)
T ss_dssp             EEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEEC-CCCCC-----EEEEEEETTEEEEEE-----
T ss_pred             EEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCCcEeccc-----
Confidence            999999988777778888888642211 111223457789999999999 57664 4    47899999876521     


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                          .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       220 ----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          220 ----NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             ----ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ----CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence                124679999999999999999999999965

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=8.3e-24  Score=153.70  Aligned_cols=188  Identities=15%  Similarity=0.197  Sum_probs=124.1

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +..+|.+...+. ..+.+|++++|.|.+. + +.+.+.|+|++..+.................|.|.+++.+|+|.|+|.
T Consensus         4 ~~~kP~i~~~P~-~~V~~G~~VtL~C~~~-~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (257)
T 1b6u_A            4 VHRKPSLLAHPG-PLVKSEETVILQCWSD-V-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY   80 (257)
T ss_dssp             -CCCCEECCBSC-SEEESSCCEEEEEEES-S-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred             cCCCCEEEEcCC-CEecCCCCEEEEEecC-C-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence            345677776664 6688999999999984 3 456899999987543211000000112257899999999999999999


Q ss_pred             EEeCC-----CcceeEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec
Q psy11132         86 VRNMV-----AEDTQVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD  159 (243)
Q Consensus        86 ~~~~~-----~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  159 (243)
                      +.+..     ...+..+.|.|...+..+ ....+...+.+|++++|.|.+ .+. ++.+.|+|+|..+............
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~-~~~-~~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS-RSS-YDMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC-SSC-CSEEEEEETTSSCEECCBCBCCSSS
T ss_pred             EeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC-CCC-CcEEEEEECCcccCcccccccccCC
Confidence            98642     124566778887542211 111222467899999999998 454 4799999999866432211111111


Q ss_pred             cceeEEEEeecCCCCCeeEEEEEEccCc-----ceeeeEEEEEEee
Q psy11132        160 SFSSLLSINSVSAAHSGEYTCVASNTAA-----QARYSSKLQVKGN  200 (243)
Q Consensus       160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g-----~~~~~~~l~v~~~  200 (243)
                      .....|.|.+++  |+|.|+|.|.+...     ..+..+.|.|.+.
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~  202 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN  202 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred             ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc
Confidence            235789999998  99999999997532     2344577777743

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.92  E-value=6.6e-25  Score=152.24  Aligned_cols=161  Identities=16%  Similarity=0.216  Sum_probs=119.6

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCee--ecC------------CCceEEEEe--eeeceEEEEeecCCCCCee
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRY--LDN------------SAALSITHV--DQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~   81 (243)
                      .+.+.+|+++.|.|.+. +.+.+.+.|++++..  +..            ..+......  ..+...|.|.+++.+|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCS-SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEEc-CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            45688999999999985 777789999999863  211            111111110  1124569999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF  161 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  161 (243)
                      |+|.+.+..+    .+.|.|...+   .  .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.           ..
T Consensus        83 Y~C~~~~~~~----~~~l~V~~~~---~--~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~-----------~~  141 (184)
T 2ny1_B           83 YICEVEDQKE----EVQLLVFGLT---A--NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNI-----------QG  141 (184)
T ss_dssp             EEEEETTEEE----EEEEEEEEEE---E--SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCEE-----------EE
T ss_pred             EEEEEEcCCC----cEEEEEEEec---C--CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCccc-----------cC
Confidence            9999987643    4455555311   1  122456789999999999 578999999999876541           12


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEee
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGN  200 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~  200 (243)
                      ...|.|.++..+|+|.|+|.|.|..+.....+.|.|.+.
T Consensus       142 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          142 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence            467999999999999999999999999999999998843

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.92  E-value=2.2e-24  Score=149.74  Aligned_cols=145  Identities=21%  Similarity=0.390  Sum_probs=109.0

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEee-cCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS-VSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ...+|+++.|.|.+. + +. .+.|+|+|..+....          +..|.|.+ ++.+|+|.|+|.+.|..+.....+.
T Consensus        10 v~~~G~~v~L~C~~~-~-~~-~i~W~k~g~~l~~~~----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   76 (186)
T 1jbj_A           10 VSISGTSVELTCPLD-S-DE-NLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK   76 (186)
T ss_dssp             EEEETTEEEEECSSC-C-CT-TCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred             EEeCCcEEEEEEeCC-C-CC-ceEEEECCEECCCCC----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence            356799999999985 4 33 499999999887641          45799999 9999999999999998887555555


Q ss_pred             EEEEcCCCccc------------------cccC------CCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCee
Q psy11132         99 LIVNVPPKIES------------------FAFP------FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        99 l~v~~~p~~~~------------------~~~~------~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~  154 (243)
                      +.|...+....                  ....      ...+..|+++.|.|.+    |.+.+.|+++|..+.....  
T Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~~--  150 (186)
T 1jbj_A           77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLNA--  150 (186)
T ss_dssp             CCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSSC--
T ss_pred             EEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECcccCC--
Confidence            54433211110                  0000      0123489999999976    7789999999999874321  


Q ss_pred             EEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                            ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 ------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 ------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                  24679999999999999999999998865

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.92  E-value=5.8e-25  Score=183.46  Aligned_cols=206  Identities=21%  Similarity=0.401  Sum_probs=64.0

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEE-------EeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSIT-------HVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      ...+.+|+.++|.|.+.+. .+.+.+.|++++..+.........       ........|.|.+++.+|+|.|+|.+.+.
T Consensus       233 ~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  312 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG  312 (772)
T ss_dssp             CEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECS
T ss_pred             ceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcC
Confidence            3678999999999999633 455689999998876543322111       11223578999999999999999999998


Q ss_pred             CCcceeEEEEEEEcCCCccccc--cCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEE
Q psy11132         90 VAEDTQVQRLIVNVPPKIESFA--FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI  167 (243)
Q Consensus        90 ~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i  167 (243)
                      .+..+..+.|.|..+|.+....  .....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.......      ....|.|
T Consensus       313 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~~~~~~------~~~~L~i  385 (772)
T 3v2a_R          313 LMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLESNHTIK------AGHVLTI  385 (772)
T ss_dssp             SCEEEEEEEEEEECCCC---------------------------------------------------------------
T ss_pred             CcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCCCceEc------cceeEEE
Confidence            8888888899998887665432  122557889999999999 588999999999998877532211      2477999


Q ss_pred             eecCCCCCeeEEEEEEccCccee--eeEEEEEEeecCCCCCee----------eeeccceeeeccCccccc--c-cceEE
Q psy11132        168 NSVSAAHSGEYTCVASNTAAQAR--YSSKLQVKGNLNRLPPSY----------TLVFSQASYMSTSYYSFE--Q-DSWMI  232 (243)
Q Consensus       168 ~~~~~~d~g~y~C~~~n~~g~~~--~~~~l~v~~~~~~~~p~~----------~~~~~~~~~~~~~~~~~~--~-~~W~~  232 (243)
                      .++..+|+|.|+|.|.|..|...  ..+.+.|.     .||.+          .+..++.+.+.|.....+  . +.|++
T Consensus       386 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~-----~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  460 (772)
T 3v2a_R          386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVY-----VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW  460 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCChhcCceEEEEEEECCcCeEEEEEEEEEEe-----cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEE
Confidence            99999999999999999988654  34555555     33332          245677888999877654  4 99999


Q ss_pred             eCC
Q psy11132        233 DNE  235 (243)
Q Consensus       233 ~~~  235 (243)
                      ++.
T Consensus       461 ~~~  463 (772)
T 3v2a_R          461 QLE  463 (772)
T ss_dssp             ---
T ss_pred             cCC
Confidence            743

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.91  E-value=1.5e-23  Score=150.44  Aligned_cols=169  Identities=19%  Similarity=0.322  Sum_probs=118.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeec---------CCCceEEEEe----------eeeceEEEEeecC
Q psy11132         16 NPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLD---------NSAALSITHV----------DQYNSMLVIDSVS   75 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~---------~~~~~~~~~~----------~~~~~~l~i~~~~   75 (243)
                      +....+.+|+.+.|.|.+. +.+. +.+.|++++....         ....+.....          ......|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPT-GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CSEEEEETTCCEEECCCCB-SCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCcEEEEcCCCEEEecccC-CCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            5567789999999999995 6663 7999998654321         0010111111          1113459999999


Q ss_pred             CCCCeeEEEEEEeCC-CcceeEEEEEEEcCCCcccccc--CCCCCCCCCcE-EEEEEeecCCCCCEEEEEeCCEecCCCC
Q psy11132         76 ARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAF--PFDGLPEGART-RVICGVTHGDPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~p~~~~~~~--~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~~~~~~~~~  151 (243)
                      .+|+|.|+|.+.+.. +.....+.|.|..+|..+....  ....+..|+.+ .|.|.+..+.|.+.+.|++++..+....
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            999999999999887 6677888899988776543322  22346688888 9999995688999999999999887654


Q ss_pred             ----CeeEEee---cc-----ceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        152 ----PVNVSDL---DS-----FSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       152 ----~~~~~~~---~~-----~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                          .......   ..     ..+.|.|.....+|.|.|+|.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence                2222111   00     0256888755555699999999994

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.91  E-value=2.9e-24  Score=152.22  Aligned_cols=176  Identities=14%  Similarity=0.234  Sum_probs=120.3

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +...+ ...+.+|++++|.|.+.   +.+.+.|+++  +..+.            ...++.... .....+|.|.+++.+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~   78 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGNTASLTVSGLQTD   78 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEEESCCGG
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCCEEEEEECCCChh
Confidence            33344 67789999999999984   7779999994  22211            123444333 233578999999999


Q ss_pred             CCeeEEEEEEeCCC--cceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCC-CCCEEEEEeCCEecCCC
Q psy11132         78 HSGNYSCTVRNMVA--EDTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGD-PPLTIRWLKDGKPLSPR  150 (243)
Q Consensus        78 d~G~Y~C~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~  150 (243)
                      |+|.|+|.+.+..+  .......|.|.    .+|.+...+.. ..+..|+.+.|.|.+.+.. |.+.+.|+++|..+...
T Consensus        79 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  157 (211)
T 3tv3_L           79 DEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG  157 (211)
T ss_dssp             GCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC-HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             HCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCc-hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCC
Confidence            99999999999876  34555677777    34444333222 2233699999999995333 36899999999988653


Q ss_pred             CCeeE--Eeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        151 FPVNV--SDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       151 ~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      .....  ...++   ..+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          158 VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             cccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            21111  11111   135688888888899999999999887665554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.91  E-value=7.1e-24  Score=149.07  Aligned_cols=174  Identities=18%  Similarity=0.259  Sum_probs=118.2

Q ss_pred             CcccccCCeEEEEEEeeCC---CCCceeEEEECCeeecC------------CCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132         18 ERTLNVGERASLICSITKG---DIPLTIKWLKDGRYLDN------------SAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~---~~~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .+.+.+|+++.|.|.+...   .+.+.+.|++++..+..            ..+..+.  .....+|.|.+++.+|+|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~--~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD--ITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE--STTTTEEEECSCCGGGCEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc--cCCCcEEEEecccchhCeEE
Confidence            3568899999999998522   24568999999887621            1122211  12256899999999999999


Q ss_pred             EEEEEeCCCcc-----eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         83 SCTVRNMVAED-----TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        83 ~C~~~~~~~~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      +|.+.+..+..     ...+.|.|..++..+....  .....|+.+.|.|.+..|.|.|.+.|+++|..+..........
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~--~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD--FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE--EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCCCCCceEe--ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            99999976643     3466777766533222111  1124588999999996589999999999998887543222221


Q ss_pred             ec-cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        158 LD-SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       158 ~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .. .......+..+..+|.|.|+|.|.|..|.....+.+
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            11 111222334556789999999999999987766554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.91  E-value=1.9e-24  Score=154.29  Aligned_cols=180  Identities=21%  Similarity=0.305  Sum_probs=122.0

Q ss_pred             CCcccccCCeEEEEEEeeCCCCC-----ceeEEEECCeeec-------------CCCceEEEE--eeeeceEEEEeecCC
Q psy11132         17 PERTLNVGERASLICSITKGDIP-----LTIKWLKDGRYLD-------------NSAALSITH--VDQYNSMLVIDSVSA   76 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~-----~~v~W~~~~~~~~-------------~~~~~~~~~--~~~~~~~l~i~~~~~   76 (243)
                      +.+.+.+|++++|.|.+. +.+.     +.+.|++++....             ...+..+..  ......+|.|.+++.
T Consensus         3 ~~v~~~~G~~v~L~C~~~-~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFS-PEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCTTSCEEECCBCC-CCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CCEEEECCCCeEEEEEec-CCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            346688999999999985 4432     6899999874320             011111110  011256799999999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCCCcccc-ccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCee
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF-AFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVN  154 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~  154 (243)
                      +|+|.|+|.+.+. +..+..+.|.|..++..+.. ......+..|+.+.|.|.+..+.|.+.+.|++ ++..+.......
T Consensus        82 ~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           82 TDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             GGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred             ccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence            9999999999975 34445556666655332221 12224567899999999996688999999999 455544322222


Q ss_pred             EEe-eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        155 VSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       155 ~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ... ..+....|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus       161 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          161 QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             EEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             EEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence            211 22223568899999999999999999999999999999988

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=4.7e-23  Score=148.62  Aligned_cols=179  Identities=17%  Similarity=0.262  Sum_probs=125.8

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..+|.+...+.. .+.+|++++|.|.+. + +...+.|+|++..+......  .........|.|.+++.+|+|.|+|.+
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~-~-~~~~~~w~k~g~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGN-Y-GAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECC-T-TCCEEEEEETTEEEEEECCS--SCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeC-C-CCcEEEEEECCCcccccccc--ccCCcceeEEEecCCCcccCeEEEEEE
Confidence            456777766655 789999999999984 3 44589999999876421000  001112567999999999999999999


Q ss_pred             EeCCC--cceeEEEEEEEcC---CCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132         87 RNMVA--EDTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF  161 (243)
Q Consensus        87 ~~~~~--~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  161 (243)
                      .+..+  ..+..+.|.|...   |.+..  .+...+.+|++++|.|.+ .+ +.+.+.|+|+|..+...     ......
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~--~p~~~v~~G~~vtL~C~~-~~-~~~~~~w~k~g~~~~~~-----~~~~~~  150 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMYDTPTLSV--HPGPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHVQ-----RGYGKV  150 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCSCCCEEEE--ESCSEEETTCEEEEEEEC-TT-SCSEEEEEECSSSCEEE-----EEECSS
T ss_pred             ecCCccccCCcceEEEeecccCCCceEc--cCCCccCCCCcEEEEEec-CC-CCCEEEEEECCCccCcc-----ccCCCc
Confidence            87543  2456677887752   33322  222456789999999998 34 35699999998765431     112234


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccC---cceeeeEEEEEEe
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTA---AQARYSSKLQVKG  199 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~---g~~~~~~~l~v~~  199 (243)
                      ...|.|.+++.+|+|.|+|.+.|..   ...+..+.|.|.+
T Consensus       151 ~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          151 QAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             EEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             eEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            6789999999999999999999874   2334567777774

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.91  E-value=7.3e-24  Score=150.85  Aligned_cols=180  Identities=17%  Similarity=0.311  Sum_probs=117.2

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCC-CCceeEEEECC--ee-------------ec---CCCceEEEEeeeeceEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDG--RY-------------LD---NSAALSITHVDQYNSMLV   70 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~-------------~~---~~~~~~~~~~~~~~~~l~   70 (243)
                      |.+...+ ...+.+|++++|.|.+. +. +.+.+.|+|..  ..             ..   ...++.+.. .....+|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~   78 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLN-SQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLS   78 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEEC-GGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-ETTEEEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECC-CCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-CCceEEEE
Confidence            3444445 67789999999999995 55 77899999832  11             00   012343332 23357899


Q ss_pred             EeecCCCCCeeEEEEEEeCCC-----cceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEE
Q psy11132         71 IDSVSARHSGNYSCTVRNMVA-----EDTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRW  140 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  140 (243)
                      |.+++.+|+|.|.|.+.+..+     .......|.|...    |.+...... .....|+.+.|.|.+.++.|++ .+.|
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~-~~~~~~~~v~L~C~~~g~~p~~~~v~W  157 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPS-SEELKENKATLVCLISNFSPSGVTVAW  157 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCC-cccccCCcEEEEEEECcccCCCeEEEE
Confidence            999999999999999998765     2344567788743    333322211 2234578999999996446666 9999


Q ss_pred             EeCCEecCCCCCee--EEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        141 LKDGKPLSPRFPVN--VSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       141 ~~~~~~~~~~~~~~--~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      +++|..+.......  .....  ...+.|.|.....+|+|.|+|.|.|..+....++
T Consensus       158 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          158 KANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            99999887532111  01111  1124588888888889999999999987665443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.91  E-value=5.2e-24  Score=151.08  Aligned_cols=171  Identities=20%  Similarity=0.281  Sum_probs=116.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee----------c--CCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL----------D--NSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +....+.+|+++.|.|.+. +.+.+.+.|++++  ..+          .  ...++.... ......|.|.+++.+|+|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRAS-QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETEDFGM   85 (213)
T ss_dssp             CSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CccEEEeCCCcEEEEEECC-CCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-CCCEEEEEECCCChhhCEE
Confidence            4566789999999999985 6677789999853  211          1  113444332 2234689999999999999


Q ss_pred             EEEEEEeCCCcc-eeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCC-CCee-
Q psy11132         82 YSCTVRNMVAED-TQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR-FPVN-  154 (243)
Q Consensus        82 Y~C~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~-~~~~-  154 (243)
                      |+|.+.+..+.. .....|.|..   +|.+...... .....|+.+.|.|.+.++.|++ .+.|+++|..+... .... 
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  164 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT  164 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEEC
T ss_pred             EEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCC
Confidence            999999876642 2334666654   3433332221 2233688999999996436655 89999999988755 1100 


Q ss_pred             EEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        155 VSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       155 ~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ... .++   ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          165 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            000 010   13589999999999999999999987654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.91  E-value=1.9e-23  Score=147.94  Aligned_cols=171  Identities=20%  Similarity=0.313  Sum_probs=115.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee------------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL------------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +....+.+|++++|.|.+. +.+.+.+.|++++  ..+            ....++.... ......|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~   84 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKAS-ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-SGTDFTLTIDPVEADDTAI   84 (210)
T ss_dssp             CSEEEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEEcCCCCEEEEeeCC-CccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-cCCEEEEEECCCCHHHCeE
Confidence            5567789999999999985 6667789999842  221            1123444332 2234689999999999999


Q ss_pred             EEEEEEeCCCcc-eeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCC-CCe-e
Q psy11132         82 YSCTVRNMVAED-TQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPR-FPV-N  154 (243)
Q Consensus        82 Y~C~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~-~~~-~  154 (243)
                      |.|.+.+..+.. .....|.|..   +|.+...... ..+..|+.+.|.|.+.+..|+ +.+.|+++|..+... ... .
T Consensus        85 Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  163 (210)
T 1lk3_L           85 YFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS-TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT  163 (210)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred             EEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc-hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence            999999876542 2334666654   3333332221 223479999999999544555 499999999988755 111 0


Q ss_pred             EEe-ec---cceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        155 VSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       155 ~~~-~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ... .+   ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            000 11   113579999999999999999999987644

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.91  E-value=3.6e-23  Score=155.46  Aligned_cols=189  Identities=19%  Similarity=0.212  Sum_probs=119.9

Q ss_pred             eEEEec---CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          3 VIFSTV---PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         3 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|.+..   +|.+...+... +.+|+.++|.|.+.  .+++.+.|++++..+.................|.|.+++.+|+
T Consensus       110 ~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~  186 (316)
T 3vh8_G          110 VIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD--IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA  186 (316)
T ss_dssp             EEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES--SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGC
T ss_pred             EEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC--CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhC
Confidence            455543   34555444433 88999999999983  3455899999998765432211111122357899999999999


Q ss_pred             eeEEEEEEeCCCc-----ceeEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         80 GNYSCTVRNMVAE-----DTQVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        80 G~Y~C~~~~~~~~-----~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      |.|+|.+.|..+.     .+..+.|.|...+..+ ....+...+.+|+.+.|.|.+ . .|.+.+.|+++|..+......
T Consensus       187 G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~~~~~~  264 (316)
T 3vh8_G          187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSS-R-SSYDMYHLSREGGAHERRLPA  264 (316)
T ss_dssp             EEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCCEEEEC
T ss_pred             ceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEEC-C-CCCcEEEEEECCCcCCCceec
Confidence            9999999988763     2556677776532221 111222467889999999998 3 477899999999876532111


Q ss_pred             eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc-----eeeeEEEEEE
Q psy11132        154 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-----ARYSSKLQVK  198 (243)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-----~~~~~~l~v~  198 (243)
                      ...........|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       265 ~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  312 (316)
T 3vh8_G          265 VRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVT  312 (316)
T ss_dssp             EECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC---
T ss_pred             eeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEe
Confidence            111112224689999998  999999999997653     3445666666

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.91  E-value=6.5e-24  Score=155.78  Aligned_cols=184  Identities=19%  Similarity=0.317  Sum_probs=120.6

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeC--CCCCceeEEEECCeeecCC------------------CceEEEE-eeeece
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLDNS------------------AALSITH-VDQYNS   67 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~~~~~~~------------------~~~~~~~-~~~~~~   67 (243)
                      .+.+...+....+.+|+++.|.|.+..  +.+.+.+.|++++......                  .+..+.. ....+.
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            455666677788999999999999841  4566789999965432111                  1221110 011237


Q ss_pred             EEEEeecCCCCCeeEEEEEEeCCCcc--eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEee--cCCCCCEEEEEeC
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNMVAED--TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT--HGDPPLTIRWLKD  143 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~  143 (243)
                      +|.|.+++.+|+|.|+|.+.+..+..  ...+.|.|.  +..+    ....+..|+.+.|.|.+.  .+.|.+.+.|+++
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~~p----~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PEEP----RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CCCC----SEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--ccCC----CccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            79999999999999999999876544  334455543  2211    124567899999999983  4668899999984


Q ss_pred             -CEecCCCC---------------------CeeEE-eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        144 -GKPLSPRF---------------------PVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       144 -~~~~~~~~---------------------~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                       +.......                     +.... ........|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence             32111100                     00000 001235689999999999999999999999988888888885

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.90  E-value=3.2e-23  Score=163.31  Aligned_cols=218  Identities=16%  Similarity=0.235  Sum_probs=138.5

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEEC--Cee---e--------------cCCCceEEEEee-eeceEEEEeec
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKD--GRY---L--------------DNSAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~---~--------------~~~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      ....+.+|++++|.|.+. +.+  .+.+.|+|+  +..   +              ....++.+.... .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            8 GAEVKKPGASVKVSCQAS-GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCEEECTTCCEEECEEEE-SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEcCCCCEEEEEEec-CccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            345688999999999996 544  568999984  221   1              012344433221 23468999999


Q ss_pred             CCCCCeeEEEEEEeCCC------------cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CE
Q psy11132         75 SARHSGNYSCTVRNMVA------------EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LT  137 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~  137 (243)
                      +.+|+|.|+|.+.+..+            .......|.|..    +|.+..... ...+..|+.+.|.|.+.+..|. +.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC-CSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc-cccccCCCcEEEEEEEeEEeCCCeE
Confidence            99999999999998754            122445677764    233322222 2446789999999999643464 89


Q ss_pred             EEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec------------C
Q psy11132        138 IRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL------------N  202 (243)
Q Consensus       138 ~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~------------~  202 (243)
                      +.|++++..+...........++   ..+.|.|..+..+| |.|+|.|.|..+.......+.+....            .
T Consensus       166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  244 (457)
T 1hzh_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPEL  244 (457)
T ss_dssp             EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCC
T ss_pred             EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccc
Confidence            99999986543111001111111   13578999999888 99999999988765544444332110            0


Q ss_pred             CCCCee-e--------eeccceeeeccCcccc-c-----ccceEEeCCee
Q psy11132        203 RLPPSY-T--------LVFSQASYMSTSYYSF-E-----QDSWMIDNENY  237 (243)
Q Consensus       203 ~~~p~~-~--------~~~~~~~~~~~~~~~~-~-----~~~W~~~~~~~  237 (243)
                      ..+|.+ .        +..++.+.+.|..... +     .+.|+++|..+
T Consensus       245 ~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~  294 (457)
T 1hzh_H          245 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV  294 (457)
T ss_dssp             SSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEE
T ss_pred             cCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccc
Confidence            124443 1        2236678889987665 2     79999999654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=155.00  Aligned_cols=204  Identities=15%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.+........+.+|+++.|.|.+. +.    +.|++++..+..  +............|.|.+++.+|+|.|+|.+.|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~-~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   73 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGS-AP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS   73 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEES-SC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-
T ss_pred             CeecCCCCeEEEeCCCcEEEEEecc-ce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEccc
Confidence            5566666678899999999999984 43    999999987732  1111111122478999999999999999999988


Q ss_pred             CCc---ceeEEEEEEEcCCCccccccCC---CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecccee
Q psy11132         90 VAE---DTQVQRLIVNVPPKIESFAFPF---DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS  163 (243)
Q Consensus        90 ~~~---~~~~~~l~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  163 (243)
                      .+.   ....+.+.|..+..........   ..+.+|+.+.|.|.+.  .|.+.+.|++.+.........     +....
T Consensus        74 ~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~w~~~~~~~~~~~~~-----~~~~~  146 (289)
T 3mjg_X           74 RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEKKGDVALPVPY-----DHQRG  146 (289)
T ss_dssp             -----CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEEEEESSCCSCCCCCE-----ETTTE
T ss_pred             CCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC--CCCceEEEEeCCCCCccceee-----cCCcC
Confidence            765   3344444444322221111111   3467899999999984  567788888865322211111     01111


Q ss_pred             EEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEEeecCCCCCee-------eeeccceeeeccCcccc--cccceEEe
Q psy11132        164 LLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSF--EQDSWMID  233 (243)
Q Consensus       164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~--~~~~W~~~  233 (243)
                      .+     ...|+|.|+|.|.|..+... ..+.+.+...   .+|.+       .+..++.+.+.|.....  +.+.|+++
T Consensus       147 ~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~---~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~  218 (289)
T 3mjg_X          147 FS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV---SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP  218 (289)
T ss_dssp             EE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC---CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECT
T ss_pred             ee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC---CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcC
Confidence            11     35789999999998776543 3455665521   23333       34557777888876544  48999976


Q ss_pred             CC
Q psy11132        234 NE  235 (243)
Q Consensus       234 ~~  235 (243)
                      ++
T Consensus       219 ~~  220 (289)
T 3mjg_X          219 RK  220 (289)
T ss_dssp             TS
T ss_pred             Cc
Confidence            64

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.90  E-value=1.2e-22  Score=144.14  Aligned_cols=171  Identities=22%  Similarity=0.318  Sum_probs=115.3

Q ss_pred             CCCcccccCCeEEEEEEeeCC------CCCceeEEEECCeeec-----------------CCCceEEEEe-eeeceEEEE
Q psy11132         16 NPERTLNVGERASLICSITKG------DIPLTIKWLKDGRYLD-----------------NSAALSITHV-DQYNSMLVI   71 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~------~~~~~v~W~~~~~~~~-----------------~~~~~~~~~~-~~~~~~l~i   71 (243)
                      +..+.+.+|++++|.|.+...      .+.+.+.|+|++....                 ...++.+... .....+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            455678899999999998632      1467999999865210                 1123332211 122457999


Q ss_pred             eecCCCCCeeEEEEEEeCCCc----ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecC----CCCCEEEEEeC
Q psy11132         72 DSVSARHSGNYSCTVRNMVAE----DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG----DPPLTIRWLKD  143 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~  143 (243)
                      .+++.+|+|.|.|.+.+..+.    ....+.|.|..++..+....+ ..+.+|+.+.|.|.+. +    .|.+.+.|+++
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~~G~~v~L~C~~~-~~~~~~p~p~v~W~~~  164 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL-EPLESGRPTRLSCSLP-GSCEAGPPLTFSWTGN  164 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---CCCCTTCCEEEEEECT-TCCSCSSCCEEEEESS
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC-ccccCCCeEEEEEEec-cCCCCCCCceEEEeCC
Confidence            999999999999999987532    124677888775433322222 3467899999999984 5    37899999999


Q ss_pred             CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        144 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      +..+....       ....+.|.|..+..+|+|.|+|.|.|..+....+..+
T Consensus       165 ~~~~~~~~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          165 ALSPLDPE-------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             TTSSSCSS-------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             CCccCCCC-------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence            86543211       1235779999999999999999999987554433333

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.90  E-value=4.2e-24  Score=155.11  Aligned_cols=179  Identities=17%  Similarity=0.269  Sum_probs=113.7

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCc-----eeEEEECCeeecCC--------C---------ceEEEEeeeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPL-----TIKWLKDGRYLDNS--------A---------ALSITHVDQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~-----~v~W~~~~~~~~~~--------~---------~~~~~~~~~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.|.+     .+.|++++......        .         ++..........+|.|.+
T Consensus        10 p~~~~v~~G~~v~L~C~~~-g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIF-YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TSEEEEETTSCEEECCEEE-ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCeEEeCCCCEEEeeEEe-cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            3445688999999999995 44444     49999964322110        0         000000011235699999


Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCC
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFP  152 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~  152 (243)
                      ++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.  .....|+.+.|.|.+.++.|.+ .+.|++++..+.....
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence            999999999999999877777788899988887655433  3345678888999996447887 9999999865542210


Q ss_pred             -------eeEEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCcceee--eEEEEE
Q psy11132        153 -------VNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARY--SSKLQV  197 (243)
Q Consensus       153 -------~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~l~v  197 (243)
                             ..... .++   ..+.|.+.....+|.|.|+|.|.|..+....  .+.|.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                   00111 111   1356888888889999999999999886444  455555

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.90  E-value=9.4e-24  Score=154.75  Aligned_cols=168  Identities=17%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.|..+|..........+.+|+.+.|.|.+.   |.+.+.|  +|..+....         ....|.|..+..+|.|.
T Consensus        91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~---p~~~i~W--~g~~~~~~~---------~~~~l~i~~~~~~~~g~  156 (265)
T 2oz4_A           91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PRAKVTL--NGVPAQPLG---------PRAQLLLKATPEDNGRS  156 (265)
T ss_dssp             EEEEEECCCCCEEEESCSEEETTCEEEEEEECC---TTSEEEE--SSCSSSCCS---------SEECCEEECCGGGTTEE
T ss_pred             EEEEEeCCCCceeecCCceecCCCcEEEEEEcc---CCCEEEE--CCEEccCCC---------CcEEEEEccccccCCce
Confidence            356666533322223456688999999999984   7789999  777663322         14568899999999999


Q ss_pred             EEEEEEeCC-Ccce---eEEEEEEEcCCCcccccc-CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132         82 YSCTVRNMV-AEDT---QVQRLIVNVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  156 (243)
Q Consensus        82 Y~C~~~~~~-~~~~---~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  156 (243)
                      |+|.+.+.. |...   ..+.|.|..+|.+..... ....+.+|+.+.|.|.+ .|.|.+.+.|++++..+...      
T Consensus       157 Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~~~~~~------  229 (265)
T 2oz4_A          157 FSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPI------  229 (265)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEECCT------
T ss_pred             EEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCcccCCC------
Confidence            999998544 5543   677888888777654432 22356789999999999 69999999999998732221      


Q ss_pred             eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                            ..+  ..+..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       230 ------g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          230 ------GES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             ------TSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ------CcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence                  111  2378899999999999999999999999887

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.90  E-value=6.3e-23  Score=145.41  Aligned_cols=174  Identities=17%  Similarity=0.289  Sum_probs=115.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC---CceeEEEECC--eee------------cCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDI---PLTIKWLKDG--RYL------------DNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +....+.+|++++|.|.+. +.+   .+.+.|++++  ..+            ....++.... ......|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D   84 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSS-TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-IGDKAALTITGAQTED   84 (212)
T ss_dssp             CSEEEECTTCCEEEEEEES-SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGG
T ss_pred             CCeEeecCCCCEEEEEEec-ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-eCCEEEEEECCCCccC
Confidence            5566789999999999995 544   4689999863  222            1123443332 2234689999999999


Q ss_pred             CeeEEEEEEeCCCc-ceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCC
Q psy11132         79 SGNYSCTVRNMVAE-DTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP  152 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~-~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~  152 (243)
                      +|.|.|.+.+..+. ......|.|.    .+|.+...... .....|+.+.|.|.+.+..|+ ..+.|+++|..+.....
T Consensus        85 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~  163 (212)
T 1q0x_L           85 EAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME  163 (212)
T ss_dssp             CEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             CEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee
Confidence            99999999987653 2234456664    23333322221 223468899999999643454 39999999998865421


Q ss_pred             ee--EEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        153 VN--VSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       153 ~~--~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..  ....+   ...+.|.|..+..+|+|.|+|.|.|......++
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          164 TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            11  11111   123568899988999999999999987654443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.90  E-value=2.8e-23  Score=151.28  Aligned_cols=180  Identities=18%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCC-----CceeEEEECC--eee----------c--CCCceEEEEeeeece
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDI-----PLTIKWLKDG--RYL----------D--NSAALSITHVDQYNS   67 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~   67 (243)
                      ..+|.+...+....+.+|++++|.|.+. +.+     .+.+.|+|++  ..+          .  ...++.... .....
T Consensus        36 ~~~~~~~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~  113 (254)
T 2c1o_A           36 LRELVMTQSPLTLSVTIGQPASISCKSS-QSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-SGTDF  113 (254)
T ss_dssp             --CCCEEEECSEEEECTTSCEEEEEEES-SCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEE
T ss_pred             eeceeEEeCCceEEecCCCcEEEEeecc-CcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec-CCCEE
Confidence            3466666667788899999999999995 555     3799999843  221          1  123444332 22346


Q ss_pred             EEEEeecCCCCCeeEEEEEEeCCCcc-eeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEe
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLK  142 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~  142 (243)
                      +|.|.+++.+|+|.|+|.+.+..+.. .....+.|..   +|.+...... .....|+.+.|.|.+.+..|+ +.+.|++
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k  192 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  192 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCC-hhhccCCcEEEEEEEecccCCCcEEEEEE
Confidence            89999999999999999998875432 2234566653   3333322221 122357899999999533554 5799999


Q ss_pred             CCEecCCC-CC-eeEEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        143 DGKPLSPR-FP-VNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       143 ~~~~~~~~-~~-~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      +|..+... .. ..... .++   ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus       193 ~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          193 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             SSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            99887654 11 10000 011   14679999999999999999999987654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=2.8e-23  Score=163.07  Aligned_cols=219  Identities=18%  Similarity=0.235  Sum_probs=138.3

Q ss_pred             CCcccccCCeEEEEEEeeCCC-CCceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKGD-IPLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+.+.. +.+.+.|+|+.  ..+.                 ...++.+... .....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (444)
T 1igt_B            8 GGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLK   87 (444)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCC
Confidence            345688999999999996332 24689999853  2210                 1234443322 1224689999999


Q ss_pred             CCCCeeEEEEEEeCCCc---ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEec
Q psy11132         76 ARHSGNYSCTVRNMVAE---DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPL  147 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~  147 (243)
                      .+|+|.|.|.+.+..+.   ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++..+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  166 (444)
T 1igt_B           88 SEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  166 (444)
T ss_dssp             GGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             HHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCC
Confidence            99999999999986543   22345677763    2333222222 3457899999999996445765 99999988763


Q ss_pred             CCC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe-------------ecCCCCCeee---
Q psy11132        148 SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG-------------NLNRLPPSYT---  209 (243)
Q Consensus       148 ~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~-------------~~~~~~p~~~---  209 (243)
                      ...  ............+.|.|..+..+| |.|+|.|.|..+.......+.+.+             .....+|.+.   
T Consensus       167 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~  245 (444)
T 1igt_B          167 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFP  245 (444)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEEC
T ss_pred             CeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecC
Confidence            211  000000001113568899998889 999999999988754444333210             0011234331   


Q ss_pred             ------eeccceeeeccCcccc----c--ccceEEeCCee
Q psy11132        210 ------LVFSQASYMSTSYYSF----E--QDSWMIDNENY  237 (243)
Q Consensus       210 ------~~~~~~~~~~~~~~~~----~--~~~W~~~~~~~  237 (243)
                            +..++.+.+.|.....    +  .+.|+++|..+
T Consensus       246 p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~  285 (444)
T 1igt_B          246 PKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEV  285 (444)
T ss_dssp             CCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEEC
T ss_pred             CchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccc
Confidence                  2457788899987766    2  79999998654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.90  E-value=6.2e-23  Score=145.88  Aligned_cols=173  Identities=17%  Similarity=0.253  Sum_probs=113.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC-CceeEEEECC--eeec------------CCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         16 NPERTLNVGERASLICSITKGDI-PLTIKWLKDG--RYLD------------NSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      +....+.+|++++|.|.+..+.+ .+.+.|+|++  ..+.            ...++.... ......|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-SGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-cCCEEEEEECCCCcccCE
Confidence            45677899999999999533443 4699999954  2210            123444332 223568999999999999


Q ss_pred             eEEEEEEeCCC--cceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCee
Q psy11132         81 NYSCTVRNMVA--EDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        81 ~Y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~  154 (243)
                      .|.|.+.+..+  .......|.|..   +|.+...... .....|+.+.|.|.+.++.|++ .+.|+++|..+.......
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC-hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe
Confidence            99999998765  223344566653   3333322211 1123588999999996446654 999999999886541110


Q ss_pred             --EEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        155 --VSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       155 --~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                        ... .++   ..+.|.|..+..+|+|.|+|.|.|......
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence              000 111   134789999999999999999999876543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.90  E-value=3.3e-23  Score=149.04  Aligned_cols=181  Identities=17%  Similarity=0.286  Sum_probs=117.5

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECC--eee------------cCCCceEEEEeeeeceEEEEeec
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDG--RYL------------DNSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +.+.. +....+.+|++++|.|.+.+..+.+ .+.|+|++  ..+            ....++.... ......|.|.++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   98 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-SGTSASLAISGL   98 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-ETTEEEEEEESC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-cCCeEEEEECCC
Confidence            34444 6677899999999999985333334 79999863  221            0123443332 223568999999


Q ss_pred             CCCCCeeEEEEEEeCCCc---ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEe
Q psy11132         75 SARHSGNYSCTVRNMVAE---DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP  146 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~  146 (243)
                      +.+|+|.|+|.+.+..+.   ......|.|..    +|.+...... .....|+.+.|.|.+.+..|+ +.++|+++|..
T Consensus        99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L           99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            999999999999987762   22234455532    3333322211 122358899999999533454 49999999998


Q ss_pred             cCCCCCee--EEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        147 LSPRFPVN--VSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       147 ~~~~~~~~--~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      +.......  ....+   ...+.|.|..+..+|+|.|+|.|.|..+...+++
T Consensus       178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            86542110  00011   1236788999999999999999999887654443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.90  E-value=2e-23  Score=158.32  Aligned_cols=193  Identities=18%  Similarity=0.294  Sum_probs=136.1

Q ss_pred             eeEEEecCCCcc--CCCCCcccccCCeEEEEEEe----eCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeec
Q psy11132          2 LVIFSTVPPKLS--PTNPERTLNVGERASLICSI----TKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus         2 ~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~----~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +.|.|..+|...  .......+.+|+.+.|.|.+    ..+.|.+.+.|++++..+... .++...   .....|.|.++
T Consensus       111 ~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~---~~~~~L~i~~v  187 (339)
T 3o4o_C          111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV---RGTTHLLVHDV  187 (339)
T ss_dssp             EEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC---TTSSEEEESSC
T ss_pred             EEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc---CCcceEEEccc
Confidence            356666665542  12233468899999999993    247788899999999888654 232221   11358999999


Q ss_pred             CCCCCeeEEEEEEeCCCc----ceeEEEEEEEcCC-----CccccccCCCCCCCCCcEEEEEEee--cCCC-CCEEEEEe
Q psy11132         75 SARHSGNYSCTVRNMVAE----DTQVQRLIVNVPP-----KIESFAFPFDGLPEGARTRVICGVT--HGDP-PLTIRWLK  142 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~p-----~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p-~~~~~W~~  142 (243)
                      +.+|+|.|+|.+.|..+.    .+..+.|.|...+     .+... .....+..|+.+.|.|.+.  .|.| .+.+.|++
T Consensus       188 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~  266 (339)
T 3o4o_C          188 ALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP-LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA  266 (339)
T ss_dssp             CGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCC-SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEES
T ss_pred             CHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecC-CceeEeccCCCEEEEEEEECCCCCCCCceEEEEE
Confidence            999999999999998763    4566778877532     32222 2335678899999999983  4777 88999999


Q ss_pred             CCEecCCCCC---------eeEEeecc--ceeEEEEeecCCCCC-eeEEEEEEccCcceeeeEEEEEE
Q psy11132        143 DGKPLSPRFP---------VNVSDLDS--FSSLLSINSVSAAHS-GEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       143 ~~~~~~~~~~---------~~~~~~~~--~~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ++..+.....         ........  ..+.|.|.++..+|. |.|+|.|.|..|.....+.+.+.
T Consensus       267 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          267 NDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             SSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             CCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            9987653211         10100000  123799999999997 99999999999999888777654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.89  E-value=3.5e-23  Score=163.09  Aligned_cols=224  Identities=16%  Similarity=0.194  Sum_probs=132.3

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +|.+...+....+.+|+.++|.|.+.+..|. +.+.|++++..+...........+   ...+.|.|.+++.+| |.|+|
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C  210 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  210 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEE
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEE
Confidence            5555444434457899999999999754464 799999998654211000000000   113479999999999 99999


Q ss_pred             EEEeCCCcceeEEEEEEEc-----------------CCCccccccCCC-CCCCCCcEEEEEEeecCCCC----CEEEEEe
Q psy11132         85 TVRNMVAEDTQVQRLIVNV-----------------PPKIESFAFPFD-GLPEGARTRVICGVTHGDPP----LTIRWLK  142 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~-----------------~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~p~----~~~~W~~  142 (243)
                      .+.|..+.......+.+..                 +|.+...++... .+..|+.+.|.|.+. |.|+    +.+.|++
T Consensus       211 ~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~-g~~p~p~~~~i~W~k  289 (457)
T 1hzh_H          211 NVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV-DVSHEDPEVKFNWYV  289 (457)
T ss_dssp             EEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEE-CCCTTCCCCEEEEEE
T ss_pred             EEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEE-cccCCCCceEEEEEe
Confidence            9999776544333333221                 122211111111 156799999999995 6644    3999999


Q ss_pred             CCEecCCCCCeeEEeeccceeEEEEe---ecCCCC---CeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeec----
Q psy11132        143 DGKPLSPRFPVNVSDLDSFSSLLSIN---SVSAAH---SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF----  212 (243)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d---~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~----  212 (243)
                      ++..+............  .+.+.+.   .+...|   +|.|+|.|.|..+.......+.+.. ....+|.+.+.+    
T Consensus       290 ~~~~~~~~~~~~~~~~~--~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~  366 (457)
T 1hzh_H          290 DGVEVHNAKTKPREEQY--NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSRD  366 (457)
T ss_dssp             TTEEECCCEEEEEEECT--TSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCC-CCCBCCEEEEECCCGG
T ss_pred             CCccccccccccceecC--CCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEccc-CCCCCCeEEEECCCcc
Confidence            99887643221111111  1112222   233444   9999999998766543333332210 112456554432    


Q ss_pred             ---cceeeeccCcccc--c--ccceEEeCCee
Q psy11132        213 ---SQASYMSTSYYSF--E--QDSWMIDNENY  237 (243)
Q Consensus       213 ---~~~~~~~~~~~~~--~--~~~W~~~~~~~  237 (243)
                         +..+.+.|...++  +  .+.|++||..+
T Consensus       367 ~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~l  398 (457)
T 1hzh_H          367 ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  398 (457)
T ss_dssp             GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             ccCCCcEEEEEEEEeEECCCCEEEEEECCEEC
Confidence               3347899988765  2  79999998765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.89  E-value=2.5e-22  Score=143.04  Aligned_cols=175  Identities=19%  Similarity=0.256  Sum_probs=112.5

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec-----------------CCCceEEEEee-eeceEEEEeec
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD-----------------NSAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      ....+.+|++++|.|.+. +.+  .+.+.|+|+  +..+.                 ...++.+.... ....+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            8 GPELKKPGETVKISCKAS-GYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCEEECTTCCEEEEEEEE-SSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEEe-CcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            345688999999999996 443  578999986  33221                 12344333221 22468999999


Q ss_pred             CCCCCeeEEEEEEeCCCc----ceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCE
Q psy11132         75 SARHSGNYSCTVRNMVAE----DTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGK  145 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~  145 (243)
                      +.+|+|.|.|.+.+..+.    ......|.|...    |.+..... ...+..|+.+.|.|.+.++.|.+ .+.|++++.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence            999999999999987631    223456777653    32222222 23567899999999995338887 999999987


Q ss_pred             ecCCCCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        146 PLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       146 ~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      .+............  ...+.|.|.. ...|.|.|+|.|.|..+.......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             CTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTEEEEEE
T ss_pred             ccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCccEEEe
Confidence            64311000001111  1135688844 444669999999998876554443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.89  E-value=9.1e-23  Score=146.99  Aligned_cols=178  Identities=17%  Similarity=0.289  Sum_probs=118.5

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee------------cCCCceEEEEeeeeceEEEEeecC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL------------DNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      +.+...+....+.+|++++|.|.+. +.+.+.+.|+|++  ...            ....++... ......+|.|.+++
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~  102 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRAS-QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGTDFTLTISSLQ  102 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCC
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecC-CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-cCCCEEEEEECCCC
Confidence            3444446667899999999999995 6677899999842  110            112344433 22236789999999


Q ss_pred             CCCCeeEEEEEEeCCCc-ceeEEEEEEEcC---CCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCC
Q psy11132         76 ARHSGNYSCTVRNMVAE-DTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR  150 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  150 (243)
                      .+|+|.|+|.+.+..+. ......|.|...   |.+...... .....|+.+.|.|.+.++.| .+.+.|+++|..+...
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCC-hhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            99999999999876543 233445666442   322221111 22335889999999965466 6899999999988753


Q ss_pred             C-Ce-eEEe-ec---cceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        151 F-PV-NVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       151 ~-~~-~~~~-~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      . .. .... .+   ...+.|.|.....+|+|.|+|.|.|......
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            2 00 0000 01   1135688999989999999999999876543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.89  E-value=7.1e-23  Score=145.24  Aligned_cols=177  Identities=19%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee------------cCCCceEEEEeeeeceEEEEeecC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL------------DNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      |.+...+....+.+|++++|.|.+. +.+.+.+.|+|.+  ...            ....++.... .....+|.|.+++
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~   79 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQAS-QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-SGRDSSFTISSLE   79 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCC
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeC-CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec-cCCEEEEEECCCC
Confidence            3444445667799999999999995 6677899999832  111            0123444332 2235689999999


Q ss_pred             CCCCeeEEEEEEeCCCc-ceeEEEEEEE---cCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCC
Q psy11132         76 ARHSGNYSCTVRNMVAE-DTQVQRLIVN---VPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR  150 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  150 (243)
                      .+|+|.|+|.+.+..+. ......|.|.   .+|.+...+.. .....|+.+.|.|.+.++.| .+.+.|+++|..+...
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPS-SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCC-ceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            99999999999876542 3344566763   33443332222 23346888999999964444 4599999999988753


Q ss_pred             C-Ce-eEEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        151 F-PV-NVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       151 ~-~~-~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      . .. .... .++   ..+.|.|.....+|+|.|+|.|.|.....
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            1 11 0010 111   13467888888889999999999986543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.89  E-value=4.4e-22  Score=157.52  Aligned_cols=212  Identities=15%  Similarity=0.230  Sum_probs=130.2

Q ss_pred             cccCCeEEEEEEeeCCCCC-c-eeEEEECCeeecCCCceEEE--E--eeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-
Q psy11132         21 LNVGERASLICSITKGDIP-L-TIKWLKDGRYLDNSAALSIT--H--VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~-~v~W~~~~~~~~~~~~~~~~--~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   93 (243)
                      +.+|+.++|.|.+.+..|. + .+.|++++............  .  .-.....|.|......|.|.|+|.+.+..+.. 
T Consensus       138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  217 (475)
T 1iga_A          138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  217 (475)
T ss_pred             cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCce
Confidence            3689999999999744465 4 99999987532111000000  0  00113468888888899999999999987632 


Q ss_pred             eeEEEEEEEc------------------CCCccccccCCCCCCCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCC
Q psy11132         94 TQVQRLIVNV------------------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFP  152 (243)
Q Consensus        94 ~~~~~l~v~~------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~  152 (243)
                      ...+.+.|..                  +|.+...++....+..|+.+.|.|.+. |.++   +.+.| . +..+.....
T Consensus       218 ~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~-g~~p~~~~~i~W-~-~~~~~~~~~  294 (475)
T 1iga_A          218 DVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLT-GLRDASGVTFTW-T-PSSGKSAVQ  294 (475)
T ss_pred             eeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEE-cccCCCceEEEE-C-CCCcCCccc
Confidence            2233332311                  222211111112357899999999995 6543   69999 4 433332111


Q ss_pred             e-eEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee--------ccceeeecc
Q psy11132        153 V-NVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV--------FSQASYMST  220 (243)
Q Consensus       153 ~-~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~--------~~~~~~~~~  220 (243)
                      . ......   ...+.|.|.++..+|+|.|+|.|.|..|.......+.+.  ....+|.+.+.        .+..+.+.|
T Consensus       295 ~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~--~~~~~P~v~~~~~~~~~v~~g~~~~L~C  372 (475)
T 1iga_A          295 GPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKS--GNTFRPEVHLLPPPSEELALNELVTLTC  372 (475)
T ss_pred             cCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecC--CCCCCCeEEEECCChHHhccCCceEEEE
Confidence            1 000000   124679999999999999999999998876444444321  11256665433        345578999


Q ss_pred             Ccccc-c---ccceEEeCCee
Q psy11132        221 SYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       221 ~~~~~-~---~~~W~~~~~~~  237 (243)
                      ....+ |   .+.|++||+.+
T Consensus       373 ~~~g~~P~~~~v~W~k~g~~l  393 (475)
T 1iga_A          373 LARGFSPKDVLVRWLQGSQEL  393 (475)
T ss_pred             EEeeeECCCCEEEEEECCEEC
Confidence            88765 2   89999998765

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=8.6e-22  Score=142.80  Aligned_cols=178  Identities=15%  Similarity=0.208  Sum_probs=116.7

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--eee-----------------cCCCceEEEEe-eeeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYL-----------------DNSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.|  .+.+.|+|+.  ..+                 ....++.+... .....+|.|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAAS-GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEecCCcEEEEEEec-cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            46688999999999996 555  5689999842  111                 01234444332 1234689999999


Q ss_pred             CCCCeeEEEEEEeCCCc--ceeEEEEEEEcCCC-------------cccc-ccCCCCCCCCCcEEEEEEeecCCCCCEEE
Q psy11132         76 ARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPK-------------IESF-AFPFDGLPEGARTRVICGVTHGDPPLTIR  139 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~p~-------------~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  139 (243)
                      .+|+|.|+|.+.+..+.  ......|.|..++.             .... ......+.+|+++.|.|.+ .+.|.+.+.
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~v~  168 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA-SQSVRSNLA  168 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE-SSCCTTCEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe-CCCccceEE
Confidence            99999999999987222  23345677765421             1111 1122447799999999999 588888999


Q ss_pred             EEe--CCEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        140 WLK--DGKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       140 W~~--~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                      |++  ++..+.            ...+... ........|.|.+++.+|+|.|.|.|.|..+... ....|.|.
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSG-SGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEE-ECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEE-ecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999  554331            0111221 1123356799999999999999999998654332 34556665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=6.2e-22  Score=144.43  Aligned_cols=178  Identities=19%  Similarity=0.248  Sum_probs=116.4

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec----------------CCCceEEEEe-eeeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD----------------NSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~----------------~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|+  +..+.                ...++.+... .....+|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVS-GFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CSEECTTSEEEEEEEEE-SSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CccccCCceEEEEEEEe-cccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            34688999999999996 543  579999985  22110                1234443322 12346899999999


Q ss_pred             CCCeeEEEEEEeCCC-------c--ceeEEEEEEEcCCC-------------cccc-ccCCCCCCCCCcEEEEEEeecCC
Q psy11132         77 RHSGNYSCTVRNMVA-------E--DTQVQRLIVNVPPK-------------IESF-AFPFDGLPEGARTRVICGVTHGD  133 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~-------~--~~~~~~l~v~~~p~-------------~~~~-~~~~~~~~~g~~~~l~C~~~~~~  133 (243)
                      +|+|.|.|.+.+..+       .  ......|.|..++.             .... ......+.+|++++|.|.+ .+.
T Consensus        88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~  166 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG-SQN  166 (257)
T ss_dssp             TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC-SSC
T ss_pred             ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE-CCc
Confidence            999999999998753       1  12345677765431             1111 1222457899999999999 577


Q ss_pred             CCCEEEEEe--CCEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        134 PPLTIRWLK--DGKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       134 p~~~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +.+.+.|++  ++..+.            ...++... .......|.|.+++.+|+|.|.|.|.|..........|.|.
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~  244 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS-GSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK  244 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEe-cCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence            878999999  554331            01122221 12335689999999999999999999975222233455554

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.89  E-value=5.8e-24  Score=166.47  Aligned_cols=218  Identities=19%  Similarity=0.270  Sum_probs=137.5

Q ss_pred             CCcccccCCeEEEEEEeeCCC--CCceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEeec
Q psy11132         17 PERTLNVGERASLICSITKGD--IPLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDSV   74 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~   74 (243)
                      ....+.+|++++|.|.+. +.  +.+.+.|+|++  ..+.                 ...++.+... ......|.|.++
T Consensus         7 ~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            7 GAELARPGASVKMSCKAS-GYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCEECTBCCEEECCEEC-SSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCeEecCCCCEEEEEEcc-CCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            445688999999999995 43  35689999863  2210                 0123332221 122458999999


Q ss_pred             CCCCCeeEEEEEEeCCCcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCC
Q psy11132         75 SARHSGNYSCTVRNMVAEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSP  149 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~  149 (243)
                      +.+|+|.|+|.+.+..+.......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++..+..
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~  164 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  164 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSE
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCe
Confidence            99999999999988544444456777753    2333322222 3457899999999996444765 9999999875321


Q ss_pred             CCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe---------ecC-----CCCCeee--ee
Q psy11132        150 RFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG---------NLN-----RLPPSYT--LV  211 (243)
Q Consensus       150 ~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~---------~~~-----~~~p~~~--~~  211 (243)
                      ..........  ...+.|.|..+..+| |.|+|.|.|..|.......+.+.+         ...     ..||...  +.
T Consensus       165 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~  243 (434)
T 1igy_B          165 HTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL  243 (434)
T ss_dssp             EECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHS
T ss_pred             EecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcc
Confidence            0000000001  113568999988888 999999999988754443332210         000     0122222  44


Q ss_pred             ccceeeeccCccccc------ccceEEeCCee
Q psy11132        212 FSQASYMSTSYYSFE------QDSWMIDNENY  237 (243)
Q Consensus       212 ~~~~~~~~~~~~~~~------~~~W~~~~~~~  237 (243)
                      .++.+.+.|.....+      .+.|+++|..+
T Consensus       244 ~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~  275 (434)
T 1igy_B          244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV  275 (434)
T ss_dssp             TTSCCEEEEEECCCCSSCCCCCBCBBSSSCCB
T ss_pred             cCCCcEEEEEEeccccCCCCeEEEEEeCCccc
Confidence            577888999876662      79999998764

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=153.71  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=113.3

Q ss_pred             eEEEecCCCcc-CCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEee----eeceEEEEeecCC
Q psy11132          3 VIFSTVPPKLS-PTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSA   76 (243)
Q Consensus         3 ~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~   76 (243)
                      .|.|..+|... .......+.+|+.+.|.|.+.+..+++ .+.|+++|..+............    ...+.|.|.....
T Consensus       110 ~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  189 (327)
T 2wng_A          110 ELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTRE  189 (327)
T ss_dssp             EEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTT
T ss_pred             EEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhc
Confidence            56666655432 222346688999999999996443333 89999999988653321111000    1134677877777


Q ss_pred             CCCeeEEEEEEeCCCcc---eeEEEE--EEEcCCCccccccCCCCCCCCCcEEEEEEeecC-CCCC-EEEEEeCCEecCC
Q psy11132         77 RHSGNYSCTVRNMVAED---TQVQRL--IVNVPPKIESFAFPFDGLPEGARTRVICGVTHG-DPPL-TIRWLKDGKPLSP  149 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~---~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~-~~~W~~~~~~~~~  149 (243)
                      +|.|.|+|.+.|..+..   .....+  .+..+|.+......   +.+|+.+.|.|.+. | .|++ .+.|+++|..+..
T Consensus       190 d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~---~~~G~~v~l~C~~~-g~~p~~~~v~W~k~g~~l~~  265 (327)
T 2wng_A          190 DVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQVNVTCQVR-KFYPQRLQLTWLENGNVSRT  265 (327)
T ss_dssp             GGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC---CSSTTCCEEEEEEE-EEBSSCEEEEEEETTEEEEE
T ss_pred             CcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC---cCCCCcEEEEEEEc-cccCCCcEEEEEECCeEccC
Confidence            77899999999987652   223333  23445555443322   67899999999995 5 4544 8999999998754


Q ss_pred             CCCeeEEee-cc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        150 RFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       150 ~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ......... ++   ..+.|.|..+..+|+|.|+|.|.|..|..
T Consensus       266 ~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          266 ETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             cccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            211111111 11   12568888889999999999999998865

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=8e-24  Score=150.04  Aligned_cols=174  Identities=16%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +....+.+|++++|.|.+ .+.+.+.+.|+++  +..+.            ...++.... ......|.|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-SGTTATLTISGAQPEDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEETTCCGGGCSE
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-eCCEEEEEECcCCcccCEE
Confidence            455678999999999997 4666668999985  33221            123444332 2235689999999999999


Q ss_pred             EEEEEEeCCC-c--ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCe
Q psy11132         82 YSCTVRNMVA-E--DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        82 Y~C~~~~~~~-~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~  153 (243)
                      |+|.+.+... .  ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|+ +.+.|+++|..+......
T Consensus        84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  162 (212)
T 1nfd_E           84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT  162 (212)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred             EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence            9999997322 1  12334566643    2333222211 223468999999999644355 799999999987654221


Q ss_pred             eE--Eeecc--ceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        154 NV--SDLDS--FSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       154 ~~--~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..  ...+.  ..+.|.|.++..+|+|.|+|.|.|..+....+
T Consensus       163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (212)
T 1nfd_E          163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS  205 (212)
T ss_dssp             CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred             CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence            10  00111  13558899999999999999999988764433

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.89  E-value=1e-22  Score=145.21  Aligned_cols=178  Identities=17%  Similarity=0.222  Sum_probs=117.5

Q ss_pred             CcccccCCeEEEEEEeeCCCCCc---eeEEEECCeeecC----------------CCceEEE------EeeeeceEEEEe
Q psy11132         18 ERTLNVGERASLICSITKGDIPL---TIKWLKDGRYLDN----------------SAALSIT------HVDQYNSMLVID   72 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~---~v~W~~~~~~~~~----------------~~~~~~~------~~~~~~~~l~i~   72 (243)
                      ++.+.+|++++|.|.+. +.+.+   .+.|+|++..+..                ..+....      .......+|.|.
T Consensus        10 ~V~~~~G~~v~L~C~~~-~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLL-PPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             EEEEETTSCEEECCEEC-SSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             EEEEecCCCEEEEEEEE-CCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            45578899999999985 44443   5899997654311                0111110      011124679999


Q ss_pred             ecCCCCCeeEEEEEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC
Q psy11132         73 SVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  151 (243)
                      +++.+|+|.|+|.+.+..+.. .....+.+..+|........ .....++...+.|.+..+.|++.+.|++++..+....
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQE-VTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECC-BCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccc-eeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence            999999999999999876653 33445555555554433332 4556778888888877788999999998876443221


Q ss_pred             CeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        152 PVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       152 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      ........  ...+.|.|..+..+|+|.|+|.|.|..+....+..+.+
T Consensus       168 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          168 QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            11111101  11357999999999999999999999887655544443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.89  E-value=3.4e-23  Score=145.82  Aligned_cols=156  Identities=16%  Similarity=0.280  Sum_probs=106.5

Q ss_pred             cccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132         21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      +.+|++++|.|.+    +.+.+.|+|+|..+...        ......|.|.+++.+|+|.|+|.+.+..   +..+.|.
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~--------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~   79 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL--------TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVY   79 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEE--------ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEE
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCC--------CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEE
Confidence            4689999999987    56799999999877532        1125679999999999999999975422   2234444


Q ss_pred             EEc------C-------------------C---CccccccCCCCCC-CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC
Q psy11132        101 VNV------P-------------------P---KIESFAFPFDGLP-EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  151 (243)
Q Consensus       101 v~~------~-------------------p---~~~~~~~~~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  151 (243)
                      +..      .                   .   ...........+. +|+++.|.|.   +.|.+.+.|++++..+....
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~~  156 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP---QYPGSEILWQHNDKNIGGDE  156 (204)
T ss_dssp             EEC------------------------------------CCCCEEEEETTEEEEECS---CCCSSCEEEEETTEEESCCT
T ss_pred             EEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC---CCCCCceEEEECCEECCCcc
Confidence            430      0                   0   0000000112233 8999999996   67888999999999876432


Q ss_pred             C-eeEEeeccceeEEEEeec-CCCCCeeEEEEEEccCcce-eeeEEEEE
Q psy11132        152 P-VNVSDLDSFSSLLSINSV-SAAHSGEYTCVASNTAAQA-RYSSKLQV  197 (243)
Q Consensus       152 ~-~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~-~~~~~l~v  197 (243)
                      . .....   ....|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus       157 ~~~~~~~---~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          157 DDKNIGS---DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             TCTTEEE---ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             CCceEec---CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            1 11111   1468999999 9999999999999999963 34444544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.89  E-value=1.3e-21  Score=142.66  Aligned_cols=179  Identities=17%  Similarity=0.243  Sum_probs=119.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec-----------------CCCceEEEEe-eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD-----------------NSAALSITHV-DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.+  .+.+.|+|+  +..+.                 ...++.+... .....+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKAS-GYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEC-SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEec-cccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            3456688999999999985 544  569999984  22210                 1234443322 12346899999


Q ss_pred             cCCCCCeeEEEEEEeCCCc-----ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-----EEEEEe-
Q psy11132         74 VSARHSGNYSCTVRNMVAE-----DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-----TIRWLK-  142 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-----~~~W~~-  142 (243)
                      ++.+|+|.|.|.+.+..+.     ....+.|.|..++.+...+ ....+.+|++++|.|.+ .+.|++     .+.|++ 
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p-~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTP-LSLPVSLGDQASISCRS-SQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEEC-SEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecC-cEEEEecCCcEEEEeEe-cCcccccccceEEEEEEE
Confidence            9999999999999987552     2234567776555443322 22457899999999999 576654     999999 


Q ss_pred             -CCEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132        143 -DGKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  198 (243)
Q Consensus       143 -~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~  198 (243)
                       ++..+.            ...+.... .......|.|.+++.+|+|.|.|.|.|..... .....|.|.
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGS-GSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEE-ccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence             554331            01122221 22335689999999999999999999864432 234566666

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.89  E-value=1.4e-24  Score=169.88  Aligned_cols=226  Identities=13%  Similarity=0.178  Sum_probs=139.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEE--eeeeceEEEEeecCCCCCeeEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITH--VDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +|.+........+.+|+.++|.|.+.+..|.+ .+.|++++..+..........  .-...+.|.|.+++.+| |.|+|.
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~  197 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCN  197 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEE
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEE
Confidence            45554333333467899999999997444665 999999987532100000000  00113579999999889 999999


Q ss_pred             EEeCCCcceeEEEEEEEc---------C---CCccccccCCCC-CCCCCcEEEEEEeecCCC----CCEEEEEeCCEecC
Q psy11132         86 VRNMVAEDTQVQRLIVNV---------P---PKIESFAFPFDG-LPEGARTRVICGVTHGDP----PLTIRWLKDGKPLS  148 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~---------~---p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~  148 (243)
                      +.|..+.......+.+..         .   |.+...++.... +..|+.+.|.|.+. |.+    .+.+.|++++..+.
T Consensus       198 a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~~~  276 (434)
T 1igy_B          198 VAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVEVH  276 (434)
T ss_dssp             EECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCCBC
T ss_pred             EEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcccC
Confidence            999888754444333221         0   222222111011 67899999999995 663    45899999998765


Q ss_pred             CCCCeeEE-eec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee-------ccceee
Q psy11132        149 PRFPVNVS-DLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV-------FSQASY  217 (243)
Q Consensus       149 ~~~~~~~~-~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~  217 (243)
                      ........ ..+   ...+.|.|..+..+|+|.|+|.|.|..|.......+.+.. ....+|.+.+.       .++.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~~~~  355 (434)
T 1igy_B          277 TAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTK-GKPRAPQVYTIPPPKEQMAKDKVS  355 (434)
T ss_dssp             CCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCC-SCCBCCCCEEECCCSSSSSSSEEE
T ss_pred             CcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccC-CCCcCCEEEEECCCHHHhcCCcEE
Confidence            33211111 001   1235689999999999999999999988653322222100 01145554432       245688


Q ss_pred             eccCcccc-c---ccceEEeCCee
Q psy11132        218 MSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       218 ~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      +.|...++ |   .++|++||..+
T Consensus       356 L~C~~~g~~P~~~~v~W~k~g~~l  379 (434)
T 1igy_B          356 LTCMITDFFPEDITVEWQSDGQAP  379 (434)
T ss_dssp             EEEEEEEEBCSCEEEEEEETTSCC
T ss_pred             EEEEEEeeECCCeEEEEEECCEec
Confidence            99988764 2   79999999764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=145.39  Aligned_cols=169  Identities=15%  Similarity=0.185  Sum_probs=117.2

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQ   97 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~   97 (243)
                      ..+.+|+.+.|.|.+.  .|.+.+.|++++.........  .  . ... +.    ...|+|.|+|.+.+..+. .+..+
T Consensus       105 ~~v~~G~~v~l~C~~~--~p~~~v~w~~~~~~~~~~~~~--~--~-~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~  172 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT--DPQLVVTLHEKKGDVALPVPY--D--H-QRG-FS----GIFEDRSYICKTTIGDREVDSDAY  172 (289)
T ss_dssp             EEESSCCCEEECCCBS--CTTSCEEEEESSCCSCCCCCE--E--T-TTE-EE----ECCCSSEEEEEEEETTEEEECCCE
T ss_pred             EEeecCCeEEEEeEcC--CCCceEEEEeCCCCCccceee--c--C-CcC-ee----eeccCcEEEEEEEeCCceeeeeeE
Confidence            5688999999999984  556688898865221111110  0  0 011 11    357999999999976654 34445


Q ss_pred             EEEEEc--CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee----ccceeEEEEeecC
Q psy11132         98 RLIVNV--PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVS  171 (243)
Q Consensus        98 ~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~  171 (243)
                      .+.+..  +|.+...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..............    ....+.|.|.++.
T Consensus       173 ~l~v~~~~~p~i~~~~~~-~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  250 (289)
T 3mjg_X          173 YVYRLQVSSINVSVNAVQ-TVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE  250 (289)
T ss_dssp             EEEECCCCCCCCEEEESC-SEEETTSCEEEEEEE-ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCC
T ss_pred             EEEecCCCCCCcEEeCCc-ceeEcCCCEEEEEEE-CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccC
Confidence            666665  4444433332 557789999999999 5899999999988765543222111111    2235789999999


Q ss_pred             CCCCeeEEEEEEccCcceeeeEEEEEEeec
Q psy11132        172 AAHSGEYTCVASNTAAQARYSSKLQVKGNL  201 (243)
Q Consensus       172 ~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~  201 (243)
                      .+|+|.|+|.|.|..|....++.|.|.+.+
T Consensus       251 ~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          251 LEDSGTYTCNVTESVNDHQDEKAINITVVE  280 (289)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             hhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence            999999999999999999999999998543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.89  E-value=6.2e-22  Score=165.23  Aligned_cols=217  Identities=13%  Similarity=0.114  Sum_probs=119.4

Q ss_pred             CCcccccC--CeEEEEEEeeCCCCCceeEEEEC--CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         17 PERTLNVG--ERASLICSITKGDIPLTIKWLKD--GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        17 ~~~~~~~g--~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ....+.+|  +.++|.|.+. + |.+.+.|+++  +..+.........   .....|.|.+++.+|.|.|+|.+.+....
T Consensus       134 ~~~~v~~G~~~~v~L~C~~~-~-p~~~v~w~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  208 (772)
T 3v2a_R          134 GVVYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISW---DSKKGFTIPSYMISYAGMVFCEAKINDES  208 (772)
T ss_dssp             EEEEEESSCCCEEEECCCCS-C-SSCCEEEEEETTTEEECCCSSSCEE---ETTTEEEEEGGGTTTCSEEEEEEEETTEE
T ss_pred             eeEEEecCCCCeEEEEccCC-C-CCcEEEEEecCCCccccCCCceeec---CCCCCeEecCCChhhCeEEEEEEEECCce
Confidence            45667889  8999999984 3 6679999997  6665443322111   12567999999999999999999975443


Q ss_pred             c-eeEEEEEEEcCCCc--cccccCCCCCCCCCcEEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeEE-------eeccc
Q psy11132         93 D-TQVQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVS-------DLDSF  161 (243)
Q Consensus        93 ~-~~~~~l~v~~~p~~--~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~-------~~~~~  161 (243)
                      . +..+.+.+...+..  ...+.....+.+|+.+.|.|.+... .+.+.+.|++++..+.........       .....
T Consensus       209 ~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (772)
T 3v2a_R          209 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF  288 (772)
T ss_dssp             EECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEE
T ss_pred             EEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEE
Confidence            2 22344444433222  2222222357789999999999532 456799999998876543222111       11223


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCC-----CCCeeeeeccceeeeccCcccc--cccceEEeC
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR-----LPPSYTLVFSQASYMSTSYYSF--EQDSWMIDN  234 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~  234 (243)
                      .+.|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+..     .++...+..++.+.+.|.....  +.+.|+++|
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g  368 (772)
T 3v2a_R          289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG  368 (772)
T ss_dssp             EEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC---------------------------------------
T ss_pred             EEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECC
Confidence            578999999999999999999999998888888888742211     0122345567788899987665  489999998


Q ss_pred             CeeE
Q psy11132        235 ENYV  238 (243)
Q Consensus       235 ~~~~  238 (243)
                      ..+.
T Consensus       369 ~~l~  372 (772)
T 3v2a_R          369 IPLE  372 (772)
T ss_dssp             ----
T ss_pred             EeCC
Confidence            7653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.89  E-value=4.7e-22  Score=143.38  Aligned_cols=169  Identities=15%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee---------------cCCCceEEEEeeeeceEEEEeecCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL---------------DNSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      ..+..+.+.+|++++|.|. . +.+.+.+.|+|+  +..+               ....++.+........+|.|.+++.
T Consensus         5 q~p~~~~v~~G~~v~L~C~-~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   82 (238)
T 2p1y_A            5 QSPRNKVAVTGGKVTLSCN-Q-TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP   82 (238)
T ss_dssp             EECSEEEEETTCCEEEEEE-E-CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred             ECccceEEeCCCEEEEEee-c-CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence            3355677899999999999 3 667789999995  2111               0123444333223356899999999


Q ss_pred             CCCeeEEEEEEeCCCc-----ceeEEEEEEEcCCC------------ccccccCCCCCCCCCcEEEEEEeecCCCCCEEE
Q psy11132         77 RHSGNYSCTVRNMVAE-----DTQVQRLIVNVPPK------------IESFAFPFDGLPEGARTRVICGVTHGDPPLTIR  139 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~p~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  139 (243)
                      +|+|.|.|.+.+..+.     ......|.|...+.            +... .....+.+|+++.|.|.+ .+.|.+.+.
T Consensus        83 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~~-~~~p~~~i~  160 (238)
T 2p1y_A           83 SQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQS-PQSLTVWEGETAILNCSY-ENSAFDYFP  160 (238)
T ss_dssp             GGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEE-CSEEEEETTSCEEEEEEC-CCTTCCEEE
T ss_pred             ccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEcc-CceEEEeCCCeEEEEEEE-ecCCCCcEE
Confidence            9999999999987542     12345677765442            1111 222456789999999999 588889999


Q ss_pred             EEeCCE--ecC------------CCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        140 WLKDGK--PLS------------PRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       140 W~~~~~--~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      |++++.  ...            ...+..... .......|.|.+++.+|+|.|.|.|.|..
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            998642  100            011111111 12234689999999999999999999974

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.88  E-value=1.5e-22  Score=146.79  Aligned_cols=178  Identities=18%  Similarity=0.240  Sum_probs=116.5

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE----------------CCeeecCC---CceEEEEeeeeceEEEEe
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLK----------------DGRYLDNS---AALSITHVDQYNSMLVID   72 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~l~i~   72 (243)
                      +...+..+.+.+|++++|.|.+. +.+.+.+.|+|                ++......   .++.+........+|.|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSL-DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEES-SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             cEECCcEEEEeCCCcEEEEeEec-CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            34445567789999999999985 66778999998                22222221   344444333335689999


Q ss_pred             ecCCCCCeeEEEEEEeCCC----cceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEE
Q psy11132         73 SVSARHSGNYSCTVRNMVA----EDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWL  141 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~  141 (243)
                      +++.+|+|.|.|.+.+..+    .......|.|..      +|.+.........+..|+.+.|.|.+.+..|++ .+.|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence            9999999999999987543    122345677764      233322222212344599999999995334433 89999


Q ss_pred             eCCEecCCCCCeeEEe-------ecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        142 KDGKPLSPRFPVNVSD-------LDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       142 ~~~~~~~~~~~~~~~~-------~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      ++|..+..........       .++   ..+.|.|.....+| .|.|+|.|.|......
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            9999887542211100       011   12458888887778 9999999999876554

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.88  E-value=3.8e-22  Score=137.47  Aligned_cols=157  Identities=17%  Similarity=0.250  Sum_probs=111.1

Q ss_pred             CCcccccCCeEEEEEEeeC-CCCCceeEEEE--CCeeec----------CCCceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132         17 PERTLNVGERASLICSITK-GDIPLTIKWLK--DGRYLD----------NSAALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      ..+...+|++++|.|.... +.+.+.|.|++  ++..+.          ...+..+.    .+++|.|.+++++|+|.|+
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~ngsL~I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----KNGTLKIKHLKTDDQDIYK   82 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----TTSCEEECSCCGGGCEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----CCCCEEECCCChhhCEEEE
Confidence            4566889999999995421 34567999999  887662          23343332    2568999999999999999


Q ss_pred             EEEEeCCCcc--eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132         84 CTVRNMVAED--TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF  161 (243)
Q Consensus        84 C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  161 (243)
                      |.+.+..+..  ...+.|.|..+...+....      .+..+.|.|.+ .+.|.+.+.|+++|..+ ..     .     
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~------~~~~v~L~C~~-~~~p~~~~~W~~~g~~l-~~-----~-----  144 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQERVSKPKISW------TCINTTLTCEV-MNGTDPELNLYQDGKHL-KL-----S-----  144 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECCCCCCEEEE------ETTTTEEEEEC-SSCSSCEEEEEESSCEE-EE-----E-----
T ss_pred             EEEEeCCCceeEEEEEEEEEcCcCCCCEEEE------ccCcEEEEeEc-cCCCCCEEEEEECCEEC-CC-----C-----
Confidence            9999987764  3566788876432221111      23368999999 57788999999999877 11     0     


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      ...+.+.. ..+|+|.|+|.|.|..|.......+.
T Consensus       145 ~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          145 QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             CcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            12233332 47899999999999999887766553

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.88  E-value=1.9e-21  Score=141.76  Aligned_cols=184  Identities=16%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee-------------cCCCceEEE-EeeeeceEEEEeec
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL-------------DNSAALSIT-HVDQYNSMLVIDSV   74 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~-------------~~~~~~~~~-~~~~~~~~l~i~~~   74 (243)
                      .+...+....+.+|++++|.|.+. +.+.+.+.|+|..  ...             ....++... .......+|.|.++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYS-YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             EEEecCceEEecCCCeEEEEEEeC-CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            344555667899999999999996 6688899999832  110             112233332 11223568999999


Q ss_pred             CCCCCeeEEEEEEeCCCc----ceeEEEEEEEc--------------------CCCccccccCCCCCCCCCcEEEEEEee
Q psy11132         75 SARHSGNYSCTVRNMVAE----DTQVQRLIVNV--------------------PPKIESFAFPFDGLPEGARTRVICGVT  130 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~  130 (243)
                      +.+|+|.|.|.+.+..+.    ......|.|..                    +|.+...+ ....+.+|++++|.|.+.
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~~  162 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP-RNKVTVTGENVTLSCRQT  162 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC-SEEEEETTCCEEECEEEC
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC-CEEEEeCCCcEEEEEEcC
Confidence            999999999999986542    22334666664                    12222211 113456899999999994


Q ss_pred             cCCCCCEEEEEeCCEecC-----------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee--e
Q psy11132        131 HGDPPLTIRWLKDGKPLS-----------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR--Y  191 (243)
Q Consensus       131 ~~~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~  191 (243)
                       +. .+.+.|++......                 ...++...........|.|.+++.+|+|.|.|.|.|..|...  .
T Consensus       163 -~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~  240 (256)
T 3tf7_C          163 -NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGE  240 (256)
T ss_dssp             -SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECC
T ss_pred             -CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECC
Confidence             55 67999998321100                 011111111123356899999999999999999999877543  2


Q ss_pred             eEEEEEE
Q psy11132        192 SSKLQVK  198 (243)
Q Consensus       192 ~~~l~v~  198 (243)
                      ...|.|.
T Consensus       241 gt~l~v~  247 (256)
T 3tf7_C          241 GSKLTVL  247 (256)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            3455555

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.88  E-value=6.5e-22  Score=141.19  Aligned_cols=174  Identities=18%  Similarity=0.241  Sum_probs=113.7

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-------------------CCCceEEEEee-eeceEEEEee
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-------------------NSAALSITHVD-QYNSMLVIDS   73 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-------------------~~~~~~~~~~~-~~~~~l~i~~   73 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|+.  ....                   ...++.+.... ....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATS-GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             ceeEcCCCEEEEEEEec-CccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            44688999999999996 443  5689999853  2110                   01344433221 2246899999


Q ss_pred             cCCCCCeeEEEEEEeCCC-----cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeC
Q psy11132         74 VSARHSGNYSCTVRNMVA-----EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKD  143 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~  143 (243)
                      ++.+|+|.|.|.+.+..+     .......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|+++
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  166 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  166 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence            999999999999988653     222345666664    2333222222 3456899999999996435877 9999999


Q ss_pred             CEecCCCCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        144 GKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       144 ~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      |..+...........+  ...+.|.|..+..+| |.|+|.|.|..|.......
T Consensus       167 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          167 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             TBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            8765421111111111  113568899888889 9999999999887654443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.88  E-value=5.2e-22  Score=136.87  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=109.3

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEEC-Ceeec------------CC--CceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLD------------NS--AALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~------------~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ..+.+.+|++++|.|.+....+.+.|.|+++ +..+.            ..  .+..+   ...+.+|.|.+++.+|+|.
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l---~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL---DKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE---CTTTCCEEECSCCGGGCEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE---eCCCccEEEcCCCHHHCeE
Confidence            4567899999999999743334679999994 32221            11  22222   1235789999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF  161 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  161 (243)
                      |+|.+.+.. .....+.|.|..++..+...      ..+..+.|.|.+..+ |.+.+.|++++..+..          ..
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~------~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----------~~  145 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEMVSKPMIY------WECSNATLTCEVLEG-TDVELKLYQGKEHLRS----------LR  145 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECCCCCCEEE------EEGGGTEEEEECSSC-TTCEEEEEETTEEEEE----------ES
T ss_pred             EEEEEEcCC-eEEEEEEEEEECCCCCCEEE------ecCCCEEEEEEeCCC-CCCEEEEEECCeECcC----------CC
Confidence            999998765 55667788887654332221      134669999999545 8999999999987751          01


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      ...+.+..  .+|+|.|+|.|.|..+.......+
T Consensus       146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          146 QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             SSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence            23455532  789999999999999877655443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.88  E-value=9.6e-22  Score=139.13  Aligned_cols=171  Identities=21%  Similarity=0.272  Sum_probs=111.6

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+. +.+  .+.+.|+|+  +....                ...++.+.... ....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVT-GDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             SCSEECTTSCEEEEEEEE-SSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEecCCCcEEEEEEEe-cccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            345688999999999996 443  368999985  22211                12344443321 124689999999


Q ss_pred             CCCCeeEEEEEEeCCCcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCC
Q psy11132         76 ARHSGNYSCTVRNMVAEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR  150 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~  150 (243)
                      .+|+|.|.|.+.+.. .......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++..+...
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  164 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  164 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence            999999999998753 222335666653    2333222222 4467899999999996444777 99999998764311


Q ss_pred             CCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        151 FPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       151 ~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      .........  ...+.|.|..+..+| |.|+|.|.|..|....
T Consensus       165 ~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          165 TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             ECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             EcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            111111111  124568898888867 9999999999887643

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.88  E-value=2.7e-22  Score=145.89  Aligned_cols=177  Identities=20%  Similarity=0.290  Sum_probs=116.4

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCC-----CceeEEEECCe--ee---c---------CCCceEEEEeeeeceEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDI-----PLTIKWLKDGR--YL---D---------NSAALSITHVDQYNSMLV   70 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~l~   70 (243)
                      +.+...+....+.+|++++|.|.+. +.+     .+.+.|+|++.  .+   .         ...++.... .....+|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~  112 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSS-QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-SGTDFTLR  112 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEE
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcC-CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-cCCEEEEE
Confidence            4444446677899999999999995 555     57999999641  11   0         123443332 22346899


Q ss_pred             EeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCE
Q psy11132         71 IDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGK  145 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~  145 (243)
                      |.+++.+|+|.|.|.+.+..+. ......|.|..   +|.+...... ..+..|+.+.|.|.+.+..|+ +.+.|+++|.
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence            9999999999999999876543 22334566654   2333322211 123368999999999644565 4899999999


Q ss_pred             ecCCC-CCe-eEE-eec---cceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        146 PLSPR-FPV-NVS-DLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       146 ~~~~~-~~~-~~~-~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+... ... ... ..+   ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            87654 110 000 011   113568999999999999999999976553

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.88  E-value=4e-21  Score=139.57  Aligned_cols=172  Identities=17%  Similarity=0.272  Sum_probs=112.6

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe-----ee---------cCCCceEEEEeeeeceEEEEeecC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR-----YL---------DNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      +.+...+..+.+.+|++++|.|.+. +.+.+.+.|+|+..     .+         ....++.... .....+|.|.+++
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~   82 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRAS-QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-SGTDYSLTISNLE   82 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCC
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEec-ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-CCCEEEEEEccCC
Confidence            3445556667789999999999995 67777999998531     10         1123343222 2234689999999


Q ss_pred             CCCCeeEEEEEEeCCCc-ceeEEEEEEEcCC------------------CccccccCCCCCCCCCcEEEEEEeecCCC--
Q psy11132         76 ARHSGNYSCTVRNMVAE-DTQVQRLIVNVPP------------------KIESFAFPFDGLPEGARTRVICGVTHGDP--  134 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--  134 (243)
                      .+|+|.|.|.+.+..+. ......|.|..++                  ...........+.+|+++.|.|.+ .+.+  
T Consensus        83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~  161 (250)
T 3esu_F           83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SGYAFS  161 (250)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CSTTGG
T ss_pred             hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cCCccc
Confidence            99999999999876553 2233456665431                  111111222457789999999999 4666  


Q ss_pred             CCEEEEEeC--CEecCC-----------------CCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        135 PLTIRWLKD--GKPLSP-----------------RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       135 ~~~~~W~~~--~~~~~~-----------------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      .+.+.|+++  +..+..                 ..++..... ......|.|.+++.+|+|.|.|.|.+
T Consensus       162 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          162 SSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             GSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            789999987  332210                 012222211 13346799999999999999999997

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.88  E-value=6.3e-21  Score=140.50  Aligned_cols=187  Identities=17%  Similarity=0.243  Sum_probs=121.2

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe-----eec---------CCCceEEEEeeeeceEEEEeec
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR-----YLD---------NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      .+.+...+....+.+|++++|.|.+. +.+.+.+.|+|++.     .+.         ...++.... .....+|.|.++
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~-~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   89 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRAS-QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-SGTDFTLTISSL   89 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSC
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcC-CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-cCCeEEEEEccC
Confidence            34555556777899999999999995 66778999998642     111         123444332 223468999999


Q ss_pred             CCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCC-------------ccccccCCCCCCCCCcEEEEEEeecCCC--CCEE
Q psy11132         75 SARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPK-------------IESFAFPFDGLPEGARTRVICGVTHGDP--PLTI  138 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~  138 (243)
                      +.+|+|.|.|.+.+..+. ......|.|..+|.             +.........+.+|+++.|.|.+. +.+  .+.+
T Consensus        90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~-g~~~~~~~v  168 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTISDYWI  168 (276)
T ss_dssp             CGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGGSEE
T ss_pred             ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEec-CccCCCCEE
Confidence            999999999999986543 23345666665432             222222235678899999999994 655  5899


Q ss_pred             EEEeCC--Eec-----------------CCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccC---cce--eeeE
Q psy11132        139 RWLKDG--KPL-----------------SPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA---AQA--RYSS  193 (243)
Q Consensus       139 ~W~~~~--~~~-----------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~---g~~--~~~~  193 (243)
                      .|++++  ..+                 ....++..... ......|.|.+++.+|+|.|.|.|.|..   +..  ....
T Consensus       169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt  248 (276)
T 3auv_A          169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGT  248 (276)
T ss_dssp             EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCE
T ss_pred             EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCE
Confidence            999863  111                 01112222221 1234689999999999999999999973   221  2335


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus       249 ~l~V~  253 (276)
T 3auv_A          249 LVTVS  253 (276)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66665

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.87  E-value=4.1e-22  Score=141.79  Aligned_cols=180  Identities=13%  Similarity=0.187  Sum_probs=113.6

Q ss_pred             cCCCccCCCCCcc--cccCCeEEEEEEeeCCC--C-CceeEEEECCeeecCCCceEEEEe----eeeceEEEEeecCCCC
Q psy11132          8 VPPKLSPTNPERT--LNVGERASLICSITKGD--I-PLTIKWLKDGRYLDNSAALSITHV----DQYNSMLVIDSVSARH   78 (243)
Q Consensus         8 ~~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d   78 (243)
                      .+|.+...+....  +.+|++++|.|.+.+..  + .+.+.|+|++..+...........    -.....|.|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            4566655555544  78999999999997432  3 379999999987654321111000    0124579999999999


Q ss_pred             CeeEEEEEEeCCCcc--eeEEEE--EEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCe
Q psy11132         79 SGNYSCTVRNMVAED--TQVQRL--IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~--~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~  153 (243)
                      +|.|+|.+.+..+..  ...+.+  .+..+|.+...+.. .....|+.+.|.|.+.+.+|++ .+.|+++|..+......
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  166 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP-AEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT  166 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC-GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC-hHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceec
Confidence            999999999876643  222211  33445555443332 2223599999999995336754 99999999987532111


Q ss_pred             eEE-eecc---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        154 NVS-DLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       154 ~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ... ..++   ..+.|.+.....+|.|.|+|.|.|....
T Consensus       167 ~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            111 1111   1234555555555689999999998754

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.87  E-value=4.3e-22  Score=146.16  Aligned_cols=179  Identities=18%  Similarity=0.260  Sum_probs=116.0

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCC----CceEEEEeeeeceEEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNS----AALSITHVDQYNSMLVI   71 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~----~~~~~~~~~~~~~~l~i   71 (243)
                      +.+...+....+.+|++++|.|.+.  .+.+.+.|+|.  +...            ...    .++.+........+|.|
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI--SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB--TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC--CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            4555556678899999999999984  46679999982  2211            111    34444332233678999


Q ss_pred             eecCCCCCeeEEEEEEeC--CCcceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEe
Q psy11132         72 DSVSARHSGNYSCTVRNM--VAEDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLK  142 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~--~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~  142 (243)
                      .+++.+|+|.|.|.+.+.  .........|.|..      +|.+.........+..|+.++|.|.+.+..|++ .+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999974  22333445677765      333322222212344589999999996435544 899999


Q ss_pred             CCEecCCCCCeeEE-------eecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        143 DGKPLSPRFPVNVS-------DLDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       143 ~~~~~~~~~~~~~~-------~~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      +|..+.........       ..++   ..+.|.+.....+| +|.|+|.|.|......
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~  243 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  243 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence            99888653211100       0011   12557787777777 9999999999876543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=2.2e-21  Score=140.07  Aligned_cols=170  Identities=16%  Similarity=0.244  Sum_probs=113.7

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCC----CceeEEEECC--eee---c---------CCCceEEEEeeeeceEEEEeec
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDI----PLTIKWLKDG--RYL---D---------NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      ...+....+.+|++++|.|.+. +.+    .+.+.|+|++  ..+   .         ...++.+.. .....+|.|.++
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   82 (240)
T 1moe_A            5 TQSPASLAVSLGQRATMSCRAG-ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPV   82 (240)
T ss_dssp             EEECSEEEECTTSCEEEEEEES-SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSC
T ss_pred             EeeCCeEEecCCCCEEEEEeCC-CccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cCCeEEEEEcCC
Confidence            3345566789999999999995 655    6799999952  211   0         123444432 223458999999


Q ss_pred             CCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCC-----ccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeC--C
Q psy11132         75 SARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPK-----IESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKD--G  144 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~  144 (243)
                      +.+|+|.|+|.+.+..+. ......|.|..++.     +.........+.+|+++.|.|.+. +.|  .+.+.|+++  +
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~~~g  161 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTAS-GFNIKDTYMHWVKQRPE  161 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTT
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEc-CccCCCCEEEEEEECCC
Confidence            999999999999987554 34456777766432     222222234578899999999994 665  469999995  2


Q ss_pred             EecC-----------------CCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        145 KPLS-----------------PRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       145 ~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+.                 ...+...... ......|.|.+++.+|+|.|.|.|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            2210                 0111222211 133467999999999999999999853

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.87  E-value=2.3e-21  Score=141.08  Aligned_cols=180  Identities=18%  Similarity=0.222  Sum_probs=117.4

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec-----------------CCCceEEEEee-eeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD-----------------NSAALSITHVD-QYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.+  .+.+.|+|.  +..+.                 ...++.+.... ....+|.|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTAS-GFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             CCCEEECTTCCEEEEEEEC-SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEee-CCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            4566788999999999985 433  568999982  21110                 11334333221 2245799999


Q ss_pred             cCCCCCeeEEEEEEeCCCcc-eeEEEEEEEcC---------------CCccccccCCCCCCCCCcEEEEEEeecCCCCC-
Q psy11132         74 VSARHSGNYSCTVRNMVAED-TQVQRLIVNVP---------------PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-  136 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  136 (243)
                      ++.+|+|.|.|.+.+..+.. .....|.|...               +.+...+ ....+.+|+++.|.|.+ .+.+.+ 
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~-~~~~~~~  164 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP-ASLAVSLGQRATISCRA-SENVDRY  164 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC-SEEEECTTSCEEEEEEE-SSCCEET
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC-CeEEEeCCCCEEEEEEe-cCccccC
Confidence            99999999999998855442 34556676642               2222221 22457889999999999 577765 


Q ss_pred             ---EEEEEeCC--EecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        137 ---TIRWLKDG--KPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       137 ---~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                         .+.|++++  ....            ...+... ........|.|.+++.+|+|.|.|.|.|..+... ....|.|.
T Consensus       165 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          165 GNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSG-SGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-EEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEccccCCccCCceEE-eCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence               89999842  2111            0111221 1223356799999999999999999999765443 34667776


Q ss_pred             e
Q psy11132        199 G  199 (243)
Q Consensus       199 ~  199 (243)
                      +
T Consensus       244 ~  244 (253)
T 3uzq_A          244 R  244 (253)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.87  E-value=3.3e-21  Score=140.52  Aligned_cols=177  Identities=13%  Similarity=0.158  Sum_probs=116.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--eeec-----------------CCCceEEEEee-eece
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RYLD-----------------NSAALSITHVD-QYNS   67 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~-~~~~   67 (243)
                      +|.+...+..+.+.+|++++|.|.+.+. .+.+.+.|+|..  ..+.                 ...++.+.... ....
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            4566666778889999999999999642 256689999742  1110                 01244433211 2246


Q ss_pred             EEEEeecCCCCCeeEEEEEEeC------------CCcceeEEEEEEEcCCC--------------ccccccCCCCCCCCC
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNM------------VAEDTQVQRLIVNVPPK--------------IESFAFPFDGLPEGA  121 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~~g~  121 (243)
                      +|+|.+++.+|+|.|.|.+.+.            .........|.|...+.              ..........+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            7999999999999999999886            22233455677765422              111112224578899


Q ss_pred             cEEEEEEeecCCCC-CEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        122 RTRVICGVTHGDPP-LTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       122 ~~~l~C~~~~~~p~-~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      +++|.|.+ .+.+. +.+.|++.  +..+.            ...+.... .......|.|.+++.+|+|.|.|.|.|..
T Consensus       166 ~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          166 RATFSCRS-SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS-GSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CEEEEEEE-SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CEEEEEEE-CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE-ccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            99999999 46665 89999983  22111            11122221 22335679999999999999999999865


Q ss_pred             c
Q psy11132        187 A  187 (243)
Q Consensus       187 g  187 (243)
                      +
T Consensus       244 ~  244 (256)
T 3juy_B          244 S  244 (256)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.87  E-value=8.3e-21  Score=137.22  Aligned_cols=184  Identities=16%  Similarity=0.217  Sum_probs=116.7

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---ec--------------CCCceEEEEee-eeceEEE
Q psy11132         12 LSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---LD--------------NSAALSITHVD-QYNSMLV   70 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~-~~~~~l~   70 (243)
                      +...+..+.+.+|++++|.|.+... .+.+.+.|+|+.  ..   +.              ...++.+.... ....+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            4445666779999999999999642 155689999843  21   10              12344433221 1357899


Q ss_pred             EeecCCCCCeeEEEEEEeCCC-----c--ceeEEEEEEEcC-------CCccccccCCCCCCCCCcEEEEEEeecCCCC-
Q psy11132         71 IDSVSARHSGNYSCTVRNMVA-----E--DTQVQRLIVNVP-------PKIESFAFPFDGLPEGARTRVICGVTHGDPP-  135 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-  135 (243)
                      |.+++.+|+|.|.|.+.+...     .  ......|.|...       |.+.........+..|+.+.|.|.+.+..|. 
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~  163 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDV  163 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCC
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCC
Confidence            999999999999999987531     1  123457777753       3222222221334579999999999644464 


Q ss_pred             CEEEEEeCCE-ecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        136 LTIRWLKDGK-PLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       136 ~~~~W~~~~~-~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.+.|++++. .+...........++   ..+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus       164 ~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          164 IKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             eEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            7999999987 554321100111111   135678876654 4 9999999999887665555544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.87  E-value=1.6e-20  Score=131.02  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=114.1

Q ss_pred             cccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         19 RTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      +.+.+|++++|.|.+  +.|.+  .|.|++.+..+   .+...   ......|.|.+++.+|+|.|.|.+.+..+.....
T Consensus        17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l---~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~   88 (210)
T 1gsm_A           17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL---GAVQS---DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   88 (210)
T ss_dssp             EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT---CCEEE---ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc---CcEEe---cCCccEEEECccCcccCceEEEEEEeCCCceEEE
Confidence            578999999999998  45555  99999865444   11111   1235789999999999999999999988888888


Q ss_pred             EEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC----CEEEEEeCCEecCCCCC-e-eEE---------e--ec
Q psy11132         97 QRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP----LTIRWLKDGKPLSPRFP-V-NVS---------D--LD  159 (243)
Q Consensus        97 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~~~~~~~~~~-~-~~~---------~--~~  159 (243)
                      +.|.|..+|.......  ..+..|+.. |.|.+.++.|.    +++.|++++..+..... . ...         .  .-
T Consensus        89 ~~ltV~~~P~~~~i~~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  165 (210)
T 1gsm_A           89 VQLLVYAFPNQLTVSP--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLF  165 (210)
T ss_dssp             EEEEEEBCCSEEEEES--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCE
T ss_pred             EEEEEEecCCCcEEcc--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEE
Confidence            9999999887665442  356678888 99999655574    48999999999865421 1 110         0  01


Q ss_pred             cceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        160 SFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..++.+.+.....++.+.|+|.|.+..-
T Consensus       166 ~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          166 RVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             EEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             EEEEEEeecCCcccCCceEEEEEEeeCC
Confidence            1124455555555666899999999764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.87  E-value=2.6e-20  Score=132.94  Aligned_cols=174  Identities=14%  Similarity=0.199  Sum_probs=112.9

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--ee---ec--------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RY---LD--------------NSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|..  ..   +.              ...++.+... .....+|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAAS-GFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCcEEEEEEec-CcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            45688999999999996 433  4689999853  11   10              1234443322 1224689999999


Q ss_pred             CCCCeeEEEEEEeCCC------cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEe-C
Q psy11132         76 ARHSGNYSCTVRNMVA------EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLK-D  143 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~-~  143 (243)
                      .+|+|.|.|.+.+..+      .......|.|..    +|.+.... +...+..|+.+.|.|.+.+..|.+ .+.|++ +
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV-SCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE-CTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec-CCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            9999999999998642      112335677763    23332222 123457899999999996444766 999999 8


Q ss_pred             CEecCCCCCee-EEeecc--ceeEEEEeecCC--CCCeeEEEEEEccCcceeeeE
Q psy11132        144 GKPLSPRFPVN-VSDLDS--FSSLLSINSVSA--AHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~--~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      |..+....... ......  ..+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             SCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            88775410000 001111  135678877766  788999999999988765443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.87  E-value=4.9e-21  Score=139.57  Aligned_cols=177  Identities=17%  Similarity=0.258  Sum_probs=116.5

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|++..  ..+.                 ...++.+.... .....|.|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKTS-GYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEEe-cccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            45588999999999986 544  5689999832  1110                 12334333221 234679999999


Q ss_pred             CCCCeeEEEEEEeC----CCcceeEEEEEEEc----------------CCCccccccCCCCCCCCCcEEEEEEeecCCCC
Q psy11132         76 ARHSGNYSCTVRNM----VAEDTQVQRLIVNV----------------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP  135 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  135 (243)
                      .+|+|.|.|.+.+.    .........|.|..                ++.+...+ ....+.+|++++|.|.+ .+.+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~G~~v~L~C~~-~~~~~  167 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP-SSLSASLGERVSITCRA-SQDIG  167 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC-SEEEECTTCCEEEEEEE-SSCCT
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC-CeEEEECCCCEEEEEEE-ecCCC
Confidence            99999999999876    22233446677764                22222222 22457899999999999 57888


Q ss_pred             CEEEEEeCC--EecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        136 LTIRWLKDG--KPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       136 ~~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                      +.+.|++..  ..+.            ...+... ........|.|.+++.+|+|.|.|.|.|..+... ....|.|.
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSG-SRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEE-EEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEE-ecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            899999842  1111            0112222 1233456799999999999999999998655432 34677776

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.87  E-value=6.3e-22  Score=135.33  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=108.0

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC------------CceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS------------AALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .+.+.+|++|+|.|.+. . |.+.|.|++++..+...            .+..+   ...+.+|.|.+++.+|+|.|+|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~---~~~~~sL~I~~v~~~DsG~Y~C~   78 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-V-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL---DTVSGSLTIYNLTSSDEDEYEME   78 (171)
T ss_dssp             EEEEETTCCEEECCCCS-S-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE---CTTTCCEEECSCCGGGCEEEEEE
T ss_pred             EEEEEcCCCEEEcCCCC-C-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE---eCCCCeEEECCCChhhCceEEEE
Confidence            45678999999999983 4 77799999988643210            11111   11357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL  165 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  165 (243)
                      +.+..+  ...+.|.|..++..+.......   .   ..|.|.+ .+.|.+.+.|++++..+....          ...+
T Consensus        79 ~~n~~~--~~~~~L~V~~~~~~p~i~~~~~---~---~~L~C~~-~~~p~p~i~W~~~~~~l~~~~----------~~~l  139 (171)
T 1ccz_A           79 SPNITD--TMKFFLYVLEMVSKPMIYWECS---N---ATLTCEV-LEGTDVELKLYQGKEHLRSLR----------QKTM  139 (171)
T ss_dssp             CTTCCS--CEEEEEEEECCCCCCEEEEETT---T---TEEEEEC-SSCSSCEEEEEETTEEEEEES----------SSEE
T ss_pred             EeCCCC--cEEEEEEEECcCCCCEEEEecC---C---cEEEEEe-CCCCCcEEEEEECCEECcCCc----------ceEE
Confidence            987766  6778888887654332221101   1   2799999 577889999999998775321          1223


Q ss_pred             EEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+.  ..+|+|.|+|.|.|..+.....+.+
T Consensus       140 ~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          140 SYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             EEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            333  3678999999999999987766554

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.87  E-value=4.3e-21  Score=136.76  Aligned_cols=174  Identities=18%  Similarity=0.252  Sum_probs=112.5

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEECC--ee---ec---C-------------CCceEEEEee-eeceEEEEe
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKDG--RY---LD---N-------------SAALSITHVD-QYNSMLVID   72 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~---~~---~-------------~~~~~~~~~~-~~~~~l~i~   72 (243)
                      ....+.+|++++|.|.+. +.+  .+.+.|+|++  ..   +.   .             ..++.+.... ....+|.|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVAS-GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             CCEEECTTCCEEEEEEEE-SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCEEEcCCCeEEEEEEEc-CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            345688999999999996 444  5799999853  21   10   0             2344433221 224589999


Q ss_pred             ecCCCCCeeEEEEEEeCCCcc---eeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCC
Q psy11132         73 SVSARHSGNYSCTVRNMVAED---TQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDG  144 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~  144 (243)
                      +++.+|+|.|.|.+.+..+..   .....|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            999999999999999865321   1345667653    2333222222 3467899999999996444877 99999987


Q ss_pred             EecC--CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        145 KPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       145 ~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ....  ..............+.|.|..+..++ |.|+|.|.|..|...+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            6421  00000000011124678898888766 999999999999765544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.87  E-value=2.6e-21  Score=138.50  Aligned_cols=180  Identities=19%  Similarity=0.275  Sum_probs=111.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.+  .+.+.|+|++  ..+.                 ...++.+... .....+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKAS-GYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEcCCCCEEEEEEec-CCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            3445688999999999996 444  5689999853  2110                 0234443322 12357899999


Q ss_pred             cCCCCCeeEEEEEEeCCCc-ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEec
Q psy11132         74 VSARHSGNYSCTVRNMVAE-DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPL  147 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~  147 (243)
                      ++.+|+|.|.|.+.+.... ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            9999999999999875321 12334677764    2322222211 3456799999999996445765 99999998764


Q ss_pred             CCC-CCeeEE-eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        148 SPR-FPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       148 ~~~-~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ... ...... ......+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            311 000111 001124578898888877 99999999987766555555555

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.87  E-value=5.8e-21  Score=138.03  Aligned_cols=171  Identities=18%  Similarity=0.200  Sum_probs=111.7

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---ec---------CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---LD---------NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +...+....+.+|++++|.|.+. +.+.+.+.|+|+.  ..   +.         ...++.... .....+|.|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRAS-QSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETE   81 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeC-CCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-CCCEEEEEECCCChH
Confidence            33445567789999999999995 6677899999853  11   10         123444332 223568999999999


Q ss_pred             CCeeEEEEEEeCCCc-ceeEEEEEEEcCCC------------ccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEe
Q psy11132         78 HSGNYSCTVRNMVAE-DTQVQRLIVNVPPK------------IESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLK  142 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  142 (243)
                      |+|.|.|.+.+..+. ......|.|..+|.            +.........+.+|+++.|.|.+. +.+  .+.+.|++
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~k  160 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVT-GDSITSDYXSXIR  160 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEE-ccccCCcceeeEe
Confidence            999999999886542 22345677766542            111111224578999999999994 655  57899998


Q ss_pred             CC--EecC-------C---------CCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        143 DG--KPLS-------P---------RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       143 ~~--~~~~-------~---------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ++  ..+.       .         ..+...... ......|.|.+++.+|+|.|.|.|.|.
T Consensus       161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            42  2210       0         111222211 223468999999999999999999984

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.87  E-value=3.4e-23  Score=148.91  Aligned_cols=176  Identities=16%  Similarity=0.289  Sum_probs=94.9

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe--ee------------cCCCceEEEEeeeeceEEEEeecC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR--YL------------DNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      +.+...+....+.+|++++|.|.+. +.+.+.+.|+|++.  .+            ....++.... .....+|.|.+++
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~  101 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITS-TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENML  101 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEE-EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC-----
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecC-CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCCC
Confidence            4444446677899999999999986 55556899998532  11            0012222222 2235689999999


Q ss_pred             CCCCeeEEEEEEeCCCc-ceeEEEEEEEc---CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCC
Q psy11132         76 ARHSGNYSCTVRNMVAE-DTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR  150 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~  150 (243)
                      .+|+|.|.|.+.+..+. ......|.|..   +|.+...... .....|+.+.|.|.+.+..|++ .+.|+++|..+...
T Consensus       102 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          102 SEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             HHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            99999999999876543 22223455554   3333322211 1223689999999996435543 89999999877654


Q ss_pred             -CCee-EEe-ec---cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        151 -FPVN-VSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       151 -~~~~-~~~-~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                       .... ... .+   ...+.|.|.....+|+|.|+|.|.|....
T Consensus       181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          181 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             ceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence             1100 000 11   12356889988889999999999997654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.86  E-value=2.6e-21  Score=136.58  Aligned_cols=167  Identities=14%  Similarity=0.228  Sum_probs=107.7

Q ss_pred             cccCCeEEEEEEeeCCC--C-CceeEEEECCeeecCCCce---EEEE-eeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         21 LNVGERASLICSITKGD--I-PLTIKWLKDGRYLDNSAAL---SITH-VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~--~-~~~v~W~~~~~~~~~~~~~---~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      +.+|++++|.|.+.+..  | .+.+.|+|++..+......   .... .-.....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            78999999999996332  3 3599999999776432100   0000 00123579999999999999999999887753


Q ss_pred             e--eEEEE--EEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCee-EEeecc---ceeE
Q psy11132         94 T--QVQRL--IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN-VSDLDS---FSSL  164 (243)
Q Consensus        94 ~--~~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~-~~~~~~---~~~~  164 (243)
                      .  ..+.+  .+..+|.+...... .....|+.+.|.|.+.+.+|+ +.+.|+++|..+....... ....++   ..+.
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~  173 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPP-KEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSK  173 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCC-TGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCC-HHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEE
Confidence            2  22322  33445655443332 222359999999999644565 5999999999875432111 111111   1234


Q ss_pred             EEEeecCCCCCeeEEEEEEccCcc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      |.+.....+|.|.|+|.|.|....
T Consensus       174 l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          174 LNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EEECHHHcCCCCEEEEEEECCCCC
Confidence            666666667899999999998653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.86  E-value=5.1e-21  Score=135.87  Aligned_cols=183  Identities=21%  Similarity=0.274  Sum_probs=131.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.+. .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+... .....|.|.+++.+|.|.|+|.
T Consensus        18 ~~P~~~-~p~~~~~~~G~~v~l~C~~~-g~p~p~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           18 YAPKLQ-GPVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNT-PSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             EEEEEE-CCSEEEECTTCCEEEEEEEE-EESCCEEEEEETTEESSCSSSCSEEEEEE-TTEEEEEECCCSGGGCEEEEEE
T ss_pred             cCCccc-CCceEEEECCCCEEEEEEEe-ecCCCEEEEEECCeECCCCCCccEEEecC-CCeeEEEEecCChhhCeEEEEE
Confidence            467773 55568899999999999995 77888999999999987653  3333322 2357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEee---cCCCCC--EEEEEeCCEecCCCCCeeEE-eec
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT---HGDPPL--TIRWLKDGKPLSPRFPVNVS-DLD  159 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---~~~p~~--~~~W~~~~~~~~~~~~~~~~-~~~  159 (243)
                      +.|..+.....+.|.|..+|..+.....   ...+..+.|.|...   .+.|..  .+.|.+++...-..  .... ...
T Consensus        95 a~n~~g~~~~~~~l~v~~~P~~p~~~~~---~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~--~~~~~~~~  169 (215)
T 3mtr_A           95 AVNRIGQESLEFILVQADTPSSPSIDQV---EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS--KWYDAKEA  169 (215)
T ss_dssp             EECSSCEEEEEEEEEECCCCCCCEEEEE---EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE--EEEEHHHH
T ss_pred             EEECCCceEEEEEEEECCCCCCCcceEE---EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc--cccccccc
Confidence            9999998888888888877765432211   13467788998742   233333  47788776531110  0000 001


Q ss_pred             cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .....+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            112679999999999999999999999988777666666

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.1e-20  Score=137.62  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=109.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCC--CCceeEEEECC--eeec------------CCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGD--IPLTIKWLKDG--RYLD------------NSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      +....+.+|++++|.|.+. +.  +.+.+.|+|++  ....            ...++.... .....+|.|.+++.+|+
T Consensus         9 p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGS-SSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK-SGTSASLAITGLQSEDE   86 (256)
T ss_dssp             CSEEEECTTCCEEEEEECC-TTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGC
T ss_pred             CCcEEEcCCCcEEEEEecC-CCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc-cCCEEEEEECCCChhhC
Confidence            3456789999999999995 44  66799999842  1110            123444332 22356899999999999


Q ss_pred             eeEEEEEEeCCCc---ceeEEEEEEEcCCCc-------------------cccccCCCCCCCCCcEEEEEEeecCCC--C
Q psy11132         80 GNYSCTVRNMVAE---DTQVQRLIVNVPPKI-------------------ESFAFPFDGLPEGARTRVICGVTHGDP--P  135 (243)
Q Consensus        80 G~Y~C~~~~~~~~---~~~~~~l~v~~~p~~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~~p--~  135 (243)
                      |.|.|.+.+..+.   ......|.|..++..                   .........+.+|+++.|.|.+. +.+  .
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~  165 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTFSS  165 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGG
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEe-CCcccc
Confidence            9999999986542   234456777654421                   11111223477899999999994 655  7


Q ss_pred             CEEEEEeCC--Eec------CC-----------CCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        136 LTIRWLKDG--KPL------SP-----------RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       136 ~~~~W~~~~--~~~------~~-----------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      +.+.|++++  ..+      ..           ..+...... ......|.|.+++.+|+|.|.|.|.|..
T Consensus       166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            899999862  211      00           012222211 1335679999999999999999999964

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=1e-20  Score=137.12  Aligned_cols=169  Identities=17%  Similarity=0.235  Sum_probs=110.6

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCC-----CceeEEEECC--eee---c---------CCCceEEEEeeeeceEEEEeec
Q psy11132         14 PTNPERTLNVGERASLICSITKGDI-----PLTIKWLKDG--RYL---D---------NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      ..+..+.+.+|++++|.|.+. +.+     .+.+.|+|+.  ..+   .         ...++.... ......|.|.++
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   83 (247)
T 1svz_A            6 QTPLYLPVSLGDQASISCRSS-QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-SGTDFTLKISRV   83 (247)
T ss_dssp             EECSEEEECTTCCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSC
T ss_pred             ecCCeEEecCCCCEEEEEeCC-CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc-CCCEEEEEECCC
Confidence            335567789999999999995 555     5799999843  211   1         123444332 223468999999


Q ss_pred             CCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCC------------CccccccCCCCCCCCCcEEEEEEeecCCC--CCEEE
Q psy11132         75 SARHSGNYSCTVRNMVAE-DTQVQRLIVNVPP------------KIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIR  139 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~  139 (243)
                      +.+|+|.|.|.+.+..+. ......|.|..++            .+.........+.+|++++|.|.+. +.+  .+.+.
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~~v~  162 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKAT-NYAFTDYSMH  162 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEE-SSCGGGSCEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEc-CcccCCcEEE
Confidence            999999999999886543 2234567776543            1111122223478999999999995 553  57999


Q ss_pred             EEeCC--Eec------CC-----------CCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        140 WLKDG--KPL------SP-----------RFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       140 W~~~~--~~~------~~-----------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      |++++  ..+      ..           ..+..... .......|.|.+++.+|+|.|.|.|.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99853  111      00           11222221 1233578999999999999999999995

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.86  E-value=1.5e-20  Score=137.13  Aligned_cols=181  Identities=18%  Similarity=0.216  Sum_probs=114.3

Q ss_pred             CCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e-------------cCCCceEEEEee-eeceEEEEeecC
Q psy11132         16 NPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L-------------DNSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~-------------~~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      +....+.+|++++|.|.+.+. .+.+.+.|+|..  ..   +             ....++.+.... ....+|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            455668999999999999642 346799999832  11   1             012334433221 234589999999


Q ss_pred             CCCCeeEEEEEEeCCC----cceeEEEEEEEcC------------CCccccc-cCCCCCCCCCcEEEEEEeecCCCCC-E
Q psy11132         76 ARHSGNYSCTVRNMVA----EDTQVQRLIVNVP------------PKIESFA-FPFDGLPEGARTRVICGVTHGDPPL-T  137 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~------------p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~-~  137 (243)
                      .+|+|.|.|.+.+..+    .......|.|..+            +...... .....+.+|++++|.|.+ .+.+.+ .
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~  173 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA-SSSVSSSH  173 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEE-SSCCCGGG
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEE-ccCccceE
Confidence            9999999999998622    1233456777654            1111111 112457789999999999 567766 9


Q ss_pred             EEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEE
Q psy11132        138 IRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  198 (243)
Q Consensus       138 ~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~  198 (243)
                      +.|++.  +..+.            ...+... ........|.|.+++.+|+|.|.|.|.+...... .-..|.|.
T Consensus       174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~  248 (257)
T 3gkz_A          174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSG-SGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK  248 (257)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEE-EEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEccccCCCcCCCEEE-ecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            999983  22111            0011211 1223356799999999999999999998654332 23456665

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=1.2e-20  Score=139.48  Aligned_cols=180  Identities=16%  Similarity=0.235  Sum_probs=118.2

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEe
Q psy11132         15 TNPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVID   72 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~   72 (243)
                      .+....+.+|++++|.|.+. +.+  .+.+.|+|++  ..+.                 ...++.+... .....+|.|.
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTAS-GFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEE-SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEeCCCeEEEEEecc-CCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            35577899999999999986 443  4689999954  1110                 1234433322 1224789999


Q ss_pred             ecCCCCCeeEEEEEEeCCC---c--ceeEEEEEEEcCCC-------------cccc-ccCCCCCCCCCcEEEEEEeecCC
Q psy11132         73 SVSARHSGNYSCTVRNMVA---E--DTQVQRLIVNVPPK-------------IESF-AFPFDGLPEGARTRVICGVTHGD  133 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~---~--~~~~~~l~v~~~p~-------------~~~~-~~~~~~~~~g~~~~l~C~~~~~~  133 (243)
                      +++.+|+|.|.|.+.+..+   .  ......|.|..+|.             .... .+....+.+|++++|.|.+ .+.
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~  189 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA-SSS  189 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEE-SSC
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe-cCC
Confidence            9999999999999998765   1  12345677776431             1111 1122457899999999999 577


Q ss_pred             CCCEEEEEe--CCEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132        134 PPLTIRWLK--DGKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  198 (243)
Q Consensus       134 p~~~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~  198 (243)
                      + +.+.|++  ++..+.            ...++... .......|.|.+++.+|+|.|.|.|.|..+.. .....|.|.
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGS-GSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEe-cCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            7 8999999  554331            01122221 12335689999999999999999999864432 234566666

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.86  E-value=1.8e-21  Score=140.95  Aligned_cols=179  Identities=20%  Similarity=0.300  Sum_probs=115.8

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE--------------CCeeecCC----CceEEEEeeeeceEEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK--------------DGRYLDNS----AALSITHVDQYNSMLVI   71 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~l~i   71 (243)
                      +.+...+..+.+.+|++++|.|.  .+.+.+.+.|+|              ++......    .++.+........+|.|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNCD--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEE--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             cceEeCCceEEecCCCCEEEEEE--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence            34455566678999999999994  366778999998              22211111    44444432333568999


Q ss_pred             eecCCCCCeeEEEEEEeCC----CcceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEE
Q psy11132         72 DSVSARHSGNYSCTVRNMV----AEDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRW  140 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  140 (243)
                      .+++.+|+|.|.|.+.+..    ........|.|..      +|.+.........+..|+.+.|.|.+.+..|++ .+.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            9999999999999998532    2233445677763      333322222212344599999999995445654 8999


Q ss_pred             EeCCEecCCCCCeeEEe-------ecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        141 LKDGKPLSPRFPVNVSD-------LDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       141 ~~~~~~~~~~~~~~~~~-------~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      +++|..+..........       .++   ..+.|.|.....+| .|.|+|.|.|......
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            99999887542211100       011   12458888877777 8999999999765443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.86  E-value=8.3e-21  Score=135.73  Aligned_cols=170  Identities=15%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|+.  ..+.                 ...++.+.... ....+|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVS-NFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CEEEETTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEecCCCCEEEEEEec-CcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            45688999999999996 444  5689999853  2110                 12344433221 235789999999


Q ss_pred             CCCCeeEEEEEEeCCC-----c---ceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEe
Q psy11132         76 ARHSGNYSCTVRNMVA-----E---DTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLK  142 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~  142 (243)
                      .+|+|.|.|.+.+..+     .   ......|.|...    |.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  166 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNS  166 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCC-TTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEeccc-ccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence            9999999999998754     1   123457777752    322222222 3456899999999996444765 999999


Q ss_pred             CCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        143 DGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ++..+...........++   ..+.|.|..+..+| |.|+|.|.|..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          167 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             TSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             CCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            987542110000111111   13568999888888 999999999766443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.86  E-value=1.3e-20  Score=137.97  Aligned_cols=174  Identities=19%  Similarity=0.296  Sum_probs=115.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCC------CceeEEEEC--Ceeec------------CCCceEEEEeeeeceE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDI------PLTIKWLKD--GRYLD------------NSAALSITHVDQYNSM   68 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~------~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~   68 (243)
                      .+.+...+..+.+.+|++++|.|.+. +.+      .+.+.|+|+  +..+.            ...++.... ......
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~   82 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSS-QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG-SGTDFT   82 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEES-SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcC-CcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec-CCCEEE
Confidence            44555556677899999999999985 555      578999985  22111            123444432 223568


Q ss_pred             EEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCC------------------CccccccCCCCCCCCCcEEEEEEe
Q psy11132         69 LVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPP------------------KIESFAFPFDGLPEGARTRVICGV  129 (243)
Q Consensus        69 l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~~~l~C~~  129 (243)
                      |.|.+++.+|+|.|.|.+.+..+. ......|.|..+|                  .+.........+.+|++++|.|.+
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  162 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKA  162 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEE
Confidence            999999999999999999876542 2234567777653                  121111222357899999999999


Q ss_pred             ecCCC--CCEEEEEeCC--EecC-------C----------CCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        130 THGDP--PLTIRWLKDG--KPLS-------P----------RFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       130 ~~~~p--~~~~~W~~~~--~~~~-------~----------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      . +.+  .+.+.|+++.  ..+.       .          ..+..... .......|.|.+++.+|+|.|.|.|.|.
T Consensus       163 ~-~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          163 S-GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             E-SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             e-CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            5 655  3799999863  2110       0          11112211 1223578999999999999999999995

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.86  E-value=6.2e-21  Score=137.71  Aligned_cols=178  Identities=16%  Similarity=0.251  Sum_probs=114.9

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--------------eeec---CCCceEEEEeeeeceEEEEee
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--------------RYLD---NSAALSITHVDQYNSMLVIDS   73 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--------------~~~~---~~~~~~~~~~~~~~~~l~i~~   73 (243)
                      .+...+..+.+.+|++++|.|.+. + +.+.+.|+|..              ....   ...++.+........+|.|.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPI-S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECC-T-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             ccccCcceeeecCCCcEEEEEEeC-C-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            344445667899999999999984 4 66799999821              1111   113444433233467899999


Q ss_pred             cCCCCCeeEEEEEEeCCC---cceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeC
Q psy11132         74 VSARHSGNYSCTVRNMVA---EDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKD  143 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~  143 (243)
                      ++.+|+|.|.|.+.+...   .......|.|..      +|.+.........+..|+.+.|.|.+.+..|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            999999999999983211   223345666663      233222221112344589999999996446655 8999999


Q ss_pred             CEecCCCCCee---EEeecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        144 GKPLSPRFPVN---VSDLDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       144 ~~~~~~~~~~~---~~~~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      |..+.......   ....++   ..+.|.|.....+| .|.|+|.|.|......
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~  215 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  215 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence            99887543211   111111   12458888888888 6799999999865443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.86  E-value=1.9e-20  Score=133.34  Aligned_cols=170  Identities=15%  Similarity=0.270  Sum_probs=112.3

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--ee---ec--------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RY---LD--------------NSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|..  ..   +.              ...++.+... .....+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAAS-GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CeEecCCCcEEEEEEec-CccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            45688999999999996 443  4689999853  11   10              1234444332 1235689999999


Q ss_pred             CCCCeeEEEEEEeCCCc---ceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeCCEe
Q psy11132         76 ARHSGNYSCTVRNMVAE---DTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKP  146 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~  146 (243)
                      .+|+|.|.|.+.+..+.   ......|.|...    |.+....  ...+..|+.+.|.|.+.+..|.  +.+.|++++..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            99999999999986442   223456777642    2332222  2346789999999999644476  79999999876


Q ss_pred             cCCC-CCeeEEeecc--ceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        147 LSPR-FPVNVSDLDS--FSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       147 ~~~~-~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      +... ..........  ..+.|.|.....+|.|.|+|.|.|..+...
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            5210 0000001111  124688888888899999999999988654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.86  E-value=1.1e-20  Score=135.39  Aligned_cols=173  Identities=21%  Similarity=0.279  Sum_probs=109.1

Q ss_pred             CCcccccCCeEEEEEEeeCCCCC----ceeEEEECC--eeec----------------CCCceEEEEee-eeceEEEEee
Q psy11132         17 PERTLNVGERASLICSITKGDIP----LTIKWLKDG--RYLD----------------NSAALSITHVD-QYNSMLVIDS   73 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~----~~v~W~~~~--~~~~----------------~~~~~~~~~~~-~~~~~l~i~~   73 (243)
                      ....+.+|++++|.|.+. +.+.    +.+.|+|+.  ..+.                ...++.+.... ....+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFS-GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             CCSEECTTCCEEEEEEEE-SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CceeecCCCeEEEEEEEe-CcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            345688999999999996 5443    689999842  2110                11334333221 1247899999


Q ss_pred             cCCCCCeeEEEEEEeCCC------c---ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEE
Q psy11132         74 VSARHSGNYSCTVRNMVA------E---DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIR  139 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~  139 (243)
                      ++.+|+|.|.|.+.+..+      .   ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999998653      1   11235677763    2333222211 3456899999999996444766 999


Q ss_pred             EEeCCEecCCCCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        140 WLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       140 W~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      |++++..+............  ...+.|.|..+..++ |.|+|.|.|..+.....
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            99988754211111111111  124568888887766 99999999998876543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.85  E-value=3.6e-20  Score=132.98  Aligned_cols=179  Identities=17%  Similarity=0.194  Sum_probs=110.3

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--ee---ec-------------CCCceEEEEe-eeeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RY---LD-------------NSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~---~~-------------~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|..  ..   +.             ...++.+... .....+|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVY-GGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCEECTTSCEEEEEEEE-SSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEEc-cccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            45688999999999986 433  5689999853  21   10             1234444322 12246899999999


Q ss_pred             CCCeeEEEEEEeCCC------cceeEEEEEEEcC----CCccccccCCCCCCCC-CcEEEEEEeecCCCCC-EEEEEe-C
Q psy11132         77 RHSGNYSCTVRNMVA------EDTQVQRLIVNVP----PKIESFAFPFDGLPEG-ARTRVICGVTHGDPPL-TIRWLK-D  143 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~-~~~W~~-~  143 (243)
                      +|+|.|.|.+.+..+      .......|.|...    |.+...... ..+..| +.+.|.|.+.+..|.+ .+.|++ +
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence            999999999983211      1123457777652    222221111 234578 9999999996555765 999999 8


Q ss_pred             CEecCCCCCe-eEEeecc--ceeEEEEeecCC--CCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        144 GKPLSPRFPV-NVSDLDS--FSSLLSINSVSA--AHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       144 ~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |..+...... .......  ..+.|.|.....  +|.|.|+|.|.|..+.......+.+.
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             SCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             CCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            8877541000 0001111  135688887776  78999999999999877666655544

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=1e-19  Score=145.15  Aligned_cols=214  Identities=15%  Similarity=0.156  Sum_probs=130.1

Q ss_pred             cCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEE-ee--eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE-
Q psy11132         23 VGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITH-VD--QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-   97 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~-~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-   97 (243)
                      .|+.++|.|.+.+..|.+ .+.|++++............. .+  ...+.|.|.....+ .|.|+|.+.|..+...... 
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~  227 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF  227 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence            468999999997555654 899999754321000000000 00  11356888887777 8999999999887644332 


Q ss_pred             ----------EEEEEcCCC----------------------------------------------------ccccccCCC
Q psy11132         98 ----------RLIVNVPPK----------------------------------------------------IESFAFPFD  115 (243)
Q Consensus        98 ----------~l~v~~~p~----------------------------------------------------~~~~~~~~~  115 (243)
                                .+.+..+|.                                                    +...++...
T Consensus       228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~  307 (512)
T 1zvo_C          228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ  307 (512)
T ss_pred             cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChH
Confidence                      234433332                                                    111111212


Q ss_pred             CCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        116 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+..|+.+.|.|.+.+.+| ...++|+++|..+......  .....++   ..+.|.|.....+|.|.|+|.|.|..+..
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            3557999999999953344 3599999999886522110  1111111   13568898888999999999999988754


Q ss_pred             eeeEEEEEE-eecCCCCCeeeee----ccceee-eccCcccc-c---ccceEEeCCeeE
Q psy11132        190 RYSSKLQVK-GNLNRLPPSYTLV----FSQASY-MSTSYYSF-E---QDSWMIDNENYV  238 (243)
Q Consensus       190 ~~~~~l~v~-~~~~~~~p~~~~~----~~~~~~-~~~~~~~~-~---~~~W~~~~~~~~  238 (243)
                      . ...+... +.....+|.+.+.    .++.+. +.|....+ |   .+.|++||+.+.
T Consensus       388 ~-~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  445 (512)
T 1zvo_C          388 Q-RLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVN  445 (512)
T ss_pred             C-ceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECc
Confidence            3 2223221 1100245665544    245667 89988875 3   589999997653

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.85  E-value=2.9e-21  Score=145.48  Aligned_cols=172  Identities=15%  Similarity=0.246  Sum_probs=111.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCc---eeEEEECC-eeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         16 NPERTLNVGERASLICSITKGDIPL---TIKWLKDG-RYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~---~v~W~~~~-~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +....+.+|+.+.|.|.+.+..|.+   .+.|++++ ..+...........+   ...+.|.|.+++.+|+|.|+|.+.|
T Consensus       120 p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n  199 (323)
T 2wqr_A          120 PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH  199 (323)
T ss_dssp             CCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             CCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEEC
Confidence            4445688999999999986545544   89999975 433322111110000   1245799999999999999999998


Q ss_pred             CCCcceeEEEEEE----EcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCee---EEeec-
Q psy11132         89 MVAEDTQVQRLIV----NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN---VSDLD-  159 (243)
Q Consensus        89 ~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~---~~~~~-  159 (243)
                      ..........+.+    ..+|.+...... .....|+.+.|.|.+.+..|+ +.+.|+++|..+.......   ....+ 
T Consensus       200 ~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g  278 (323)
T 2wqr_A          200 PHLPRALMRSTTKTSGPRAAPEVYAFATP-EWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGS  278 (323)
T ss_dssp             TTSSSCEEEEECCCCSCCBCCEEEEEECC-CCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSS
T ss_pred             CCCCCCeeeEEEccCCCCCCCEEEEeCCC-hHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCC
Confidence            7644332333321    134444433332 222349999999999533554 4899999999886532110   01111 


Q ss_pred             --cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        160 --SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       160 --~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                        ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       279 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          279 GFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence              12357899999999999999999998876

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.85  E-value=3.2e-21  Score=141.67  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCC---C-ceEEEEeeeeceEEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNS---A-ALSITHVDQYNSMLVI   71 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~---~-~~~~~~~~~~~~~l~i   71 (243)
                      ..+...+..+.+.+|++++|.|.+. + +.+.+.|+|.  +...            ...   . ++..........+|.|
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPE-K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECC-T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEec-C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            3444456667899999999999984 3 5679999982  2111            000   0 3333222233578999


Q ss_pred             eecCCCCCeeEEEEEEeCCC----cceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEE
Q psy11132         72 DSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRW  140 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  140 (243)
                      .+++.+|+|.|.|.+.+...    .......|.|..      +|.+.........+..|+.+.|.|.+.+..|.+ .+.|
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  185 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  185 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEE
Confidence            99999999999999986432    222345677765      333322222212234599999999996446755 8999


Q ss_pred             EeCCEecCCCCCeeE-------Eeecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        141 LKDGKPLSPRFPVNV-------SDLDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       141 ~~~~~~~~~~~~~~~-------~~~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      +++|..+........       ...++   ..+.|.|.....+| +|.|+|.|.|......
T Consensus       186 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~  246 (270)
T 3qib_D          186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  246 (270)
T ss_dssp             EETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence            999998865322110       00011   12557787777777 9999999999876544

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.85  E-value=9.2e-20  Score=144.24  Aligned_cols=213  Identities=13%  Similarity=0.227  Sum_probs=129.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEe
Q psy11132         15 TNPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVID   72 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~   72 (243)
                      .+....+.+|++++|.|.+. +.+  ...+.|+|+.  ..+.                 ...++.+... .....+|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            7 QSGAEVKKPGASVKVSCKAS-GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             cCCcEEEeCCCCEEEEEEec-CCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            35567789999999999985 432  5689999853  2110                 0123333221 1234689999


Q ss_pred             ecCCCCCeeEEEEEEeCCCc------ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC-C-EEEE
Q psy11132         73 SVSARHSGNYSCTVRNMVAE------DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-L-TIRW  140 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~-~~~W  140 (243)
                      +++.+|+|.|.|.+.+..+.      ......|.|..    +|.+....  ...+..|+.+.|.|.+.+..|. + .+.|
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~g~~v~L~C~~~g~~P~~p~~v~W  163 (475)
T 1iga_A           86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS--LCSTQPDGNVVIACLVQGFFPQEPLSVTW  163 (475)
T ss_pred             CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC--ccccCCCCeEEEEEEEeeecCCCceEEEE
Confidence            99999999999999987641      22345677763    22222211  1233689999999999533465 4 9999


Q ss_pred             EeCCEecCCCCCeeEE-eec---cceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEEe-------------ecC
Q psy11132        141 LKDGKPLSPRFPVNVS-DLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVKG-------------NLN  202 (243)
Q Consensus       141 ~~~~~~~~~~~~~~~~-~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~~-------------~~~  202 (243)
                      ++++............ ..+   ...+.|.|..+..+|+|.|+|.|.|..+.. ...+.+.|.-             ...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~  243 (475)
T 1iga_A          164 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPS  243 (475)
T ss_pred             cCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCC
Confidence            9987532211000000 011   113468888888899999999999988742 2223322210             000


Q ss_pred             CCCCee-------e-eeccceeeeccCcccc-----cccce
Q psy11132        203 RLPPSY-------T-LVFSQASYMSTSYYSF-----EQDSW  230 (243)
Q Consensus       203 ~~~p~~-------~-~~~~~~~~~~~~~~~~-----~~~~W  230 (243)
                      ..+|.+       . +..++.+.+.|.....     ..+.|
T Consensus       244 ~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          244 CCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             CCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence            013332       1 2457788899987654     37899

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.85  E-value=1.2e-20  Score=152.78  Aligned_cols=168  Identities=19%  Similarity=0.284  Sum_probs=118.9

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC------------CCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN------------SAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      ....+.+|++++|.|.+..+.|.+.+.|++++..+..            ..+..+.    .+.+|.|.+++.+|+|.|+|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~i~~v~~~D~G~Y~C  449 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL----PNGSLFLPAVGIQDEGIFRC  449 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC----TTSCEEESSCCGGGCEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc----CCceEEEeccccccCeEEEE
Confidence            3466889999999999844778889999998753211            1121111    24579999999999999999


Q ss_pred             EEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcE-EEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE-e---e
Q psy11132         85 TVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGART-RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-D---L  158 (243)
Q Consensus        85 ~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~---~  158 (243)
                      .+.+..+.. ...+.|.|..+|..+........+..|... .|.|.+..+.|.+.++|++++..+......... .   .
T Consensus       450 ~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~  529 (581)
T 3o3u_N          450 QAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR  529 (581)
T ss_dssp             EEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEE
T ss_pred             EEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEE
Confidence            999988876 778889998866554433332334455554 569999644799999999999998754332111 1   1


Q ss_pred             --c----cceeEEEEeecCC-CCCeeEEEEEEccCcc
Q psy11132        159 --D----SFSSLLSINSVSA-AHSGEYTCVASNTAAQ  188 (243)
Q Consensus       159 --~----~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~  188 (243)
                        +    ...+.|.|..+.. ++.|.|+|.|.|..+.
T Consensus       530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          530 HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             CTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             cCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence              1    1136799998884 4478999999998653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.85  E-value=4.4e-21  Score=140.08  Aligned_cols=175  Identities=15%  Similarity=0.180  Sum_probs=103.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec---C-C--------------CceEEEEeeeeceE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD---N-S--------------AALSITHVDQYNSM   68 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~---~-~--------------~~~~~~~~~~~~~~   68 (243)
                      +|.+...+..+.+.+|++++|.|.+. +.+.+.+.|+|.  +....   . .              .+...........+
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLA-EGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR   80 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEc-cCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence            46666667788899999999999985 666779999983  11110   0 0              11111112223568


Q ss_pred             EEEeecCCCCCeeEEEEEEeCCC---cceeEEEEEEEcCC-----------------CccccccCCCCCCCCCcEEEEEE
Q psy11132         69 LVIDSVSARHSGNYSCTVRNMVA---EDTQVQRLIVNVPP-----------------KIESFAFPFDGLPEGARTRVICG  128 (243)
Q Consensus        69 l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~p-----------------~~~~~~~~~~~~~~g~~~~l~C~  128 (243)
                      |.|.+++.+|+|.|.|.+.+..+   .......|.|..++                 .+... .....+.+|+++.|.|.
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQA-QSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECC-CCCEEEETTCCEEECCE
T ss_pred             EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEe-CCEEEEcCCCCEEEEEE
Confidence            99999999999999999998755   23344567776532                 11111 12245678999999998


Q ss_pred             eecCCCCCEEEEEeCCE--ecC------------CCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        129 VTHGDPPLTIRWLKDGK--PLS------------PRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       129 ~~~~~p~~~~~W~~~~~--~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      +....+.+.+.|++.+.  .+.            ...+..... .......|.|.+++.+|+|.|.|.+.+.
T Consensus       160 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            85334788999998432  100            001111110 1122456999999999999999999854

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.84  E-value=7.7e-21  Score=140.24  Aligned_cols=180  Identities=18%  Similarity=0.269  Sum_probs=115.4

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee-------------c----CCCceEEEEeeeeceEEE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL-------------D----NSAALSITHVDQYNSMLV   70 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~-------------~----~~~~~~~~~~~~~~~~l~   70 (243)
                      +.+...+..+.+.+|++++|.|.+. +.+.+.+.|+|++  ...             .    ...++.+........+|.
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSL-DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEES-SSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeC-CCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            4445556678899999999999994 6677899999864  111             0    123444433223356899


Q ss_pred             EeecCCCCCeeEEEEEEeCCC------cceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CE
Q psy11132         71 IDSVSARHSGNYSCTVRNMVA------EDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LT  137 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~  137 (243)
                      |.+++.+|+|.|.|.+.+..+      .......|.|..      +|.+.........+..|+.+.|.|.+.+..|+ +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998421      112335677764      23332221111123468999999999644454 79


Q ss_pred             EEEEeCCEecCCCCCee---EE----eecc---ceeEEEEeecCCCC-CeeEEEEEEccCccee
Q psy11132        138 IRWLKDGKPLSPRFPVN---VS----DLDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQAR  190 (243)
Q Consensus       138 ~~W~~~~~~~~~~~~~~---~~----~~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  190 (243)
                      +.|++++..+.......   ..    ..++   ..+.|.|......| .|.|+|.|.|......
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            99999999886542111   00    0111   12457777666654 6789999999876554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.84  E-value=7e-20  Score=134.36  Aligned_cols=175  Identities=18%  Similarity=0.253  Sum_probs=111.5

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCC-----CceeEEEECC--ee---ec---------CCCceEEEEeeeeceE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDI-----PLTIKWLKDG--RY---LD---------NSAALSITHVDQYNSM   68 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~   68 (243)
                      ..+.+...+..+.+.+|++++|.|.+. +.+     .+.+.|+++.  ..   +.         ...++.... .....+
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~   91 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSS-QSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG-SGTDFT   91 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEec-CCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc-CCCEEE
Confidence            345555556777899999999999985 444     4799999853  21   11         123444432 223568


Q ss_pred             EEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCC----------------------ccccccCCCCCCCCCcEEE
Q psy11132         69 LVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPK----------------------IESFAFPFDGLPEGARTRV  125 (243)
Q Consensus        69 l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~----------------------~~~~~~~~~~~~~g~~~~l  125 (243)
                      |+|.+++.+|+|.|.|.+.+..+. ......|.|...+.                      +.........+.+|++++|
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred             EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence            999999999999999999876442 22334566654321                      0111112245788999999


Q ss_pred             EEEeecCCC--CCEEEEEeCC--Eec-------------------CCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEE
Q psy11132        126 ICGVTHGDP--PLTIRWLKDG--KPL-------------------SPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       126 ~C~~~~~~p--~~~~~W~~~~--~~~-------------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      .|.+. +.+  .+.+.|++++  ..+                   ....+...... ......|.|.+++.+|+|.|.|.
T Consensus       172 ~C~~~-~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          172 SCVTS-GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEE-SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEec-CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            99995 655  3799999842  211                   01112222211 12346799999999999999999


Q ss_pred             EEcc
Q psy11132        182 ASNT  185 (243)
Q Consensus       182 ~~n~  185 (243)
                      |.+.
T Consensus       251 a~~~  254 (268)
T 1x9q_A          251 GASY  254 (268)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            9874

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.84  E-value=5.8e-21  Score=136.99  Aligned_cols=179  Identities=20%  Similarity=0.294  Sum_probs=113.9

Q ss_pred             CCCcc-CCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeee-cCCCceEEEEee---eeceEEEEeecCCCCCee
Q psy11132          9 PPKLS-PTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYL-DNSAALSITHVD---QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~-~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+. ..+....+.+|+.++|.|.+.+..|.  ..+.|+++|..+ ...........+   .....|.|.+++.+|.|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            45544 33555667899999999999744563  499999998876 322211111000   123579999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--  154 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--  154 (243)
                      |+|.+.+..+.......+.+.    .+|.+.........+ .|..+.|.|.+.+.+| .+.+.|+++|..+.......  
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  170 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTA  170 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECC
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCc
Confidence            999999876543333333221    234433322221122 3567999999964455 47999999999886543111  


Q ss_pred             -EEe--------ec-c---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        155 -VSD--------LD-S---FSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       155 -~~~--------~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                       ...        .+ +   ..+.|.|.....+|.|.|+|.|.|....
T Consensus       171 ~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          171 VLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence             111        11 1   1356888887788899999999998654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.84  E-value=1.6e-19  Score=128.15  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=106.0

Q ss_pred             CCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+. +.+  .+.+.|+|+.  ..+.                ...++.+.... ....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVS-GFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             CCCEECTTCCEEEEEEEC-SSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCeeecCCCcEEEEEEEC-CCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            345688999999999985 433  4689999853  2110                12334333221 124689999999


Q ss_pred             CCCCeeEEEEEEeCCCc---ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEec
Q psy11132         76 ARHSGNYSCTVRNMVAE---DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPL  147 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~  147 (243)
                      .+|+|.|.|.+.+..+.   ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .+.|++++..+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999999876421   22345677763    2333322222 3457899999999996444766 99999988654


Q ss_pred             CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        148 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ...................+.....++ |.|+|.|.|..+....
T Consensus       166 ~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          166 DVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             SCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             ceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            321111111111111111233444456 9999999998886543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.84  E-value=2.8e-19  Score=127.41  Aligned_cols=170  Identities=18%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEECC--eee------c-------------CCCceEEEEee-eeceEEEEeec
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKDG--RYL------D-------------NSAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~~------~-------------~~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      ...+.+|++++|.|.+.+. .+.+.+.|+|..  ...      .             ...++.+.... ....+|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            4568899999999999632 224689999742  111      0             12344443221 23468999999


Q ss_pred             CCCCCeeEEEEEEeCC--CcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeCCEe
Q psy11132         75 SARHSGNYSCTVRNMV--AEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKP  146 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~  146 (243)
                      +.+|+|.|.|.+.+..  ........|.|..    +|.+...... .. ..|+.+.|.|.+..+.|.  +.+.|++++..
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~  166 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLC-ST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQG  166 (221)
T ss_dssp             CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECC-SC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred             CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCc-cc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence            9999999999998764  2233345666652    2222211122 22 689999999999644675  59999999876


Q ss_pred             cCCCCCeeEE-eecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        147 LSPRFPVNVS-DLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       147 ~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      +......... ..++   ..+.|.|.....+|+|.|+|.|.|..+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          167 VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             CEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            6311100000 0111   13568899999999999999999987543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.84  E-value=3.7e-20  Score=136.65  Aligned_cols=190  Identities=15%  Similarity=0.238  Sum_probs=113.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-CCceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEeec
Q psy11132         16 NPERTLNVGERASLICSITKGD-IPLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDSV   74 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~   74 (243)
                      +....+.+|++++|.|.+.... +.+.+.|++..  ....                 ...++.+... .....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            5567789999999999985322 45689999742  1110                 0123333321 222368999999


Q ss_pred             CCCCCeeEEEEEEeCC---------CcceeEEEEEEEc---------------CCCccccccCCCCCCCCCcEEEEEEee
Q psy11132         75 SARHSGNYSCTVRNMV---------AEDTQVQRLIVNV---------------PPKIESFAFPFDGLPEGARTRVICGVT  130 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~---------~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~  130 (243)
                      +.+|+|.|.|.+.+..         ........|.|..               ++.+..  .+...+.+|++++|.|.+.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~--~p~~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQ--PPSVSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBC--CSEEEECTTCCEEEEEECC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEe--CCcEEEecCCCEEEEEEec
Confidence            9999999999998761         1122344566654               222222  1225578999999999995


Q ss_pred             cCCC-CCEEEEEeCC--EecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc---eeee
Q psy11132        131 HGDP-PLTIRWLKDG--KPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ---ARYS  192 (243)
Q Consensus       131 ~~~p-~~~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~---~~~~  192 (243)
                      ...+ .+.+.|++..  ..+.            ...+.... .......|.|.+++.+|+|.|.|.+.|..+.   ....
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~  243 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSAS-RSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGG  243 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEE-EETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCC
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEE-ccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCC
Confidence            3244 4799999732  2111            01112222 2234567999999999999999999997622   2234


Q ss_pred             EEEEEEeecCCCCCeee
Q psy11132        193 SKLQVKGNLNRLPPSYT  209 (243)
Q Consensus       193 ~~l~v~~~~~~~~p~~~  209 (243)
                      ..|.|.+.+. .+|.+.
T Consensus       244 t~l~V~~~~~-~~P~v~  259 (280)
T 3fku_X          244 TKLTVLGQPK-AAPSAA  259 (280)
T ss_dssp             CEEEEC-----------
T ss_pred             EEEEECCCCC-CCCcEE
Confidence            5666654332 344443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.84  E-value=1.1e-20  Score=136.07  Aligned_cols=179  Identities=16%  Similarity=0.210  Sum_probs=109.7

Q ss_pred             CCCccCCCCCcc--cccCCeEEEEEEeeCCC--CCc-eeEEEECCeeecCCCce-EEEE---eeeeceEEEEeecCCCCC
Q psy11132          9 PPKLSPTNPERT--LNVGERASLICSITKGD--IPL-TIKWLKDGRYLDNSAAL-SITH---VDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         9 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~--~~~-~v~W~~~~~~~~~~~~~-~~~~---~~~~~~~l~i~~~~~~d~   79 (243)
                      +|.+...+....  +.+|++++|.|.+.+..  |.+ .+.|++++..+...... ....   .-.....|.|.+++.+|.
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            344443344444  78999999999997432  654 89999998765432100 0000   001246799999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEE----EEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCee
Q psy11132         80 GNYSCTVRNMVAEDTQVQRL----IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~  154 (243)
                      |.|+|.+.+..+.......+    .+..+|.+...... .....|+.+.|.|.+.+.+|+ +.+.|+++|..+.......
T Consensus        95 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  173 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP-KEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTP  173 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCC-GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             CeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCC-hHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecC
Confidence            99999999887754222222    23344554433322 122347899999999644665 5899999999875422111


Q ss_pred             E-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        155 V-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       155 ~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      . ...++.   .+.|.+.....+|.|.|+|.|.|....
T Consensus       174 ~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          174 PTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            1 111111   233555544445789999999998654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.83  E-value=8.7e-21  Score=133.89  Aligned_cols=166  Identities=15%  Similarity=0.247  Sum_probs=98.0

Q ss_pred             ccCCeEEEEEEeeCCCC---CceeEEEECCeeecCCCceEEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132         22 NVGERASLICSITKGDI---PLTIKWLKDGRYLDNSAALSITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVAEDT   94 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   94 (243)
                      .+|+++.|.|.+.+..|   .+.+.|+|++..+.............+    ...|.|......|+|.|+|.+.+..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            78999999999974333   359999999987754311000000000    12233333444459999999999876542


Q ss_pred             eEEEE----EEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEE-eecc---ceeEE
Q psy11132         95 QVQRL----IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVS-DLDS---FSSLL  165 (243)
Q Consensus        95 ~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~-~~~~---~~~~l  165 (243)
                      ....+    .+..+|.+......... ..|..+.|.|.+.+.+|+ +.+.|+++|..+......... ..++   ..+.|
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  174 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL  174 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEE
Confidence            22233    22344554433322122 246679999999643564 599999999887632111111 1111   12345


Q ss_pred             EEeecCCCCCeeEEEEEEccCcc
Q psy11132        166 SINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       166 ~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .+.....+|.|.|+|.|.|....
T Consensus       175 ~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          175 TVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EECHHHcCCCCEEEEEEEcCCcC
Confidence            56555556799999999997654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.83  E-value=1.6e-19  Score=131.67  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=109.7

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.+  .+.+.|+|+.  ..+.                 ...++.+... .....+|.|.+
T Consensus        13 p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKAS-GYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEEcCCCCEEEEEEeC-CcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            4456789999999999996 444  5689999863  2110                 0234443322 12356899999


Q ss_pred             cCCCCCeeEEEEEEeCCCc---ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCE
Q psy11132         74 VSARHSGNYSCTVRNMVAE---DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGK  145 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~  145 (243)
                      ++.+|+|.|.|.+.+..+.   ......|.|..    +|.+...... ..+..|+.+.|.|.+....|.+ .+.|++++.
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            9999999999999985421   12335677764    2333222222 3456799999999996445765 999999987


Q ss_pred             ecCCCCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        146 PLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       146 ~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+............  ...+.|.|.....+| |.|+|.|.|.....
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            65311000011111  123678998888877 99999999976553

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.83  E-value=9.8e-20  Score=132.44  Aligned_cols=180  Identities=17%  Similarity=0.209  Sum_probs=112.5

Q ss_pred             CCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e--------------cCCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L--------------DNSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~--------------~~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+.+. .+...+.|+|..  ..   +              ....++.+.... ....+|+|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            34568899999999998631 234689999842  11   1              012344443322 235679999999


Q ss_pred             CCCCeeEEEEEEeCC----CcceeEEEEEEE----cCCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEe
Q psy11132         76 ARHSGNYSCTVRNMV----AEDTQVQRLIVN----VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKP  146 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~  146 (243)
                      .+|+|.|.|.+.+..    ........|.|.    .+|.+...... ..+..|+.+.|.|.+.++.|.+ .+.|++++..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCC-cccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence            999999999998752    222334567775    22333222222 3456799999999996447755 9999998874


Q ss_pred             cCCCCCeeEEeec--cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        147 LSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       147 ~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +............  ...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       167 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          167 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            3211000011111  113678999988889 99999999998877666665544

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.83  E-value=1.5e-19  Score=134.04  Aligned_cols=182  Identities=15%  Similarity=0.180  Sum_probs=114.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEe-eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHV-DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~   73 (243)
                      +....+.+|++++|.|.+. +.+  .+.+.|+++.  ..+.                 ...++.+... .....+|+|.+
T Consensus        29 p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKAS-GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             CCcEEecCCCCEEEEEecc-CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            4567899999999999986 444  4689999853  1110                 1133333322 12246899999


Q ss_pred             cCCCCCeeEEEEEEeCC-Cc----ceeEEEEEEEcC-----------C---Cccccc-cCCCCCCCCCcEEEEEEeecCC
Q psy11132         74 VSARHSGNYSCTVRNMV-AE----DTQVQRLIVNVP-----------P---KIESFA-FPFDGLPEGARTRVICGVTHGD  133 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~-~~----~~~~~~l~v~~~-----------p---~~~~~~-~~~~~~~~g~~~~l~C~~~~~~  133 (243)
                      ++.+|+|.|.|.+.+.. +.    ......|.|..+           +   ...... .....+.+|++++|.|.+ .+.
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~  186 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS-SQS  186 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE-SSC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc-CCc
Confidence            99999999999999864 11    112346666651           1   111111 112346789999999999 576


Q ss_pred             CCC------EEEEEeCC--EecC----C--------CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-ee
Q psy11132        134 PPL------TIRWLKDG--KPLS----P--------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YS  192 (243)
Q Consensus       134 p~~------~~~W~~~~--~~~~----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~  192 (243)
                      +.+      .+.|+++.  ..+.    .        ..+.... .......|.|.+++.+|+|.|.|.|.|.....- .-
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g  265 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS-GSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG  265 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEE-ecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCC
Confidence            654      89999863  2110    0        1122221 123356899999999999999999999654332 23


Q ss_pred             EEEEEEee
Q psy11132        193 SKLQVKGN  200 (243)
Q Consensus       193 ~~l~v~~~  200 (243)
                      ..|.|.+.
T Consensus       266 t~l~v~~~  273 (291)
T 2gki_A          266 TKLEIKHH  273 (291)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEee
Confidence            45666643

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.82  E-value=2.3e-19  Score=129.31  Aligned_cols=172  Identities=16%  Similarity=0.262  Sum_probs=108.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eeec---------------CCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLD---------------NSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +..+.+.+|++++|.|.+.  .+.+.+.|+|++  ..+.               ...++.+........+|.|.+++.+|
T Consensus         6 p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   83 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQT--NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQ   83 (238)
T ss_dssp             CSEEEEETTCCEEEEEEES--SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGG
T ss_pred             CCeeEEeCCCcEEEEEEeC--CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCccc
Confidence            4566789999999999983  346799999863  1110               12333332212235689999999999


Q ss_pred             CeeEEEEEEeCCC---c--ceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEe
Q psy11132         79 SGNYSCTVRNMVA---E--DTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP  146 (243)
Q Consensus        79 ~G~Y~C~~~~~~~---~--~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~  146 (243)
                      +|.|.|.+.+..+   .  ......|.|..      +|.+.........+..|+.+.|.|.+.+..|. +.+.|+++|..
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~  163 (238)
T 1bec_A           84 TSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE  163 (238)
T ss_dssp             CEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEE
T ss_pred             CEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEE
Confidence            9999999998632   1  12334577765      33333322222345679999999999644464 49999999998


Q ss_pred             cCCCCCee---EEeeccc---eeEEEEeecCCCC-CeeEEEEEEccCcce
Q psy11132        147 LSPRFPVN---VSDLDSF---SSLLSINSVSAAH-SGEYTCVASNTAAQA  189 (243)
Q Consensus       147 ~~~~~~~~---~~~~~~~---~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  189 (243)
                      +.......   ....++.   .+.|.|......| .|.|+|.|.|.....
T Consensus       164 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  213 (238)
T 1bec_A          164 VHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  213 (238)
T ss_dssp             ECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred             CCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence            86543211   1111111   1334444433334 678999999975433

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-18  Score=138.37  Aligned_cols=177  Identities=21%  Similarity=0.274  Sum_probs=106.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCC-C--ceeEEEEC--Ceee---c-------------CCCceEEEEe-eeeceEEEEee
Q psy11132         16 NPERTLNVGERASLICSITKGDI-P--LTIKWLKD--GRYL---D-------------NSAALSITHV-DQYNSMLVIDS   73 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~-~--~~v~W~~~--~~~~---~-------------~~~~~~~~~~-~~~~~~l~i~~   73 (243)
                      +..+.+.+|+.++|.|.+..... .  ..+.|||.  +..+   .             ...++.+... .....+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            34567889999999999853221 2  68999985  2211   0             0133333321 12247899999


Q ss_pred             cCCCCCeeEEEEEEeCCC-----------c--ceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCCCC
Q psy11132         74 VSARHSGNYSCTVRNMVA-----------E--DTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDPPL  136 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  136 (243)
                      ++.+|+|.|.|.+.+..+           .  ......|.|...    |.+............|+.+.|.|.+.+..|.+
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p  166 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS  166 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence            999999999999987532           1  123456777632    22221111101023468999999996444754


Q ss_pred             -EEEEEeCCEecCCCCCeeEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        137 -TIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       137 -~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                       .++|++++..............+   ...+.|.|.....+ .|.|+|.|.|..+.....+
T Consensus       167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence             99999965432100000001111   11356888877777 8999999999988655443

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.82  E-value=2e-19  Score=132.17  Aligned_cols=208  Identities=16%  Similarity=0.140  Sum_probs=109.2

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .+++..+.+|+.+.|+|.+. ...+..+.|...  ...+...        +.....+.+.+++.+  |.|.|.+......
T Consensus         5 ~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~--------g~~~~~~~l~~v~~~--~~y~C~~~~~~~~   73 (291)
T 1mq8_A            5 SPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLP--------GNNRKVYELSNVQED--SQPMCYSNCPDGQ   73 (291)
T ss_dssp             ECSEEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCS--------CSSEEEEEEESCCSC--CCCEEEEECSSCE
T ss_pred             eCCccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccC--------CCceEEEEEEecccC--CeEEEEEEcCCcc
Confidence            35567799999999999984 333335888631  1111011        111234677777743  5799999754444


Q ss_pred             ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEEeeccceeEEEEeec
Q psy11132         93 DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus        93 ~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  170 (243)
                      ....+.|.|..+|...........+.+|+.++|.|.+.++.|..  .++|++++..+.....    ........|.+...
T Consensus        74 ~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~----~~~~~~~~l~~~~~  149 (291)
T 1mq8_A           74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA----VGEPAEVTTTVLVR  149 (291)
T ss_dssp             EEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC----CBTTEEEEEECCCS
T ss_pred             EEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC----CCCCceEEEEeeee
Confidence            56677888888877655544334578899999999997666654  6899999977653221    01122456776666


Q ss_pred             CCCCCeeEEEEEEccCcc--------eeeeEEEEEEeecCCCCCee----eeeccceeeeccCcccc-c----ccceEEe
Q psy11132        171 SAAHSGEYTCVASNTAAQ--------ARYSSKLQVKGNLNRLPPSY----TLVFSQASYMSTSYYSF-E----QDSWMID  233 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~--------~~~~~~l~v~~~~~~~~p~~----~~~~~~~~~~~~~~~~~-~----~~~W~~~  233 (243)
                      ..++.+.|+|.|.|..+.        .+....|.|.-.+. ..+.+    .+..++.+.++|...++ |    .+.|+++
T Consensus       150 ~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~-~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~  228 (291)
T 1mq8_A          150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA-TPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG  228 (291)
T ss_dssp             SSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------------------
T ss_pred             eccCCceEEEEEEecCCccCCccccccccceEEEEEecCC-CCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEEC
Confidence            666667999999997653        23445566652111 11111    34568899999998865 3    5999999


Q ss_pred             CCeeE
Q psy11132        234 NENYV  238 (243)
Q Consensus       234 ~~~~~  238 (243)
                      |+.+.
T Consensus       229 g~~l~  233 (291)
T 1mq8_A          229 DQRLN  233 (291)
T ss_dssp             -----
T ss_pred             CEecC
Confidence            98764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.82  E-value=1.2e-19  Score=131.93  Aligned_cols=170  Identities=17%  Similarity=0.267  Sum_probs=95.0

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEECC--eeec-----------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKDG--RYLD-----------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ...+.+|++++|.|.+. +.+  .+.+.|+|..  ..+.                 ...++.+.... ....+|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAAS-GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CEEECTTCEEEEEEEEE-SSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CEEEcCCCcEEEEEEec-cccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            45688999999999996 443  4689999853  1110                 12344333221 235689999999


Q ss_pred             CCCCeeEEEEEEeCCCc-------------ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-E
Q psy11132         76 ARHSGNYSCTVRNMVAE-------------DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-T  137 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~~-------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~  137 (243)
                      .+|+|.|.|.+.+..+.             ......|.|..    +|.+...... ..+..|+.+.|.|.+.+..|.+ .
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~~g~~P~pi~  166 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVT  166 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCCE
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEEeeEECCCcE
Confidence            99999999999986541             11234677764    2333222211 2356799999999996445766 9


Q ss_pred             EEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        138 IRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       138 ~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      +.|++++..+...........++   ..+.|.|..+..+| |.|+|.|.|......
T Consensus       167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          167 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             EEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             EEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            99999987643110000111111   13557787777777 999999999765433

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.81  E-value=3.2e-20  Score=134.93  Aligned_cols=177  Identities=15%  Similarity=0.225  Sum_probs=110.3

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---ec------------CCCceEEEEeeeeceEEEEeec
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---LD------------NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +...+..+.+.+|++++|.|.+.  .+.+.+.|+++.  ..   +.            ...++.+.........|.|.++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN--LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC--SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC--CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            44445667899999999999983  346799999853  11   10            1123333221223468999999


Q ss_pred             CCCCCeeEEEEEEeCC---CcceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCC
Q psy11132         75 SARHSGNYSCTVRNMV---AEDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDG  144 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~  144 (243)
                      +.+|+|.|.|.+.+..   ........|.|..      +|.+.........+..|+.+.|.|.+.+..|. +.+.|+++|
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            9999999999999752   1112234566653      23332221111123368999999999644564 599999999


Q ss_pred             EecCCCCCee--EE-----eecc---ceeEEEEeecCCC-CCeeEEEEEEccCccee
Q psy11132        145 KPLSPRFPVN--VS-----DLDS---FSSLLSINSVSAA-HSGEYTCVASNTAAQAR  190 (243)
Q Consensus       145 ~~~~~~~~~~--~~-----~~~~---~~~~l~i~~~~~~-d~g~y~C~~~n~~g~~~  190 (243)
                      ..+.......  ..     ..++   ..+.|.|...... +.|.|+|.|.|......
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            8876542111  00     0111   1245777766554 57799999999876554

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.81  E-value=4.3e-18  Score=120.20  Aligned_cols=156  Identities=16%  Similarity=0.256  Sum_probs=111.1

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCC---CceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDI---PLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      ...|....+..|+.++|+|.+.++.|   +..++|+|++..+...           ...|.+..++..|+|.|+|.+.+.
T Consensus         6 s~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-----------T~tLti~s~t~sdSG~YqCvVTDa   74 (304)
T 3shs_A            6 SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-----------TATLTVADATSENAGSYKVTVQDT   74 (304)
T ss_dssp             EEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-----------cceEEeeeccccCCeEEEEEEEEC
Confidence            33455666889999999999977777   6699999999876542           346888899999999999999987


Q ss_pred             CCcceeEEEEEEEcCCCcc--ccccCCCCCCCCCcEEEEEEe--ecCCC-----CCEEEEEeCCEecCCCCCeeEEeecc
Q psy11132         90 VAEDTQVQRLIVNVPPKIE--SFAFPFDGLPEGARTRVICGV--THGDP-----PLTIRWLKDGKPLSPRFPVNVSDLDS  160 (243)
Q Consensus        90 ~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~~g~~~~l~C~~--~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~  160 (243)
                      .+.......+.|...+.+.  ...+....+..|..+.|.+.+  .+|.+     ..+++|++++..+...          
T Consensus        75 ~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA----------  144 (304)
T 3shs_A           75 DTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT----------  144 (304)
T ss_dssp             TTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS----------
T ss_pred             CCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc----------
Confidence            7765433333444332221  111111223457888998877  55555     4699999999876533          


Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                        ..|.+......++|.|+|.+.|..+....
T Consensus       145 --q~lT~sS~TateaG~YtV~VTn~~~~c~~  173 (304)
T 3shs_A          145 --QDITIQEFTADKNGVYTVKVWGESEDSAA  173 (304)
T ss_dssp             --SEEEECSCCGGGCEEEEEEEESSSGGGCE
T ss_pred             --cccceeeEEecCCeEEEEEEEcCCCCccc
Confidence              34666677788999999999999774433

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.81  E-value=9.8e-20  Score=114.30  Aligned_cols=96  Identities=26%  Similarity=0.418  Sum_probs=82.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.|...+.+..+.+|+.+.|.|.+. |.|.+.+.|+|++..+....++.+.... ....|.|.+++.+|+|.|+|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPADG-AEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEECCEET-TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEE-EecCCEEEEEECcccccceeeEEEeecC-ceEEEEEecCChhhCEEEEEEEE
Confidence            578888888889999999999999995 8888899999999999887776654432 35689999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCC
Q psy11132         88 NMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p  105 (243)
                      |..|.....+.|.|.++|
T Consensus        90 N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           90 NAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             ETTEEEEEEEEEEEEC--
T ss_pred             ECCCEEEEEEEEEEEcCC
Confidence            999998888999998765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=4.2e-19  Score=127.26  Aligned_cols=176  Identities=16%  Similarity=0.186  Sum_probs=108.4

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---ec-------------CCCceEEEEee-eeceEEEEe
Q psy11132         13 SPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---LD-------------NSAALSITHVD-QYNSMLVID   72 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~~-------------~~~~~~~~~~~-~~~~~l~i~   72 (243)
                      ...+..+.+.+|++++|.|.+... .+...+.|+|..  ..   +.             ...++.+.... ....+|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            334556778999999999998532 145689999843  11   10             12333332211 134689999


Q ss_pred             ecCCCCCeeEEEEEEeC--CC--cceeEEEEEEEc---------CCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEE
Q psy11132         73 SVSARHSGNYSCTVRNM--VA--EDTQVQRLIVNV---------PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTI  138 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~--~~--~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~  138 (243)
                      +++.+|+|.|.|.+.+.  ..  .......|.|..         +|.+.........+..|+.+.|.|.+.+..|. +.+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v  164 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRV  164 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEE
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEE
Confidence            99999999999999874  11  112335677762         23322222111123458899999999655574 699


Q ss_pred             EEEe-CCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        139 RWLK-DGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       139 ~W~~-~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      .|++ +|..+...........++   ..+.|.|.....  .|.|+|.|.|..+...
T Consensus       165 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          165 YWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM--GKEHRCIVKHENNKGG  218 (230)
T ss_dssp             EEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT--TSCEEEEEECSSCTTT
T ss_pred             EEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC--CCEEEEEEEECCCCCc
Confidence            9999 777665322111111121   135688877665  4999999999876543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.80  E-value=7.3e-18  Score=129.95  Aligned_cols=188  Identities=16%  Similarity=0.179  Sum_probs=131.8

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEeeeeceEEEEeecCCCCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      +.|.|..+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ++.... ......|.|.+++..|+
T Consensus        93 ~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~  170 (389)
T 2jll_A           93 MYLDIEYAPKFISNQTIYYSWEGNPINISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYS-TGRKMILEIAPTSDNDF  170 (389)
T ss_dssp             EEEEEEEEEEECCSCCEEEECTTCCEEEEECEE-EESCCEEEEEETTEESSCTTCTTEEEEE-CSSCEEEEECCCSTTSS
T ss_pred             EEEEEEeCCEEecCcceEEeccCCEEEEEEEEE-ecCCCeEEEEECCccCCcccCceEEEec-cCCEEEEEECCCChhhC
Confidence            467788889887766555788999999999995 77888999999999887644  333322 22357899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEee---cCCCCC--EEEEEeCCEecCCCCCee
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT---HGDPPL--TIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---~~~p~~--~~~W~~~~~~~~~~~~~~  154 (243)
                      |.|+|.+.|..|.....+.+.+...|..+....  .....+..+.|.|...   .+.|..  .+.|.+++...     ..
T Consensus       171 G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~--~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~-----~~  243 (389)
T 2jll_A          171 GRYNCTATNHIGTRFQEYILALADVPSSPYGVK--IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI-----WK  243 (389)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECCCCCCCEEEE--EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC-----CE
T ss_pred             EEEEEEEEcCCCcEEEEEEEEecCCCCCCcceE--EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc-----cE
Confidence            999999999999887777787766554331111  1112357788988742   122322  46777765421     11


Q ss_pred             EEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..........+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       244 ~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~  287 (389)
T 2jll_A          244 IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ  287 (389)
T ss_dssp             EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEE
Confidence            11222234678999999999999999999999876554444443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.80  E-value=9.6e-20  Score=138.36  Aligned_cols=178  Identities=16%  Similarity=0.243  Sum_probs=107.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEe-e--eeceEEEEeecCCCCCeeEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHV-D--QYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +|.+...+....+.+|+.++|.|.+.+..|. +.+.|++++..+........... +  ...+.|.|.+++.+| |.|+|
T Consensus       120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C  198 (344)
T 1za6_B          120 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  198 (344)
T ss_dssp             CCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEE
T ss_pred             CCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEE
Confidence            4555543334457899999999999754464 69999999875321100000000 0  113479999888888 99999


Q ss_pred             EEEeCCCcceeEEEEE------------------------EEcCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEE
Q psy11132         85 TVRNMVAEDTQVQRLI------------------------VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIR  139 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~------------------------v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~  139 (243)
                      .+.|..+.......+.                        +..+|.+...... .....|..+.|.|.+.+..| .+.+.
T Consensus       199 ~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~-~~~~~~~~~~L~C~~~g~~P~~~~v~  277 (344)
T 1za6_B          199 NVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPS-RDELTKNQVSLTCLVKGFYPSDIAVE  277 (344)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCC-GGGGGSSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCC-hHhccCCcEEEEEEEeeEECCCeEEE
Confidence            9999877533222221                        1233443333222 11234667999999953345 47999


Q ss_pred             EEeCCEecCCCCCeeEE-eeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        140 WLKDGKPLSPRFPVNVS-DLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       140 W~~~~~~~~~~~~~~~~-~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      |+++|..+......... ..++.   .+.|.|.....+|.|.|+|.|.|....
T Consensus       278 W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          278 WESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             EEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence            99999887643211111 11111   244666665567799999999997654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.79  E-value=4.5e-19  Score=128.95  Aligned_cols=171  Identities=16%  Similarity=0.242  Sum_probs=106.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------cCC---------C-ceEEEEeeeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------DNS---------A-ALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------~~~---------~-~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +..+.+.+|++++|.|.+. +.+.+.+.|+|.  +...      ...         . ++....... .. |.|.+++.+
T Consensus         8 p~~v~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~-L~I~~v~~~   84 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILK-NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD-TE-LRLQVANMS   84 (253)
T ss_dssp             CSEEEEESSCCEEEEEECS-CTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSS-SC-CEEEEESCS
T ss_pred             CCeEEEeCCCcEEEEEEeC-CCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCC-Ce-EEEccCChh
Confidence            4456788999999999984 667779999982  1111      000         0 222221111 12 999999999


Q ss_pred             CCeeEEEEEEeCCC------cceeEEEEEEEc------CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCC
Q psy11132         78 HSGNYSCTVRNMVA------EDTQVQRLIVNV------PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDG  144 (243)
Q Consensus        78 d~G~Y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~  144 (243)
                      |+|.|.|.+.+..+      .......|.|..      +|.+.........+..|+.+.|.|.+.+..|++ .+.|+++|
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  164 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence            99999999986543      112234566653      233222211111223468999999996547766 99999999


Q ss_pred             EecCCCCCeeEEe-------ecc---ceeEEEEeecCCCC-CeeEEEEEEccCcce
Q psy11132        145 KPLSPRFPVNVSD-------LDS---FSSLLSINSVSAAH-SGEYTCVASNTAAQA  189 (243)
Q Consensus       145 ~~~~~~~~~~~~~-------~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  189 (243)
                      ..+..........       .++   ..+.|.|.....+| .|.|+|.|.|.....
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~  220 (253)
T 3to4_D          165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (253)
T ss_dssp             EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence            9886532211000       111   12567788777777 779999999975443

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.78  E-value=1.2e-18  Score=126.18  Aligned_cols=180  Identities=16%  Similarity=0.227  Sum_probs=108.3

Q ss_pred             CCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e--------------cCCCceEEEEee-eeceEEEEeec
Q psy11132         16 NPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L--------------DNSAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~--------------~~~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      +....+.+|++++|.|.+... .+...+.|++..  ..   +              ....++.+.... ....+|+|.++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            345678899999999999632 234589999742  11   1              012344443322 33568999999


Q ss_pred             CCCCCeeEEEEEEeCC----------------------CcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEE
Q psy11132         75 SARHSGNYSCTVRNMV----------------------AEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICG  128 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~  128 (243)
                      +.+|+|.|.|.+.+..                      ........|.|..    +|.+...... ..+..|+.+.|.|.
T Consensus        86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~  164 (248)
T 3u2s_H           86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCL  164 (248)
T ss_dssp             CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------CEEEEEEE
T ss_pred             CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC-ccccCCCcEEEEEE
Confidence            9999999999998641                      1112234566652    2222222222 33457999999999


Q ss_pred             eecCCC-CCEEEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        129 VTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       129 ~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      +.+..| ++.+.|++++..+...........++   ..+.|.|.....++ |.|+|.|.|..+.......+.+
T Consensus       165 ~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          165 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            965566 67899999886432111001111111   13568888877788 9999999998876655544443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.78  E-value=1.3e-17  Score=124.48  Aligned_cols=184  Identities=15%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             eEEEecCCCccCC-----CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEee-cCC
Q psy11132          3 VIFSTVPPKLSPT-----NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS-VSA   76 (243)
Q Consensus         3 ~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~   76 (243)
                      .|.|..+|.+...     +....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++...... ....|.|.+ ++.
T Consensus        93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~  170 (305)
T 2nzi_A           93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVER  170 (305)
T ss_dssp             EEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEE-EESCCEEEEEESSSBCCSSSSCEEEECS-SEEEEEETTCCCS
T ss_pred             EEEEecCCccCCCccccccccEEecCCCEEEEEEEEC-CCCCCEEEEEECCEECCCCCcEEEEEcC-CceEEEEecCCcc
Confidence            4556665554332     2456688899999999995 7788899999999988776665544322 257899999 999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeE
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNV  155 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~  155 (243)
                      .|.|.|+|.+.|..|.....+.|.|...|..+....  .....++.+.|.|..........+.+|. ...... ......
T Consensus       171 ~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~--~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~-~~~w~~  247 (305)
T 2nzi_A          171 KDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK--VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATT-AERWLR  247 (305)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE--EESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETT-SCCEEE
T ss_pred             CccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce--eeeccCCEEEEEEcCCccCCCCceeEEEEEEecCC-CCccEE
Confidence            999999999999999988889999987765443211  1223567788888652111111122221 111111 111111


Q ss_pred             EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      .. ......+.|.++...+.|.|+|.|.|..|....+
T Consensus       248 ~~-~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          248 VG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EE-EESSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             Cc-cccCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            11 1114678999999999999999999999876544

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.78  E-value=2.2e-18  Score=123.67  Aligned_cols=178  Identities=16%  Similarity=0.282  Sum_probs=105.2

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCcee--EEEECC--e---ee-----cC-----------CCceEEEEee-eeceEEEEe
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTI--KWLKDG--R---YL-----DN-----------SAALSITHVD-QYNSMLVID   72 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v--~W~~~~--~---~~-----~~-----------~~~~~~~~~~-~~~~~l~i~   72 (243)
                      ...+.+|++++|.|.+.... ....+  .|++..  .   .+     ..           ..++.+.... ....+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT   88 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence            34588999999999986321 12344  999842  1   11     00           1244333221 235689999


Q ss_pred             ecCCCCCeeEEEEEEeCC--------CcceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEE
Q psy11132         73 SVSARHSGNYSCTVRNMV--------AEDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIR  139 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~  139 (243)
                      +++.+|+|.|.|.+.+..        ........|.|..    +|.+...... ..+..|+.+.|.|.+..+.| +..+.
T Consensus        89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~~~~v~  167 (232)
T 3qhz_H           89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVS  167 (232)
T ss_dssp             SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCEEE
T ss_pred             cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEeccc-ccccCCCcEEEEEEEeeEeCCCeEEE
Confidence            999999999999998652        1122334566652    2222211222 34567999999999965455 45789


Q ss_pred             EEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132        140 WLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       140 W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |++++..+...........++   ..+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       168 W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          168 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            999886432111111111111   13568888888888 9999999998877665555443

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.77  E-value=3.2e-18  Score=123.35  Aligned_cols=177  Identities=18%  Similarity=0.266  Sum_probs=108.1

Q ss_pred             CCcccccCCeEEEEEEeeCCCC----CceeEEEECC--ee---e---c----------------CCCceEEEEe-eeece
Q psy11132         17 PERTLNVGERASLICSITKGDI----PLTIKWLKDG--RY---L---D----------------NSAALSITHV-DQYNS   67 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~---~---~----------------~~~~~~~~~~-~~~~~   67 (243)
                      ....+.+|++++|.|.+. +.+    ...+.|++..  ..   +   .                ...++.+... .....
T Consensus         8 ~~~~v~~G~~v~L~C~~~-~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVS-GDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             SCSEECTTSCEEEEEEEE-SSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCEEEcCCCCEEEEEEEc-CCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            345688999999999996 333    4589999842  11   1   1                0123333322 12346


Q ss_pred             EEEEeecCCCCCeeEEEEEEeCCC-------------cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEee
Q psy11132         68 MLVIDSVSARHSGNYSCTVRNMVA-------------EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVT  130 (243)
Q Consensus        68 ~l~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~  130 (243)
                      +|.|.+++.+|+|.|.|.+.+..+             .......|.|..    +|.+.... +...+..|+.+.|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEEC-CCCCC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEEC-CChhhccCCcEEEEEEEe
Confidence            799999999999999999986531             112223556642    22222122 223456799999999996


Q ss_pred             cCCCC-CEEEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        131 HGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       131 ~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      ...|. ..+.|++++..+...........++   ..+.|.|.....+| |.|+|.|.|..+.......+.
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            54663 4689999886442111111111111   13568888888888 999999999887665554443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.77  E-value=2.5e-18  Score=106.55  Aligned_cols=93  Identities=20%  Similarity=0.456  Sum_probs=78.4

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+.... ...+|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIENTD-DLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEE-EESCCEEEEEETTEECCTTGGGTEEEEECS-SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEE-EecCCEEEEEECceEeeeeccceeeeeccc-ceEEEEEcCCCccCCEEEEEE
Confidence            478888888889999999999999995 88889999999999987644  34433322 357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~  102 (243)
                      |.|..|..+..+.|.|.
T Consensus        82 a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999998888888876

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.76  E-value=1.4e-19  Score=128.27  Aligned_cols=178  Identities=17%  Similarity=0.256  Sum_probs=108.9

Q ss_pred             CCCccC-CCCCcccccCCeEEEEEEeeCCCC--CceeEEEECCeeecCCC-ceEE-E--EeeeeceEEEEeecCCCCCee
Q psy11132          9 PPKLSP-TNPERTLNVGERASLICSITKGDI--PLTIKWLKDGRYLDNSA-ALSI-T--HVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~~-~~~~-~--~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+.. .+....+.+|+.++|.|.+.+..+  ++.+.|  ++..+.... .... .  ..-.....|.|.+++.+|.|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            455543 366677899999999999964334  268999  443332110 0000 0  000124578889999999999


Q ss_pred             EEEEEEeCCCcceeEEEEE---EEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCe---e
Q psy11132         82 YSCTVRNMVAEDTQVQRLI---VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV---N  154 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~---~  154 (243)
                      |+|.+.+..+.......+.   +..+|.+.........+..|+.+.|.|.+.+.+|+ +.+.|+++|..+......   .
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  160 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWAS  160 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCC
T ss_pred             EEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCC
Confidence            9999998766433333332   23455554433332346789999999999644564 599999999987654211   1


Q ss_pred             EEe---eccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        155 VSD---LDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       155 ~~~---~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ...   .++.   .+.|.+.....++.|.|+|.|.|....
T Consensus       161 ~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          161 RQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             EECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             cccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            111   1111   233455444345589999999997653

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.76  E-value=1.4e-18  Score=124.85  Aligned_cols=178  Identities=15%  Similarity=0.233  Sum_probs=106.7

Q ss_pred             CCCccCC-CCCcc-cccCCeEEEEEEeeCCC--C-CceeEEEECCeeecCCCceEEEE--ee--eeceEEEEeecCCCCC
Q psy11132          9 PPKLSPT-NPERT-LNVGERASLICSITKGD--I-PLTIKWLKDGRYLDNSAALSITH--VD--QYNSMLVIDSVSARHS   79 (243)
Q Consensus         9 ~p~~~~~-~~~~~-~~~g~~~~l~C~~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~--~~--~~~~~l~i~~~~~~d~   79 (243)
                      +|.+.+. +.... +..|+.++|.|.+.+..  | ...++|+++|..+..........  ..  ...+.|.|.....+|.
T Consensus        22 ~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~  101 (240)
T 4acp_A           22 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG  101 (240)
T ss_dssp             -CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHT
T ss_pred             CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCC
Confidence            4544433 33444 55799999999997555  4 45899999999875432111000  00  1135688877777789


Q ss_pred             eeEEEEEEeCCCcceeEEEEE----EEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCee
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLI----VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN  154 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~  154 (243)
                      |.|+|.+.+..+.......+.    +..+|.+...... .....|+.+.|.|.+.+.+|. ..+.|+++|..+.......
T Consensus       102 ~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~-~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~  180 (240)
T 4acp_A          102 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS-RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATP  180 (240)
T ss_dssp             CCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC-GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             CEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC-hHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccC
Confidence            999999998776432222222    2345555444333 222348999999999644665 4899999999865321111


Q ss_pred             EE-eeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        155 VS-DLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       155 ~~-~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      .. ..++.   .+.|.+.....++.|.|+|.|.+..-
T Consensus       181 ~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          181 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            11 11111   24566666555678999999999764

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.76  E-value=2.6e-17  Score=117.93  Aligned_cols=177  Identities=16%  Similarity=0.284  Sum_probs=109.9

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e---c-----------CCCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L---D-----------NSAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...+.+|++++|.|.+... .....+.|||..  ..   +   .           ...++.+.... ....+|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            4568899999999998631 234589999732  11   1   0           12344433222 2346799999999


Q ss_pred             CCCeeEEEEEEeCCC------c--ceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeC
Q psy11132         77 RHSGNYSCTVRNMVA------E--DTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKD  143 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~------~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~  143 (243)
                      +|+|.|.|.+.+..+      .  ......|.|..    +|.+.... +...+..|+.+.|.|.+.+..| ++.+.|  +
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~  165 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPVTVSW--N  165 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEC-CCCCCCTTCEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecC-CCccccCCCCEEEEEEEEeEECCCEEEEE--C
Confidence            999999999987531      1  12334566642    22222112 2234568999999999965556 568999  5


Q ss_pred             CEecCCCCCe--eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        144 GKPLSPRFPV--NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       144 ~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +..+......  .....++   ..+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            5444321110  0011111   13578899888889 99999999988776655555544

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.76  E-value=2.2e-17  Score=105.11  Aligned_cols=101  Identities=22%  Similarity=0.371  Sum_probs=85.9

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.+
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a   82 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQEHCGCYTLLV   82 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEE-SSSSCEEEEEESSSBCCCSSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEE-cCCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEECCCChhcCEEEEEEE
Confidence            3578888888889999999999999996 788889999999999887766665533 23578999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCCccc
Q psy11132         87 RNMVAEDTQVQRLIVNVPPKIES  109 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~~~~  109 (243)
                      .|..+.....+.|.|...|..+.
T Consensus        83 ~N~~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           83 ENKLGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             ECSSCEEECCEEEEEECSCSCCC
T ss_pred             EECCCcEEEEEEEEEECCCCCCC
Confidence            99999888889999988776543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.76  E-value=8.7e-19  Score=128.80  Aligned_cols=188  Identities=19%  Similarity=0.243  Sum_probs=64.3

Q ss_pred             eeEEEecCCCcc-CCCCCcccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132          2 LVIFSTVPPKLS-PTNPERTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus         2 ~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      +.|.|+.+|... +......+.+|+.++|+|.+.++.|..  .|+|+|++..+......    .......|.+...+.++
T Consensus        78 v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~----~~~~~~~l~~~~~~~D~  153 (291)
T 1mq8_A           78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV----GEPAEVTTTVLVRRDHH  153 (291)
T ss_dssp             CEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC----BTTEEEEEECCCSSSCS
T ss_pred             EEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC----CCCceEEEEeeeeeccC
Confidence            467888777543 334445588999999999997666654  68999999877543211    11123456666555555


Q ss_pred             CeeEEEEEEeCCCc--------ceeEEEEEEEcCCCccc-cccCCCCCCCCCcEEEEEEeecCCCCC---EEEEEeCCEe
Q psy11132         79 SGNYSCTVRNMVAE--------DTQVQRLIVNVPPKIES-FAFPFDGLPEGARTRVICGVTHGDPPL---TIRWLKDGKP  146 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~--------~~~~~~l~v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~  146 (243)
                      .+.|+|.|.+..+.        .+....|.|.++|.... ...+ ..+.+|+.+.|.|.+ .|.+++   .+.|+++|..
T Consensus       154 g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p-~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~g~~  231 (291)
T 1mq8_A          154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP-RVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQR  231 (291)
T ss_dssp             SCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------
T ss_pred             CceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCC-cCccCCCeEEEEEEc-CCCCCCcccEEEEEECCEe
Confidence            56999999986442        34556788887754322 1112 356789999999999 565443   6999999998


Q ss_pred             cCCCCCeeEEeeccceeEEEEeecCC--CCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132        147 LSPRFPVNVSDLDSFSSLLSINSVSA--AHSGEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      +......   ..+.....+.+ .+..  ++.+.|+|.|.+.....+....|.|.+
T Consensus       232 l~~~~~~---~g~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          232 LNPTVTY---GNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             -------------------------------------------------------
T ss_pred             cCceeee---cCCeEEEEEec-ceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence            8753211   11111111221 1123  335688899988665566666777763

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.75  E-value=4.8e-17  Score=111.07  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=107.7

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..++...+.+|+++.|+|.+. ...+..+.|... ++....       ..+.....|.|.+++. | |.|.|.+......
T Consensus         4 v~P~~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~-------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~   73 (185)
T 1iam_A            4 VSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELL-------LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ   73 (185)
T ss_dssp             EESSEEEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEEC-------SSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred             EECCCcEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEe-------ccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence            345566799999999999984 333334777531 111110       0011135688999974 4 9999999765556


Q ss_pred             ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEEeeccceeEEEEeec
Q psy11132         93 DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus        93 ~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  170 (243)
                      ....+.|.|..+|...........+.+|+.++|.|.+.++.|..  .+.|++++..+.....    .....+.+|.+...
T Consensus        74 ~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~----~~~~~~~tl~~~~~  149 (185)
T 1iam_A           74 STAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGEPAEVTTTVLVR  149 (185)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----CTTTEEEEEEEECC
T ss_pred             eEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC----CCccccEEEEEece
Confidence            77888999998887655544434478999999999997667764  5899999988764210    01112345666544


Q ss_pred             CCCCCeeEEEEEEccCcce
Q psy11132        171 SAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+|...|+|.|.|..+..
T Consensus       150 reD~g~~~sC~A~~~l~~~  168 (185)
T 1iam_A          150 RDHHGAQFSCRTELDLRPQ  168 (185)
T ss_dssp             SSCSSCEEEEEEEEECGGG
T ss_pred             eccCCCeEEEEEEecCccc
Confidence            4444449999999988744

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=127.60  Aligned_cols=167  Identities=13%  Similarity=0.202  Sum_probs=107.2

Q ss_pred             cccCCeEEEEEEeeCCC--C-CceeEEEECCeeecCCCc---eEEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         21 LNVGERASLICSITKGD--I-PLTIKWLKDGRYLDNSAA---LSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~--~-~~~v~W~~~~~~~~~~~~---~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      +.+|+.++|.|.+.+..  | ...|.|++++..+.....   .... ..-.....|.|..++.+|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            77899999999996442  3 247999999866532110   0000 001124579999999999999999999876643


Q ss_pred             eeEEEE----EEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeE-Eeecc---ceeE
Q psy11132         94 TQVQRL----IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNV-SDLDS---FSSL  164 (243)
Q Consensus        94 ~~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~-~~~~~---~~~~  164 (243)
                      .....+    .+..+|.+...+.. .....|+.+.|.|.+.+.+| .+.++|+++|..+........ ...++   ..+.
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~  338 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK  338 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCC-HHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence            322233    33445555444333 23345899999999964355 579999999988754222111 11111   1345


Q ss_pred             EEEeecCCCCCeeEEEEEEccCcc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      |.+.....+|.|.|+|.|.|....
T Consensus       339 L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          339 LNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             EEEcHHHhCCCCcEEEEEEeCCCC
Confidence            777766677899999999997643

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.75  E-value=5.6e-18  Score=106.23  Aligned_cols=82  Identities=26%  Similarity=0.436  Sum_probs=71.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....++.+.. +.....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        23 ~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  100 (107)
T 3knb_B           23 VRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPA-DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAA  100 (107)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCE-ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEee-cCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEE
Confidence            557789999999999 599999999999999998776655433 334678999999999999999999999999999999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus       101 l~V~  104 (107)
T 3knb_B          101 VTVL  104 (107)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9988

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.74  E-value=1.5e-17  Score=120.96  Aligned_cols=156  Identities=17%  Similarity=0.170  Sum_probs=84.1

Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC-----CCEEEEEeCC--Ee
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-----PLTIRWLKDG--KP  146 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~--~~  146 (243)
                      ++..|+|.|+|.|.   +.....+.+.+..++.+...+ ....+.+|+++.|.|.+ .+.|     .+.+.|++++  ..
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~~~~p-~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~   85 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVMTQSP-LTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLLQRPGQS   85 (254)
T ss_dssp             ------------------------------CCCEEEEC-SEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEEECTTSC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeeceeEEeCC-ceEEecCCCcEEEEeec-cCcccccCCCCceEEEEeCCCCC
Confidence            67899999999998   333333334443344443322 22567899999999999 5766     3899999743  21


Q ss_pred             c----------C--CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEEEEeecCCCCCeeeeec-
Q psy11132        147 L----------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKGNLNRLPPSYTLVF-  212 (243)
Q Consensus       147 ~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~~-  212 (243)
                      +          .  ...+..... ......|.|.+++.+|+|.|.|.|.|..+... ....+.|..  ...+|.+.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--~~~~P~v~~~~~  162 (254)
T 2c1o_A           86 PKRLIYLVSKLDSGDPDRFTGSG-SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR--ADAAPTVSIFPP  162 (254)
T ss_dssp             CEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC--CCBCCEEEEECC
T ss_pred             ceEEEEeccccCCCccceEEEec-CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC--CCCCCeeEeecC
Confidence            1          1  112222222 33456899999999999999999999866432 234555542  12356665432 


Q ss_pred             ------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        213 ------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       213 ------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                            ++.+.+.|....+ +   .+.|+++|..+
T Consensus       163 ~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  197 (254)
T 2c1o_A          163 SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  197 (254)
T ss_dssp             CHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEE
T ss_pred             ChhhccCCcEEEEEEEecccCCCcEEEEEECCCcc
Confidence                  5678899988663 2   48999999765

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=103.55  Aligned_cols=97  Identities=19%  Similarity=0.331  Sum_probs=80.2

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECE-EESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEE-eeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            4678888888888899999999999995 778889999999998877654433333333468999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcC
Q psy11132         87 RNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~  104 (243)
                      .|..|.....+.|.|...
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEEec
Confidence            999998888888888754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.73  E-value=7.9e-17  Score=102.71  Aligned_cols=101  Identities=19%  Similarity=0.298  Sum_probs=84.3

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      ...+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+........+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~-g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBC-CBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEe-ccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            34688999888899999999999999995 788889999999998874 4455554433334589999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCCc
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      .+.|..|.....+.|.|..+|..
T Consensus        91 ~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEEETTEEEEEEEEEEEECCSCC
T ss_pred             EEEcCCCeEEEEEEEEEeCCCCC
Confidence            99999998888899999877654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.73  E-value=3.6e-17  Score=101.35  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=80.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+............|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEE-EeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            467777777788899999999999996 7788899999999999877666554444446789999999999999999999


Q ss_pred             eCCCcceeEEEEEEEc
Q psy11132         88 NMVAEDTQVQRLIVNV  103 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~  103 (243)
                      |..|.....+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQA   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCcEEEEEEEEEec
Confidence            9999888888888764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.3e-17  Score=100.95  Aligned_cols=93  Identities=23%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+.+..+.+|+.+.|.|.+   .|.+.+.|+|+|..+....++.+.... ....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKG-RIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECS-SEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeC-CEEEEEECCCChhhCEEEEEEEc
Confidence            46788888888999999999999998   566789999999999887777665433 24689999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCC
Q psy11132         88 NMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~  106 (243)
                      |.  ..+..+.|.|.++|.
T Consensus        82 N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           82 AY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             SS--CCCEEEEEEEECCSC
T ss_pred             CC--CeeEEEEEEEeCCCC
Confidence            87  556778888887764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.72  E-value=9.6e-17  Score=116.81  Aligned_cols=178  Identities=18%  Similarity=0.282  Sum_probs=106.6

Q ss_pred             CCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e--------------cCCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L--------------DNSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~--------------~~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+... .....+.|+|..  ..   +              ....++.+.... ....+|+|.+++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            34668899999999998632 224589999732  11   1              012344443222 235679999999


Q ss_pred             CCCCeeEEEEEEeCCC-----------cceeEEEEEEEcC----CCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEE
Q psy11132         76 ARHSGNYSCTVRNMVA-----------EDTQVQRLIVNVP----PKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIR  139 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~~-----------~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~  139 (243)
                      .+|+|.|.|.+.+..+           .......|.|...    |.+...... ..+..|+.+.|.|.+....| ++.+.
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~~~~p~~~~v~  189 (256)
T 3sob_H          111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVS  189 (256)
T ss_dssp             GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC------TTEEEEEEEEEEEBSSCCEEE
T ss_pred             cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCC-cccccCCcEEEEEEEEEEECCCeEEE
Confidence            9999999999986431           1122345666532    222211211 34568999999999965566 56899


Q ss_pred             EEeCCEecCCCCCe--eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        140 WLKDGKPLSPRFPV--NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       140 W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |  ++..+......  .....++   ..+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            9  44443321110  0011111   13568899888889 99999999988766555554433

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.72  E-value=1.8e-16  Score=112.05  Aligned_cols=122  Identities=23%  Similarity=0.372  Sum_probs=91.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC-CCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEccCcc-eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASNTAAQ-ARY  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~-~~~  191 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+. ................|.|.++.. +|+|.|+|.|.|..|. ...
T Consensus        16 ~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~   94 (212)
T 2yd1_A           16 QGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSA   94 (212)
T ss_dssp             EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEE
T ss_pred             eEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEe
Confidence            557789999999999 588999999999999987 333344444444457899999999 9999999999999988 677


Q ss_pred             eEEEEEEeecC--CCCCee-------eeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        192 SSKLQVKGNLN--RLPPSY-------TLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       192 ~~~l~v~~~~~--~~~p~~-------~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .+.|.|.....  ..+|.+       .+..++.+.+.|.....+  .+.|+++|..+
T Consensus        95 ~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~  151 (212)
T 2yd1_A           95 DATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV  151 (212)
T ss_dssp             EEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEEC
T ss_pred             eEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEc
Confidence            78888874321  112443       334577788888775544  79999998654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.72  E-value=5.5e-17  Score=114.74  Aligned_cols=123  Identities=24%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec-CCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-SAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.................|.|.++ ..+|+|.|+|.|.|..|.....+
T Consensus        16 ~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~   94 (212)
T 2yd6_A           16 QTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST   94 (212)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEE
T ss_pred             eEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEE
Confidence            456789999999999 4889999999999999876544333333344678999999 49999999999999999888888


Q ss_pred             EEEEEeec--CCCCCee-------eeeccceeeeccCcccc--cccceEEeCCeeE
Q psy11132        194 KLQVKGNL--NRLPPSY-------TLVFSQASYMSTSYYSF--EQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~--~~~~p~~-------~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~~  238 (243)
                      .|.|....  +..+|.+       .+..+..+.+.|...+.  +.+.|+++|..+.
T Consensus        95 ~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~  150 (212)
T 2yd6_A           95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD  150 (212)
T ss_dssp             EEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC-
T ss_pred             EEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCcccc
Confidence            88887432  1122333       34456677888876554  4899999986653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.72  E-value=3e-17  Score=101.65  Aligned_cols=83  Identities=18%  Similarity=0.291  Sum_probs=69.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCee-EEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+....... ........+.|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        15 ~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T 3knb_A           15 ISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV   93 (100)
T ss_dssp             EEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence            457789999999999 599999999999999987654321 222333457899999999999999999999999999899


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        94 ~l~V~   98 (100)
T 3knb_A           94 NIHIR   98 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88886

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.71  E-value=1.5e-16  Score=113.58  Aligned_cols=171  Identities=17%  Similarity=0.273  Sum_probs=104.1

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e---c-----------CCCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L---D-----------NSAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...+.+|++++|.|.+... .+...+.|+|..  ..   +   .           ...++.+.... ....+|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            4568899999999998632 234589999842  11   1   0           11344443222 2356799999999


Q ss_pred             CCCeeEEEEEEeCCC---------cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEe
Q psy11132         77 RHSGNYSCTVRNMVA---------EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLK  142 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~---------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~  142 (243)
                      +|+|.|.|.+.+..+         .-.....|.|..    +|.+...... ..+..|+.+.|.|.+....| ++.+.|  
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~v~W--  165 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSW--  165 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEE-ECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCc-ccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence            999999999976421         111223556643    2222211111 34568999999999975566 678999  


Q ss_pred             CCEecCCCCCe--eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        143 DGKPLSPRFPV--NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       143 ~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ++..+......  .....++   ..+.|.|.....+| |.|+|.|.|..+.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          166 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            44333211100  0111111   13568898888888 99999999987765433

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.71  E-value=2.6e-17  Score=102.78  Aligned_cols=98  Identities=18%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             EEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          5 FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         5 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .+..+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNT-SGVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             TTCEEEEEEECCCCEEEETTCCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEE-TTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCCCEEEeCCcceEEeCCCeEEEEEEEE-ecCCCEEEEEECCEECCCCCCEEEEEC-CCEEEEEEcCCCcccCEEEEE
Confidence            345678888778888999999999999995 788889999999999987776655432 234689999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcC
Q psy11132         85 TVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~  104 (243)
                      .+.|..|..+..+.|.|...
T Consensus        82 ~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           82 VCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEEeCCCcEEEEEEEEEECC
Confidence            99999998888888888754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=9.3e-17  Score=101.48  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=82.6

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+.........|.|.+++.+|+|.|+|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBC-CSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEE-ecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            4688888888888999999999999995 788889999999998875 44555444333345899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCc
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      +.|..+.....+.|.|..+|..
T Consensus        85 a~N~~g~~~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           85 AANPQGRISCTGRLMVQAVNSG  106 (110)
T ss_dssp             EECTTCCEEECCCEEEECCSCC
T ss_pred             EEECCCeEEEEEEEEEECCCCC
Confidence            9999998888888888876643

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.71  E-value=2.2e-16  Score=110.22  Aligned_cols=122  Identities=14%  Similarity=0.219  Sum_probs=93.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC-CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... .............|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        14 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~   92 (197)
T 2j8h_A           14 LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA   92 (197)
T ss_dssp             EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             cEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEE
Confidence            556789999999999 588999999999999887543 333333344456899999999999999999999999888888


Q ss_pred             EEEEEeecCCCC-------CeeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        194 KLQVKGNLNRLP-------PSYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .|.|...+....       ....+..+..+.+.|.....+  .+.|+++|..+
T Consensus        93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~  145 (197)
T 2j8h_A           93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLI  145 (197)
T ss_dssp             EEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEE
T ss_pred             EEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEe
Confidence            888874332121       123455677888889776554  89999998765

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=1.1e-16  Score=112.65  Aligned_cols=168  Identities=18%  Similarity=0.234  Sum_probs=100.4

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---e-------cCCCceEEEEe--eeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---L-------DNSAALSITHV--DQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~-------~~~~~~~~~~~--~~~~~~l~i~~~~~~d~   79 (243)
                      ..+..+.+.+|++++|.|.+. +.+ ..+.|+|..  ..   +       ....++.+...  .....+|+|.+++.+|+
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~-~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            6 QSPSALSLHEGTDSALRCNFT-TTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             ESCSEEEEETTCCEEEEEEES-SCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             ECCCeEEEccCCcEEEEEEEe-CCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            345567799999999999985 433 379999853  11   1       01234443322  12346899999999999


Q ss_pred             eeEEEEEEeCCC---------c--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEec
Q psy11132         80 GNYSCTVRNMVA---------E--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL  147 (243)
Q Consensus        80 G~Y~C~~~~~~~---------~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~  147 (243)
                      |.|.|.+.+..+         .  ......|.|.........+  ...+.. ..+.|.|.+.+..|. +.+.|+++ ..+
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P--~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~l  159 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP--SVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KKI  159 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC--EEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SEE
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC--eEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-Ccc
Confidence            999999987632         1  1133567776422111110  011111 136899999655664 79999998 655


Q ss_pred             CCCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEccCccee
Q psy11132        148 SPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~  190 (243)
                      ...........+   +.+.+..... ++.|.|+|.|.|..+...
T Consensus       160 ~~~~~~~~~~~~---g~y~~~~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          160 VEFDPAIVISPS---GKYSAVKLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             EECCCEEEECTT---SSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred             cCCccceEEcCC---CcEEEEEeecccCCCcEEEEEEECCccEe
Confidence            432221111111   2223323333 678999999999876543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.70  E-value=4.8e-17  Score=102.46  Aligned_cols=102  Identities=22%  Similarity=0.424  Sum_probs=70.9

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+....   .....|.|.+++.+|+|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK---DGNRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC-----CCEEEEESSSBCCCBTTEEEE---TTTTEEEECSCCGGGCEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECc-CcCCCeEEEEECCeEcccCCCeEEe---CCCcEEEEeecCcccCEE
Confidence            466778899999888889999999999999994 7788899999999888765554332   225789999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |+|.+.|..|.....+.|.|..+|..
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEGAQEK  104 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC----
T ss_pred             EEEEEEeCCCceEEEEEEEEeCCCcc
Confidence            99999999999888899999876643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.70  E-value=5.3e-17  Score=108.95  Aligned_cols=105  Identities=23%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             EEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          5 FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         5 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .+..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.........|.|.+++..|+|.|+|
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEE-EecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            445678888887888999999999999995 7788899999999999877776655433335789999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCCcccc
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPKIESF  110 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~~~~~  110 (243)
                      .+.|..|.....+.|.|..+|.+...
T Consensus       116 ~a~N~~G~~~~~~~l~V~~~p~~~~~  141 (154)
T 1fhg_A          116 KAVNSLGEATCTAELLVETMGKEGEG  141 (154)
T ss_dssp             EEEETTEEEEEEEEEEEECC------
T ss_pred             EEEECCCeEEEEEEEEEeCcCcCCCC
Confidence            99999999888899999887766543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=99.03  Aligned_cols=95  Identities=16%  Similarity=0.250  Sum_probs=77.1

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEE-EESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEE-EcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            467777777788899999999999995 7788899999999988765443333323334589999999999999999999


Q ss_pred             eCCCcceeEEEEEEEc
Q psy11132         88 NMVAEDTQVQRLIVNV  103 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~  103 (243)
                      |..+.....+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           83 NEYGARQCEARLEVRG   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCceeEEEEEEEEC
Confidence            9999888888888753

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.69  E-value=6.6e-16  Score=96.20  Aligned_cols=97  Identities=14%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe----eeeceEEEEeecCCCCCee
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV----DQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~   81 (243)
                      |..||.+.....   ...|+.+.|.|.+. |.|.+.+.|+++|..+....+......    ....+.|.|.+++.+|+|.
T Consensus         1 V~~pP~i~~~~~---~~~~~~~~~~c~v~-G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   76 (103)
T 1wwb_X            1 VHFAPTITFLES---PTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEE-CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CCCCCEEEeccC---ceECcEEEEEEEEE-EeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEE
Confidence            356888753322   34688999999995 899999999999999987655322211    1224569999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      |+|.|.|..|.....+.|.|..+|.
T Consensus        77 Y~C~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           77 YTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEEEEeCCCcEeEEEEEEECCCCC
Confidence            9999999999999999988877664

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3.8e-17  Score=103.32  Aligned_cols=99  Identities=19%  Similarity=0.358  Sum_probs=82.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+....+.+|+.++|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|+|.|+|.+.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEE-CSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEE-EcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            578888888888999999999999995 7888899999999888765554443333335689999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCCc
Q psy11132         88 NMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |..+.....+.|.|..+|..
T Consensus        87 n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             CSSCEEEECCEEEEECCCCS
T ss_pred             CCCCEEEEEEEEEEeCCCCC
Confidence            99998888889999877654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.68  E-value=2.6e-16  Score=109.80  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=94.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus        17 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~   94 (197)
T 3lcy_A           17 VTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSS-DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSK   94 (197)
T ss_dssp             EEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEE-SSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEe-CCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEE
Confidence            456789999999999 578889999999999887665544432 334568999999999999999999999998888888


Q ss_pred             EEEEeecCC-----CCCeeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        195 LQVKGNLNR-----LPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       195 l~v~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      +.|...+..     .+....+..+..+.+.|.....+  .+.|+++|..+
T Consensus        95 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~  144 (197)
T 3lcy_A           95 LLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL  144 (197)
T ss_dssp             EEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             EEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEEC
Confidence            877643321     22445567788889999876554  89999988654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.68  E-value=1.8e-16  Score=97.04  Aligned_cols=90  Identities=21%  Similarity=0.322  Sum_probs=73.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++  ..+.......   .......|.|.+++.+|+|.|+|.
T Consensus         1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            1 LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVD---AKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCCEECCCCCEEEECTTBCCEEEEEEE-CCSSCEEEEECSTTTCBCSTTSEEE---EETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCCeEEcCCCceEEeCCCEEEEEEEEE-EcCCCEEEEEECCCCcccCCcEEEE---ecCCEEEEEECCCChhcCEEEEEE
Confidence            367887777788899999999999995 8888999999999  7776543222   122357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIV  101 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v  101 (243)
                      |.|..|..+..+.|.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEE
Confidence            9999998887777776

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-16  Score=100.09  Aligned_cols=97  Identities=22%  Similarity=0.393  Sum_probs=78.0

Q ss_pred             EecCCCccCC---CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          6 STVPPKLSPT---NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         6 v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      +..+|.+...   .....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. .+..+.. ......|.|.+++.+|+|.|
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~~-~~~~~~~-~~~~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDT-SRVHVRT-SDFDTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEE-EESCCEEEEEETTEECCC-SSCEEEE-CSSEEEEEESSCCTTTCEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEc-cCCCCEEEEEECCEECCC-CcEEEEE-CCCeEEEEECCCChhcCEEE
Confidence            4457777542   4567899999999999995 888889999999998863 4444332 22356799999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEcCC
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      +|.+.|..|.....+.|.|..+|
T Consensus        95 ~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           95 ELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEEEEEEEcCC
Confidence            99999999988888999998765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.68  E-value=2.9e-16  Score=97.25  Aligned_cols=94  Identities=21%  Similarity=0.350  Sum_probs=78.7

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDK-GGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEE-EESCCEEEEEETTEECCSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEE-ecCCCEEEEEECCEECcCCCCEEEEEeC-CEEEEEECCCCcccCEEEEEEE
Confidence            3567777777788899999999999995 7788899999999999877776654332 2468999999999999999999


Q ss_pred             EeCCCcceeEEEEEEE
Q psy11132         87 RNMVAEDTQVQRLIVN  102 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~  102 (243)
                      .|..+.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEEE
Confidence            9999988888888775

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3e-16  Score=97.36  Aligned_cols=94  Identities=27%  Similarity=0.398  Sum_probs=77.5

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++...    ....|.|.+++.+|+|.|+|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQ----EQGTLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEE-CSSCCEEEEEESSSEESSSCSSCEEC----TTCCEEEESCCTTTCCEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEE-EcCCCEEEEEECCEECCCCCCCEEEc----CCCEEEEccCCcccCEEEEEE
Confidence            3578888778888899999999999995 888889999999988863 2333221    245799999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCC
Q psy11132         86 VRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p  105 (243)
                      +.|..+.....+.|.|.++|
T Consensus        81 a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           81 ATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             EECSSCCCBCCEEEEEESCC
T ss_pred             EEcCCCCEEEEEEEEEecCC
Confidence            99999988888889887653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=106.52  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--eeEEeecc----c--eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSDLDS----F--SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~----~--~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+.+.|.|.+..+.|.+.+.|++++..+.....  ........    .  .+.|.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   91 (195)
T 2c5d_C           12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGH   91 (195)
T ss_dssp             EEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETT
T ss_pred             eEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCC
Confidence            56789999999999943788899999999999876532  11111110    0  4689999999999999999999988


Q ss_pred             cceee-eEEEEEEeecCCCCCee-------eeeccceeeeccCcccc--c-ccceEEeCCee
Q psy11132        187 AQARY-SSKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSF--E-QDSWMIDNENY  237 (243)
Q Consensus       187 g~~~~-~~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~--~-~~~W~~~~~~~  237 (243)
                      |.... .+.|.|.     .+|.+       .+..+..+.+.|.....  + .+.|+++|..+
T Consensus        92 ~~~~~~~~~l~V~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  148 (195)
T 2c5d_C           92 QTFVSQPGYVGLE-----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL  148 (195)
T ss_dssp             EEEECCCEEEEEC-----CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred             CceecccEEEEEe-----cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence            76543 4778877     44544       34456677788876544  4 79999998764

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.67  E-value=1.3e-14  Score=109.99  Aligned_cols=171  Identities=20%  Similarity=0.324  Sum_probs=107.1

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-------------CCceeEEEEC--Cee---e--cCC----------CceEEEE----
Q psy11132         16 NPERTLNVGERASLICSITKGD-------------IPLTIKWLKD--GRY---L--DNS----------AALSITH----   61 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-------------~~~~v~W~~~--~~~---~--~~~----------~~~~~~~----   61 (243)
                      +..+.+.+|++++|.|..+...             ....+.||+.  |+.   +  ..+          .+..+..    
T Consensus       165 ~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~  244 (401)
T 3f8u_B          165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDD  244 (401)
T ss_dssp             CSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCC
T ss_pred             CCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccc
Confidence            4456788999999999986322             1357999963  321   1  011          1111211    


Q ss_pred             ----eeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCC-cEEEEEEeecCCCC-
Q psy11132         62 ----VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA-RTRVICGVTHGDPP-  135 (243)
Q Consensus        62 ----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~-  135 (243)
                          ...++.+|+|.+++.+|.|.|.|.+.+..+.....+.|.|..+|.+...+.....+..|+ .+.|.|.+.+.+|. 
T Consensus       245 ~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~  324 (401)
T 3f8u_B          245 EPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSG  324 (401)
T ss_dssp             CSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSST
T ss_pred             ccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCC
Confidence                123478999999999999999999998777667778889988887765433312235676 79999999766776 


Q ss_pred             -CEEEEE-eCCE---ecCCCC----CeeEEeeccc---eeEEEEeecCC-CCCeeEEEEEEccC
Q psy11132        136 -LTIRWL-KDGK---PLSPRF----PVNVSDLDSF---SSLLSINSVSA-AHSGEYTCVASNTA  186 (243)
Q Consensus       136 -~~~~W~-~~~~---~~~~~~----~~~~~~~~~~---~~~l~i~~~~~-~d~g~y~C~~~n~~  186 (243)
                       +.++|+ +++.   .+....    .......++.   .+.|.+..... ++.+.|+|.+.|..
T Consensus       325 ~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          325 GLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             TCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             CcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence             799995 7752   111110    0001111111   23455544332 24459999999976

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=3.5e-16  Score=96.87  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=71.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        15 ~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   93 (99)
T 1g1c_A           15 QTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF   93 (99)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEE
Confidence            456789999999999 5889999999999999987666554444445678999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (99)
T 1g1c_A           94 LLVQ   97 (99)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8886

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.67  E-value=2.6e-15  Score=103.31  Aligned_cols=168  Identities=13%  Similarity=0.025  Sum_probs=109.2

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .+...++...+.+|+++.|+|.+. ...+..+.|...-..       .....+.....+.|.+++ +|.+.|.|.+....
T Consensus         4 ~v~v~P~~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~-------~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~   74 (196)
T 3bn3_B            4 WADLQPRVAFVERGGSLWLNCSTN-CPRPERGGLETSLRR-------NGTQRGLRWLARQLVDIR-EPETQPVCFFRCAR   74 (196)
T ss_dssp             CEEEESSEEEEETTEEEEEEEEEC-CSSCSEEEEECSSEE-------EEEEEETTEEEEEEEEEC-SSEECCEEEEEETT
T ss_pred             EEEEcCCCcEEcCCCeEEEEEeCC-CCCCCccEEEEccCC-------eeEccccCceEEEEEEEc-cCCCceEEEEECCC
Confidence            344556667799999999999984 333336777532110       001111112348889998 88888999987655


Q ss_pred             CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCE--EEEEeCCEecCCCCCeeEE-eeccceeEEEE
Q psy11132         91 AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNVS-DLDSFSSLLSI  167 (243)
Q Consensus        91 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i  167 (243)
                      ......+.|.|..+|...........+.+|+.++|.|.+.++.|...  +.|++++..+......... ........+.+
T Consensus        75 ~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~  154 (196)
T 3bn3_B           75 RTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATV  154 (196)
T ss_dssp             EEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred             CceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEE
Confidence            56778889999988876655444344789999999999976677654  7999999877532100000 00011245666


Q ss_pred             eecCCCCCeeEEEEEEccCc
Q psy11132        168 NSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       168 ~~~~~~d~g~y~C~~~n~~g  187 (243)
                      .....++...|+|.|.+..+
T Consensus       155 ~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          155 LARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             ECCGGGTTCEEEEEEEEECG
T ss_pred             eeeeccCCCeEEEEEEccCC
Confidence            54444444499999999876

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.67  E-value=7.2e-16  Score=93.99  Aligned_cols=89  Identities=17%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+.+..+.+|+.+.|.|.+. + +++.+.|+|+|..+....++.+.... ....|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~-~-~~~~v~W~k~g~~i~~~~~~~i~~~g-~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELS-E-PDVHGQWKLKGQPLAASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAA   80 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEES-S-SSCCCEEEETTEECCCBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEET
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEEC-C-CCCeEEEEECCEECcCCCCEEEEEEC-CEEEEEECCCChhhCEEEEEEEC
Confidence            467888888889999999999999995 4 44689999999999887777655432 24689999999999999999997


Q ss_pred             eCCCcceeEEEEEEEc
Q psy11132         88 NMVAEDTQVQRLIVNV  103 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~  103 (243)
                      |.    ..+..|.|.+
T Consensus        81 n~----~~sa~L~V~~   92 (93)
T 1waa_A           81 NT----KSAANLKVKE   92 (93)
T ss_dssp             TE----EEEEEEEEEC
T ss_pred             CC----cEEEEEEEEc
Confidence            63    3456666654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=97.78  Aligned_cols=97  Identities=24%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++....    ...|.|.+++.+|+|.|+|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDTGRYTCI   80 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCC-CSSCCEEEEEESSSBCCTTSTTEEEEE----TTEEEEESCCGGGCCCEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEE-ecCCCEEEEEECCEECcCCCCeEEEcc----CCEEEEccCCcCCCEEEEEE
Confidence            3578888888888999999999999994 788889999999988864 33443322    45899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCcc
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKIE  108 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~~  108 (243)
                      +.|..+.....+.|.|..++.+.
T Consensus        81 a~n~~g~~~~~~~l~V~~~~~p~  103 (118)
T 2eo9_A           81 ASTPSGEATWSAYIEVQEFGVPV  103 (118)
T ss_dssp             EECSSCEEEEECCEEEECCSCCC
T ss_pred             EEcCCCcEEEEEEEEEEeCCCCc
Confidence            99999988888888988776543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.67  E-value=1.3e-15  Score=97.02  Aligned_cols=95  Identities=19%  Similarity=0.287  Sum_probs=74.4

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      +|.+...+.. ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+... ..............|.|.+++.+|+|.|+|.|
T Consensus        15 ~p~f~~~p~~-~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           15 APMFIYKPQS-KKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CCCBSSCCCC-EEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCeEEeCCCc-EEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4555443333 567899999999999 68999999999999988753 33433333333458999999999999999999


Q ss_pred             EccCcceeeeEEEEEEee
Q psy11132        183 SNTAAQARYSSKLQVKGN  200 (243)
Q Consensus       183 ~n~~g~~~~~~~l~v~~~  200 (243)
                      .|..|.....+.|.|...
T Consensus        93 ~N~~G~~~~~~~l~V~~~  110 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTAR  110 (116)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEeCC
Confidence            999999988999998843

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.66  E-value=2.8e-16  Score=97.48  Aligned_cols=83  Identities=25%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        15 ~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2kdg_A           15 MSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ   93 (100)
T ss_dssp             EEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence            456789999999999 5889999999999998877654444433444568999999999999999999999999988899


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (100)
T 2kdg_A           94 LDVL   97 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8887

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.66  E-value=5.1e-16  Score=96.10  Aligned_cols=83  Identities=23%  Similarity=0.425  Sum_probs=69.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        15 ~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~   93 (99)
T 1u2h_A           15 QSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEAR   93 (99)
T ss_dssp             EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEE
Confidence            456789999999999 5889999999999999876655444444444568999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (99)
T 1u2h_A           94 LEVR   97 (99)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.66  E-value=2.3e-15  Score=95.96  Aligned_cols=94  Identities=14%  Similarity=0.226  Sum_probs=74.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee------eeceEEEEeecCCCCCee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD------QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~   81 (243)
                      .||.+.+..    ...+..+.|.|.+ .|.|.+.|+|+|+|..+....+.......      .....|.|.+++..|+|.
T Consensus         3 ~pP~I~l~~----~~~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A            3 MPASVQLHT----AVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCCCCCCC----CCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             CCCEEEccC----CccCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            578773322    3467899999999 59999999999999999887665433221      124679999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      |+|.|.|..|....++.|.|...|.
T Consensus        78 YtC~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           78 YTLLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             EEEEEEECCCeEEEEEEEEEEcCCC
Confidence            9999999999998888888877664

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.65  E-value=1.8e-15  Score=105.00  Aligned_cols=117  Identities=21%  Similarity=0.344  Sum_probs=87.6

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEe-CCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC-ccee
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQAR  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~  190 (243)
                      ..+.+|+.+.|.|.+. +.+ .+.+.|++ ++..+... ..............|.|.++..+|+|.|+|.+.|.. +...
T Consensus        12 ~~v~~G~~v~l~C~~~-~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   90 (191)
T 1epf_A           12 GEISVGESKFFLCQVA-GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (191)
T ss_dssp             EEEETTCCEEEEEEEC-CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             cEEcCCCCEEEEEECC-CCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence            4567899999999994 655 88999999 88777643 333333333456889999999999999999999998 4556


Q ss_pred             eeEEEEEEeecCCCCCee-------eeeccceeeeccCcccc--cccceEEeCCee
Q psy11132        191 YSSKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       191 ~~~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      ..+.+.|.     .+|.+       .+..++.+.+.|...+.  +.+.|+++|..+
T Consensus        91 ~~~~l~v~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~  141 (191)
T 1epf_A           91 ATVNVKIF-----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV  141 (191)
T ss_dssp             EEEEEEEE-----CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEG
T ss_pred             EEEEEEee-----cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEe
Confidence            67777776     34433       44557778888976554  489999998654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.65  E-value=1.9e-15  Score=94.12  Aligned_cols=80  Identities=15%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE--Eee--ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV--SDL--DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+..+.|.|.+ .|.|.|.++|+++|..+........  ...  ....+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~~~~c~v-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEE-EEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            468889999999 6999999999999999887654211  111  12246699999999999999999999999999999


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        93 ~l~V~   97 (103)
T 1wwb_X           93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEC
Confidence            99887

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.65  E-value=8.8e-16  Score=94.26  Aligned_cols=87  Identities=24%  Similarity=0.367  Sum_probs=73.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.| +.+.|++++..+....++...     ...|.|.+++.+|+|.|+|.+.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~   80 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLVESNRTRIT-----GEEVEVRDSIPADSGLYACVTS   80 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEE-SSC-CEEEEEBTTBCCCCCSSEEEC-----SSEEEESSCCGGGSEEEEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECC-CCC-CceEEEECCEecCCCCCEEEe-----CCEEEECCCChHHCEEEEEEec
Confidence            467777777888899999999999996 556 699999999988776665433     5689999999999999999999


Q ss_pred             eCCCcceeEEEEEE
Q psy11132         88 NMVAEDTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~~~~~~~l~v  101 (243)
                      |..|.....+.|.|
T Consensus        81 n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           81 SPSGSDTTYFSVNV   94 (95)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEEE
Confidence            99888777777765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.65  E-value=5.3e-15  Score=91.13  Aligned_cols=89  Identities=24%  Similarity=0.337  Sum_probs=73.2

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCC-CCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ...+....+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.+.|..+
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~-g~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEE-SCCTTCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eccCcCEEEcCCCcEEEEEEEe-ccCCCCEEEEEECCEECcCCCCEEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            3445677899999999999996 64 8889999999999887777665432 2246899999999999999999999999


Q ss_pred             cceeEEEEEEEc
Q psy11132         92 EDTQVQRLIVNV  103 (243)
Q Consensus        92 ~~~~~~~l~v~~  103 (243)
                      .....+.|.|..
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            888888887754

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=2.8e-15  Score=95.26  Aligned_cols=84  Identities=23%  Similarity=0.343  Sum_probs=71.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.....+.... ......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        17 ~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~   94 (114)
T 2cqv_A           17 QKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN   94 (114)
T ss_dssp             EEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEE-CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred             eEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEE-cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEE
Confidence            557789999999999 589999999999999887665554432 233678999999999999999999999999888999


Q ss_pred             EEEEee
Q psy11132        195 LQVKGN  200 (243)
Q Consensus       195 l~v~~~  200 (243)
                      |.|.+.
T Consensus        95 l~V~~~  100 (114)
T 2cqv_A           95 LTVVDK  100 (114)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            998843

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.65  E-value=2.9e-16  Score=98.43  Aligned_cols=93  Identities=29%  Similarity=0.468  Sum_probs=78.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~-g~p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEE-CSSCCBCCBCSSSSCCTTCSSEEEEECS-SEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEE-EcCCCEEEEEECCEECCCCCCEEEEECC-CEEEEEECcCCchhCEEEEEEEE
Confidence            567787788888999999999999995 7888899999999988776666655422 35789999999999999999999


Q ss_pred             eCCCcceeEEEEEEE
Q psy11132         88 NMVAEDTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~  102 (243)
                      |..|..+..+.|.|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999988888888774

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.64  E-value=7.6e-16  Score=107.19  Aligned_cols=121  Identities=22%  Similarity=0.286  Sum_probs=90.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC--CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  ..... .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        15 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   92 (194)
T 2a38_A           15 VVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQIS-FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST   92 (194)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEE-EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEE-eCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEE
Confidence            456789999999999 588889999999998887553  22222 23345789999999999999999999999988777


Q ss_pred             EEEEEEeec-----CCCCCeeeeeccceeeeccCcccc--cccceEEeCCee
Q psy11132        193 SKLQVKGNL-----NRLPPSYTLVFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       193 ~~l~v~~~~-----~~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      +.+.|....     ...+....+..+..+.+.|.....  +.+.|+++|..+
T Consensus        93 ~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~  144 (194)
T 2a38_A           93 AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI  144 (194)
T ss_dssp             EEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             EEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEEC
Confidence            777776311     011223345567788889987654  489999998654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=89.99  Aligned_cols=81  Identities=19%  Similarity=0.421  Sum_probs=64.9

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      .++.+.+|+++.|.|.+. + |.+.+.|+|+|..+....++.+...+ ....|.|.+++.+|+|.|+|.|.    ..+..
T Consensus         4 t~v~~~~G~~v~l~C~vs-~-p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~----n~~~~   76 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLS-G-PGGPVRWYKDGERLASQGRVQLEQAG-ARQVLRVQGARSGDAGEYLCDAP----QDSRI   76 (84)
T ss_dssp             CCEEECTTSCEEEECCCS-C-CSTTCEEEETTEECCCCSSEEEEECS-SCEEEEESSCSSTTCEEEEEECT----TTCEE
T ss_pred             eEEEEecCCCEEEEEEEC-C-CCcEEEEEECCEEccccccEEEeecC-CeEEEEecCCCCcccEEEEEEEC----CEEEE
Confidence            356788999999999983 5 77789999999999888777665433 35789999999999999999874    34566


Q ss_pred             EEEEEEcC
Q psy11132         97 QRLIVNVP  104 (243)
Q Consensus        97 ~~l~v~~~  104 (243)
                      +.|.|.+|
T Consensus        77 a~l~V~eP   84 (84)
T 2lu7_A           77 FLVSVEEP   84 (84)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            77777643

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2.3e-16  Score=97.68  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=74.3

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......    ......|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTC----EAGVAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEE-EESCCCCEEEESSSBCSSCCCEE----ETTEEEEEECSCCTTCCBCEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEe-eeCCCeEEEEECCEECcccceEe----eCCeEEEEECCCChhhCEEEEEE
Confidence            45678888778888899999999999995 77888999999998876543321    12257899999999999999999


Q ss_pred             EEeCCCcceeEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIV  101 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v  101 (243)
                      +.|..+.....+.|.|
T Consensus        83 a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           83 AENALGQVSCSAWVTV   98 (99)
T ss_dssp             EECSSCEEEEECCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999998777766665

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.64  E-value=6.1e-15  Score=93.97  Aligned_cols=81  Identities=25%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec------cceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ..+..+.|.|.+ .|.|.|.++|+++|..+............      ...+.|.|.++...|+|.|+|.|.|..|....
T Consensus        13 ~~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            467889999999 79999999999999999876654322111      13578999999999999999999999999998


Q ss_pred             eEEEEEEe
Q psy11132        192 SSKLQVKG  199 (243)
Q Consensus       192 ~~~l~v~~  199 (243)
                      ++.+.|.+
T Consensus        92 t~~l~v~~   99 (126)
T 1he7_A           92 SIMAAFMD   99 (126)
T ss_dssp             EEEECCCS
T ss_pred             EEEEEEEc
Confidence            88888874

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.64  E-value=2.4e-16  Score=110.48  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             CCCCCCCcEEEEEEee--cCCCCCEEEEEeCCEecCCC----------------CCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVT--HGDPPLTIRWLKDGKPLSPR----------------FPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~----------------~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+..|+.+.|.|...  .+.|.+.++|+|+|......                ..............|.|.+++.+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            3456899999999531  57789999999976432210                00011112233577999999999999


Q ss_pred             eEEEEEEccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCccccc--ccceEEeCCe
Q psy11132        177 EYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSFE--QDSWMIDNEN  236 (243)
Q Consensus       177 ~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~--~~~W~~~~~~  236 (243)
                      .|+|.|.|..|.....+.|.|.     .||.+..       ..+..+.+.|...+.|  .++|++++..
T Consensus        83 ~Y~C~a~n~~g~~~~~~~l~V~-----~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~  146 (203)
T 4fa8_A           83 NYLCRMKLGETEVTKQEHLSVV-----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  146 (203)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE-----EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC---
T ss_pred             EEEEEEEcCCCcEEEEEEEEec-----CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCee
Confidence            9999999999999888999888     4555433       3466778888776654  8999887643

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.64  E-value=7.6e-15  Score=121.96  Aligned_cols=185  Identities=12%  Similarity=0.133  Sum_probs=117.0

Q ss_pred             cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeec-CCCCCeeEEEEEEeCCCccee-EEEEE
Q psy11132         23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-SARHSGNYSCTVRNMVAEDTQ-VQRLI  100 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~-~~~l~  100 (243)
                      .+..+.|.|.+ .+.|.+.+.|.++|..+....          ...+.|..+ ....++.|.|.+.+..|.... .+.+.
T Consensus        90 ~~g~l~v~c~~-~g~P~p~i~W~k~g~~~~~~~----------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~  158 (731)
T 2v5y_A           90 PPGLLNVYVKV-NNGPLGNPIWNISGDPTRTWN----------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVL  158 (731)
T ss_dssp             CSEEEEEEEEE-TTCCCCSEEEEECCCCCSSCE----------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEE
T ss_pred             CcceEEEEEec-CCCCccceeEEEeCCcCCcee----------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEee
Confidence            34589999998 488888999999997764321          223444433 222236777766555553221 11121


Q ss_pred             EE---cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEE-EE--eCCEecCCCCCeeEEeeccceeEEEEeecCCCC
Q psy11132        101 VN---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIR-WL--KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH  174 (243)
Q Consensus       101 v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (243)
                      ..   .+|.+.  ......+..|+++.|.|.+ .|.|.+.+. |+  ++|..+.... ..........+.|.|.++...|
T Consensus       159 ~~~~~~~p~~~--~~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d  234 (731)
T 2v5y_A          159 GHPCTRTPHFL--RIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKE-IKVTSSRRFIASFNVVNTTKRD  234 (731)
T ss_dssp             SSCCSSSCEEC--CCCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEEE-EEECCSSEEEEEEEECSCCTTT
T ss_pred             ecccccccccc--cccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCccccccc-eEEeccccceEEEEEccccccc
Confidence            11   234333  1223567789999999999 699988887 77  6666554221 1111112234789999999999


Q ss_pred             CeeEEEEEEccCcc-eeeeEEEEEEeecC-CCCCeeeeeccceeeeccCc
Q psy11132        175 SGEYTCVASNTAAQ-ARYSSKLQVKGNLN-RLPPSYTLVFSQASYMSTSY  222 (243)
Q Consensus       175 ~g~y~C~~~n~~g~-~~~~~~l~v~~~~~-~~~p~~~~~~~~~~~~~~~~  222 (243)
                      .|.|+|.|.|..|. ....+.|.|...+. ..+|.+.......+.+.|..
T Consensus       235 ~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~  284 (731)
T 2v5y_A          235 AGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA  284 (731)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCC
T ss_pred             CeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCC
Confidence            99999999999997 66777888875432 23455554455566666654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=7.3e-15  Score=93.69  Aligned_cols=96  Identities=23%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCC--CCCceeEEEECCee-ec--CCCceEEEEee-----eeceEEEEeecCCCCC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGRY-LD--NSAALSITHVD-----QYNSMLVIDSVSARHS   79 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~-~~--~~~~~~~~~~~-----~~~~~l~i~~~~~~d~   79 (243)
                      |.|...+..+.+.+|++++|.|.+.+.  .|.+.|+|||+... +.  ...++.+....     .....|+|.+++..|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            456777888899999999999998632  37889999997421 11  12344433211     1257899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEc-CC
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNV-PP  105 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~-~p  105 (243)
                      |.|+|++.|..+..+..+.|.|.. ++
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~  114 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTG  114 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence            999999999999899999999998 44

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=4.3e-15  Score=94.98  Aligned_cols=101  Identities=17%  Similarity=0.300  Sum_probs=76.9

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARH   78 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d   78 (243)
                      +.|.|..||.+.......   ..+...|.|.+. |.|.+.+.|+++|..+....+.......   ...+.|.|.+++.+|
T Consensus         1 v~L~V~~pP~i~~~~~~~---~~~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   76 (118)
T 1wwc_A            1 VALTVYYPPRVVSLEEPE---LRLEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   76 (118)
T ss_dssp             ---CCCCCCCCCCCCCCC---CCCEEEEEEEEE-CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             CEEEEecCCceeccCCCe---eccceEEEEEee-eeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence            467888999987653322   236778999995 7888999999999999876655443322   135689999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      +|.|+|.|.|..|.....+.|.|...|.
T Consensus        77 ~G~Y~C~a~N~~G~~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           77 NGNYTLIAKNPLGTANQTINGHFLKEPF  104 (118)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred             CEEEEEEEECCCCeEeeEEEEEEccCCC
Confidence            9999999999999988888887776553

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.63  E-value=5e-16  Score=96.87  Aligned_cols=83  Identities=27%  Similarity=0.432  Sum_probs=70.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   95 (103)
T 3qp3_A           18 HRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTN-TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT   95 (103)
T ss_dssp             EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEE-CCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEE
Confidence            456789999999999 589999999999999988766554432 334568999999999999999999999999998999


Q ss_pred             EEEEe
Q psy11132        195 LQVKG  199 (243)
Q Consensus       195 l~v~~  199 (243)
                      |.|.+
T Consensus        96 l~V~~  100 (103)
T 3qp3_A           96 LDVTG  100 (103)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98873

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=94.51  Aligned_cols=92  Identities=18%  Similarity=0.255  Sum_probs=73.2

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ||.+...+.+..+.+|+.++|.|.+. +.+ ++.+.|+|+|..+....++.+.... ...+|.|.+++.+|+|.|+|.+.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~-~~~~~~~v~W~k~g~~i~~~~r~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLS-HESASDPAMWTVGGKTVGSSSRFQATRQG-RKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECS-SCCCSSCBCCBSSSSBCSBCSSCEEEEET-TEEEEEECSCCTTTCSCEEEEET
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEc-CCCCCceeEEEECCEECCCCCCEEEEEcC-CEEEEEECCCCHHHCEEEEEEEC
Confidence            45777778888999999999999995 544 4579999999999877776655432 25689999999999999999884


Q ss_pred             eCCCcceeEEEEEEEcCCC
Q psy11132         88 NMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~  106 (243)
                          .....+.|.|..+|.
T Consensus        86 ----~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           86 ----GLTSKASLIVRERSG  100 (104)
T ss_dssp             ----TEEEEECEEEECCCS
T ss_pred             ----CeeEEEEEEEeCCCc
Confidence                345677888887764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.63  E-value=2.7e-15  Score=105.59  Aligned_cols=121  Identities=10%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec-cceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+..+.|.+.+.|+++|..+.....+.+.... .....|.|.++..+|+|.|+|.|.|  |......
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~   89 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHS   89 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEE
T ss_pred             eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEE
Confidence            457789999999999656899999999999999876655544322 2345799999999999999999999  4444333


Q ss_pred             EEEEEeec----------------CCCCCe------eeeeccceeeeccCcccc---cccceEEeCCee
Q psy11132        194 KLQVKGNL----------------NRLPPS------YTLVFSQASYMSTSYYSF---EQDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~----------------~~~~p~------~~~~~~~~~~~~~~~~~~---~~~~W~~~~~~~  237 (243)
                      .+.+....                ...+|.      ..+..+..+.+.|.....   +.++|++||..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A           90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             EEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence            33221000                002443      345567888899986654   589999998766

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.63  E-value=7.2e-16  Score=103.37  Aligned_cols=83  Identities=27%  Similarity=0.456  Sum_probs=71.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.....+...........|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        51 ~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  129 (154)
T 1fhg_A           51 MEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE  129 (154)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEE
Confidence            456789999999999 5889999999999999887665555433344578999999999999999999999999988999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus       130 l~V~  133 (154)
T 1fhg_A          130 LLVE  133 (154)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9998

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=94.01  Aligned_cols=84  Identities=26%  Similarity=0.430  Sum_probs=69.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+...........|.|.++..+|+|.|+|.|.|..|.....+
T Consensus        18 ~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   96 (110)
T 2dm2_A           18 YKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG   96 (110)
T ss_dssp             EEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECC
T ss_pred             eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence            457789999999999 68999999999999988753 3333333333346899999999999999999999999998888


Q ss_pred             EEEEEe
Q psy11132        194 KLQVKG  199 (243)
Q Consensus       194 ~l~v~~  199 (243)
                      .|.|..
T Consensus        97 ~l~V~~  102 (110)
T 2dm2_A           97 RLMVQA  102 (110)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            898884

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.62  E-value=1.3e-14  Score=91.26  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC---ceeEEEECCeeecC---CCceEEEEee-----eeceEEEEeecCCC
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDN---SAALSITHVD-----QYNSMLVIDSVSAR   77 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~---~~~~~~~~~~-----~~~~~l~i~~~~~~   77 (243)
                      .|.+...+....+.+|++++|.|.+. +.|.   +.+.|+|++.....   ..++.+....     .....|.|.+++.+
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEE-CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEEC-CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            46777778888899999999999996 7776   89999998732211   2233332211     12568999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      |+|.|+|.+.|..|..+..+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999998888888875

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=7.3e-15  Score=91.53  Aligned_cols=91  Identities=19%  Similarity=0.336  Sum_probs=71.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      |+.+...+....+.+|++++|.|.+. + +.+.+.|+|++..+....  ++.+.... ....|.|.+++.+|+|.|+|.+
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~-~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVS-E-DDANVKWFKNGEEIIPGPKSRYRIRVEG-KKHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECS-S-SSCCCEEEETTEECCCSTTCSEEEEEET-TEEEEEEEEECTTTCSEEEEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEec-C-CCCeEEEEECCEECCCCCceEEEEEEcC-CEEEEEECCCCcccCEEEEEEE
Confidence            34477777788899999999999994 5 557999999999988766  44544322 2478999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCCC
Q psy11132         87 RNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p~  106 (243)
                      .|    .+..+.|.|..+|.
T Consensus        84 ~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           84 TG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             TT----EEEEEEEEEECCCS
T ss_pred             CC----CcEEEEEEEeCCCC
Confidence            76    46667788877664

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.62  E-value=6.4e-15  Score=105.14  Aligned_cols=168  Identities=18%  Similarity=0.232  Sum_probs=98.6

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCC--CceeEEEECC--ee---ec---------CCCceEEEEe-eeeceEEEEeecCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDI--PLTIKWLKDG--RY---LD---------NSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~---~~---------~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ..+..+.+.+|++++|.|.+. +.+  ...+.|+|..  ..   +.         ...++.+... .....+|.|.+++.
T Consensus         6 q~p~~v~v~~G~~vtL~C~~s-~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   84 (229)
T 1hxm_A            6 PEHQTVPVSIGVPATLRCSMK-GEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (229)
T ss_dssp             ESCSEEEEETTCCEEEEEEEC-SSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eCCCEEEEcCCCCEEEEeEec-CCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCH
Confidence            345567789999999999985 333  3579999842  21   10         1244544432 23356899999999


Q ss_pred             CCCeeEEEEEEeCCC------c--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEec
Q psy11132         77 RHSGNYSCTVRNMVA------E--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL  147 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~------~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~  147 (243)
                      +|+|.|.|.+.+...      .  ......|.|.........+ . ..+.. ....|.|.+.+.+|. +.+.|+++ ..+
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P-~-v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~  160 (229)
T 1hxm_A           85 RDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP-S-VFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKI  160 (229)
T ss_dssp             GGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCC-E-EEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEE
T ss_pred             hHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCC-c-EEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEE
Confidence            999999999987531      1  1123467776421111000 0 11111 124899999655565 49999998 655


Q ss_pred             CCCCCeeEEeeccceeEEEEeec-CCCCCeeEEEEEEccCcce
Q psy11132        148 SPRFPVNVSDLDSFSSLLSINSV-SAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~  189 (243)
                      ...........+   +.+.+... ..++.|.|+|.+.+..+..
T Consensus       161 ~~~~~~~~~~~d---g~y~~~~~~~~~~~~~ytC~V~h~~~~~  200 (229)
T 1hxm_A          161 TEFDPAIVISPS---GKYNAVKLGKYEDSNSVTCSVQHDNKTV  200 (229)
T ss_dssp             EECCCEEEECTT---SSEEEEEEEEETTTTTCEEEEEETTEEE
T ss_pred             ecCccceEECCC---CcEEEEECcccCCCCcEEEEEEeCCCCc
Confidence            433222111111   22222222 2367899999999987544

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.62  E-value=4.3e-15  Score=93.38  Aligned_cols=98  Identities=17%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe-eec-------CCCceEEEEeeeeceEEEEeecCCC
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR-YLD-------NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      +..+|.+...+....+.+|++++|.|.+. +.+.+.+.|++++. .+.       ...++..........+|.|.+++.+
T Consensus         3 v~~~p~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   81 (108)
T 3m45_A            3 VKGSQGQFPLTQNVTVVEGGTAILTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS   81 (108)
T ss_dssp             -----CCCEECCCEEEETTSCEEEEEEES-SCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGG
T ss_pred             cccCCCccccCCeeEEEeCCcEEEEeEEc-CCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChh
Confidence            44567777778889999999999999995 66778999999775 221       2234444433334678999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      |+|.|+|.+.+ .+..+..+.|.|..+|
T Consensus        82 D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           82 DEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             GCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             HCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999999 7777888888887665

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.62  E-value=1.5e-15  Score=92.82  Aligned_cols=79  Identities=22%  Similarity=0.274  Sum_probs=65.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..+..|+.+.|.|.+ .|.|.|.+.|++++  ..+......   ......+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        12 ~~v~~G~~~~l~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (93)
T 1wit_A           12 IKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLV---DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             EEECTTBCCEEEEEE-ECCSSCEEEEECSTTTCBCSTTSEE---EEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCEEEEEEEE-EEcCCCEEEEEECCCCcccCCcEEE---EecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEE
Confidence            557889999999999 59999999999999  777654221   122345789999999999999999999999988888


Q ss_pred             EEEEE
Q psy11132        193 SKLQV  197 (243)
Q Consensus       193 ~~l~v  197 (243)
                      +.|.|
T Consensus        88 ~~l~V   92 (93)
T 1wit_A           88 FEVIV   92 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88776

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=108.98  Aligned_cols=175  Identities=15%  Similarity=0.289  Sum_probs=104.4

Q ss_pred             CCcccccCCeEEEEEEeeCC-CCCceeEEEECC--ee---e---c-----------CCCceEEEEee-eeceEEEEeecC
Q psy11132         17 PERTLNVGERASLICSITKG-DIPLTIKWLKDG--RY---L---D-----------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ....+.+|++++|.|.+... .....+.|++..  ..   +   .           ...++.+.... ....+|+|.+++
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            34678999999999998531 234689999832  11   1   0           01344433322 235689999999


Q ss_pred             CCCCeeEEEEEEe-------CC------------C------cceeEEEEEEEc----CCCccccccCCCCCCCCCcEEEE
Q psy11132         76 ARHSGNYSCTVRN-------MV------------A------EDTQVQRLIVNV----PPKIESFAFPFDGLPEGARTRVI  126 (243)
Q Consensus        76 ~~d~G~Y~C~~~~-------~~------------~------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~  126 (243)
                      .+|+|.|.|.+.+       ..            .      .......|.|..    +|.+...... .....|+.+.|.
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~l~  189 (267)
T 3u1s_H          111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPS-SKSTSGGTAALG  189 (267)
T ss_dssp             GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-GGGEETTEEEEE
T ss_pred             hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCC-cccCCCCcEEEE
Confidence            9999999999862       10            0      011123555542    2222211111 233578999999


Q ss_pred             EEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        127 CGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       127 C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      |.+....| ++.+.|  ++..+......  .....++   ..+.|.|.....+| +.|+|.+.+..+.......+
T Consensus       190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  261 (267)
T 3u1s_H          190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  261 (267)
T ss_dssp             EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEc
Confidence            99975566 678999  55444321110  0111111   13568888888888 99999999987655444443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=90.20  Aligned_cols=78  Identities=17%  Similarity=0.389  Sum_probs=61.6

Q ss_pred             cCCCccCCCCCc--ccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPER--TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~--~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.+....++.  .+.+|+.+.|.|.+. + |.+.+.|+|+|..+....++.+...+ ....|.|.+++.+|+|.|+|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~-~-p~~~v~W~k~g~~i~~~~~~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~   79 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVD-R-EDAPVRWYKDGQEVEESDFVVLENEG-PHRRLVLPATQPSDGGEFQCV   79 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECS-C-TTSCCEEEETTSCCCCCSSCEEEEET-TEEEEEESSCCGGGCSEEEEE
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEEC-C-CCcEEEEEECCEEeeeeeeeeEEecC-CeEEEEeCCCChhhcEEEEEE
Confidence            466666555443  456899999999983 4 66789999999999887777665443 256899999999999999999


Q ss_pred             EEe
Q psy11132         86 VRN   88 (243)
Q Consensus        86 ~~~   88 (243)
                      |.|
T Consensus        80 a~n   82 (91)
T 2lvc_A           80 AGD   82 (91)
T ss_dssp             CSS
T ss_pred             Ecc
Confidence            854

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.62  E-value=5.6e-15  Score=101.75  Aligned_cols=117  Identities=18%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccCcc-eeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~  192 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+........... ....+.|.|.+++.+|+|.|+|.+.|..|. ....
T Consensus        12 ~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   90 (182)
T 1rhf_A           12 LTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   90 (182)
T ss_dssp             EEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence            456789999999999 4888999999999998876644333222 222478999999999999999999998775 4567


Q ss_pred             EEEEEEeecCCCCCee-------eeeccceeeeccCcccc--c-ccceEEeCCee
Q psy11132        193 SKLQVKGNLNRLPPSY-------TLVFSQASYMSTSYYSF--E-QDSWMIDNENY  237 (243)
Q Consensus       193 ~~l~v~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~--~-~~~W~~~~~~~  237 (243)
                      +.|.|.     .+|.+       .+..+..+.+.|.....  + .+.|+++|..+
T Consensus        91 ~~l~V~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  140 (182)
T 1rhf_A           91 VWLTVE-----GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI  140 (182)
T ss_dssp             EEEEEE-----CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred             EEEEEe-----cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence            888887     44544       34556677888876554  4 79999998654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.61  E-value=1.1e-14  Score=90.21  Aligned_cols=91  Identities=19%  Similarity=0.365  Sum_probs=72.8

Q ss_pred             cCCCccCCCCC-cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+.+ ..+.+|+.+.|.|.+.  .|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA--DPKLEVKWYKNGQEIRPSTKYIFEHKG-CQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES--CTTSCEEEEESSCBCCCBTTEEEEEET-TEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec--CCCceEEEEECCEECCCCCCEEEEecC-CEEEEEEcCCCcCcCEEEEEEE
Confidence            46777766655 5788999999999994  577899999999998877776655332 2458999999999999999999


Q ss_pred             EeCCCcceeEEEEEEEcCC
Q psy11132         87 RNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~p  105 (243)
                          +.....+.|.|..+|
T Consensus        83 ----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 ----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             ----TTEEEEEEEEECCSC
T ss_pred             ----CCceEEEEEEEecCC
Confidence                556677888887765

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=6.2e-16  Score=98.46  Aligned_cols=102  Identities=15%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             EEEecCC-CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132          4 IFSTVPP-KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         4 l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |.|..+| .+...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.........|.|.+++.+|+|.|
T Consensus         7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (115)
T 2cr6_A            7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI   85 (115)
T ss_dssp             CCCCSSCCEEEECCCEEEEETTSCEECCCEEE-STTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEE
T ss_pred             EEEcCCCCeEeccCccEEEeCCCcEEEEEEEc-CCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEE
Confidence            4555555 666667788899999999999996 77888999999999988766554432223356899999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEcCCCcccc
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNVPPKIESF  110 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~~p~~~~~  110 (243)
                      +|.+    +.....+.|.|..+|.+...
T Consensus        86 ~C~~----g~~~~~~~L~V~~~p~~~~~  109 (115)
T 2cr6_A           86 YFEA----GDQRASAALRVTEKPSVFSR  109 (115)
T ss_dssp             EEEE----TTEECCEEEEEECCSSCCSS
T ss_pred             EEEE----CCeeEEEEEEEECCCceecc
Confidence            9993    55666788999888765443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.61  E-value=1.2e-15  Score=95.99  Aligned_cols=98  Identities=24%  Similarity=0.395  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132         97 QRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus        97 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      +.+.+..+|.+...+.. ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.........   .....|.|.++..+|+|
T Consensus         3 ~~v~~~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~G   77 (108)
T 3kvq_A            3 LTVLERVAPTITGNLEN-QTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSGIVLK---DGNRNLTIRRVRKEDEG   77 (108)
T ss_dssp             --------CCCBSCCCC-EEEETTCCEEEECBC-C----CCEEEEESSSBCCCBTTEEEE---TTTTEEEECSCCGGGCE
T ss_pred             eeECccCCCceecCCCC-eEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEcccCCCeEEe---CCCcEEEEeecCcccCE
Confidence            34556666766554433 567789999999999 68899999999999888765443332   22467999999999999


Q ss_pred             eEEEEEEccCcceeeeEEEEEEe
Q psy11132        177 EYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       177 ~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      .|+|.|.|..|.....+.|.|.+
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           78 LYTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EEEEEEC----CEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCceEEEEEEEEeC
Confidence            99999999999999999999883

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.2e-15  Score=92.39  Aligned_cols=93  Identities=19%  Similarity=0.331  Sum_probs=73.0

Q ss_pred             cCCCccCCCCC---cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPE---RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+...+..   ..+.+|+.+.|.|.+. +.+.+ +.|++++..+....++.+.... ....|.|.+++.+|+|.|+|
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~-~~p~~-v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C   82 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELS-RVDFP-ATWYKDGQKVEESELLVVKMDG-RKHRLILPEAKVQDSGEFEC   82 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECS-STTCC-CEEEETTEECCCBTTBEEEEET-TEEEEEESSCCTTTCEEEEE
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEec-CCCCc-cEEeeCCEECCCCCCEEEEeCC-CEEEEEECCCChhhCEEEEE
Confidence            46666666666   6889999999999995 66776 9999999998877666555322 25689999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCCc
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      .+.|..    ..+.|.|.++|..
T Consensus        83 ~a~n~~----~~~~l~V~~~P~p  101 (104)
T 2e6p_A           83 RTEGVS----AFFGVTVQDPSGP  101 (104)
T ss_dssp             ECSSCC----CCEEEEEECCCCS
T ss_pred             EECCce----EEEEEEEcCCCCC
Confidence            998763    3567888877653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.61  E-value=9.6e-16  Score=95.05  Aligned_cols=84  Identities=23%  Similarity=0.403  Sum_probs=66.4

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV   96 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   96 (243)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+............|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        16 ~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   94 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   94 (100)
T ss_dssp             CEEEECTTCCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cEEEecCCCEEEEEEEcc-ccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence            356788999999999995 7788899999999988764432211222235689999999999999999999999987777


Q ss_pred             EEEEE
Q psy11132         97 QRLIV  101 (243)
Q Consensus        97 ~~l~v  101 (243)
                      +.|.|
T Consensus        95 ~~l~V   99 (100)
T 3caf_A           95 YHLDV   99 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.5e-15  Score=93.00  Aligned_cols=93  Identities=23%  Similarity=0.399  Sum_probs=75.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. + +.+.+.|++++..+....++.+..... ...|.|.+++.+|+|.|+|.+.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~-~-~~~~v~W~k~g~~~~~~~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~   83 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELS-R-AGTPVHWLKDRKAIRKSQKYDVVCEGT-MAMLVIRGASLKDAGEYTCEVE   83 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEES-S-SSCCCCEEESSCBCCCSSSEEEEEETT-EEEEEESSCCTTTCSEEEEECS
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEe-C-CCCcEEEEECCEEccCCCCEEEEECCC-EEEEEECCCCcccCEEEEEEEc
Confidence            467787777888999999999999995 5 667899999999988777666554322 5689999999999999999998


Q ss_pred             eCCCcceeEEEEEEEcCCCc
Q psy11132         88 NMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |    ....+.|.|..+|..
T Consensus        84 n----~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           84 A----SKSTASLHVEEKASG   99 (103)
T ss_dssp             S----CEEEEEEEECCCSSS
T ss_pred             c----CCcEEEEEEeCCCCC
Confidence            7    356778888776643

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.61  E-value=2.3e-15  Score=104.56  Aligned_cols=120  Identities=19%  Similarity=0.244  Sum_probs=87.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc-eeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........  .....|.|.+++.+|+|.|+|.+.|..|. .....
T Consensus        17 ~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   93 (192)
T 2iep_A           17 VDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG   93 (192)
T ss_dssp             EEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred             eeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence            446789999999999 578888999999999887533222221  12357999999999999999999998877 34556


Q ss_pred             EEEEEeec--CCCCCeeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        194 KLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      .+.|...+  ...+....+..+..+.+.|.....+  .+.|+++|..+
T Consensus        94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~  141 (192)
T 2iep_A           94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL  141 (192)
T ss_dssp             EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEEC
T ss_pred             EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEc
Confidence            66666321  1123334566778888999875554  89999988654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.6e-15  Score=94.86  Aligned_cols=81  Identities=20%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+... ..... .......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        34 ~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~-~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~  110 (118)
T 2e7c_A           34 YIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLDTS-RVHVR-TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIR  110 (118)
T ss_dssp             EEEESSSCEEEEEEE-EEESCCEEEEEETTEECCCS-SCEEE-ECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEE
T ss_pred             EEEECCCEEEEEEEE-ccCCCCEEEEEECCEECCCC-cEEEE-ECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEE
Confidence            456789999999999 58999999999999998732 22222 3334577999999999999999999999999888999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus       111 l~V~  114 (118)
T 2e7c_A          111 IRVV  114 (118)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9988

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=7.1e-15  Score=92.70  Aligned_cols=95  Identities=21%  Similarity=0.252  Sum_probs=71.8

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCC--CCCceeEEEECCe-eecC--CCceEEEEee-----eeceEEEEeecCCCCC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGR-YLDN--SAALSITHVD-----QYNSMLVIDSVSARHS   79 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~-~~~~--~~~~~~~~~~-----~~~~~l~i~~~~~~d~   79 (243)
                      +.+...+.++.+.+|++++|.|.+.+.  .|.+.|+|||+.. .+..  ..++.+....     .....|+|.+++..|+
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   92 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR   92 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence            456666888899999999999999632  3678999999742 2211  2333332211     1257899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcC
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~  104 (243)
                      |.|+|.+.+..+..+..+.|.|..+
T Consensus        93 G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           93 GYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             SCEEEEEECSSCEEEEEECCEEECC
T ss_pred             EEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999999998764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.60  E-value=2.2e-14  Score=99.50  Aligned_cols=105  Identities=21%  Similarity=0.288  Sum_probs=82.4

Q ss_pred             CCCC-CCcEEEEEEeecCCCC--CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        116 GLPE-GARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       116 ~~~~-g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      .+.. |+.+.|.|.+. +.|.  +.+.|++++..+.......      ....|.|.++..+|+|.|+|.|.|. +.....
T Consensus        13 ~v~~~G~~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~   84 (190)
T 2wv3_A           13 IIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRKNA------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKAN   84 (190)
T ss_dssp             ECCCSSSCEEEEEEEE-ECSSCEEEEEEEETTEECTTCCBCC------SEEEEEESSCCGGGCEEEEEEEEET-TEEEEE
T ss_pred             EEccCCceEEEEEEec-cCCCCceEEEEEECCEECcccceEe------ccEEEEEecCCcccCEEEEEEEEeC-Cccccc
Confidence            3445 99999999994 6665  8999999999887653222      3578999999999999999999999 888888


Q ss_pred             EEEEEEeecCCCCCeee-------eeccceeeeccCcccc--cccceEEe
Q psy11132        193 SKLQVKGNLNRLPPSYT-------LVFSQASYMSTSYYSF--EQDSWMID  233 (243)
Q Consensus       193 ~~l~v~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~--~~~~W~~~  233 (243)
                      +.|.|.     .+|.+.       +..+..+.+.|...+.  +.+.|+++
T Consensus        85 ~~l~V~-----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~  129 (190)
T 2wv3_A           85 ATIEVK-----AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK  129 (190)
T ss_dssp             EEEEEE-----CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEE
T ss_pred             EEEEEe-----cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEc
Confidence            888888     555543       4456677888876544  48999994

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.6e-14  Score=89.00  Aligned_cols=93  Identities=15%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+  +.|.+.+.|++++..+....++.+.. ......|.|.+++.+|+|.|+|.  
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~--   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCKT--EHPAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDTYTCD--   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEEC--SSCCSCCEEEESSCBCCSSSSEEEEE-ETTEEEEEEESCCTTTCSEEEEE--
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEEe--CCCCCeEEEEeCCEECCCCCeEEEEe-CCCEEEEEECCCCcccCEEEEEE--
Confidence            47788888888999999999999995  66777999999999988777766543 22245899999999999999998  


Q ss_pred             eCCCcceeEEEEEEEcCCCc
Q psy11132         88 NMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~~  107 (243)
                        .+.....+.|.|...|..
T Consensus        82 --~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           82 --IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             --CSSCBCCEEEEEECSCCC
T ss_pred             --eCCceEEEEEEEeCccCC
Confidence              456666788888876643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.60  E-value=6.2e-15  Score=104.47  Aligned_cols=123  Identities=23%  Similarity=0.319  Sum_probs=86.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe--eEEeec-cceeEEEEeecCCCCCeeEEEEEEccCcce-e
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV--NVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQA-R  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~--~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~  190 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......  ...... .....+.|.+++.+|+|.|+|.+.|..|.. .
T Consensus        19 ~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~   97 (217)
T 2vr9_A           19 LVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS   97 (217)
T ss_dssp             EEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEEC
T ss_pred             eEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcccc
Confidence            557889999999999 58889999999999988764221  111111 111223688899999999999999998865 3


Q ss_pred             eeEEEEEEeec---CCCCCeeeeeccceeeeccCc-ccc--cccceEEeCCeeE
Q psy11132        191 YSSKLQVKGNL---NRLPPSYTLVFSQASYMSTSY-YSF--EQDSWMIDNENYV  238 (243)
Q Consensus       191 ~~~~l~v~~~~---~~~~p~~~~~~~~~~~~~~~~-~~~--~~~~W~~~~~~~~  238 (243)
                      ..+.+.|....   ...|....+..+..+.+.|.. ...  +.+.|+++|..+.
T Consensus        98 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           98 RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             CCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             ccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            45566655321   112334556778889999977 444  4899999987654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=96.37  Aligned_cols=85  Identities=32%  Similarity=0.497  Sum_probs=71.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        19 ~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   97 (110)
T 2dm3_A           19 LTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLE   97 (110)
T ss_dssp             EEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCE
T ss_pred             EEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEE
Confidence            456789999999999 5899999999999998876655444444444578999999999999999999999999888899


Q ss_pred             EEEEee
Q psy11132        195 LQVKGN  200 (243)
Q Consensus       195 l~v~~~  200 (243)
                      |.|...
T Consensus        98 l~V~~~  103 (110)
T 2dm3_A           98 LVVAAK  103 (110)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            998843

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=91.90  Aligned_cols=98  Identities=23%  Similarity=0.294  Sum_probs=74.8

Q ss_pred             EEecCCCccCCCCC---cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          5 FSTVPPKLSPTNPE---RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         5 ~v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      .+..||.+...+..   ..+.+|+.+.|.|.+.  .|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.
T Consensus         6 ~v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~   82 (113)
T 2cpc_A            6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC--RPWAEVRWTKDGEEVVESPALLLQKED-TVRRLVLPAVQLEDSGE   82 (113)
T ss_dssp             CCCSCSCSEEESCSCEEEEEETTCCEEEEEEES--CTTCCCEEEETTEECCCBTTBEEEECS-SEEEEEESSCCTTTCEE
T ss_pred             ccccCCcEEEccCCceeEEEEcCCeEEEEEEec--CCCCeEEEEECCEECccCCCEEEEECC-CEEEEEECCCCcccCEE
Confidence            34556655544443   5688999999999983  677899999999998876666654332 24689999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCccc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKIES  109 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~~~  109 (243)
                      |+|.+.|    .+..+.|.|..+|....
T Consensus        83 Y~C~a~n----~~~~~~l~V~~~p~~~~  106 (113)
T 2cpc_A           83 YLCEIDD----ESASFTVTVTEPPVRII  106 (113)
T ss_dssp             EEEESSS----CEEEEEEEEECCCCCCC
T ss_pred             EEEEEec----CcEEEEEEEecCCchhc
Confidence            9999987    55678888888775543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.59  E-value=1.5e-14  Score=91.64  Aligned_cols=97  Identities=20%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             eEEEe-cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132          3 VIFST-VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         3 ~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      .|.|. .||.+...+....+.+|+++.|.|.+. +.  +.+.|++++..+....++.+.... ....|.|.+++.+|+|.
T Consensus        12 ~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~-~~--p~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~   87 (113)
T 2edh_A           12 MLTVRALPIKFTEGLRNEEATEGATAVLRCELS-KM--APVEWWKGHETLRDGDRHSLRQDG-ARCELQIRGLVAEDAGE   87 (113)
T ss_dssp             CCCCCCSCCCEEECCCCCEECTTSCEEEEEEES-SC--CCCEEEESSSBCCCSSSEEEEEET-TEEEEEECSCCSTTCEE
T ss_pred             EEEEEcCCCcccccCCceEEeCCCeEEEEEEEC-CC--CcEEEEECCEECCCCCcEEEEECC-CEEEEEECCCChhhCEE
Confidence            35556 456887777788899999999999994 44  579999999999877777655432 24689999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |+|.+    +.....+.|.|..+|..
T Consensus        88 Y~C~a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           88 YLCMC----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             EEEEE----TTEEEEEEEEECCCCCS
T ss_pred             EEEEe----CCCCEEEEEEEeCCCCC
Confidence            99999    56667788888776643

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.59  E-value=4.6e-14  Score=96.21  Aligned_cols=166  Identities=11%  Similarity=0.149  Sum_probs=107.4

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .+.+.++...|..|+++.|+|.+. ...+-.+.|...   +.   + .......+-..|.|.+++  +.|.|.|.+.-..
T Consensus         4 ~v~v~P~~~~V~~G~S~~l~Cs~~-c~~p~~~glet~---l~---~-~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~   73 (192)
T 1zxq_A            4 EVHVRPKKLAVEPKGSLEVNCSTT-CNQPEVGGLETS---LN---K-ILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSG   73 (192)
T ss_dssp             CEEEESSEEEECTTEEEEEEEEES-CSSCSEEEEECS---SE---E-EEEEEETTEEEEEEEEEC--SCEEEEEEEEETT
T ss_pred             EEEEeCCCcEEeCCCcEEEEEECC-CCCccccccccc---cC---c-eEEcCCCCeEEEEEeccc--cCCeeEEEEECCC
Confidence            344556677789999999999984 333323444421   11   0 011112223569999998  7899999998765


Q ss_pred             CcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEEee-ccceeEEEE
Q psy11132         91 AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSI  167 (243)
Q Consensus        91 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i  167 (243)
                      ......+.|.|..+|...........+.+|+.++|.|.+.++.|..  ++.|++++..+........... ......+.+
T Consensus        74 ~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~~~  153 (192)
T 1zxq_A           74 KQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNS  153 (192)
T ss_dssp             EEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEE
T ss_pred             cceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEEEE
Confidence            5667888999998887665543224578999999999998778865  4799999887753210000000 111223333


Q ss_pred             eecCCCCCe-eEEEEEEccCc
Q psy11132        168 NSVSAAHSG-EYTCVASNTAA  187 (243)
Q Consensus       168 ~~~~~~d~g-~y~C~~~n~~g  187 (243)
                       .+.++|.| .|+|.|.-..+
T Consensus       154 -~~~r~D~g~~~sC~A~L~L~  173 (192)
T 1zxq_A          154 -TADREDGHRNFSCLAVLDLM  173 (192)
T ss_dssp             -ECCGGGGGCEEEEEEEEECG
T ss_pred             -ecchhhCCceEEEEEEecCc
Confidence             45667777 99999997763

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=1.7e-14  Score=92.17  Aligned_cols=96  Identities=25%  Similarity=0.363  Sum_probs=71.9

Q ss_pred             EEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec---cceeEEEEeecCCCC
Q psy11132         98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAH  174 (243)
Q Consensus        98 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d  174 (243)
                      .|.|..+|.+.....  .  .......|.|.+ .|.|.+.+.|+++|..+............   ...+.|.|.++..+|
T Consensus         2 ~L~V~~pP~i~~~~~--~--~~~~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   76 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEE--P--ELRLEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   76 (118)
T ss_dssp             --CCCCCCCCCCCCC--C--CCCCEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             EEEEecCCceeccCC--C--eeccceEEEEEe-eeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence            456667777554321  1  233667889999 58999999999999998876544332211   135689999999999


Q ss_pred             CeeEEEEEEccCcceeeeEEEEEE
Q psy11132        175 SGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       175 ~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      +|.|+|.|.|..|....++.+.|.
T Consensus        77 ~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           77 NGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CEEEEEEEECCCCeEeeEEEEEEc
Confidence            999999999999999988888777

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.59  E-value=5.9e-15  Score=91.27  Aligned_cols=82  Identities=28%  Similarity=0.452  Sum_probs=69.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        16 ~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~   93 (99)
T 3puc_A           16 TTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSE-DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK   93 (99)
T ss_dssp             EEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEE-eCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            456789999999999 588999999999999988765554433 233568999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (99)
T 3puc_A           94 LTIK   97 (99)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.59  E-value=1.6e-14  Score=89.92  Aligned_cols=92  Identities=22%  Similarity=0.368  Sum_probs=73.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+++.|.|.+. +.+.+ +.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.  
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~-v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~--   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLS-SVAAP-VKWCYGNNVLRPGDKYSLRQEG-AMLELVVRNLRPQDSGRYSCS--   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECS-SCCCS-CEEEESSSBCCCSSSEEEEECS-SEEEEEECSCCTTTCCCEEEE--
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEe-CCCCC-eEEEECCEECCCCCcEEEEEcC-CEEEEEEccCCcccCEEEEEE--
Confidence            578888778889999999999999985 67777 9999999988776666655432 356799999999999999998  


Q ss_pred             eCCCcceeEEEEEEEcCCC
Q psy11132         88 NMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~  106 (243)
                        .+.....+.|.|..+|.
T Consensus        82 --~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           82 --FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             --CSSCBCCBCEEEECCCC
T ss_pred             --ECCcEEEEEEEEEeccc
Confidence              45555667788877664

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.59  E-value=1.2e-14  Score=91.81  Aligned_cols=99  Identities=21%  Similarity=0.441  Sum_probs=72.2

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEEEee-------eeceEEEEeec
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVD-------QYNSMLVIDSV   74 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~   74 (243)
                      ......+|.+...+....+.+|+.++|.|.+.+. .+.+.+.|++++..+............       .....|.|.++
T Consensus         4 ~c~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (112)
T 3so5_A            4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNV   83 (112)
T ss_dssp             ----CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSC
T ss_pred             ecCCCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecc
Confidence            3445678888888888899999999999998633 345799999999887654321111111       11478999999


Q ss_pred             CCCCCeeEEEEEEeCCCc-ceeEEEEEE
Q psy11132         75 SARHSGNYSCTVRNMVAE-DTQVQRLIV  101 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  101 (243)
                      +.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        84 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           84 EFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999999998887 456666665

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.58  E-value=2.9e-14  Score=87.37  Aligned_cols=87  Identities=14%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+...+....+.+|+.+.|.|.+  +.+.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+  
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a--   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGSDISASNKYGLATEG-TRHTLTVREVGPADQGSYAVIA--   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC--SSSSCCCEEECSSSEECSSTTCEEEEET-TEEEEEESSCCTTCCSEEEEEE--
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe--CCCCCeEEEEECCEECCCCCcEEEEEcC-CEEEEEEcCCCcccCEEEEEEE--
Confidence            3566666778889999999999998  5677799999999998877766654332 2468999999999999999999  


Q ss_pred             CCCcceeEEEEEEE
Q psy11132         89 MVAEDTQVQRLIVN  102 (243)
Q Consensus        89 ~~~~~~~~~~l~v~  102 (243)
                        +.....+.|.|.
T Consensus        83 --g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 --GSSKVKFDLKVI   94 (95)
T ss_dssp             --TTEEEEEEEEEE
T ss_pred             --CCceEEEEEEEe
Confidence              445555666664

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.58  E-value=6.8e-15  Score=105.13  Aligned_cols=117  Identities=23%  Similarity=0.393  Sum_probs=89.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus        29 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~  107 (231)
T 3ojm_B           29 HAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH  107 (231)
T ss_dssp             EEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEE
Confidence            456789999999999 5788899999999998875443322222233468999999999999999999999998888888


Q ss_pred             EEEEeecCCC-------CCeeeeeccceeeeccCcccc--cccceEE
Q psy11132        195 LQVKGNLNRL-------PPSYTLVFSQASYMSTSYYSF--EQDSWMI  232 (243)
Q Consensus       195 l~v~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~--~~~~W~~  232 (243)
                      +.|.......       +....+..+..+.+.|.....  +.+.|++
T Consensus       108 l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  154 (231)
T 3ojm_B          108 LDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK  154 (231)
T ss_dssp             EEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEE
T ss_pred             EEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEE
Confidence            8887432211       233456678888999987655  4899999

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=101.73  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=82.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc--eeeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ--ARYSS  193 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~  193 (243)
                      .+.+|++++|.|.+ .+ +.+.+.|++++..+....  ...........|.|.+++.+|+|.|+|.|.|..|.  ....+
T Consensus        15 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   90 (196)
T 3p2t_A           15 VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDR--QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL   90 (196)
T ss_dssp             EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEE--ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccc--cccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence            56789999999998 46 678999999998765321  11111133578999999999999999999999883  34556


Q ss_pred             EEEEEeecCCCCCeee------eeccceeeeccCcccc-cccceEEeCCee
Q psy11132        194 KLQVKGNLNRLPPSYT------LVFSQASYMSTSYYSF-EQDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~~------~~~~~~~~~~~~~~~~-~~~~W~~~~~~~  237 (243)
                      .|.|.+..  .+|.+.      +..++.+.+.|....- +.+.|+++|..+
T Consensus        91 ~l~V~~~~--~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~  139 (196)
T 3p2t_A           91 ELVMTGAY--SKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAH  139 (196)
T ss_dssp             EEEEECSS--CCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCC
T ss_pred             EEEecCCC--CCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcc
Confidence            67665322  344433      4456778888876543 379999998743

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.58  E-value=4.6e-14  Score=86.85  Aligned_cols=82  Identities=16%  Similarity=0.308  Sum_probs=68.9

Q ss_pred             CCCCCCCcEEEEEEeecCC-CCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGD-PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+. |.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.|.|..|.....+
T Consensus        11 ~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   88 (97)
T 2bk8_A           11 AVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLENSEKYEITY-EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA   88 (97)
T ss_dssp             EEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCSSSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcCCCCEEEEE-cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence            456789999999999 576 889999999999988766554433 33356899999999999999999999999988888


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        89 ~l~V~   93 (97)
T 2bk8_A           89 ELFVK   93 (97)
T ss_dssp             EEEET
T ss_pred             EEEEE
Confidence            88876

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=89.76  Aligned_cols=78  Identities=17%  Similarity=0.312  Sum_probs=64.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+   .|.+.+.|+++|..+.....+.+.. .+....|.|.++..+|+|.|+|.|.|.  ....++.
T Consensus        17 ~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~   90 (100)
T 2yuz_A           17 QTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQ-KGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAK   90 (100)
T ss_dssp             EEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEE-CSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEE
T ss_pred             eEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEE-eCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEE
Confidence            567889999999998   5778999999999998776655433 334568999999999999999999997  4567788


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        91 L~V~   94 (100)
T 2yuz_A           91 VHVI   94 (100)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8888

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.57  E-value=7e-15  Score=105.85  Aligned_cols=117  Identities=25%  Similarity=0.398  Sum_probs=87.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus        25 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~  103 (241)
T 3grw_A           25 LAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT  103 (241)
T ss_dssp             EEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEE
Confidence            456789999999999 5889999999999998875443322222333568999999999999999999999998888888


Q ss_pred             EEEEeecCCCCC-------eeeeeccceeeeccCcccc--cccceEE
Q psy11132        195 LQVKGNLNRLPP-------SYTLVFSQASYMSTSYYSF--EQDSWMI  232 (243)
Q Consensus       195 l~v~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~--~~~~W~~  232 (243)
                      +.|.......|+       ...+..+..+.+.|.....  +.+.|++
T Consensus       104 l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~  150 (241)
T 3grw_A          104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK  150 (241)
T ss_dssp             EEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEE
T ss_pred             EEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEE
Confidence            888743321221       2234456778888877554  4899999

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.57  E-value=1e-14  Score=101.83  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=76.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~  192 (243)
                      ..+.+|+++.|.|.+ .+.|. .+.|++++..+.....  ..........|.|.++..+|+|.|+|.|.|..|..  +..
T Consensus        14 ~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~   89 (196)
T 2d3v_A           14 SVISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQ--NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDP   89 (196)
T ss_dssp             SEEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEE--CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCC
T ss_pred             CcccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccc--cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCcc
Confidence            356789999999998 46655 9999999987653211  01112335789999999999999999999987743  345


Q ss_pred             EEEEEEeecCCCCCee------eeeccceeeeccCcccc-cccceEEeCCee
Q psy11132        193 SKLQVKGNLNRLPPSY------TLVFSQASYMSTSYYSF-EQDSWMIDNENY  237 (243)
Q Consensus       193 ~~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~  237 (243)
                      +.|.|....  .+|.+      .+..++.+.+.|..... +.+.|+++|..+
T Consensus        90 ~~l~V~~~~--~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~~~~W~k~g~~~  139 (196)
T 2d3v_A           90 LELVVTGFY--NKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHK  139 (196)
T ss_dssp             EEEEEECSS--CCCEEEC-----------CEEEEEESSCCSEEEEEEC---C
T ss_pred             EEEEecCCC--CCCeEEccCCccccCCCcEEEEEEcCCCCCEEEEEccCCcc
Confidence            677776321  23333      34556778888876544 589999999765

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.57  E-value=1.5e-14  Score=88.74  Aligned_cols=76  Identities=22%  Similarity=0.382  Sum_probs=63.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.| +.+.|++++..+.........     ...|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        19 ~~v~~G~~v~l~C~~-~g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   91 (95)
T 2ckn_A           19 LLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLVESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFS   91 (95)
T ss_dssp             EEECTTSCEEEECCE-ESSC-CEEEEEBTTBCCCCCSSEEEC-----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEC-CCCC-CceEEEECCEecCCCCCEEEe-----CCEEEECCCChHHCEEEEEEeccCCCcEEEEEE
Confidence            557899999999999 4777 799999999988765543332     468999999999999999999999999888877


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        92 l~V   94 (95)
T 2ckn_A           92 VNV   94 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2e-15  Score=93.37  Aligned_cols=78  Identities=28%  Similarity=0.460  Sum_probs=64.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+......    .......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        21 ~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   95 (99)
T 2yr3_A           21 CAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYARST----CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAW   95 (99)
T ss_dssp             EEECTTCCEEEECEE-EEESCCCCEEEESSSBCSSCCCE----EETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECC
T ss_pred             CEEeCCCeEEEEEEE-eeeCCCeEEEEECCEECcccceE----eeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEE
Confidence            457789999999999 58899999999999887754322    1223578999999999999999999999999888777


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        96 l~V   98 (99)
T 2yr3_A           96 VTV   98 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=102.84  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=84.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.+.|..|.. ...+
T Consensus        28 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~   96 (218)
T 3k0w_A           28 KAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGN----------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS   96 (218)
T ss_dssp             EEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCC----------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred             eEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCC----------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence            456789999999999 688999999999999886542          3679999999999999999999998755 4557


Q ss_pred             EEEEEeecC----------CCCCe-------eeeeccceeeeccCcccc--cccceEEeCCee
Q psy11132        194 KLQVKGNLN----------RLPPS-------YTLVFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~~----------~~~p~-------~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      .+.|.....          ..+|.       ..+..+..+.+.|.....  +.+.|+++|..+
T Consensus        97 ~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~  159 (218)
T 3k0w_A           97 QLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL  159 (218)
T ss_dssp             EEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEEC
T ss_pred             EEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEEC
Confidence            777763311          01123       344556778888877554  489999988643

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=100.10  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=78.7

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSS  193 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~  193 (243)
                      .+.+|+++.|.|.+ .+ +.+.+.|++++...           ......|.|.+++.+|+|.|+|.|.|..|..  +..+
T Consensus        18 ~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~-----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   84 (184)
T 2gi7_A           18 LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSR-----------YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQL   84 (184)
T ss_dssp             EEETTCCEEEEEEC-ST-TCSEEEEEETTTCC-----------EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             cccCCCcEEEEEeC-CC-CCCEEEEEECCccc-----------cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCE
Confidence            56789999999998 46 77899999998751           1124679999999999999999999987643  3456


Q ss_pred             EEEEEeecCCCCCeeee------eccceeeeccCcccc-cccceEEeCCee
Q psy11132        194 KLQVKGNLNRLPPSYTL------VFSQASYMSTSYYSF-EQDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~~~------~~~~~~~~~~~~~~~-~~~~W~~~~~~~  237 (243)
                      .|.|.+..  .+|.+..      ..++.+.+.|..... +.+.|+++|..+
T Consensus        85 ~l~V~~~~--~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~  133 (184)
T 2gi7_A           85 ELVATGVF--AKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPA  133 (184)
T ss_dssp             EEEEESSS--CCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCT
T ss_pred             EEEecCcC--CCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcC
Confidence            67765321  3444433      346778888876433 489999998654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=92.26  Aligned_cols=81  Identities=26%  Similarity=0.403  Sum_probs=66.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+...........   .+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (118)
T 2eo9_A           18 QTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQLE---NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY   93 (118)
T ss_dssp             EEEETTCEEEEECBC-CCSSCCEEEEEESSSBCCTTSTTEEEEE---TTEEEEESCCGGGCCCEEEEEECSSCEEEEECC
T ss_pred             EEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCeEEEcc---CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEE
Confidence            457789999999999 6899999999999988865322222111   347999999999999999999999999888888


Q ss_pred             EEEEe
Q psy11132        195 LQVKG  199 (243)
Q Consensus       195 l~v~~  199 (243)
                      |.|..
T Consensus        94 l~V~~   98 (118)
T 2eo9_A           94 IEVQE   98 (118)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88883

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1e-14  Score=90.37  Aligned_cols=80  Identities=29%  Similarity=0.529  Sum_probs=65.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+..........   ....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        18 ~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2edj_A           18 QTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAV   93 (100)
T ss_dssp             EEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEEC---TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred             EEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEEc---CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence            456789999999999 589999999999998876432221111   1356999999999999999999999999988999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (100)
T 2edj_A           94 LDVT   97 (100)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9888

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.56  E-value=1e-14  Score=91.36  Aligned_cols=90  Identities=22%  Similarity=0.320  Sum_probs=71.5

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+.+..+.+|+.+.|.|.+. +.+.+ +.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~-~~~~~-v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVS-DEKVT-GKWYKNGVEVRPSKRITISHVG-RFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEES-CSSCE-EEEEESSCBCCCCSSCEEEEET-TEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEc-CCCcc-eEEEcCCEECcCCCCEEEEEeC-CEEEEEECCCCcCCCEEEEEEEc
Confidence            467888888889999999999999995 66666 9999999998877776655332 24689999999999999999999


Q ss_pred             eCCCcceeEEEEEEE
Q psy11132         88 NMVAEDTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~  102 (243)
                      |.  ..+..+.|.|.
T Consensus        84 n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           84 GY--ALSLSAKLNFL   96 (106)
T ss_dssp             TS--CCCCCBCEEEE
T ss_pred             cC--CceEEEEEEEE
Confidence            87  33344455554

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=86.30  Aligned_cols=77  Identities=22%  Similarity=0.411  Sum_probs=62.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+ |.+.+.|+++|..+.....+.... ++....|.|.++..+|+|.|+|.|.|    .+.++.
T Consensus         6 v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A            6 VRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQ-AGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             EEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEE-CSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             EEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEee-cCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            456789999999998 56 788899999999998877665543 34457899999999999999999855    456677


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        79 l~V~   82 (84)
T 2lu7_A           79 VSVE   82 (84)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7776

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=87.06  Aligned_cols=83  Identities=19%  Similarity=0.362  Sum_probs=67.5

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ++.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....          ...|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n   71 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHET----------KKLYMVPYVDLEHQGTYWCHVYN   71 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEE-CSSCCEEEEEETTEECTTCC----------SSEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceEEEECCCccEecCCCcEEEEEEec-cCCCCEEEEEcCCeeCCcCC----------CCeEEECCCCHHhCEEEEEEEEc
Confidence            45566666677799999999999985 78888999999998876543          35799999999999999999999


Q ss_pred             CCCcc-eeEEEEEEE
Q psy11132         89 MVAED-TQVQRLIVN  102 (243)
Q Consensus        89 ~~~~~-~~~~~l~v~  102 (243)
                      ..+.. +..+.|.|.
T Consensus        72 ~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           72 DRDSQDSKKVEIIID   86 (91)
T ss_dssp             SSCEEECCCEEEEEC
T ss_pred             CCCCEEeeeEEEEEe
Confidence            98863 355666664

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=6.2e-16  Score=99.54  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=80.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCce-eEEEECCeeecC--CCceEEEEee---eeceEEEEeecC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLT-IKWLKDGRYLDN--SAALSITHVD---QYNSMLVIDSVS   75 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~-v~W~~~~~~~~~--~~~~~~~~~~---~~~~~l~i~~~~   75 (243)
                      +.|.|..||.+.. +....+.+|+.+.|.|.+. +.|.+. +.|++++..+..  ..++.+....   .....|.|.+++
T Consensus         7 ~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~-g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   84 (122)
T 2cry_A            7 GTLTVNGPPIISS-TQTQHALHGEKGQIKCFIR-STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIV   84 (122)
T ss_dssp             CCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEEC-CSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCC
T ss_pred             EEEEEecCCCccC-CCeEEEecCCCEEEEEEEe-ecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCC
Confidence            4577889999888 7788899999999999995 777775 999999988875  3444443221   114589999999


Q ss_pred             CCCC-eeEEEEEEeCCCcceeEEEEEEEcC
Q psy11132         76 ARHS-GNYSCTVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        76 ~~d~-G~Y~C~~~~~~~~~~~~~~l~v~~~  104 (243)
                      .+|. |.|+|.|.|..|.....+.|.|..+
T Consensus        85 ~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           85 RADFQTIYNCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             HHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             hhhCCceEEEEEECCCCeEEEEEEEEECCC
Confidence            9999 9999999999998887777777643

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.56  E-value=6.5e-14  Score=87.98  Aligned_cols=91  Identities=21%  Similarity=0.397  Sum_probs=72.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.  +.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~-~~--p~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELS-KV--APVEWKKGPETLRDGGRYSLKQDG-TRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBS-SS--CCCEEESSSSBCCSSSSCEEEEET-TEEEEEESSCCTTTCSEEEEEET
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeC-CC--CeeEEEECCEECCCCCCEEEEecC-CEEEEEECCCCcccCEEEEEEEc
Confidence            578888888888999999999999984 44  589999999988877776655432 24679999999999999999993


Q ss_pred             eCCCcceeEEEEEEEcCCC
Q psy11132         88 NMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~  106 (243)
                          .....+.|.|..+|.
T Consensus        83 ----n~~~~~~l~V~~~p~   97 (108)
T 2dm7_A           83 ----QERTSATLTVRALPA   97 (108)
T ss_dssp             ----TEEEEEECEEECCCS
T ss_pred             ----CCEEEEEEEEecCCH
Confidence                345667788877554

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.3e-15  Score=92.78  Aligned_cols=91  Identities=16%  Similarity=0.304  Sum_probs=69.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC----ceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA----ALSITHVDQYNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .||.+...+.+..+.+|+.+.|.|.+. +.+ +.+.|++++..+....    ++.+... .....|.|.+++.+|+|.|+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~   83 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVS-EEG-AQVMWMKNGVELTREDSFKARYRFKKD-GKRHILIFSDVVQEDRGRYQ   83 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEES-CSS-CCCEEEESSCBCCCSCCSSCCCEEEEC-SSEEEEECSSCCGGGCSBEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEe-CCC-CEEEEEECCEECCCCCCcceeEEEEEC-CCEEEEEECCCChhhCEEEE
Confidence            456777777788899999999999995 666 7999999999887655    4444432 23568999999999999999


Q ss_pred             EEEEeCCCcceeEEEEEEEcCC
Q psy11132         84 CTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        84 C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      |.+.|    ....+.|.|..+|
T Consensus        84 C~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           84 VITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             EECSS----CEECCBEEEECCC
T ss_pred             EEEcC----CcEEEEEEEeCCC
Confidence            99976    3334556666543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.56  E-value=3.5e-15  Score=92.47  Aligned_cols=82  Identities=27%  Similarity=0.493  Sum_probs=65.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+...............+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   96 (100)
T 3caf_A           18 HAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   96 (100)
T ss_dssp             EEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEecCCCEEEEEEEc-cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEE
Confidence            346789999999999 5889999999999998875433211112223467999999999999999999999999888877


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      |.|
T Consensus        97 l~V   99 (100)
T 3caf_A           97 LDV   99 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=5.3e-16  Score=99.87  Aligned_cols=103  Identities=24%  Similarity=0.350  Sum_probs=79.3

Q ss_pred             eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCC--CCeeEEee---ccceeEEEE
Q psy11132         94 TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSI  167 (243)
Q Consensus        94 ~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i  167 (243)
                      +..+.|.|..+|.+.. + ....+.+|+.+.|.|.+ .|.|.|. +.|++++..+...  ..+.....   ....+.|.|
T Consensus         4 ~~~~~l~V~~~P~i~~-~-~~~~~~~G~~v~l~C~~-~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I   80 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS-T-QTQHALHGEKGQIKCFI-RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI   80 (122)
T ss_dssp             SCCCCCCCCSSCCEEE-E-CCCCCCTTSCCCCCEEE-CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred             ceEEEEEEecCCCccC-C-CeEEEecCCCEEEEEEE-eecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence            4456677778887766 3 33678899999999999 5888876 9999999887752  23333211   122568999


Q ss_pred             eecCCCCC-eeEEEEEEccCcceeeeEEEEEEe
Q psy11132        168 NSVSAAHS-GEYTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       168 ~~~~~~d~-g~y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      .++..+|. |.|+|.|.|..|.....+.|.|.+
T Consensus        81 ~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             TTCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             cCCChhhCCceEEEEEECCCCeEEEEEEEEECC
Confidence            99999998 999999999999998888888874

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.55  E-value=4.6e-15  Score=92.88  Aligned_cols=82  Identities=28%  Similarity=0.520  Sum_probs=69.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        24 ~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  101 (106)
T 1nct_A           24 MTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTT-TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT  101 (106)
T ss_dssp             EEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTTCSSEEEEE-CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEE
T ss_pred             EEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEE-CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEE
Confidence            456789999999999 589999999999998887665554433 334578999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus       102 l~V~  105 (106)
T 1nct_A          102 LTIQ  105 (106)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.55  E-value=2.3e-15  Score=103.28  Aligned_cols=109  Identities=16%  Similarity=0.263  Sum_probs=78.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+.|..++  ..+
T Consensus        14 ~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~~~~~s--~~~   79 (176)
T 1f2q_A           14 NRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQQVNES--EPV   79 (176)
T ss_dssp             SEEETTCCEEEECCT-TCC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECTTSSCC--CCE
T ss_pred             cceecCCcEEEEEeC-CCCCCcceEEEEECCeECCCC-----------ceEEEEeccceecCEEEEEEcCCcccc--ccE
Confidence            467899999999998 566654 69999999987643           467999999999999999999986654  345


Q ss_pred             EEEEEeec-CCCCCeeeeeccceeeeccCcc-cc--cccceEEeCCee
Q psy11132        194 KLQVKGNL-NRLPPSYTLVFSQASYMSTSYY-SF--EQDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~-~~~~p~~~~~~~~~~~~~~~~~-~~--~~~~W~~~~~~~  237 (243)
                      .+.|.... ...++...+..++.+.+.|... ..  +.+.|+++|..+
T Consensus        80 ~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~  127 (176)
T 1f2q_A           80 YLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL  127 (176)
T ss_dssp             EEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEEC
T ss_pred             EEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEE
Confidence            55555110 0012334556788889999773 23  489999998654

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=88.94  Aligned_cols=83  Identities=24%  Similarity=0.382  Sum_probs=67.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|+.+.|.|.+. +.| +.+.|++++..+....++.+.     ...|.|.+++..|+|.|+|.+.|..+....
T Consensus        10 p~~~~v~~G~~v~L~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   82 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLAESNRTRIT-----GEEVEVQDSVPADSGLYACVTSSPSGSDTT   82 (99)
T ss_dssp             EEECCBCTTSCEEEECCCC-SSC-CEEEEEESSSBCCCCSSEEEC-----SSEEEETTCCTTTCEEEEEEEEETTEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEec-CCC-CeEEEEECCEECCCCCcEEEE-----CCEEEEccCCHHHCEEEEEEEEeCCceEEE
Confidence            4566789999999999985 555 599999999888766555433     468999999999999999999999888777


Q ss_pred             EEEEEEEcCC
Q psy11132         96 VQRLIVNVPP  105 (243)
Q Consensus        96 ~~~l~v~~~p  105 (243)
                      .+.|.|...+
T Consensus        83 ~~~l~V~~~~   92 (99)
T 2cr3_A           83 YFSVNVSDAL   92 (99)
T ss_dssp             EEEECBCSCC
T ss_pred             EEEEEEecCC
Confidence            7777776544

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.55  E-value=2e-14  Score=100.88  Aligned_cols=110  Identities=14%  Similarity=0.218  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+. +.|++++..+...           ...|.|.+++.+|+|.|+|.+.|.  .....+
T Consensus        17 ~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~-----------~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~   82 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQ-----------ASSYFIDAATVDDSGEYRCQTQLS--TLSDPV   82 (204)
T ss_dssp             SEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCC-----------SSEEEESSCCGGGCEEEEEEETTS--BCCCCE
T ss_pred             eEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccC-----------ccEEEEecccccCCEEEEEEeCCC--cccccE
Confidence            457789999999999 5766554 9999999987654           267999999999999999999884  344456


Q ss_pred             EEEEEeec-CCCCCeeeeeccceeeeccCcccc---cccceEEeCCeeE
Q psy11132        194 KLQVKGNL-NRLPPSYTLVFSQASYMSTSYYSF---EQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~-~~~~p~~~~~~~~~~~~~~~~~~~---~~~~W~~~~~~~~  238 (243)
                      .|.|...+ ...+|...+..++.+.+.|.....   +.+.|+++|..+.
T Consensus        83 ~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~  131 (204)
T 3sgj_C           83 QLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK  131 (204)
T ss_dssp             EEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             EEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEee
Confidence            66666211 012233456678888999987443   4799999997653

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.55  E-value=7.2e-15  Score=101.70  Aligned_cols=106  Identities=14%  Similarity=0.265  Sum_probs=78.0

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEee-cCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINS-VSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      ..|+.+.|.|.+ .+ ++ .+.|+++|..+....          ...|.|.+ +..+|+|.|+|.|.|..|.....+.+.
T Consensus        12 ~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~~~~----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           12 ISGTSVELTCPL-DS-DE-NLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EETTEEEEECSS-CC-CT-TCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             eCCcEEEEEEeC-CC-CC-ceEEEECCEECCCCC----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            569999999998 45 43 499999999887541          34699999 999999999999999988855555554


Q ss_pred             EEeecCCC-------------CC-----------ee---eeeccceeeeccCcccccccceEEeCCee
Q psy11132        197 VKGNLNRL-------------PP-----------SY---TLVFSQASYMSTSYYSFEQDSWMIDNENY  237 (243)
Q Consensus       197 v~~~~~~~-------------~p-----------~~---~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  237 (243)
                      |.......             +|           ..   .+..++.+.+.|.. .-+.+.|++||..+
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-p~p~i~W~k~g~~i  145 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-TDKTIKWLKDGSII  145 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-SCSCEEEEETTEEC
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC-CCCeEEEEECCEEC
Confidence            43221100             00           01   12367889999998 66799999999765

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=7.1e-14  Score=87.57  Aligned_cols=92  Identities=14%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC----------ceEEEEeeeeceEEEEeecCCC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA----------ALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      .+|.+.....+..+.+|+++.|.|.+. +  .+.+.|++||.++....          ++.+... ...++|.|.+++.+
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs-~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~-g~~~~L~I~~v~~~   82 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLS-T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK-GLQHRLILHAVKHQ   82 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEES-S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB-TTEEEEEEESCCST
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEEC-C--CCeEEEEECCEECccCcccccccccccEEEEEeC-CcEEEEEECCCCHH
Confidence            346787778899999999999999995 4  55899999999998776          5555432 22468999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      |+|.|+|..-+   ....++.|.|..+|.
T Consensus        83 D~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           83 DSGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             TCSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             HCccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            99999875543   334578899987664

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.55  E-value=6.4e-14  Score=98.92  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++.  +....            ...++.... ......|.|.+++.+|+|.|.|
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   87 (213)
T 3mj8_L           10 VSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SGNMATLTISKAQAGDEADYYC   87 (213)
T ss_dssp             EEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cCCEEEEEECCCChhhCEEEEE
Confidence            456789999999999 5889999999982  21110            111222222 3346789999999999999999


Q ss_pred             EEEccCc---ceeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc--c--ccceEEeCCee
Q psy11132        181 VASNTAA---QARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF--E--QDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g---~~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~--~--~~~W~~~~~~~  237 (243)
                      .|.|..+   .....+.|.|..... .+|.+.+.+       ++.+.+.|.....  +  .+.|+++|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L           88 QSWDGTNSAWVFGSGTKVTVLGQPN-AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             EEEETTTTEEEEBCCEEEEEECSCC-BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EeccCCcceeEEcCceEEEEeCCCC-CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            9999887   345567777764322 566665543       7788899987764  2  89999998865

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.55  E-value=3.7e-14  Score=86.93  Aligned_cols=83  Identities=25%  Similarity=0.400  Sum_probs=68.1

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|+.+.|.|.+. +  .+.+.|++++..+....+....     ...|.|.+++.+|+|.|+|.+.|..+....
T Consensus         8 p~~~~v~~G~~~~l~C~~~-~--~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLK-D--AAVISWTKDGVHLGPNNRTVLI-----GEYLQIKGATPRDSGLYACTAARTVDSETW   79 (95)
T ss_dssp             CEEEEECTTSCEEEECCCC-T--TCEEEEEETTEEECCCSSEEEE-----TTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCcEEECCCCEEEEEEEeC-C--CCEEEEEECCEECCCCceEEEe-----CCEEEECcCCcccCEEEEEEEccCCCcEEE
Confidence            4556788999999999985 4  4599999999998776665443     568999999999999999999999998888


Q ss_pred             EEEEEEEcCCC
Q psy11132         96 VQRLIVNVPPK  106 (243)
Q Consensus        96 ~~~l~v~~~p~  106 (243)
                      .+.|.|..++.
T Consensus        80 ~~~l~V~~~~~   90 (95)
T 4hwu_A           80 IFMVNVTDAAE   90 (95)
T ss_dssp             EEEEEECCC--
T ss_pred             EEEEEEeCCcc
Confidence            88888876543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.55  E-value=1.3e-14  Score=106.30  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=80.8

Q ss_pred             cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC---
Q psy11132         74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS---  148 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~---  148 (243)
                      .++.|.+.|.|.+.+..+.......+.|..+|.       ...+.+|+++.|.|.+ .+ +.+.+.|++..  ....   
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~-------~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQTPR-------YLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             -------------------------CCCEEECS-------EEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEeCCC-------eEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEE
Confidence            357889999999988766544333333333222       1346789999999998 34 67899999822  1100   


Q ss_pred             ---CCC----------CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc----ceeeeEEEEEEeec-CCCCCeeee
Q psy11132        149 ---PRF----------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA----QARYSSKLQVKGNL-NRLPPSYTL  210 (243)
Q Consensus       149 ---~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~~~~~l~v~~~~-~~~~p~~~~  210 (243)
                         ...          +............|.|.+++.+|+|.|.|.+.+..+    .......+.|...+ ...+|.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~  153 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV  153 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence               000          111111123357899999999999999999997432    22344567776422 223565544


Q ss_pred             e--------ccceeeeccCccc-cc---ccceEEeCCee
Q psy11132        211 V--------FSQASYMSTSYYS-FE---QDSWMIDNENY  237 (243)
Q Consensus       211 ~--------~~~~~~~~~~~~~-~~---~~~W~~~~~~~  237 (243)
                      .        .+..+.+.|.... .|   .+.|++||+.+
T Consensus       154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l  192 (270)
T 3qib_D          154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  192 (270)
T ss_dssp             EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEEC
Confidence            2        2678889998766 33   78999998765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.55  E-value=2e-14  Score=100.67  Aligned_cols=120  Identities=14%  Similarity=0.133  Sum_probs=84.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCC-----CEEEEEe-CCEecCCCCCeeEEee--ccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPP-----LTIRWLK-DGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~-~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+.+.|.|.+ .+.|.     +.+.|++ ++.......+......  ......|.|.+++.+|+|.|+|.|.|..
T Consensus        12 v~v~~G~~v~L~C~~-~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   90 (202)
T 3bp6_B           12 YTVDVGSSVSLECDF-DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA   90 (202)
T ss_dssp             EEEETTSCEEEEEEE-CTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEeCCCcEEEEEEe-cCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCC
Confidence            345789999999999 57765     8999999 4443333333222211  1135789999999999999999999999


Q ss_pred             cceeeeEEEEEEeecCCCCCeeee---eccceeeeccCcccc--cccceEEeCCee
Q psy11132        187 AQARYSSKLQVKGNLNRLPPSYTL---VFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       187 g~~~~~~~l~v~~~~~~~~p~~~~---~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      +.....+.|.|....  ..|.+.+   ..+..+.+.|...+.  +.+.|++++..+
T Consensus        91 ~~~~~~~~l~V~~~~--~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           91 AWDYKYLTVKVKASY--MRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             EEEEEEEEEEEEBCC--CCEEEEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             CcceEEEEEEecCCC--CcccEEEEecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence            888788888887432  3344433   457788899987655  489999987654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.54  E-value=3.5e-14  Score=99.04  Aligned_cols=108  Identities=17%  Similarity=0.246  Sum_probs=81.5

Q ss_pred             CCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      .+..|+++.|.|.+  +.|.+  .+.|++.+..+.   ..   ........|.|.+++.+|+|.|.|.|.|..+.....+
T Consensus        18 ~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l~---~~---~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~   89 (210)
T 1gsm_A           18 AVALGASRQLTCRL--ACADRGASVQWRGLDTSLG---AV---QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   89 (210)
T ss_dssp             EEETTCCEEEEEEE--CCSSTTCEEEEESSTTTTC---CE---EEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEC--CCCCCCcceEEeecccccC---cE---EecCCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence            56789999999998  55656  999998654431   11   1123357899999999999999999999988888889


Q ss_pred             EEEEEeecCCCCCeeee-e-----ccceeeeccCcccc-c------ccceEEeCCee
Q psy11132        194 KLQVKGNLNRLPPSYTL-V-----FSQASYMSTSYYSF-E------QDSWMIDNENY  237 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~~~-~-----~~~~~~~~~~~~~~-~------~~~W~~~~~~~  237 (243)
                      .|.|.     .+|.... .     +++.. ++|.+... |      .|.|+|||+.+
T Consensus        90 ~ltV~-----~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L  140 (210)
T 1gsm_A           90 QLLVY-----AFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQEL  140 (210)
T ss_dssp             EEEEE-----BCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEEC
T ss_pred             EEEEE-----ecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEc
Confidence            99998     4554322 2     45566 99987654 3      69999999876

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.54  E-value=7.9e-14  Score=97.72  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=82.2

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCE-ecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGK-PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      .+|+.+.|.|.+ .|.|.+.+.|+++.. .+.   ...  ........|.|.+++.+|+|.|.|.|.|..|.....+.|.
T Consensus        14 ~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~~---~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~   87 (202)
T 1vca_A           14 QIGDSVSLTCST-TGCESPFFSWRTQIDSPLN---GKV--TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (202)
T ss_dssp             ETTSCEEEEEEE-ESCSSCEEEEEETTCCCCS---SEE--EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             cCCCcEEEEEee-cCCCCCeEEEECCCCCCcc---ceE--EEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEE
Confidence            479999999999 588999999998432 111   111  1122346799999999999999999999988877788888


Q ss_pred             EEeecCC--CCCeeeeeccceeeeccCcccc-c----ccceEEeCCeeE
Q psy11132        197 VKGNLNR--LPPSYTLVFSQASYMSTSYYSF-E----QDSWMIDNENYV  238 (243)
Q Consensus       197 v~~~~~~--~~p~~~~~~~~~~~~~~~~~~~-~----~~~W~~~~~~~~  238 (243)
                      |...+..  .++...+..++.+.+.|..... +    .+.|+++|..+.
T Consensus        88 V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           88 IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             EEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             EEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            8732210  0111235567888899987653 2    689999997653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.54  E-value=1.1e-14  Score=102.78  Aligned_cols=122  Identities=20%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccce--eEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFS--SLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....    .......+..  ..+.|.++..+|+|.|+|.|.|..|.
T Consensus        19 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~   97 (212)
T 2v9r_A           19 LIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE   97 (212)
T ss_dssp             EEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEE
T ss_pred             eEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCc
Confidence            456789999999999 5888899999999988764321    1111111111  12445667899999999999999886


Q ss_pred             e-eeeEEEEEEeecC---CCCCeeeeeccceeeeccCc-ccc--cccceEEeCCee
Q psy11132        189 A-RYSSKLQVKGNLN---RLPPSYTLVFSQASYMSTSY-YSF--EQDSWMIDNENY  237 (243)
Q Consensus       189 ~-~~~~~l~v~~~~~---~~~p~~~~~~~~~~~~~~~~-~~~--~~~~W~~~~~~~  237 (243)
                      . ...+.+.|...+.   ..+....+..++.+.+.|.. ...  +.+.|+++|..+
T Consensus        98 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l  153 (212)
T 2v9r_A           98 AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL  153 (212)
T ss_dssp             EECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEE
T ss_pred             eeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccC
Confidence            5 4566676654321   22344567778889999976 444  489999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2.5e-16  Score=119.72  Aligned_cols=147  Identities=18%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  157 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  157 (243)
                      +.|.|+|.+.+.....    .+.+..+|.+...+ ....+.+|+.+.|.|.+ .|.|.+.+.|++++..+......   .
T Consensus       136 ~~~~~~C~~~~~l~~l----~~~~c~~P~i~~~~-~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~---~  206 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAHM----PNASCGVPTLKVQV-PNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMK---S  206 (347)
T ss_dssp             GGGCCCCSSSSCSSCC----CCTTCCCCEEEEEC-CSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECC---C
T ss_pred             cccCCCCCCChHHhcC----CcccCCCCceeccC-CceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeeccccc---c
Confidence            4688999776522211    11222344444333 33677899999999999 68999999999998764422111   1


Q ss_pred             eccceeEEEEeecCCCCCe-eEEEEEEccCcceeeeEEEEEEeecCCCCCee---eeeccceeeeccCccccc--ccceE
Q psy11132        158 LDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQVKGNLNRLPPSY---TLVFSQASYMSTSYYSFE--QDSWM  231 (243)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~--~~~W~  231 (243)
                      .....+.|.|.++..+|+| .|+|.|.|..|.....+.+.|.     .||.+   ....+..+.+.|...+.|  .++|+
T Consensus       207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~-----~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~  281 (347)
T 2ifg_A          207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS-----FPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL  281 (347)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB-----EEEEEEECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred             eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc-----CCCeeeeccCccCceEEEEEEeeecCCCcEEEE
Confidence            1233578999999999999 9999999999988887777776     45543   223467788899876654  89999


Q ss_pred             EeCCeeE
Q psy11132        232 IDNENYV  238 (243)
Q Consensus       232 ~~~~~~~  238 (243)
                      ++|..+.
T Consensus       282 ~~g~~l~  288 (347)
T 2ifg_A          282 FNGSVLN  288 (347)
T ss_dssp             ETTEECC
T ss_pred             eCCEECC
Confidence            9986543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=1.5e-13  Score=87.63  Aligned_cols=84  Identities=17%  Similarity=0.280  Sum_probs=63.8

Q ss_pred             CCCCCCCcEEEEEEeecCC---CCCEEEEEeCCEec-C--CCCCeeEEe-ec----cceeEEEEeecCCCCCeeEEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGD---PPLTIRWLKDGKPL-S--PRFPVNVSD-LD----SFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~~~~~-~--~~~~~~~~~-~~----~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..+.+|+.+.|.|.+. +.   |.|.+.|||+.... .  ......+.. ..    .....|.|.++..+|+|.|+|.|.
T Consensus        17 v~V~eG~~v~L~C~v~-g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevs   95 (126)
T 2dav_A           17 GTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   95 (126)
T ss_dssp             CEEETTCCEEEEEEEE-CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEEe-ccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEE
Confidence            5678999999999994 53   88999999974211 1  112222221 11    125789999999999999999999


Q ss_pred             ccCcceeeeEEEEEEe
Q psy11132        184 NTAAQARYSSKLQVKG  199 (243)
Q Consensus       184 n~~g~~~~~~~l~v~~  199 (243)
                      |..|..+..++|.|..
T Consensus        96 n~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           96 YKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CSSCEEEECCEEEEEC
T ss_pred             eCCCcEEEEEEEEEEe
Confidence            9999999999999994

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.53  E-value=8.5e-15  Score=100.31  Aligned_cols=110  Identities=14%  Similarity=0.234  Sum_probs=80.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.|.+. +.|++++..+...           ...|.|.+++.+|+|.|+|.+.|..+  ...+
T Consensus        17 ~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~~~-----------~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~   82 (175)
T 1fnl_A           17 YSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQTNLSTL--SDPV   82 (175)
T ss_dssp             SEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEECSSSCC--CCCE
T ss_pred             eeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEccCC-----------ceEEEEeCCCcccCEEEEEEeeCCcc--cccE
Confidence            357789999999999 5666555 8999999877532           46799999999999999999998554  4455


Q ss_pred             EEEEEeec-CCCCCeeeeeccceeeeccCcccc---cccceEEeCCeeE
Q psy11132        194 KLQVKGNL-NRLPPSYTLVFSQASYMSTSYYSF---EQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~-~~~~p~~~~~~~~~~~~~~~~~~~---~~~~W~~~~~~~~  238 (243)
                      .+.|.... ...++...+..++.+.+.|.....   +.+.|+++|..+.
T Consensus        83 ~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~  131 (175)
T 1fnl_A           83 QLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK  131 (175)
T ss_dssp             EEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             EEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc
Confidence            66665211 011233456678888899976533   3899999997653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.53  E-value=2e-14  Score=101.27  Aligned_cols=117  Identities=21%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.            ...+....     ...|.|.+++.+|+|.|+|.|
T Consensus        11 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~L~i~~v~~~D~G~Y~C~~   84 (212)
T 1f97_A           11 VQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-----SSGITFSSVTRKDNGEYTCMV   84 (212)
T ss_dssp             EEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-----TTEEEESCCCGGGCEEEEEEE
T ss_pred             eEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-----ceeEEEcccCcccCeEEEEEE
Confidence            446789999999999 588999999999775521            11111111     267999999999999999999


Q ss_pred             EccCc--ceeeeEEEEEEeecCC--CCCeeeeeccceeeeccC-cccc--cccceEEeCC-ee
Q psy11132        183 SNTAA--QARYSSKLQVKGNLNR--LPPSYTLVFSQASYMSTS-YYSF--EQDSWMIDNE-NY  237 (243)
Q Consensus       183 ~n~~g--~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~--~~~~W~~~~~-~~  237 (243)
                      .|..|  .....+.|.|...+..  .+....+..++.+.+.|. ....  +.+.|++++. .+
T Consensus        85 ~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l  147 (212)
T 1f97_A           85 SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML  147 (212)
T ss_dssp             EETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             EccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence            99877  4456677777632210  011124556778889998 4544  4899999998 54

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.53  E-value=2.1e-14  Score=101.80  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=78.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecccee--EEEEeecCCCCCeeEEEEEEccCcce--e
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS--LLSINSVSAAHSGEYTCVASNTAAQA--R  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~n~~g~~--~  190 (243)
                      ..+.+|++++|.|.+ .+ +.+.+.|+|+|..+.......  .......  .|.|.+++.+|+|.|+|.|.|..|..  +
T Consensus        18 ~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s   93 (218)
T 1uct_A           18 PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIGRR--LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   93 (218)
T ss_dssp             SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECSEE--CC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             CccCCCCCEEEEEEc-CC-CCCEEEEEECCCccccccccc--CCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeec
Confidence            356789999999998 45 678999999886553211100  0011134  89999999999999999999987643  3


Q ss_pred             eeEEEEEEeecCCCCCee------eeeccceeeeccCccc--ccccceEEeCCee
Q psy11132        191 YSSKLQVKGNLNRLPPSY------TLVFSQASYMSTSYYS--FEQDSWMIDNENY  237 (243)
Q Consensus       191 ~~~~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~--~~~~~W~~~~~~~  237 (243)
                      ..+.|.|.+..  .+|.+      .+..++.+.+.|....  .+.+.|+|+|..+
T Consensus        94 ~~~~l~V~~~~--~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~  146 (218)
T 1uct_A           94 DTLELVVTGLY--GKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELS  146 (218)
T ss_dssp             CCEEEEEECSS--CCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSS
T ss_pred             CCEEEEEcCcc--cCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcc
Confidence            44667766422  23333      4456778888993332  3479999998654

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.6e-15  Score=95.52  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=64.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......+.........|.|.++..+|+|.|+|.    .|.....+.
T Consensus        23 ~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~   97 (115)
T 2cr6_A           23 VDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAA   97 (115)
T ss_dssp             EEEETTSCEECCCEE-ESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE----ETTEECCEE
T ss_pred             EEEeCCCcEEEEEEE-cCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE----ECCeeEEEE
Confidence            567899999999999 588989999999999887765544432334456799999999999999999    366777788


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        98 L~V~  101 (115)
T 2cr6_A           98 LRVT  101 (115)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9988

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.53  E-value=7.7e-14  Score=89.90  Aligned_cols=93  Identities=17%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeec--------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD--------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..+....+.+|++++|.|.+. +.+.+.+.|++++..+.        ...++..........+|.|.+++.+|+|.|+|.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            6 NHTETITVEEGQTLTLKCVTS-LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             CSEEEEEEETTSCEEEEEECC-CCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCccEEEcCCCCEEEEeEEe-ccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEE
Confidence            345567789999999999995 77778999998665321        334444443333357899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEEcCCCcc
Q psy11132         86 VRNMVAEDTQVQRLIVNVPPKIE  108 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~~~p~~~  108 (243)
                      +.+. +.....+.|.|..+|...
T Consensus        85 a~n~-g~~~~~~~l~V~~~P~~~  106 (124)
T 3rbg_A           85 HYSD-SVSTKEVKVIVLATMKGE  106 (124)
T ss_dssp             EESS-SEEEEEEEEEEECC----
T ss_pred             EEcC-CCCcEEEEEEEEeCCCCC
Confidence            9998 878888899998877644

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.53  E-value=4.8e-14  Score=86.96  Aligned_cols=88  Identities=25%  Similarity=0.419  Sum_probs=66.5

Q ss_pred             CCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ||.+... +....+.+|+.+.|.|.+..+.|.+.+.|++++.........      .....|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~   82 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM------DFNGILTIRNVQPSDAGTYVCTGS   82 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE------EETTEEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee------cCCCEEEEeCCChhhCEEEEEEec
Confidence            3444433 455678999999999999646788899999986443332211      125689999999999999999999


Q ss_pred             eCCCcceeEEEEEEE
Q psy11132         88 NMVAEDTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~  102 (243)
                      |..+.....+.|.|.
T Consensus        83 n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           83 NMFAMDQGTATLHVQ   97 (98)
T ss_dssp             CSSCEEEEEEEEEEC
T ss_pred             CCCCccccEEEEEEe
Confidence            999988777777764

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=1.2e-13  Score=85.90  Aligned_cols=88  Identities=19%  Similarity=0.347  Sum_probs=65.7

Q ss_pred             cCCCccCCCCC-cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .+|.|.....+ ..+.+|+.+.|.|.+  +.|.+.+.|+++|..+... .++.+...+ ....|.|.+++.+|+|.|+|.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~--~~p~~~v~W~k~g~~l~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~   90 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESIG-AKRTLTISQCSLADDAAYQCV   90 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC--SSSSSCCEEEESSSEECCCSSSSEEEEET-TEEEEEECSCSSSSCEEEEEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE--cCCCCEEEEEECCEECCCCCCeEEEEecC-CEEEEEECCCCcccCEEEEEE
Confidence            45666655555 779999999999998  4677789999999998776 565554322 245899999999999999999


Q ss_pred             EEeCCCcceeEEEEEEE
Q psy11132         86 VRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~v~  102 (243)
                      +.    .......|.|.
T Consensus        91 a~----~~~~~~~l~V~  103 (104)
T 1pd6_A           91 VG----GEKCSTELFVK  103 (104)
T ss_dssp             ET----TEEECCEEEEE
T ss_pred             EC----CCcEEEEEEEe
Confidence            93    23334445543

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.52  E-value=6.4e-14  Score=90.04  Aligned_cols=93  Identities=18%  Similarity=0.302  Sum_probs=67.4

Q ss_pred             CcccccCCeEEEEEEeeCC--CCCceeEEEECCeeecC-----CCceEEEEe--eeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         18 ERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDN-----SAALSITHV--DQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~~~~-----~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      .+.+.+|+.+.|.|.+. +  .+.+.+.|++++..+..     .........  ....+.|.|.+++.+|+|.|+|.+.|
T Consensus        17 ~v~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           17 GIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             CEEEEETCCEEEEEEEE-ECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CEEEecCCeEEEEEEEE-cCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            34688999999999996 4  44568999998874421     111111110  12356899999999999999999999


Q ss_pred             CCCcceeEEEEEEEcCCCccccc
Q psy11132         89 MVAEDTQVQRLIVNVPPKIESFA  111 (243)
Q Consensus        89 ~~~~~~~~~~l~v~~~p~~~~~~  111 (243)
                      ..+.....+.|.|..+|.+...+
T Consensus        96 ~~g~~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             SSCEEEEEEEEEEEEEECC----
T ss_pred             CCCceEEEEEEEEeccCeEEeec
Confidence            99988889999999888765443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=100.22  Aligned_cols=120  Identities=16%  Similarity=0.200  Sum_probs=79.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee--ee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR--YS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~  192 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........  ..+.|.|.++..+|+|.|+|.+.|..+...  ..
T Consensus        12 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   88 (189)
T 2v5t_A           12 QEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAML--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD   88 (189)
T ss_dssp             EEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEEC--TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEe--cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence            456789999999999 5888999999999887764222111111  134699999999999999999999875433  34


Q ss_pred             EEEEEEeec--CCCCC--eeeeeccceeeeccCccccc--ccceEEeCCee
Q psy11132        193 SKLQVKGNL--NRLPP--SYTLVFSQASYMSTSYYSFE--QDSWMIDNENY  237 (243)
Q Consensus       193 ~~l~v~~~~--~~~~p--~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~  237 (243)
                      +.+.+...+  ...+.  ...+..+..+.+.|.....+  .+.|+++|..+
T Consensus        89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~  139 (189)
T 2v5t_A           89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI  139 (189)
T ss_dssp             EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEEC
T ss_pred             EEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEEC
Confidence            555555222  11111  23445678888999876554  89999998654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=5.4e-14  Score=107.33  Aligned_cols=104  Identities=15%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC----CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS----AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +....+.+|+.+.|.|.+. + |.+.+.|++++..+...    .++.+     ..++|.|.+++.+|+|.|+|.|.|..|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~-g-p~p~i~W~~~~~~~~~~~~~~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTK-Q-QGMTKVWVSPSNEQVLSQGSNGSVSV-----RNGDLFFKKVQVEDGGVYTCYAMGETF  325 (361)
T ss_dssp             CCCCEEETTCCEEECCCCS-S-TTCEEEEECTTSCBCCSCCSSSSEEE-----ETTEEEESSCCTTSCEEEEEEEECSSC
T ss_pred             ccCceecCCCeEEEEeEee-C-CCCeEEEEeCCCeeEeecccCCceEe-----ecCeEEEeecCcccCEEEEEEEecCCC
Confidence            4466899999999999994 6 77899999977654332    13333     256799999999999999999999988


Q ss_pred             cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEE
Q psy11132         92 EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIR  139 (243)
Q Consensus        92 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  139 (243)
                      ..+..+.|.|...+            ..|..+.|.|.+ .|.|.|.+.
T Consensus       326 ~~~~~~~l~V~~~~------------~~g~~~~l~C~~-~g~P~P~i~  360 (361)
T 2xot_A          326 NETLSVELKVYNFT------------LHGHHDTLNAAA-DPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEEEESSC------------CC--------------------
T ss_pred             ccEEEEEEEEEeee------------ccCCceEEEEEe-CCCCCCccc
Confidence            88888888885422            578899999999 688988763

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.52  E-value=1.2e-13  Score=84.07  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=61.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+ +++.+.|+++|..+.....+.+.. ++....|.|.++..+|+|.|+|.|.|.    ..++.
T Consensus        15 ~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~~~~~~i~~-~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~   87 (93)
T 1waa_A           15 VEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAASPDCEIIE-DGKKHILILHNCQLGMTGEVSFQAANT----KSAAN   87 (93)
T ss_dssp             EEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCCBTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEETTE----EEEEE
T ss_pred             eEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcCCCCEEEEE-ECCEEEEEECCCChhhCEEEEEEECCC----cEEEE
Confidence            567899999999999 45 457899999999998766655443 344578999999999999999999884    45666


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        88 L~V~   91 (93)
T 1waa_A           88 LKVK   91 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=87.53  Aligned_cols=98  Identities=23%  Similarity=0.355  Sum_probs=72.8

Q ss_pred             cceeEEEEEEEcCC-CccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec
Q psy11132         92 EDTQVQRLIVNVPP-KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus        92 ~~~~~~~l~v~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  170 (243)
                      .....+.|.|...| .+... .....+.+|+++.|.|.+ .+.  +.+.|++++..+.....+.... ++....|.|.++
T Consensus         6 ~~~~~~~l~V~~~pp~~~~~-~~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~I~~v   80 (113)
T 2edh_A            6 SGRTSAMLTVRALPIKFTEG-LRNEEATEGATAVLRCEL-SKM--APVEWWKGHETLRDGDRHSLRQ-DGARCELQIRGL   80 (113)
T ss_dssp             CCCCCCCCCCCCSCCCEEEC-CCCCEECTTSCEEEEEEE-SSC--CCCEEEESSSBCCCSSSEEEEE-ETTEEEEEECSC
T ss_pred             CCcEEEEEEEEcCCCccccc-CCceEEeCCCeEEEEEEE-CCC--CcEEEEECCEECCCCCcEEEEE-CCCEEEEEECCC
Confidence            34445566776544 44332 333567899999999999 454  6899999999988766555443 333568999999


Q ss_pred             CCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        171 SAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ..+|+|.|+|.|    +.....+.|.|.
T Consensus        81 ~~~D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           81 VAEDAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             CSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred             ChhhCEEEEEEe----CCCCEEEEEEEe
Confidence            999999999999    667777888888

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.51  E-value=1.4e-13  Score=96.93  Aligned_cols=92  Identities=25%  Similarity=0.421  Sum_probs=76.7

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.........|.|.+++.+|.|.|+|.+.|..|
T Consensus       120 ~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  198 (212)
T 2r15_A          120 LGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG  198 (212)
T ss_dssp             EEBCCSEEEEETTCCEEEEEEEE-CSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccCCCcEEEccCCeEEEEEEEc-CCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence            33345567789999999999995 88888999999999998877766655434457899999999999999999999999


Q ss_pred             cceeEEEEEEEcC
Q psy11132         92 EDTQVQRLIVNVP  104 (243)
Q Consensus        92 ~~~~~~~l~v~~~  104 (243)
                      .....+.|.|..|
T Consensus       199 ~~~~~~~l~V~~P  211 (212)
T 2r15_A          199 SETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             cEEEEEEEEEEcc
Confidence            8888888888743

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.51  E-value=2.7e-13  Score=89.82  Aligned_cols=96  Identities=18%  Similarity=0.332  Sum_probs=72.3

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE---------CCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK---------DGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ++.+...+....+.+|++++|.|.+. +.+.+.+.|++         ++..+ ...++..........+|.|.+++.+|+
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~-~~~~~~i~W~~~~~~~i~~~~~~~~-~~~r~~~~~~~~~~~~L~I~~v~~~Ds  115 (145)
T 1z9m_A           38 QDDSQPWTSDETVVAGGTVVLKCQVK-DHEDSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTSTPHELSISISNVALADE  115 (145)
T ss_dssp             CCTTCCBCCCEEEETTSCEEEEEECS-CCTTCCEEEECTTCCEEEETTEECS-CCTTEEEEEECSSEEEEEECSCCGGGC
T ss_pred             ccceecCCceEEEEcCCCEEEEEEEc-CCCCcEEEEECCCCcEEEECCceec-ccCCEEEecCCCCeEEEEECCCChhhC
Confidence            34445557778899999999999995 66677999994         33322 234444443333467899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcCCCc
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |.|+|.+.+. +.....+.|.|..+|..
T Consensus       116 G~Y~C~~~n~-~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A          116 GEYTCSIFTM-PVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             EEEEEEECSS-SCEEEEEEEEEECCCC-
T ss_pred             EEEEEEEEcC-CCceEEEEEEEEeCCCC
Confidence            9999999998 87888889999887754

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.51  E-value=2.8e-14  Score=91.70  Aligned_cols=92  Identities=22%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             CCCCCCcEEEEEEeecC--CCCCEEEEEeCCEecCC-----CCCeeEEee--ccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        116 GLPEGARTRVICGVTHG--DPPLTIRWLKDGKPLSP-----RFPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~~~~~~-----~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .+.+|+++.|.|.+. |  .|.+.+.|++++..+..     .........  ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus        19 ~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           19 ELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEETCCEEEEEEEE-ECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEecCCeEEEEEEEE-cCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            456899999999994 6  45679999998874431     111111110  1135679999999999999999999999


Q ss_pred             cceeeeEEEEEEeecCCCCCeeeeecc
Q psy11132        187 AQARYSSKLQVKGNLNRLPPSYTLVFS  213 (243)
Q Consensus       187 g~~~~~~~l~v~~~~~~~~p~~~~~~~  213 (243)
                      |.....+.|.|.     .+|.+.+.+.
T Consensus        98 g~~~~~~~l~V~-----~~p~i~~~p~  119 (122)
T 3s35_X           98 MTKKNSTFVRVH-----EKPFVAFGSG  119 (122)
T ss_dssp             CEEEEEEEEEEE-----EEECC-----
T ss_pred             CceEEEEEEEEe-----ccCeEEeecC
Confidence            999999999998     5666655543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.51  E-value=6.4e-14  Score=95.98  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             CCCCCcEEEEEEeec-CCCCCEEEEEeCCEecC----------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        117 LPEGARTRVICGVTH-GDPPLTIRWLKDGKPLS----------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~-~~p~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      +.+|+.+.|.|.... ..+.+.+.|++++..+.          ...+....    ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~----~~gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL----ANGDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC----TTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC----CCCcEEEcccccccCEEEEEEEEeC
Confidence            468999999994322 25567999999986542          11111111    1245999999999999999999999


Q ss_pred             Ccce--eeeEEEEEEeecCCCCCeeeeeccceeeeccCcccc--cccceEEeCCeeE
Q psy11132        186 AAQA--RYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF--EQDSWMIDNENYV  238 (243)
Q Consensus       186 ~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~~  238 (243)
                      .|..  ...+.|.|...  ..+|.+... ...+.+.|.....  +.++|+++|+.+.
T Consensus        84 ~g~~~~~~~~~l~V~~~--~~~p~i~~~-~~~v~L~C~~~g~p~p~i~W~~~g~~l~  137 (176)
T 1hng_A           84 NGTRILNKALDLRILEM--VSKPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLR  137 (176)
T ss_dssp             TCCEEEEEEEEEEEECC--CCCCEEEEE-TTTTEEEEECSSCSSCEEEEEETTEEEE
T ss_pred             CCCEEEEEEEEEEEeCC--CCCCEEEec-CCcEEEEEEecCCCCcEEEEEECCEECC
Confidence            9886  56677777632  234555543 3346788866544  5899999997664

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=87.65  Aligned_cols=84  Identities=18%  Similarity=0.395  Sum_probs=66.5

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+....+.+|+.++|.|.+. +.|.+.+.|++++..+....          ...|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~   77 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPP----------SPVLILPEIGPQDQGTYSCVAT   77 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCS-SCSSCCCCCEESSSBCSSCC----------CSEEEEESCCTTTCEEEECEEC
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEc-cCCCCEEEEEECCEECcCCC----------CCEEEECCCCcccCEEEEEEEE
Confidence            356666667778899999999999994 77878999999998776532          4679999999999999999999


Q ss_pred             eCCCc--ceeEEEEEEE
Q psy11132         88 NMVAE--DTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~--~~~~~~l~v~  102 (243)
                      |..+.  .+..+.|.|.
T Consensus        78 n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           78 HSSHGPQESRAVSISII   94 (96)
T ss_dssp             CSSCCCEECCCEEEEEC
T ss_pred             eCCCCcEEEEEEEEEEe
Confidence            96554  3445555554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.50  E-value=9.2e-14  Score=99.09  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCC---CEEEEEeCCEec-----------CC------CCCeeEEe--eccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPP---LTIRWLKDGKPL-----------SP------RFPVNVSD--LDSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~-----------~~------~~~~~~~~--~~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+. +.+.   ..+.|+|++...           ..      ..+.....  .......|.|.+++.
T Consensus        14 V~v~~G~~v~L~C~v~-~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           14 ILAMVGEDADLPCHLF-PTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             EEEETTSCEEEEEEEE-SCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             EEEEcCCcEEEEEEEE-CCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            3456899999999984 5443   379999876421           10      00111111  122357899999999


Q ss_pred             CCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCccc---ccccceEEeCCe
Q psy11132        173 AHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYS---FEQDSWMIDNEN  236 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~W~~~~~~  236 (243)
                      +|+|.|+|.|.|..|.....+.+.+.......+.......+..+.+.|....   .+.++|++++..
T Consensus        93 ~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~  159 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE  159 (226)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             HHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence            9999999999998888777766666543333333455667788888887654   358999996543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.50  E-value=6.6e-14  Score=84.71  Aligned_cols=74  Identities=19%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+.+|+.+.|.|.+ .+ |.+.+.|+++|..+.....+.+.. ++....|.|.++..+|+|.|+|.|.|.    +.++.|
T Consensus        17 ~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~~~~~i~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l   89 (91)
T 2lvc_A           17 HAITSECVMLACEV-DR-EDAPVRWYKDGQEVEESDFVVLEN-EGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTV   89 (91)
T ss_dssp             ECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCCSSCEEEE-ETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEE
T ss_pred             EEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeeeeeeeEEe-cCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEE
Confidence            34689999999998 45 778899999999998776665543 344578999999999999999999663    444544


Q ss_pred             E
Q psy11132        196 Q  196 (243)
Q Consensus       196 ~  196 (243)
                      +
T Consensus        90 t   90 (91)
T 2lvc_A           90 T   90 (91)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.50  E-value=3.1e-13  Score=83.61  Aligned_cols=77  Identities=25%  Similarity=0.490  Sum_probs=62.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ . .|.+.+.|++++..+.....+.... ......|.|.++..+|+|.|+|.|    |....++.
T Consensus        18 ~~v~~G~~v~l~C~~-~-~p~~~v~W~k~g~~i~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~   90 (100)
T 2yuv_A           18 YQVDKGGRVRFVVEL-A-DPKLEVKWYKNGQEIRPSTKYIFEH-KGCQRILFINNCQMTDDSEYYVTA----GDEKCSTE   90 (100)
T ss_dssp             EEECTTEEEEEEEEE-S-CTTSCEEEEESSCBCCCBTTEEEEE-ETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEE
T ss_pred             cEEcCCCcEEEEEEe-c-CCCceEEEEECCEECCCCCCEEEEe-cCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEE
Confidence            356789999999999 4 5889999999999887765555442 334568999999999999999999    66777788


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        91 l~V~   94 (100)
T 2yuv_A           91 LFVR   94 (100)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8888

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.50  E-value=7.8e-14  Score=85.99  Aligned_cols=78  Identities=26%  Similarity=0.497  Sum_probs=62.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+..+.|.+.+.|++++.........      ...+.|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (98)
T 1gl4_B           20 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM------DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   93 (98)
T ss_dssp             EEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE------EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee------cCCCEEEEeCCChhhCEEEEEEecCCCCccccEEE
Confidence            356789999999999547899999999976544332211      11357999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        94 l~V~   97 (98)
T 1gl4_B           94 LHVQ   97 (98)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8775

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.50  E-value=1.8e-13  Score=96.53  Aligned_cols=118  Identities=18%  Similarity=0.222  Sum_probs=83.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+.   +.+.+.|+++  +....            ...++.... ......|.|.+++.+|+|.|.|
T Consensus        10 ~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L           10 ASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEEESCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCCEEEEEECCCChhHCEEEEE
Confidence            4567899999999983   8889999984  22111            111222222 3345789999999999999999


Q ss_pred             EEEccCc--ceeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc----cccceEEeCCee
Q psy11132        181 VASNTAA--QARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF----EQDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g--~~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~----~~~~W~~~~~~~  237 (243)
                      .|.|..+  .....+.|.|.... ..+|.+.+.+       ++.+.+.|....+    +.+.|++||..+
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  154 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLGQP-KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV  154 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECCSC-CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEecCCCceeECCCceEEEeCCC-CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence            9999887  34455677776322 2466665544       6778899987663    378999998765

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.50  E-value=1e-13  Score=97.05  Aligned_cols=119  Identities=13%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc-----ce
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-----QA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-----~~  189 (243)
                      ..+.+|++++|.|.+ . .+.+.+.|+|+|..+.................|.|.+++.+|+|.|+|.+.|...     ..
T Consensus        17 ~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~   94 (201)
T 1nkr_A           17 PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAP   94 (201)
T ss_dssp             SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCC
T ss_pred             CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCC
Confidence            456789999999998 4 3678999999987653211000001112357799999999999999999987532     22


Q ss_pred             eeeEEEEEEeecCCCCCeee------eeccceeeeccCccc-ccccceEEeCCee
Q psy11132        190 RYSSKLQVKGNLNRLPPSYT------LVFSQASYMSTSYYS-FEQDSWMIDNENY  237 (243)
Q Consensus       190 ~~~~~l~v~~~~~~~~p~~~------~~~~~~~~~~~~~~~-~~~~~W~~~~~~~  237 (243)
                      +..+.|.|.+..  .+|.+.      +..++.+.+.|.... .+.+.|+|+|+.+
T Consensus        95 s~~~~l~V~~~~--~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~  147 (201)
T 1nkr_A           95 SDPLDIVIIGLY--EKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAH  147 (201)
T ss_dssp             CCCEEEEEECSS--CCCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSS
T ss_pred             CCCEEEEeeccC--CCCceecCCCCccCCCCeEEEEEeCCCCCceEEEEECCccc
Confidence            445677776422  344443      445678888887643 2478999998764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.50  E-value=1.7e-13  Score=94.92  Aligned_cols=117  Identities=9%  Similarity=0.090  Sum_probs=80.9

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSS  193 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~  193 (243)
                      .+.+|++++|.|.+ .+ +++.+.|++++..+......  .........|.|.+++.+|+|.|+|.+.|..+..  +..+
T Consensus        14 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~   89 (188)
T 1oll_A           14 MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (188)
T ss_dssp             EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCS--SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccc--cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCce
Confidence            56789999999998 34 45799999999875421000  0012235789999999999999999999876533  4456


Q ss_pred             EEEEEeecCCCCCee------eeeccceeeeccCcccc-cccceEEeCCeeE
Q psy11132        194 KLQVKGNLNRLPPSY------TLVFSQASYMSTSYYSF-EQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~  238 (243)
                      .|.|.+..  .+|.+      .+..++.+.+.|..... +.+.|+|+|..+.
T Consensus        90 ~l~V~~~~--~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~  139 (188)
T 1oll_A           90 DLVVTEMY--DTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSH  139 (188)
T ss_dssp             EEEEESCS--CCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCE
T ss_pred             EEEecccC--CCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCcccc
Confidence            77776322  23433      34567788889976433 4799999997653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.49  E-value=5e-13  Score=94.52  Aligned_cols=119  Identities=22%  Similarity=0.279  Sum_probs=84.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe-eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+...... .........+.|.|.++..+|+|.|+|.|.|..|.....+
T Consensus        28 ~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  106 (215)
T 3mtr_A           28 VYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF  106 (215)
T ss_dssp             EEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence            456789999999999 58899999999999998765321 1222223467899999999999999999999999988888


Q ss_pred             EEEEEeecCCCCCeee-e-eccceeeeccCccc----cc----ccceEEeCCe
Q psy11132        194 KLQVKGNLNRLPPSYT-L-VFSQASYMSTSYYS----FE----QDSWMIDNEN  236 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~~-~-~~~~~~~~~~~~~~----~~----~~~W~~~~~~  236 (243)
                      .+.|...+  .+|... . .......+.|..-.    .+    .+.|.+++..
T Consensus       107 ~l~v~~~P--~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~  157 (215)
T 3mtr_A          107 ILVQADTP--SSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE  157 (215)
T ss_dssp             EEEECCCC--CCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC
T ss_pred             EEEECCCC--CCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCC
Confidence            88877433  333322 2 22345556654211    11    4778877764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8e-14  Score=87.88  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             CCCCCCCCCcEEEEEEeecCC---CCCEEEEEeCCE-ecCC--CCCeeEEe-ec----cceeEEEEeecCCCCCeeEEEE
Q psy11132        113 PFDGLPEGARTRVICGVTHGD---PPLTIRWLKDGK-PLSP--RFPVNVSD-LD----SFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~~~-~~~~--~~~~~~~~-~~----~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ....+.+|+.+.|.|.+. +.   |.|.+.|||+.. .+..  .....+.. ..    ...+.|.|.++..+|+|.|+|.
T Consensus        20 ~~v~V~eG~~v~L~C~v~-g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce   98 (118)
T 2edn_A           20 DSVSVETGKDAVVVAKVN-GKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE   98 (118)
T ss_dssp             CCCEEETTSCEECCEEEE-TTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred             CCeEEeCCCCEEEEEEEe-ccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence            335678999999999995 54   789999999752 2221  11222211 11    1257899999999999999999


Q ss_pred             EEccCcceeeeEEEEEE
Q psy11132        182 ASNTAAQARYSSKLQVK  198 (243)
Q Consensus       182 ~~n~~g~~~~~~~l~v~  198 (243)
                      |.|..|..+..+.|.|.
T Consensus        99 vsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           99 VKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             EECSSCEEEEEECCEEE
T ss_pred             EEEcCCcEEEEEEEEEE
Confidence            99999999999999998

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=3.1e-13  Score=84.85  Aligned_cols=83  Identities=18%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCC---CEEEEEeCCEecCC---CCCeeEEee-----ccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSP---RFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~---~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..+..|+++.|.|.+ .|.|.   +.+.|++++.....   .........     ......|.|.+++.+|+|.|.|.|.
T Consensus        14 ~~v~~G~~v~L~C~~-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (108)
T 3cx2_A           14 GEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVS   92 (108)
T ss_dssp             EEEETTCCEEEEEEE-ECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEE-CCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEe
Confidence            457899999999999 58887   99999998732111   111221111     1124689999999999999999999


Q ss_pred             ccCcceeeeEEEEEE
Q psy11132        184 NTAAQARYSSKLQVK  198 (243)
Q Consensus       184 n~~g~~~~~~~l~v~  198 (243)
                      |..|....++.|.|.
T Consensus        93 N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           93 TKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CSSCEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEe
Confidence            999999999998886

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.6e-13  Score=84.29  Aligned_cols=81  Identities=26%  Similarity=0.471  Sum_probs=63.9

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      ...+.+|+.+.|.|.+.  .|.+.+.|+|++..+....++.+.... ....|.|.+++.+|+|.|+|.+.+    ....+
T Consensus        20 ~~~v~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~   92 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA--QAQTEVTWYKDGKKLSSSSKVRVEAVG-CTRRLVVQQAGQAEAGEYSCEAGG----QQLSF   92 (102)
T ss_dssp             EEEEETTCCEEECCBCS--CSSSCCEEEETTEECCCCSSEEEEEET-TEEEEEETTCCTTTCSCEEEEETT----EECCE
T ss_pred             cEEEeCCCcEEEEEEec--CCCCceEEEECCEECCCCCCEEEEEcC-CEEEEEECCCCcccCEEEEEEcCC----CcEEE
Confidence            44788999999999984  677899999999998876666554322 246899999999999999999843    34557


Q ss_pred             EEEEEcCC
Q psy11132         98 RLIVNVPP  105 (243)
Q Consensus        98 ~l~v~~~p  105 (243)
                      .|.|..+|
T Consensus        93 ~l~V~~p~  100 (102)
T 2eo1_A           93 RLQVAGQC  100 (102)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeCCC
Confidence            78887654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=3.1e-13  Score=84.05  Aligned_cols=77  Identities=22%  Similarity=0.443  Sum_probs=62.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC--CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..+.+|+.+.|.|.+ .+ |.+.+.|++++..+....  .+... .+.....|.|.++..+|+|.|+|.|.|    ....
T Consensus        17 ~~v~~G~~v~l~C~~-~~-~~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~   89 (103)
T 1x44_A           17 TTAYCGERVELECEV-SE-DDANVKWFKNGEEIIPGPKSRYRIR-VEGKKHILIIEGATKADAAEYSVMTTG----GQSS   89 (103)
T ss_dssp             EEEETTEEEEEEEEC-SS-SSCCCEEEETTEECCCSTTCSEEEE-EETTEEEEEEEEECTTTCSEEEEEETT----EEEE
T ss_pred             EEEECCCCEEEEEEe-cC-CCCeEEEEECCEECCCCCceEEEEE-EcCCEEEEEECCCCcccCEEEEEEECC----CcEE
Confidence            567789999999999 56 668999999999987765  33433 233457899999999999999999988    4666


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      +.|.|.
T Consensus        90 ~~l~V~   95 (103)
T 1x44_A           90 AKLSVD   95 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777777

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.49  E-value=2.2e-13  Score=85.51  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=63.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE-ecC-------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLS-------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++. .+.       ...+............|.|.+++.+|+|.|.|.|.| .
T Consensus        16 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~   93 (108)
T 3m45_A           16 VTVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-M   93 (108)
T ss_dssp             EEEETTSCEEEEEEE-SSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-S
T ss_pred             eEEEeCCcEEEEeEE-cCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-C
Confidence            567789999999999 688889999998764 111       122333333333467899999999999999999999 8


Q ss_pred             cceeeeEEEEEE
Q psy11132        187 AQARYSSKLQVK  198 (243)
Q Consensus       187 g~~~~~~~l~v~  198 (243)
                      +.....+.|.|.
T Consensus        94 ~~~~~~~~L~V~  105 (108)
T 3m45_A           94 PVKTSKAYLTVL  105 (108)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            888888888888

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.49  E-value=1.1e-13  Score=97.28  Aligned_cols=118  Identities=17%  Similarity=0.247  Sum_probs=82.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec----------C--CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL----------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+          .  ...+....     ...|.|.+++.+|+|.|+|.+
T Consensus        14 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~L~i~~~~~~d~G~Y~C~~   87 (209)
T 1nbq_A           14 VRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-----PTGITFKSVTREDTGTYTCMV   87 (209)
T ss_dssp             CCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-----TTEEECSCCCTTSCSEEEEEE
T ss_pred             eEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-----ccEEEEeeCCHHHCcEEEEEE
Confidence            556789999999999 58899999999977542          1  11111111     267999999999999999999


Q ss_pred             EccCcc--eeeeEEEEEEeecC--CCCCeeeeeccceeeeccCc-ccc--cccceEEeCCeeE
Q psy11132        183 SNTAAQ--ARYSSKLQVKGNLN--RLPPSYTLVFSQASYMSTSY-YSF--EQDSWMIDNENYV  238 (243)
Q Consensus       183 ~n~~g~--~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~~~-~~~--~~~~W~~~~~~~~  238 (243)
                      .|..|.  ....+.|.|...+.  ..+....+..++.+.+.|.. ...  +.+.|+++|..+.
T Consensus        88 ~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~  150 (209)
T 1nbq_A           88 SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP  150 (209)
T ss_dssp             EETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred             ecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence            998663  34556666663221  11122345678888999985 444  4899999987653

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.48  E-value=3.2e-13  Score=95.33  Aligned_cols=119  Identities=19%  Similarity=0.258  Sum_probs=82.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ec----------CC--CCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PL----------SP--RFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++.  .+          ..  ..+..... ......|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   88 (213)
T 3d9a_L           11 LSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETEDFGMYFC   88 (213)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-CCCEEEEEECCCChhhCEEEEE
Confidence            456789999999999 688888999998532  11          10  12222222 3345689999999999999999


Q ss_pred             EEEccCccee-eeEEEEEEeecCCCCCeeeeec-------cceeeeccCccc-cc---ccceEEeCCee
Q psy11132        181 VASNTAAQAR-YSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYS-FE---QDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~-~~---~~~W~~~~~~~  237 (243)
                      .|.|..+... ....+.|...  ..+|.+.+.+       ++.+.+.|.... .|   .+.|+++|..+
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~--~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~  155 (213)
T 3d9a_L           89 QQSNSWPYTFGGGTKLEIKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  155 (213)
T ss_dssp             EECSSSSCEECCCEEEEECCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             eeecCCcceeCCCEEEEEecC--CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcC
Confidence            9999877543 3346666521  1366655432       568889998765 22   69999998764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.48  E-value=3.2e-13  Score=85.19  Aligned_cols=83  Identities=23%  Similarity=0.473  Sum_probs=61.9

Q ss_pred             CCCCCCCcEEEEEEeec-CCCCCEEEEEeCCEecCCCCCeeEEeecc-------ceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTH-GDPPLTIRWLKDGKPLSPRFPVNVSDLDS-------FSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+..|+.+.|.|.+.. +.+.+.+.|++++..+.............       ....|.|.++..+|+|.|+|.|.|..
T Consensus        20 ~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   99 (112)
T 3so5_A           20 QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHF   99 (112)
T ss_dssp             EEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCC
Confidence            45778999999999953 24468999999999887543211111111       14789999999999999999999999


Q ss_pred             cc-eeeeEEEEE
Q psy11132        187 AQ-ARYSSKLQV  197 (243)
Q Consensus       187 g~-~~~~~~l~v  197 (243)
                      |. .+..+.|.|
T Consensus       100 g~~~s~~~~l~V  111 (112)
T 3so5_A          100 GSSYSVXAXLTI  111 (112)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEeEEEEEe
Confidence            97 456677765

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=82.84  Aligned_cols=73  Identities=22%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..|... ..+
T Consensus        13 ~~v~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~   81 (91)
T 3bfo_A           13 QKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET----------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKV   81 (91)
T ss_dssp             EEECTTSCEEEECEE-ECSSCCEEEEEETTEECTTCC----------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCE
T ss_pred             cEecCCCcEEEEEEe-ccCCCCEEEEEcCCeeCCcCC----------CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeE
Confidence            346789999999998 589999999999999877543          35799999999999999999999999654 456


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .+.|.
T Consensus        82 ~l~V~   86 (91)
T 3bfo_A           82 EIIID   86 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66665

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.48  E-value=4.1e-14  Score=98.85  Aligned_cols=117  Identities=14%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC-c--ceee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-A--QARY  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g--~~~~  191 (243)
                      ..+.+|++++|.|.+ .+.|. .+.|++++..+......  .........|.|.++..+|+|.|+|.|.|.. |  ....
T Consensus        14 ~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~   89 (198)
T 1ugn_A           14 SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRI--PQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSD   89 (198)
T ss_dssp             SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTS--CHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCC
T ss_pred             CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccc--cccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCc
Confidence            356789999999998 46665 79999998866421100  0011224679999999999999999999987 5  3345


Q ss_pred             eEEEEEEeecCCCCCee------eeeccceeeeccCccc-ccccceEEeCCee
Q psy11132        192 SSKLQVKGNLNRLPPSY------TLVFSQASYMSTSYYS-FEQDSWMIDNENY  237 (243)
Q Consensus       192 ~~~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~  237 (243)
                      .+.|.|....  .+|.+      .+..++.+.+.|.... .+.+.|+++|..+
T Consensus        90 ~~~l~V~~~~--~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~  140 (198)
T 1ugn_A           90 PLELVVTGAY--IKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDE  140 (198)
T ss_dssp             CEEEEEECSS--CCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC----
T ss_pred             cEEEEEcccc--cCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCcc
Confidence            6777776421  23333      3456778888886654 3589999999765

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=84.18  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=64.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .+.| +.+.|++++..+.........     ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        13 ~~v~~G~~v~L~C~~-~g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   85 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLAESNRTRIT-----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFS   85 (99)
T ss_dssp             CCBCTTSCEEEECCC-CSSC-CEEEEEESSSBCCCCSSEEEC-----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEe-cCCC-CeEEEEECCEECCCCCcEEEE-----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            567899999999999 5766 699999999888665443332     368999999999999999999999998888888


Q ss_pred             EEEEe
Q psy11132        195 LQVKG  199 (243)
Q Consensus       195 l~v~~  199 (243)
                      |.|.+
T Consensus        86 l~V~~   90 (99)
T 2cr3_A           86 VNVSD   90 (99)
T ss_dssp             ECBCS
T ss_pred             EEEec
Confidence            87773

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.47  E-value=3.6e-13  Score=94.90  Aligned_cols=119  Identities=16%  Similarity=0.257  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Eec------------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPL------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++  ..+            ....+..... ......|.|.+++.+|+|.|.|
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   87 (210)
T 1lk3_L           10 LTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-SGTDFTLTIDPVEADDTAIYFC   87 (210)
T ss_dssp             EEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-cCCEEEEEECCCCHHHCeEEEE
Confidence            456789999999999 68888899999842  221            0112222222 3335689999999999999999


Q ss_pred             EEEccCccee-eeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        181 VASNTAAQAR-YSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .|.|..+... ....+.|...  ..+|.+.+.       .++.+.+.|....+ +   .+.|+++|..+
T Consensus        88 ~~~~~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~  154 (210)
T 1lk3_L           88 QQSWNGPLTFGAGTKLELKRA--DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTER  154 (210)
T ss_dssp             EECSSSSCEECCCEEEEECCC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             EEEcCCCceeCCCEEEEEcCC--CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccC
Confidence            9999876443 3346666522  135665543       25688999987653 2   69999998754

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.47  E-value=2.6e-14  Score=102.65  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCC-CCCCCcEEEEEEeecCC--C-CCEEEEEeCCEecCCCCCeeE
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGD--P-PLTIRWLKDGKPLSPRFPVNV  155 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--p-~~~~~W~~~~~~~~~~~~~~~  155 (243)
                      |.|.|.+.+..+.  .... .+..+|.+...++.... +..|+.+.|.|.+.+..  | .+.++|+++|..+........
T Consensus         1 ~~~~~~~~~~~~~--c~~~-~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAP-ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC--CCcc-ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            6788988875542  1111 11223444433333233 45699999999996444  4 458999999998754321111


Q ss_pred             -Eeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCccc
Q psy11132        156 -SDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYS  224 (243)
Q Consensus       156 -~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~  224 (243)
                       ...++   ..+.|.|.....+|.|.|+|.|.|..+.......+... .....+|.+.+.+       +..+.+.|....
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~-~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~g  156 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA-KGQPREPQVYTLPPSRDELTKNQVSLTCLVKG  156 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCC-CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEE
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCcccccccccc-CCCCCCCEEEEECCChHHhcCCceEEEEEEeE
Confidence             11111   12567777666778899999999987643222222210 1122566655432       457788998877


Q ss_pred             c-c---ccceEEeCCee
Q psy11132        225 F-E---QDSWMIDNENY  237 (243)
Q Consensus       225 ~-~---~~~W~~~~~~~  237 (243)
                      + |   .+.|++||+.+
T Consensus       157 f~P~~i~v~W~k~g~~~  173 (240)
T 4acp_A          157 FYPSDIAVEWESNGQPE  173 (240)
T ss_dssp             EBSSCCEEEEEETTEEC
T ss_pred             EeCCCcEEEEEECCEEC
Confidence            5 3   68999998764

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.47  E-value=1.5e-13  Score=94.40  Aligned_cols=114  Identities=12%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CCCCCcEEEEEEeec-CCCCCEEEEEe--CCEecC----------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        117 LPEGARTRVICGVTH-GDPPLTIRWLK--DGKPLS----------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~-~~p~~~~~W~~--~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ...|+++.|.|.... +.+.+.+.|++  ++..+.          ...+....    .++.|.|.+++.+|+|.|+|.|.
T Consensus        11 g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A           11 GALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----KNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----TTSCEEECSCCGGGCEEEEEEEE
T ss_pred             EecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----CCCCEEECCCChhhCEEEEEEEE
Confidence            467999999995421 34567999999  877652          12222221    23579999999999999999999


Q ss_pred             ccCccee--eeEEEEEEeecCCCCCeeeeeccceeeeccCcccc--cccceEEeCCee
Q psy11132        184 NTAAQAR--YSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       184 n~~g~~~--~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                      |..|...  ..+.|.|...  ..+|.+.... ..+.++|.....  +.+.|+++|+.+
T Consensus        87 n~~g~~~~~~~~~L~V~~~--~~~P~i~~~~-~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQER--VSKPKISWTC-INTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECC--CCCCEEEEET-TTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             eCCCceeEEEEEEEEEcCc--CCCCEEEEcc-CcEEEEeEccCCCCCEEEEEECCEEC
Confidence            9888754  4566666632  2456665543 256788876543  589999999865

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.47  E-value=1.9e-13  Score=95.94  Aligned_cols=106  Identities=16%  Similarity=0.255  Sum_probs=73.3

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      +..|+++.|.|.+    |.+.+.|+++|..+...        ......|.|.+++.+|+|.|+|.+.+.. +  ..+.+.
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~--------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~   79 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL--------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVY   79 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEE--------ESSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEE
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCC--------CCCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEE
Confidence            4689999999976    77899999999876532        1124679999999999999999976532 2  224444


Q ss_pred             EE---------------------------e-----ecCCCCCeeeeeccceeeeccCcccccccceEEeCCee
Q psy11132        197 VK---------------------------G-----NLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENY  237 (243)
Q Consensus       197 v~---------------------------~-----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  237 (243)
                      +.                           .     .....+|......++.+.+.|.....+.+.|+++|..+
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNI  152 (204)
T ss_dssp             EEC------------------------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEE
T ss_pred             EEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEEC
Confidence            33                           0     00011222222378889999996666789999998765

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.47  E-value=3.4e-14  Score=102.75  Aligned_cols=115  Identities=18%  Similarity=0.302  Sum_probs=78.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCE-----EEEEeCCEecCCC-----------------CCeeEEeeccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLT-----IRWLKDGKPLSPR-----------------FPVNVSDLDSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~-----~~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~i~~~~~  172 (243)
                      ..+..|+++.|.|.+. +.|.+.     +.|++++......                 ..............|.|.+++.
T Consensus        13 ~~v~~G~~v~L~C~~~-g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   91 (248)
T 3pv7_A           13 QITPLNDNVTIFCNIF-YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL   91 (248)
T ss_dssp             EEEETTSCEEECCEEE-ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred             eEEeCCCCEEEeeEEe-cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence            3467899999999994 666554     9999864332110                 0000000111235699999999


Q ss_pred             CCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee------ccceeeeccCccc-c--c-ccceEEeCC
Q psy11132        173 AHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV------FSQASYMSTSYYS-F--E-QDSWMIDNE  235 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~------~~~~~~~~~~~~~-~--~-~~~W~~~~~  235 (243)
                      +|+|.|+|.+.+..+.....+.|.|.     .+|.+.+.      .+..+.+.|.... .  + .+.|+++|+
T Consensus        92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~-----~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           92 EEAGEYRCEVVVTPLKAQGTVQLEVV-----ASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE-----BCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             HHCeEEEEEEEeCCccceeEEEEEEe-----cCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            99999999999998887788888888     56665543      3456668998766 3  3 899999996

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.47  E-value=2.2e-13  Score=92.65  Aligned_cols=110  Identities=14%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+. +.| .+.+.|++++..+....           ..+.+.+++.+|+|.|+|.+.|..+.  ..+
T Consensus        14 ~~v~~G~~v~l~C~~~-~~p~~~~~~W~~~g~~~~~~~-----------~~~~~~~~~~~d~G~Y~C~~~~~~~s--~~~   79 (170)
T 3ry4_A           14 INVLQEDSVTLTCQGA-RSPESDSIQWFHNGNLIPTHT-----------QPSYRFKANNNDSGEYTCQTGQTSLS--DPV   79 (170)
T ss_dssp             SEEETTCEEEEEEESC-CCSSSSCEEEEETTEECTTCC-----------SSEEEEECCGGGCEEEEEEETTSBCC--CCE
T ss_pred             eEEECCCcEEEEEEec-CCCCcceEEEEECCeEcccCc-----------cceEEEecccccCeEEEEEEeCCCce--EeE
Confidence            3467899999999994 655 67999999999887542           33556789999999999999975443  345


Q ss_pred             EEEEEeec-CCCCCeeeeeccceeeeccCccc---ccccceEEeCCeeE
Q psy11132        194 KLQVKGNL-NRLPPSYTLVFSQASYMSTSYYS---FEQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~-~~~~p~~~~~~~~~~~~~~~~~~---~~~~~W~~~~~~~~  238 (243)
                      .+.|...+ ...+|...+..++.+.+.|....   .+.+.|+++|..+.
T Consensus        80 ~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (170)
T 3ry4_A           80 HLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK  128 (170)
T ss_dssp             EEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred             EEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence            66666211 11233445567788889997732   25899999987654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.46  E-value=6.5e-13  Score=93.71  Aligned_cols=119  Identities=16%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ec------------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PL------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++.+.  ..            ....++... .......|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C   88 (213)
T 3r06_A           11 LPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS-GSGRDSSFTISSLESEDIGSYYC   88 (213)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe-ccCCEEEEEECCCCcccCEEEEE
Confidence            456789999999999 577889999998321  00            011222222 23345689999999999999999


Q ss_pred             EEEccCcc-eeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        181 VASNTAAQ-ARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g~-~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .|.|..+. ......+.|..  ...+|.+.+.       .++.+.+.|..... +   .+.|+++|..+
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l  155 (213)
T 3r06_A           89 QQYYNYPWTFGPGTKLEIKR--ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK  155 (213)
T ss_dssp             EECSSSSCEECCCEEEEECC--CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             ecccCCceEEcCCceEEEec--cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence            99987653 33445666631  2256666553       24568899987653 3   79999998765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.46  E-value=1.3e-12  Score=90.00  Aligned_cols=99  Identities=23%  Similarity=0.350  Sum_probs=77.7

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEE---CCee-ecCC--CceEEEEeeeeceEEEEeec
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLK---DGRY-LDNS--AALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~---~~~~-~~~~--~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +.|.|..+|.+...+....+.+|+.+.|.|.+. +.| .+.+.|++   ++.. +...  .++.+... .....|.|.++
T Consensus        76 ~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v  153 (184)
T 3b5h_A           76 ANIQLHGPPRVKAVKSSEHINEGETAMLVCKSE-SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-QGRSELHIENL  153 (184)
T ss_dssp             EEEEECCSCCCEESCSEEEECTTSCEEEEEECC-CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-TTEEEEEECSC
T ss_pred             EEEEEecCCceeecCCCcEEcCCCcEEEEEEEC-CCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec-CCeeEEEEeec
Confidence            467888999988887777899999999999995 777 78999999   4543 3322  34444322 23468999999


Q ss_pred             C-CCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         75 S-ARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        75 ~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      + .+|.|.|+|.+.|..|.....+.|.|.
T Consensus       154 ~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          154 NMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            9 899999999999999988877888775

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.46  E-value=3.4e-13  Score=88.45  Aligned_cols=87  Identities=18%  Similarity=0.313  Sum_probs=66.4

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC----------CceEEEE--eeeeceEEEEee
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS----------AALSITH--VDQYNSMLVIDS   73 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----------~~~~~~~--~~~~~~~l~i~~   73 (243)
                      ...||.+...+....+.+|+++.|.|.+. +.|.+.+.|++++..+...          .+.....  .......|.|.+
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~-g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   96 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDT   96 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEE-CSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEe-eecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECC
Confidence            34688998888899999999999999995 7888899999987655321          2222221  112357899999


Q ss_pred             cCCCCCeeEEEEEEeCCCcc
Q psy11132         74 VSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      ++.+|+|.|+|.+.|..|..
T Consensus        97 v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           97 LVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CCGGGCEEEEEEEECCTTSS
T ss_pred             CCcccCEEEEEEEEecCCcc
Confidence            99999999999999988864

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.46  E-value=4.1e-14  Score=90.26  Aligned_cols=96  Identities=24%  Similarity=0.406  Sum_probs=68.8

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc---eEEEEeeeeceEEEEe-----ecCCC
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA---LSITHVDQYNSMLVID-----SVSAR   77 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~-----~~~~~   77 (243)
                      +..||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....   .......  +..+.+.     +++.+
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~v~~~   82 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLP--SGSLFFLRIVHGRKSRP   82 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEE-EESCCEEEEEETTEECCCTTTCSSCSEEECT--TSCEEESSCCCBTTBCS
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECC-ccCCCeEEEEECCEeccccCCCCcceeEEec--CCcEEEEEEEeCCCCcC
Confidence            34678888888888899999999999995 788889999999988765321   1111111  2223333     55799


Q ss_pred             CCeeEEEEEEeCCCcc-eeEEEEEEEcC
Q psy11132         78 HSGNYSCTVRNMVAED-TQVQRLIVNVP  104 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~-~~~~~l~v~~~  104 (243)
                      |+|.|+|.+.|..|.. +..+.|.+..+
T Consensus        83 D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           83 DEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             cCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            9999999999999874 55667776654

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.46  E-value=4.8e-14  Score=100.05  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             CCCCCcEEEEEEeecCC---C-CCEEEEEeCCEecCCCCCeeEEeec----cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGD---P-PLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~---p-~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +.+|+++.|.|.+. +.   | .+.+.|++++..+............    ...+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus        23 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEE-EECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEc-CCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            57899999999996 54   4 3799999999876543211111110    12357999999999999999999998765


Q ss_pred             eeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        189 ARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       189 ~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      ......+.. ......+|.+.+.+       ++.+.+.|...++ |   .++|++||+.+
T Consensus       102 ~~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~  160 (218)
T 2rgs_A          102 SPIERTISK-IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTE  160 (218)
T ss_dssp             SCEEEEECC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CcceEEEee-cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEec
Confidence            411112211 00112566655432       5678899988774 3   79999999764

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.8e-13  Score=84.28  Aligned_cols=77  Identities=23%  Similarity=0.444  Sum_probs=62.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+ |.+.+.|++++..+.....+.... ++....|.|.++..+|+|.|+|.|.|    ....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~~-~~~~v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~   90 (103)
T 2edf_A           18 QWVAPGEDVELRCEL-SR-AGTPVHWLKDRKAIRKSQKYDVVC-EGTMAMLVIRGASLKDAGEYTCEVEA----SKSTAS   90 (103)
T ss_dssp             EEECTTSCEEECCEE-SS-SSCCCCEEESSCBCCCSSSEEEEE-ETTEEEEEESSCCTTTCSEEEEECSS----CEEEEE
T ss_pred             cEEcCCCCEEEEEEE-eC-CCCcEEEEECCEEccCCCCEEEEE-CCCEEEEEECCCCcccCEEEEEEEcc----CCcEEE
Confidence            567899999999999 46 778999999999987766554443 33367899999999999999999999    356677


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        91 l~V~   94 (103)
T 2edf_A           91 LHVE   94 (103)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7777

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.45  E-value=4.6e-13  Score=94.82  Aligned_cols=121  Identities=18%  Similarity=0.313  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEEEEEeecCC-CCCEEEEEeCC--Eec--------------CC--CCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGD-PPLTIRWLKDG--KPL--------------SP--RFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~--~~~--------------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|+++.|.|.+ .+. |.+.+.|++..  ...              ..  ..+..... ......|.|.+++.+|+
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B           10 ASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-ETTEEEEEESSCCGGGC
T ss_pred             EEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-CCceEEEEEccCCcccC
Confidence            456789999999999 577 88999999832  100              00  01122211 33456799999999999


Q ss_pred             eeEEEEEEccCc-----ceeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc---c-ccceEEeCCeeE
Q psy11132        176 GEYTCVASNTAA-----QARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF---E-QDSWMIDNENYV  238 (243)
Q Consensus       176 g~y~C~~~n~~g-----~~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~---~-~~~W~~~~~~~~  238 (243)
                      |.|.|.|.|..|     .....+.|.|...+. .+|.+.+.       .++.+.+.|.....   + .+.|+++|..+.
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  165 (218)
T 3s96_B           88 AIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK-STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPIT  165 (218)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCC-BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-
T ss_pred             EEEEEEEecCCCCceeEEEcCcEEEEEecCCC-CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECc
Confidence            999999999876     334456777764322 45555542       24578889987662   3 799999987653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.45  E-value=6.6e-14  Score=98.51  Aligned_cols=119  Identities=13%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEEEeecCCC----CCEEEEEeCCEecCCCCCeeE-Eeec---cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGDP----PLTIRWLKDGKPLSPRFPVNV-SDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~-~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +..|+++.|.|.+. |.+    ...+.|++++..+........ ....   ...+.|.|.+++.+|+|.|.|.|.|..+.
T Consensus        15 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEE-EECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEe-CcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            57899999999995 553    359999999977653211000 0000   11357999999999999999999998875


Q ss_pred             eeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        189 ARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       189 ~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      ......+.+. .....+|.+.+.+       ++.+.+.|....+ |   .+.|++||+.+
T Consensus        94 ~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l  152 (207)
T 2vol_A           94 APIEKTISKT-KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPA  152 (207)
T ss_dssp             SCEEEEECCC-CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CceEEEeccC-CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEec
Confidence            4222222210 0112566665432       5678899988764 2   79999998754

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.45  E-value=5.8e-13  Score=81.53  Aligned_cols=76  Identities=24%  Similarity=0.408  Sum_probs=63.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+  .+.+.|++++..+.........     ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        11 ~~v~~G~~~~l~C~~-~~--~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   82 (95)
T 4hwu_A           11 YVVAPGESLELQCML-KD--AAVISWTKDGVHLGPNNRTVLI-----GEYLQIKGATPRDSGLYACTAARTVDSETWIFM   82 (95)
T ss_dssp             EEECTTSCEEEECCC-CT--TCEEEEEETTEEECCCSSEEEE-----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEECCCCEEEEEEEe-CC--CCEEEEEECCEECCCCceEEEe-----CCEEEECcCCcccCEEEEEEEccCCCcEEEEEE
Confidence            446789999999998 45  5799999999998766544332     357999999999999999999999998888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      +.|.
T Consensus        83 l~V~   86 (95)
T 4hwu_A           83 VNVT   86 (95)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8887

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.45  E-value=6.9e-13  Score=95.76  Aligned_cols=122  Identities=17%  Similarity=0.257  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe----------------CCEecCCC---CCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK----------------DGKPLSPR---FPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|+++.|.|.+ .+.+.+.+.|++                ++......   .+............|.|.+++.+|+
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           11 VISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            346789999999999 578889999998                22222211   2222222223456899999999999


Q ss_pred             eeEEEEEEccCc----ceeeeEEEEEEeec-CCCCCeeeee--------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        176 GEYTCVASNTAA----QARYSSKLQVKGNL-NRLPPSYTLV--------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       176 g~y~C~~~n~~g----~~~~~~~l~v~~~~-~~~~p~~~~~--------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      |.|.|.+.+..+    .......+.|.... ...+|.+.+.        .++.+.+.|..... +   .+.|++||..+
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  168 (246)
T 4dzb_B           90 SFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  168 (246)
T ss_dssp             EEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEEC
Confidence            999999998654    22244566666321 1235554432        26788899987653 2   79999998765

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.9e-13  Score=84.29  Aligned_cols=78  Identities=14%  Similarity=0.230  Sum_probs=62.5

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .+.| ++.+.|+++|..+....++.... ++....|.|.+++.+|+|.|+|.|.|    ...++
T Consensus        18 ~~v~~G~~v~l~C~v-~~~~~~~~v~W~k~g~~i~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a   91 (104)
T 2eny_A           18 MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVGSSSRFQATR-QGRKYILVVREAAPSDAGEVVFSVRG----LTSKA   91 (104)
T ss_dssp             EEEESSCCEEEEEEC-SSCCCSSCBCCBSSSSBCSBCSSCEEEE-ETTEEEEEECSCCTTTCSCEEEEETT----EEEEE
T ss_pred             cEEcCCCcEEEEEEE-cCCCCCceeEEEECCEECCCCCCEEEEE-cCCEEEEEECCCCHHHCEEEEEEECC----eeEEE
Confidence            567899999999999 5666 45899999999988766554432 33457899999999999999999855    56778


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        92 ~L~V~   96 (104)
T 2eny_A           92 SLIVR   96 (104)
T ss_dssp             CEEEE
T ss_pred             EEEEe
Confidence            88888

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.45  E-value=3.7e-13  Score=84.20  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=62.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+.|.+ +.|++++..+.......... +.....|.|.++..+|+|.|+|.|.|.  .....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~~~~~~-v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~   92 (106)
T 2dlt_A           18 LTVKAAEQAVFKCEV-SDEKVT-GKWYKNGVEVRPSKRITISH-VGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAK   92 (106)
T ss_dssp             EEEESSCCEECCCEE-SCSSCE-EEEEESSCBCCCCSSCEEEE-ETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBC
T ss_pred             eEEeCCCeEEEEEEE-cCCCcc-eEEEcCCEECcCCCCEEEEE-eCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEE
Confidence            557789999999999 577766 99999999987766554432 334578999999999999999999998  4445556


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        93 l~V~   96 (106)
T 2dlt_A           93 LNFL   96 (106)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.44  E-value=1.6e-13  Score=95.97  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             CCCCCCcEEEEEEeec---CCCCCEEEEEeCCEecCCC------------CCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        116 GLPEGARTRVICGVTH---GDPPLTIRWLKDGKPLSPR------------FPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~---~~p~~~~~W~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      .+..|+++.|.|.+..   +.|.+.+.|++++..+...            .+...  .......|.|.+++.+|+|.|.|
T Consensus         5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~--~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF--DITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE--ESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE--ccCCCcEEEEecccchhCeEEEE
Confidence            4568999999998842   2356799999998865210            00111  11224679999999999999999


Q ss_pred             EEEccCccee-----eeEEEEEEeecCCCCCeeeee---ccceeeeccCcc-cc--cccceEEeCCeeE
Q psy11132        181 VASNTAAQAR-----YSSKLQVKGNLNRLPPSYTLV---FSQASYMSTSYY-SF--EQDSWMIDNENYV  238 (243)
Q Consensus       181 ~~~n~~g~~~-----~~~~l~v~~~~~~~~p~~~~~---~~~~~~~~~~~~-~~--~~~~W~~~~~~~~  238 (243)
                      .|.|..|...     ..+.|.|....  .+|.+...   .++.+.+.|... ..  +.++|+++|+.+.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~--~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADF--PTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCC--CCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCC--CCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            9999876542     45666666322  34555442   355778999874 44  4899999987653

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5e-13  Score=83.27  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+.+|+.+.|.|.+ .+.|.+ +.|++++..+.......... ......|.|.+++.+|+|.|+|.|.|..    ..+.|
T Consensus        21 ~v~~G~~v~l~C~~-~~~p~~-v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----~~~~l   93 (104)
T 2e6p_A           21 TFTTSERVVLTCEL-SRVDFP-ATWYKDGQKVEESELLVVKM-DGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGV   93 (104)
T ss_dssp             EEESSSCEECCEEC-SSTTCC-CEEEETTEECCCBTTBEEEE-ETTEEEEEESSCCTTTCEEEEEECSSCC----CCEEE
T ss_pred             EEeCCCcEEEEEEe-cCCCCc-cEEeeCCEECCCCCCEEEEe-CCCEEEEEECCCChhhCEEEEEEECCce----EEEEE
Confidence            56789999999999 688877 99999999988665554432 3345789999999999999999999863    36677


Q ss_pred             EEE
Q psy11132        196 QVK  198 (243)
Q Consensus       196 ~v~  198 (243)
                      .|.
T Consensus        94 ~V~   96 (104)
T 2e6p_A           94 TVQ   96 (104)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            777

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.44  E-value=1.5e-13  Score=96.94  Aligned_cols=98  Identities=26%  Similarity=0.426  Sum_probs=75.2

Q ss_pred             eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe--eecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR--YLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      +.|.|..+|.+........+.+|+.+.|.|.+..+.|.+.+.|++++.  .+......     ......|.|.+++.+|+
T Consensus       114 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~  188 (214)
T 3jz7_A          114 FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-----EMTSPVISVKNASSEYS  188 (214)
T ss_dssp             EEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG-----GTTSSEEEECSCCGGGC
T ss_pred             EEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee-----ccCCCEEEEecCCHHHC
Confidence            467888888876655555688999999999985588889999999543  33322111     11145899999999999


Q ss_pred             eeEEEEEEeCCCcceeEEEEEEEcC
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v~~~  104 (243)
                      |.|+|.|.|..+.....+.|.|..|
T Consensus       189 G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          189 GTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             EEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             EEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            9999999999998888888887644

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.44  E-value=3.8e-12  Score=105.87  Aligned_cols=179  Identities=16%  Similarity=0.203  Sum_probs=118.2

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeE-EE--ECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIK-WL--KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+. .+.+..+.+|+++.|.|.+. +.|.+.+. |+  ++|..+....... .......+.|.|.+++..|.|.|+|
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~-g~P~p~i~~W~~~~~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKV-TSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEE-SCCCTTCEEEEEESSSCCEEEEEEEE-CCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeC-CCCCCceeEEEecCCCccccccceEE-eccccceEEEEEcccccccCeEEEE
Confidence            467666 45578899999999999995 88888887 88  6776664322111 1111224789999999999999999


Q ss_pred             EEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeec--C-CCCC--EEEEEeCCEecCCCCCeeEEee
Q psy11132         85 TVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH--G-DPPL--TIRWLKDGKPLSPRFPVNVSDL  158 (243)
Q Consensus        85 ~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--~-~p~~--~~~W~~~~~~~~~~~~~~~~~~  158 (243)
                      .|.|..|. .+....|.|..+|.++..+..  .......+.|.|....  | .+..  .+.|...+..      .... .
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~--~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~------~~~~-~  311 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPIAPPQL--ASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS------WNDR-Q  311 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBSSCCEE--EEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS------CEEE-E
T ss_pred             EEECCCCCcceeeEEEEEecCCCCCCCcce--eccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC------ceEE-e
Confidence            99999987 677788888887765432211  1123567888886521  2 1222  4556554211      1111 1


Q ss_pred             ccceeEEEEeecCCCCCeeEEEEEE--ccCcceeeeEEEEEE
Q psy11132        159 DSFSSLLSINSVSAAHSGEYTCVAS--NTAAQARYSSKLQVK  198 (243)
Q Consensus       159 ~~~~~~l~i~~~~~~d~g~y~C~~~--n~~g~~~~~~~l~v~  198 (243)
                      ......+.|.++...+...|.|.|.  |..|....+..+.+.
T Consensus       312 ~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~  353 (731)
T 2v5y_A          312 PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR  353 (731)
T ss_dssp             ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE
T ss_pred             ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee
Confidence            1223668899999888889999999  998876544434443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=96.76  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             CCCCCCCcEEEEEE-eecCCCC-CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee-
Q psy11132        115 DGLPEGARTRVICG-VTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~-~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-  191 (243)
                      ..+.+|+.+.|.|. + .+.|. +.+.|++++..+......... .......|.|.++..+|+|.|+|.+.|..+.... 
T Consensus        18 ~~v~~G~~v~L~C~~~-~~~p~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   95 (201)
T 3s97_C           18 VRVKEGKGMVLLCDPP-YHFPDDLSYRWLLNEFPVFITMDKRRF-VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF   95 (201)
T ss_dssp             EEEETTCCEEECCCCC-SEESSCCEEEEEESSTTCBCCCSSSEE-ECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             EEEECCCCEEEecccc-ccCCCceEEEEEECCceeeeeeCCCeE-EEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence            55788999999999 6 67888 999999998776422111111 1122466999999999999999999997765443 


Q ss_pred             --eEEEEEEee--cCCCCC-------eeeeeccceeeeccCcccc--cccceEEeCCee
Q psy11132        192 --SSKLQVKGN--LNRLPP-------SYTLVFSQASYMSTSYYSF--EQDSWMIDNENY  237 (243)
Q Consensus       192 --~~~l~v~~~--~~~~~p-------~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~  237 (243)
                        .+.+.+...  ....+|       ...+..+..+.+.|.....  +.+.|++++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~  154 (201)
T 3s97_C           96 SKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM  154 (201)
T ss_dssp             CCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCC
T ss_pred             hcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcC
Confidence              233333211  011122       3445567778888976554  489999998644

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.42  E-value=2.1e-13  Score=92.89  Aligned_cols=115  Identities=14%  Similarity=0.058  Sum_probs=79.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--ee-------EEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VN-------VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .+..|++++|.|.+ .+ |.+.+.|++++..+.....  ..       .......+..|.|.+++.+|+|.|.|.|.|..
T Consensus         6 ~~~~G~~VtL~c~~-~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            6 YGVVYGNVTFHVPS-NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EEETTCCEEECCCC-SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEcCCCEEEcCCC-CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence            35689999999988 34 8889999998874321100  00       01111234679999999999999999999987


Q ss_pred             cceeeeEEEEEEeecCCCCCeeeeeccceeeeccCccc--ccccceEEeCCee
Q psy11132        187 AQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYS--FEQDSWMIDNENY  237 (243)
Q Consensus       187 g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~W~~~~~~~  237 (243)
                      |  ...+.|.|...+  ..|.+...... ..+.|....  -+.+.|+++|+.+
T Consensus        84 ~--~~~~~L~V~~~~--~~p~i~~~~~~-~~L~C~~~~~p~p~i~W~~~~~~l  131 (171)
T 1ccz_A           84 D--TMKFFLYVLEMV--SKPMIYWECSN-ATLTCEVLEGTDVELKLYQGKEHL  131 (171)
T ss_dssp             S--CEEEEEEEECCC--CCCEEEEETTT-TEEEEECSSCSSCEEEEEETTEEE
T ss_pred             C--cEEEEEEEECcC--CCCEEEEecCC-cEEEEEeCCCCCcEEEEEECCEEC
Confidence            7  566777776332  34555544433 367887654  3589999998765

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.42  E-value=8.9e-13  Score=94.40  Aligned_cols=120  Identities=18%  Similarity=0.251  Sum_probs=78.9

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CC-EEEEEeCCE--ec----------C--CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PL-TIRWLKDGK--PL----------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~-~~~W~~~~~--~~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|+++.|.|.+. +.+ .+ .+.|++++.  .+          .  ...++.... ......|.|.+++.+|+|.|
T Consensus        29 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y  106 (234)
T 2j6e_L           29 ASGTPGQRVTISCSGS-SSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-SGTSASLAISGLRSEDEADY  106 (234)
T ss_dssp             CCBCTTCEEEEEEECC-TTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-ETTEEEEEEESCCSTTCSEE
T ss_pred             EEeeCCCcEEEEEEec-CCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-cCCeEEEEECCCCHHHCEEE
Confidence            5678999999999984 543 34 799998632  11          0  011222221 23456899999999999999


Q ss_pred             EEEEEccCcc---eeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        179 TCVASNTAAQ---ARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       179 ~C~~~n~~g~---~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .|.|.|..+.   ....+.+.|...+ ..+|.+.+.       .++.+.+.|..... |   .++|++||..+
T Consensus       107 ~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  178 (234)
T 2j6e_L          107 YCATWDDSLSAVIFGGGTKLTVLGQP-KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV  178 (234)
T ss_dssp             EEEEEETTTTEEEECCCBCCCBCCCC-CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred             EEEEEcCCcceeEecCCEEEEEecCC-CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence            9999998772   2234455553221 145554432       25678899988654 2   79999998764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.41  E-value=1.1e-12  Score=92.72  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=70.4

Q ss_pred             eEEEec--CCCccCCCC-CcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCc-eEEEEe------eeeceEEEE
Q psy11132          3 VIFSTV--PPKLSPTNP-ERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAA-LSITHV------DQYNSMLVI   71 (243)
Q Consensus         3 ~l~v~~--~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~------~~~~~~l~i   71 (243)
                      .|.+..  +|.+...+. ...+.+|++++|.|.+.+. .+.+.+.|++++..+..... ......      ....+.|.|
T Consensus        96 ~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I  175 (213)
T 2x1w_L           96 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI  175 (213)
T ss_dssp             EEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEE
T ss_pred             EEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEE
Confidence            444433  344444333 3478999999999999632 23458999999876432211 000000      122467999


Q ss_pred             eecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCc
Q psy11132         72 DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      .+++.+|+|.|+|.+.|..|..+..+.|.|.++|.+
T Consensus       176 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             CCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            999999999999999999999889999999887754

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.41  E-value=2.4e-12  Score=92.22  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--e-----------c-CCCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--P-----------L-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~-----------~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+ .+.+.+.+.|++.+.  .           . ....++... .......|.|.+++.+|+|.|.|
T Consensus        34 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C  111 (237)
T 3sob_L           34 LSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGTDFTLTISSLQPEDFATYYC  111 (237)
T ss_dssp             EEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-cCCCEEEEEECCCChhhCeEEEE
Confidence            456789999999999 577889999998421  1           0 111222222 23346789999999999999999


Q ss_pred             EEEccCcce-eeeEEEEEEeecCCCCCeeeee-------ccceeeeccCccc-c---cccceEEeCCeeE
Q psy11132        181 VASNTAAQA-RYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYS-F---EQDSWMIDNENYV  238 (243)
Q Consensus       181 ~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~-~---~~~~W~~~~~~~~  238 (243)
                      .+.|..+.. .....+.|..  ...+|.+.+.       .++.+.+.|.... .   +.+.|+++|..+.
T Consensus       112 ~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~  179 (237)
T 3sob_L          112 QQSYTTPPTFGQGTKVEIKR--TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  179 (237)
T ss_dssp             EECSSSSCEECCCEEEEEEC--CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             eeccCCceEEcCcEEEEEec--CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCC
Confidence            999877532 3445666653  2356666543       2567889998765 2   4899999987653

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.41  E-value=2e-12  Score=91.18  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeCC--Eec------------CCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKDG--KPL------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|+++.|.|.+ .+.|   .+.+.|++++  ..+            ....++.... ......|.|.+++.+|+|.
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~   87 (212)
T 1q0x_L           10 LTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-IGDKAALTITGAQTEDEAI   87 (212)
T ss_dssp             EEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             EeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-eCCEEEEEECCCCccCCEE
Confidence            456789999999999 5666   4789999853  221            1112222221 2335689999999999999


Q ss_pred             EEEEEEccCcce-eeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        178 YTCVASNTAAQA-RYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       178 y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      |.|.|.|..+.. .....+.|.... ..+|.+.+.       .++.+.+.|....+ +   .+.|+++|..+
T Consensus        88 Y~C~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  158 (212)
T 1q0x_L           88 YFCALWSNNKLVFGGGTKLTVLGQP-KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPV  158 (212)
T ss_dssp             EEEEEECSSCEEECCCEEEEECCSC-CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEEEEecCchhhcCCCeEEEEecCC-CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeC
Confidence            999999987643 234556664221 146666553       35688899987664 2   79999998654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.41  E-value=1.6e-12  Score=91.95  Aligned_cols=120  Identities=16%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCE--ecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGK--PLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|+++.|.|.+..+.+ .+.+.|++++.  .+.            ...+..... ......|.|.+++.+|+|.|.
T Consensus        10 ~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~   88 (216)
T 2xzc_L           10 VSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-SGTSATLGITGLQTGDEADYY   88 (216)
T ss_dssp             EEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEE
T ss_pred             EEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-cCCEEEEEECCCCcccCEEEE
Confidence            45678999999999534443 57999998532  110            011222221 333568999999999999999


Q ss_pred             EEEEccCc--ceeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        180 CVASNTAA--QARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       180 C~~~n~~g--~~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      |.|.|..+  .......+.|..  ...+|.+.+.+       ++.+.+.|....+ |   .+.|+++|..+
T Consensus        89 C~~~~~~~~~~~~~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  157 (216)
T 2xzc_L           89 CGTWDSSLNPVFGGGTKLEIKR--TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ  157 (216)
T ss_dssp             EEEECTTSCEEEBCCEEEEECC--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             EEEEeCCCcceECCCEEEEEcC--CCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeec
Confidence            99999876  223345566642  22466665532       5688999987663 2   69999998754

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.41  E-value=9.2e-12  Score=100.11  Aligned_cols=166  Identities=13%  Similarity=0.205  Sum_probs=102.5

Q ss_pred             cccCCeEEEEEEeeCCCCC---ceeEEEECCeeecCCCc-eEEEE---eeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         21 LNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAA-LSITH---VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~-~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      +..+..+.|.|.+.+..+.   +.|+|++++..+..... .....   .-...+.|.|......|.+.|+|.+.+.....
T Consensus       355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~  434 (551)
T 1ntl_A          355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  434 (551)
T ss_pred             eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence            5578889999999765554   68999999876542111 00000   01123568888777778899999999876632


Q ss_pred             --eeEEEEEE--EcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEE-eeccc---eeE
Q psy11132         94 --TQVQRLIV--NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVS-DLDSF---SSL  164 (243)
Q Consensus        94 --~~~~~l~v--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~-~~~~~---~~~  164 (243)
                        ...+.+.+  ..+|.+...... .....|+.+.|.|.+.+.+|+ ..++|+++|..+......... ..++.   .+.
T Consensus       435 ~~~~~~~~~~~~~~~P~V~~~~~~-~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~  513 (551)
T 1ntl_A          435 PIEKTISKTKGRPKAPQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSK  513 (551)
T ss_pred             CeEEEEecCCCCCcCCceEEeCCC-hhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccceeCCCCCEEEEEE
Confidence              22333332  345555443322 234568999999999655664 699999999987532111111 11111   233


Q ss_pred             EEEeecCCCCCeeEEEEEEccCc
Q psy11132        165 LSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       165 l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      |.+.....++.+.|+|.|.+...
T Consensus       514 l~v~~~~~~~~~~ytC~V~h~~l  536 (551)
T 1ntl_A          514 LNVQKSNWEAGNTFTCSVLHEGL  536 (551)
T ss_pred             EEEcHHHcCCCCeEEEEEEECCC
Confidence            55554444567899999998754

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9.9e-14  Score=86.01  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC----CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ..+.+|+.+.|.|.+ .+.| +.+.|++++..+....    .+... .++....|.|.++..+|+|.|+|.|.|    ..
T Consensus        18 ~~v~~G~~v~l~C~~-~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~   90 (101)
T 2edk_A           18 QQVFVGDRVEMAVEV-SEEG-AQVMWMKNGVELTREDSFKARYRFK-KDGKRHILIFSDVVQEDRGRYQVITNG----GQ   90 (101)
T ss_dssp             EEEESSCCCBCCEEE-SCSS-CCCEEEESSCBCCCSCCSSCCCEEE-ECSSEEEEECSSCCGGGCSBEEEECSS----CE
T ss_pred             eEEcCCCCEEEEEEE-eCCC-CEEEEEECCEECCCCCCcceeEEEE-ECCCEEEEEECCCChhhCEEEEEEEcC----Cc
Confidence            557789999999999 5777 8999999999887654    22333 334457899999999999999999987    34


Q ss_pred             eeEEEEEE
Q psy11132        191 YSSKLQVK  198 (243)
Q Consensus       191 ~~~~l~v~  198 (243)
                      ..+.|.|.
T Consensus        91 ~~~~l~V~   98 (101)
T 2edk_A           91 CEAELIVE   98 (101)
T ss_dssp             ECCBEEEE
T ss_pred             EEEEEEEe
Confidence            55667776

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.41  E-value=1.8e-12  Score=80.57  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .+.|.+ +.|++++..+.....+... .+.....|.|.+++.+|+|.|+|.    .|.....+.
T Consensus        18 ~~v~~G~~v~l~C~~-~~~p~~-v~W~k~~~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~   90 (103)
T 2e7b_A           18 LEVLEGGAATLRCVL-SSVAAP-VKWCYGNNVLRPGDKYSLR-QEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSAT   90 (103)
T ss_dssp             EEEESSSCEEEEEEC-SSCCCS-CEEEESSSBCCCSSSEEEE-ECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBC
T ss_pred             EEEECCCcEEEEEEE-eCCCCC-eEEEECCEECCCCCcEEEE-EcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEE
Confidence            557789999999999 688888 9999999988766555443 334456799999999999999998    566777788


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        91 l~V~   94 (103)
T 2e7b_A           91 LTVT   94 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8888

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.41  E-value=1.8e-12  Score=91.98  Aligned_cols=116  Identities=12%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             CCCCCCcEEEEEEeecCCC-----CCEEEEEeCCEecC---------CC------CCeeEEee--ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP-----PLTIRWLKDGKPLS---------PR------FPVNVSDL--DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~---------~~------~~~~~~~~--~~~~~~l~i~~~~~~  173 (243)
                      .+..|+.+.|.|.+ .+.|     ...+.|++++..+.         ..      .+......  ......|.|.+++.+
T Consensus        12 ~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   90 (222)
T 3sbw_C           12 VVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ   90 (222)
T ss_dssp             EEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGG
T ss_pred             EEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccc
Confidence            45689999999998 4555     34899999753221         00      11111100  112468999999999


Q ss_pred             CCeeEEEEEEccCcceeeeEEEEEEeecCCCCCee----eeeccceeeeccCccccc--ccceEEeCC
Q psy11132        174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSY----TLVFSQASYMSTSYYSFE--QDSWMIDNE  235 (243)
Q Consensus       174 d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~--~~~W~~~~~  235 (243)
                      |+|.|+|.|.| .+.....+.|.|...+  ..|..    ....+..+.+.|...+.|  .+.|++++.
T Consensus        91 D~G~Y~C~~~~-~~~~~~~~~l~V~~~~--~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g  155 (222)
T 3sbw_C           91 DAGVYRCMISY-GGADYKRITVKVNAPY--NKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDH  155 (222)
T ss_dssp             GCEEEEEEEES-SSEEEEEEEEEEEBCC--CCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             cCeEEEEEEEe-CCCceeEEEEEEECCC--CCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCC
Confidence            99999999999 6666677788887322  22222    234577889999876654  899999843

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.41  E-value=1.7e-12  Score=93.48  Aligned_cols=117  Identities=9%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSS  193 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~  193 (243)
                      .+.+|++++|.|.+. + +...+.|+|++..+......  .........|.|.+++.+|+|.|+|.+.|..+..  +..+
T Consensus        17 ~v~~G~~VtL~C~~~-~-~~~~~~w~k~g~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~   92 (242)
T 1p6f_A           17 MVPKEKQVTICCQGN-Y-GAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   92 (242)
T ss_dssp             EEETTCCEEEEEECC-T-TCCEEEEEETTEEEEEECCS--SCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             ccCCCCcEEEEEeeC-C-CCcEEEEEECCCcccccccc--ccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcce
Confidence            567899999999983 3 46799999999865411000  0011235679999999999999999998865533  4456


Q ss_pred             EEEEEeecCCCCCee------eeeccceeeeccCcccc-cccceEEeCCeeE
Q psy11132        194 KLQVKGNLNRLPPSY------TLVFSQASYMSTSYYSF-EQDSWMIDNENYV  238 (243)
Q Consensus       194 ~l~v~~~~~~~~p~~------~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~  238 (243)
                      .|.|.+..  .+|.+      .+..++.+.+.|..... +.+.|+|+|+.+.
T Consensus        93 ~L~V~~~~--~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~  142 (242)
T 1p6f_A           93 DLVVTEMY--DTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSH  142 (242)
T ss_dssp             EEEEECCS--CCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCE
T ss_pred             EEEeeccc--CCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccC
Confidence            77776422  23443      34567788889976533 4899999987543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.40  E-value=5.7e-13  Score=95.15  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecC---------CCCCeeEEee----------ccceeEEEEeecCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS---------PRFPVNVSDL----------DSFSSLLSINSVSAAH  174 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~---------~~~~~~~~~~----------~~~~~~l~i~~~~~~d  174 (243)
                      ..+.+|+.+.|.|.+ .+.+. +.+.|++++....         ....+.....          ....+.|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D   88 (231)
T 2pet_A           10 VEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGD   88 (231)
T ss_dssp             EEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGG
T ss_pred             EEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCccc
Confidence            456789999999999 57774 8999998654322         0000000000          1112349999999999


Q ss_pred             CeeEEEEEEccC-cceeeeEEEEEEeecCCCCCeeee-------ecccee-eeccCc-ccc--cccceEEeCCee
Q psy11132        175 SGEYTCVASNTA-AQARYSSKLQVKGNLNRLPPSYTL-------VFSQAS-YMSTSY-YSF--EQDSWMIDNENY  237 (243)
Q Consensus       175 ~g~y~C~~~n~~-g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~-~~~~~~-~~~--~~~~W~~~~~~~  237 (243)
                      +|.|+|.|.+.. +.....+.|.|...+  ..|.+..       ..+... .+.|.. ...  +.+.|+++|..+
T Consensus        89 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p--~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~  161 (231)
T 2pet_A           89 ERDYVCVVRAGAAGTAEATARLNVFAKP--EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL  161 (231)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEEEEEBCC--CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred             CceEEEEEEecCCCceEEEEEEEEEecC--CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccC
Confidence            999999999987 777777888887432  2244332       234445 889977 443  589999998764

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=81.72  Aligned_cols=85  Identities=22%  Similarity=0.356  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+..|+.+.|.|.+ . .|.+.+.|++++..+.......... +.....|.|.++..+|+|.|+|.|.|    ....+.|
T Consensus        24 ~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l   96 (113)
T 2cpc_A           24 AAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQK-EDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTV   96 (113)
T ss_dssp             EEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEE-CSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEE
T ss_pred             EEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEE-CCCEEEEEECCCCcccCEEEEEEEec----CcEEEEE
Confidence            45689999999998 3 7888999999999987665544432 23346899999999999999999998    5567788


Q ss_pred             EEEeecCCCCCeeeeec
Q psy11132        196 QVKGNLNRLPPSYTLVF  212 (243)
Q Consensus       196 ~v~~~~~~~~p~~~~~~  212 (243)
                      .|.     .+|...+.+
T Consensus        97 ~V~-----~~p~~~~~p  108 (113)
T 2cpc_A           97 TVT-----EPPVRIIYS  108 (113)
T ss_dssp             EEE-----CCCCCCCCC
T ss_pred             EEe-----cCCchhccC
Confidence            888     566544433

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.40  E-value=2.4e-13  Score=98.25  Aligned_cols=118  Identities=17%  Similarity=0.259  Sum_probs=80.1

Q ss_pred             CCCCCCCcEEEEEEeecC---CCCCEEEEEeCCEecCC------------------------------CCCeeEEeeccc
Q psy11132        115 DGLPEGARTRVICGVTHG---DPPLTIRWLKDGKPLSP------------------------------RFPVNVSDLDSF  161 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~~~~~~~------------------------------~~~~~~~~~~~~  161 (243)
                      ..+.+|+.+.|.|.+. +   .|.+.+.|++++.....                              ..+....  ...
T Consensus        12 v~v~~G~~v~L~C~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~   88 (250)
T 2fbo_J           12 VEVHAGGTVELPCSYQ-LANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA--NLA   88 (250)
T ss_dssp             EEECTTSCEEECCEEE-ECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS--CTT
T ss_pred             eEEecCCeEEEEEEeE-cCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec--cCC
Confidence            4567899999999984 5   77889999998754310                              0000000  001


Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccCcce-----eeeEEEEEEeecCCCCCe--------eeeeccceeeeccCcccc--c
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTAAQA-----RYSSKLQVKGNLNRLPPS--------YTLVFSQASYMSTSYYSF--E  226 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~-----~~~~~l~v~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~--~  226 (243)
                      ...|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|...+  .||.        +.+..+..+.+.|.....  +
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT--PSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS--CCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC--CCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            3479999999999999999999987753     346667766321  1222        233457888999987654  4


Q ss_pred             ccceEEeCCee
Q psy11132        227 QDSWMIDNENY  237 (243)
Q Consensus       227 ~~~W~~~~~~~  237 (243)
                      .+.|++++..+
T Consensus       167 ~v~W~k~~~~~  177 (250)
T 2fbo_J          167 NVTWYTGPTFF  177 (250)
T ss_dssp             EEEEEEEEECS
T ss_pred             eeEEEeCCCcc
Confidence            89999997643

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.2e-13  Score=82.88  Aligned_cols=73  Identities=25%  Similarity=0.564  Sum_probs=58.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee--ee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR--YS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~  192 (243)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+....          ...|.|.++..+|+|.|+|.|.|..+...  ..
T Consensus        20 ~~v~~G~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~   88 (96)
T 2ens_A           20 GAVAPGGTVTLTCEV-PAQPSPQIHWMKDGVPLPLPP----------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRA   88 (96)
T ss_dssp             SEECTTCEEEEECCC-SSCSSCCCCCEESSSBCSSCC----------CSEEEEESCCTTTCEEEECEECCSSCCCEECCC
T ss_pred             CEEcCCCeEEEEEEE-ccCCCCEEEEEECCEECcCCC----------CCEEEECCCCcccCEEEEEEEEeCCCCcEEEEE
Confidence            457889999999999 688989999999998876442          35799999999999999999999765443  34


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      +.|.|.
T Consensus        89 ~~v~V~   94 (96)
T 2ens_A           89 VSISII   94 (96)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            555554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.40  E-value=1.7e-13  Score=94.53  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEe--cCC------------CCCeeEEee--ccceeEEEEeecCCCCCeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKP--LSP------------RFPVNVSDL--DSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~--~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      .+.+|+++.|.|.+ .+.|.+.+.|++++..  +..            ..+......  ......|.|.+++.+|+|.|+
T Consensus         6 ~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            6 LGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            45689999999998 5888899999998752  110            000111100  122456999999999999999


Q ss_pred             EEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCcccc--cccceEEeCCeeE
Q psy11132        180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF--EQDSWMIDNENYV  238 (243)
Q Consensus       180 C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~~  238 (243)
                      |.+.|..+    .+.+.|....  .++...+..++.+.+.|.....  +.+.|+++|..+.
T Consensus        85 C~~~~~~~----~~~l~V~~~~--~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~  139 (184)
T 2ny1_B           85 CEVEDQKE----EVQLLVFGLT--ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI  139 (184)
T ss_dssp             EEETTEEE----EEEEEEEEEE--ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             EEEEcCCC----cEEEEEEEec--CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc
Confidence            99998754    3445554322  3555677888899999987544  4899999987653

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=1.8e-12  Score=80.65  Aligned_cols=77  Identities=23%  Similarity=0.410  Sum_probs=59.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+  +.|.+.+.|+++|..+... ..+.... ++....|.|.++..+|+|.|+|.|.+    ...++
T Consensus        26 ~~v~~G~~v~L~C~~--~~p~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~~   98 (104)
T 1pd6_A           26 YQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFES-IGAKRTLTISQCSLADDAAYQCVVGG----EKCST   98 (104)
T ss_dssp             EEEETTSCEEEEEEC--SSSSSCCEEEESSSEECCCSSSSEEEE-ETTEEEEEECSCSSSSCEEEEEEETT----EEECC
T ss_pred             EEEecCCCEEEEEEE--cCCCCEEEEEECCEECCCCCCeEEEEe-cCCEEEEEECCCCcccCEEEEEEECC----CcEEE
Confidence            457789999999998  4788889999999988766 4444332 33356899999999999999999943    44555


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        99 ~l~V~  103 (104)
T 1pd6_A           99 ELFVK  103 (104)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.40  E-value=1.8e-13  Score=97.89  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             CCCCCCcEEEEEEeecCCCC--CEEEEEeCCEec-CCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        116 GLPEGARTRVICGVTHGDPP--LTIRWLKDGKPL-SPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~-~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+..|+.+.|.|.+.+..|.  ..+.|+++|..+ ...........++   ..+.|.|..+..+|+|.|+|.|.|..+..
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  103 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL  103 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC
Confidence            34689999999999644563  499999998877 3222111111111   13569999999999999999999987653


Q ss_pred             eeeEEEEEEee-cCCCCCeeeeec-------cceeeeccCcccc----cccceEEeCCee
Q psy11132        190 RYSSKLQVKGN-LNRLPPSYTLVF-------SQASYMSTSYYSF----EQDSWMIDNENY  237 (243)
Q Consensus       190 ~~~~~l~v~~~-~~~~~p~~~~~~-------~~~~~~~~~~~~~----~~~~W~~~~~~~  237 (243)
                        .+.+.|... ....+|.+.+..       +..+.+.|....+    ..+.|++||+.+
T Consensus       104 --~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l  161 (231)
T 2w59_A          104 --PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAV  161 (231)
T ss_dssp             --CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             --ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEEC
Confidence              233333211 112456554331       3467899988775    279999998765

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=82.83  Aligned_cols=82  Identities=13%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++.+..+.        ...+............|.|.+++.+|+|.|.|.|.|. 
T Consensus        11 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-   88 (124)
T 3rbg_A           11 ITVEEGQTLTLKCVT-SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-   88 (124)
T ss_dssp             EEEETTSCEEEEEEC-CCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-
T ss_pred             EEEcCCCCEEEEeEE-eccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-
Confidence            456789999999999 588899999997654321        2222223222334578999999999999999999999 


Q ss_pred             cceeeeEEEEEE
Q psy11132        187 AQARYSSKLQVK  198 (243)
Q Consensus       187 g~~~~~~~l~v~  198 (243)
                      |.....+.|.|.
T Consensus        89 g~~~~~~~l~V~  100 (124)
T 3rbg_A           89 SVSTKEVKVIVL  100 (124)
T ss_dssp             SEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            888888999988

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.39  E-value=4.3e-12  Score=84.00  Aligned_cols=82  Identities=21%  Similarity=0.366  Sum_probs=62.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe---------CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK---------DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~---------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+.+|+++.|.|.+ .+.+.+.+.|++         ++..+. ..+............|.|.+++.+|+|.|.|.+.|.
T Consensus        48 ~~v~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  125 (145)
T 1z9m_A           48 ETVVAGGTVVLKCQV-KDHEDSSLQWSNPAQQTLYFGEKRALR-DNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM  125 (145)
T ss_dssp             EEEETTSCEEEEEEC-SCCTTCCEEEECTTCCEEEETTEECSC-CTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             EEEEcCCCEEEEEEE-cCCCCcEEEEECCCCcEEEECCceecc-cCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC
Confidence            567899999999999 577888999994         333332 223333333334578999999999999999999999


Q ss_pred             CcceeeeEEEEEEe
Q psy11132        186 AAQARYSSKLQVKG  199 (243)
Q Consensus       186 ~g~~~~~~~l~v~~  199 (243)
                       |.....+.|.|..
T Consensus       126 -~~~~~~~~L~V~~  138 (145)
T 1z9m_A          126 -PVRTAKSLVTVLG  138 (145)
T ss_dssp             -SCEEEEEEEEEEC
T ss_pred             -CCceEEEEEEEEe
Confidence             8888888888883

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-12  Score=78.23  Aligned_cols=77  Identities=17%  Similarity=0.336  Sum_probs=61.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+  +.|.+.+.|++++..+.....+.... .+....|.|.+++.+|+|.|+|.|    |....++.
T Consensus        18 ~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~   90 (95)
T 2k1m_A           18 VEVAAGSPAVFEAET--ERAGVKVRWQRGGSDISASNKYGLAT-EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFD   90 (95)
T ss_dssp             EEEETTSCEEEEEEC--SSSSCCCEEECSSSEECSSTTCEEEE-ETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEE
T ss_pred             EEEeCCCcEEEEEEe--CCCCCeEEEEECCEECCCCCcEEEEE-cCCEEEEEEcCCCcccCEEEEEEE----CCceEEEE
Confidence            456789999999998  57888999999999887665554433 333568999999999999999999    55666677


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        91 l~V~   94 (95)
T 2k1m_A           91 LKVI   94 (95)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7664

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.39  E-value=4.1e-12  Score=92.07  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=80.4

Q ss_pred             CCCCCCCcEEEEEEeecCCC-----CCEEEEEeCCE--ec-----------C-CCCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP-----PLTIRWLKDGK--PL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~--~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|+++.|.|.+ .+.+     .+.+.|++++.  .+           . ...++.... ......|.|.+++.+|+
T Consensus        44 ~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~  121 (252)
T 3bkj_L           44 LPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-SGTDFTLRISRVEAEDL  121 (252)
T ss_dssp             EEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGC
T ss_pred             EEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-cCCEEEEEECCCCcccC
Confidence            456789999999999 5776     58999998542  11           0 011222221 23356899999999999


Q ss_pred             eeEEEEEEccCcce-eeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        176 GEYTCVASNTAAQA-RYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       176 g~y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      |.|.|.+.|..+.. .....+.|...  ..+|.+.+.       .++.+.+.|....+ |   .+.|+++|..+
T Consensus       122 G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          122 GVYYCFQASLVPLTFGAGTKLELKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             EEEEEEECSBSSCEECCCEEEEECCC--CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEEEEEEEcCCccEECCCEEEEEeCC--CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            99999999976532 23345666521  235666543       25688899988663 2   59999998764

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.38  E-value=1.8e-12  Score=94.11  Aligned_cols=136  Identities=15%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             eEEEec---CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          3 VIFSTV---PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         3 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|.|..   +|.+...+. ..+.+|++++|.|.+. +. .+.+.|+|+|..+.................|.|.+++  |+
T Consensus        98 ~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~-~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~  172 (257)
T 1b6u_A           98 DIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSR-SS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HG  172 (257)
T ss_dssp             EEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECS-SC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SC
T ss_pred             EEecccCCCCcceEccCC-CccCCCCEEEEEEeCC-CC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cC
Confidence            455543   455555443 4688999999999984 44 3589999999766532211111111125789999998  99


Q ss_pred             eeEEEEEEeCCC-----cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132         80 GNYSCTVRNMVA-----EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  145 (243)
Q Consensus        80 G~Y~C~~~~~~~-----~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  145 (243)
                      |.|+|.+.+...     ..+..+.|.|..+|..............|..+.|.|.+  |.+...+.|...+.
T Consensus       173 G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~--~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          173 GTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA--EQKLISEEDLNLDL  241 (257)
T ss_dssp             EEEEEEEECSSCTTBBCCCCCCEEECCBCCC----------------------------------------
T ss_pred             EEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE--cchHHHHHHhhhhh
Confidence            999999996532     34567888888877654222211234579999999976  67788889986544

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.38  E-value=4.1e-13  Score=93.40  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC---CCCC----eeE--------EeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS---PRFP----VNV--------SDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~---~~~~----~~~--------~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|+++.|.|.+..+.+.+.+.|++++..+.   ....    ...        .... ....|.|.+++.+|+|.|.
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~   86 (193)
T 2if7_A            8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QSYSLQLSNLKMEDTGSYR   86 (193)
T ss_dssp             EEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TTCCEEECSCCGGGCEEEE
T ss_pred             EEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CCeEEEECCCCcccCceEE
Confidence            3456899999999984335567999999876442   1100    000        0001 2467999999999999999


Q ss_pred             EEEEccCcceeeeEEEEEEeecCCCCCeeeee-----ccc-eeeeccCccc---ccccceEEeCCe
Q psy11132        180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLV-----FSQ-ASYMSTSYYS---FEQDSWMIDNEN  236 (243)
Q Consensus       180 C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-----~~~-~~~~~~~~~~---~~~~~W~~~~~~  236 (243)
                      |.+.+..+.....+.|.|...+  ..|.+...     .+. .+.+.|....   .+.+.|+++|..
T Consensus        87 C~~~~~~~~~~~~~~L~V~~~~--~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~  150 (193)
T 2if7_A           87 AQISTKTSAKLSSYTLRILRQL--RNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNT  150 (193)
T ss_dssp             EEEECSSCEEEEEEEEEEECCC--EEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred             EEEEecCCCeEEEEEEEEEccC--CCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEE
Confidence            9999998877677788876321  12333332     233 6889998765   358999998754

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.38  E-value=5.8e-13  Score=93.93  Aligned_cols=120  Identities=14%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++  ..+.            ...+..... ......|.|.+++.+|+|.|.|
T Consensus         9 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   86 (212)
T 1nfd_E            9 ASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-SGTTATLTISGAQPEDEAAYYC   86 (212)
T ss_dssp             EEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEETTCCGGGCSEEEE
T ss_pred             EEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-eCCEEEEEECcCCcccCEEEEE
Confidence            346789999999997 67777789999843  2220            012222222 3345689999999999999999


Q ss_pred             EEEccCc-ce--eeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc----cccceEEeCCee
Q psy11132        181 VASNTAA-QA--RYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF----EQDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g-~~--~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~----~~~~W~~~~~~~  237 (243)
                      .|.|..+ ..  .....+.|.... ..+|.+.+.       .++.+.+.|.....    +.+.|+++|..+
T Consensus        87 ~~~n~~~~~~~~~~~~~l~V~~~~-~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  156 (212)
T 1nfd_E           87 LSSYGDNNDLVFGSGTQLTVLRGP-KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATI  156 (212)
T ss_dssp             EEEETTTTEEEECCCEEEEEECCC-CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEEcccCcccccCCceEEEEccCC-CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEc
Confidence            9997322 21  233556664322 145555442       36688899987755    379999998654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.38  E-value=7.5e-12  Score=90.52  Aligned_cols=117  Identities=14%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEe-------------c-CCCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-------------L-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-------------~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|+++...             . ....++.. ........|.|.+++.+|+|.|.|
T Consensus        14 ~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~v~~~D~G~Y~C   91 (250)
T 3esu_F           14 LSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSG-SGSGTDYSLTISNLEQEDIGTYFC   91 (250)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE-EEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEE-eCCCCEEEEEEccCChhhCEEEEE
Confidence            346789999999999 6888889999985310             0 01112211 222335689999999999999999


Q ss_pred             EEEccCcce-eeeEEEEEEee---------------------cCCCCCeeeeeccceeeeccCccc----ccccceEEe
Q psy11132        181 VASNTAAQA-RYSSKLQVKGN---------------------LNRLPPSYTLVFSQASYMSTSYYS----FEQDSWMID  233 (243)
Q Consensus       181 ~~~n~~g~~-~~~~~l~v~~~---------------------~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~W~~~  233 (243)
                      .|.|..+.. .....|.|...                     ....|+...+..++.+.+.|....    .+.+.|+++
T Consensus        92 ~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F           92 QQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             EECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             EEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            999976543 23345555431                     011234456677888999998654    458999998

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=6.1e-12  Score=78.12  Aligned_cols=79  Identities=25%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+  +.|.+.+.|++++..+.....+... .+.....|.|.++..+|+|.|+|.    .|.....+.
T Consensus        18 ~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~   90 (103)
T 2dku_A           18 LQVEEKGTAVFTCKT--EHPAATVTWRKGLLELRASGKHQPS-QEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQ   90 (103)
T ss_dssp             EEEETTSEEEEEEEC--SSCCSCCEEEESSCBCCSSSSEEEE-EETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEE
T ss_pred             EEEeCCCcEEEEEEe--CCCCCeEEEEeCCEECCCCCeEEEE-eCCCEEEEEECCCCcccCEEEEEE----eCCceEEEE
Confidence            557789999999995  6788899999999998876655544 233456899999999999999998    566777788


Q ss_pred             EEEEee
Q psy11132        195 LQVKGN  200 (243)
Q Consensus       195 l~v~~~  200 (243)
                      |.|.+.
T Consensus        91 l~V~~~   96 (103)
T 2dku_A           91 LLVQGR   96 (103)
T ss_dssp             EEEECS
T ss_pred             EEEeCc
Confidence            888743

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.36  E-value=6.8e-12  Score=91.74  Aligned_cols=121  Identities=17%  Similarity=0.280  Sum_probs=80.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec------------CCC----CCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL------------SPR----FPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~------------~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|+++.|.|.+.  .+.+.+.|++.  +...            ...    .+............|.|.+++.+|+|
T Consensus        36 v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G  113 (268)
T 3pl6_D           36 KVTEKGKYVELRCDPI--SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA  113 (268)
T ss_dssp             EEEETTCCEEEEEBCB--TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEEEeC--CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence            4567899999999983  57789999982  2111            000    22222222233578999999999999


Q ss_pred             eEEEEEEcc--CcceeeeEEEEEEeec-CCCCCeeeee--------ccceeeeccCcccc---c-ccceEEeCCee
Q psy11132        177 EYTCVASNT--AAQARYSSKLQVKGNL-NRLPPSYTLV--------FSQASYMSTSYYSF---E-QDSWMIDNENY  237 (243)
Q Consensus       177 ~y~C~~~n~--~g~~~~~~~l~v~~~~-~~~~p~~~~~--------~~~~~~~~~~~~~~---~-~~~W~~~~~~~  237 (243)
                      .|.|.+.|.  .+.......+.|.... ...+|.+.+.        .++.+.+.|....+   + .+.|++||+.+
T Consensus       114 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l  189 (268)
T 3pl6_D          114 VYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  189 (268)
T ss_dssp             EEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEE
T ss_pred             EEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEEC
Confidence            999999984  3333445567776422 2235654432        25788899987663   2 79999999765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.36  E-value=2.8e-12  Score=90.90  Aligned_cols=120  Identities=18%  Similarity=0.290  Sum_probs=79.7

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC------C-----------CCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS------P-----------RFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~------~-----------~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+. +.+  .+.+.|+++  +..+.      .           ..+...... ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (219)
T 1c1e_H           10 ELKKPGETVKISCKAS-GYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN   88 (219)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             eEecCCCcEEEEEEEe-CcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            3467899999999994 654  689999986  32211      0           112222211 12356899999999


Q ss_pred             CCCeeEEEEEEccCcc----eeeeEEEEEEeecCCCCCeeee-------eccceeeeccCccc-c--c-ccceEEeCCe
Q psy11132        173 AHSGEYTCVASNTAAQ----ARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYS-F--E-QDSWMIDNEN  236 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~----~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~-~--~-~~~W~~~~~~  236 (243)
                      +|+|.|.|.+.|..+.    ....+.|.|..... .+|.+..       ..++.+.+.|.... .  + .+.|+++|..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H           89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT-TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC-BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ccCEEEEEEEeccCcccceeecCceEEEEecCCC-CCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            9999999999998632    22346677664221 2344432       34678889998765 3  4 8999999865

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.36  E-value=5.9e-13  Score=84.80  Aligned_cols=83  Identities=24%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccceeEEE--EeecCCCCCeeEEEEEEccCcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFSSLLS--INSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~--i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.....    .......+....+.  +.+++.+|+|.|.|.|.|..|.
T Consensus        19 ~~v~~G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~   97 (117)
T 2v9t_A           19 LIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE   97 (117)
T ss_dssp             EEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEE
T ss_pred             EEEcCCCcEEEEEEC-CccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccc
Confidence            456789999999999 5899999999999998875421    11111111111222  2255789999999999999998


Q ss_pred             ee-eeEEEEEE
Q psy11132        189 AR-YSSKLQVK  198 (243)
Q Consensus       189 ~~-~~~~l~v~  198 (243)
                      .. ..+.+.+.
T Consensus        98 ~~s~~~~l~~~  108 (117)
T 2v9t_A           98 AVSHDASLEVA  108 (117)
T ss_dssp             EECCCEEEEEC
T ss_pred             eEeeeEEEEhh
Confidence            75 44666665

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.36  E-value=5.1e-13  Score=96.02  Aligned_cols=119  Identities=14%  Similarity=0.182  Sum_probs=77.9

Q ss_pred             CCCCCcEEEEEEeecCC---CCC-EEEEEeCCEecCCCCCee-EEeec---cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGD---PPL-TIRWLKDGKPLSPRFPVN-VSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~---p~~-~~~W~~~~~~~~~~~~~~-~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +..|+++.|.|.+. +.   |.+ .+.|++++..+....... .....   ...+.|.|..++.+|+|.|.|.|.|..+.
T Consensus        29 v~~G~~v~L~C~~~-g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVV-DISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEE-EECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEe-cCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            57899999999996 54   655 999999886654321100 00000   12357999999999999999999998875


Q ss_pred             eeeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        189 ARYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       189 ~~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      ......+... .....+|.+.+.+       ++.+.+.|....+ |   .+.|++||+.+
T Consensus       108 ~~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l  166 (239)
T 1i1c_A          108 APIEKSISKP-EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQ  166 (239)
T ss_dssp             SCEEEEECCC-SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCcEEEEecC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEEC
Confidence            4322222110 0122566655432       3568899988764 2   68999998754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.36  E-value=4.3e-12  Score=89.08  Aligned_cols=97  Identities=24%  Similarity=0.418  Sum_probs=71.2

Q ss_pred             eEEEecC---CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132          3 VIFSTVP---PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus         3 ~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .|.|..+   |.+......  +.+|+.+.|.|.+. +.| +.+.|++++..+....++....   ....|.|.+++.+|+
T Consensus       103 ~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~-~~p-p~i~W~~~g~~l~~~~~~~~~~---~~~~L~i~~v~~~d~  175 (208)
T 3r4d_A          103 RFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSN-DIG-ANIQWLFNSQSLQLTERMTLSQ---NNSILRIDPIKREDA  175 (208)
T ss_dssp             EEEEECCCCCCEEEESCSS--CCTTCCEEEEEECS-CTT-CEEEEEETTEECCCCSSEEEET---TTTEEEESSCCGGGC
T ss_pred             EEEeccCCCCCEEecCCce--EeeCCCEEEEEECC-CCC-CceEEEECCEeCCCCCCeEEcC---CCCEEEEeccCHHhC
Confidence            4566655   444443333  88999999999985 555 6999999999988766654332   247899999999999


Q ss_pred             eeEEEEEEeCCCc-ceeEEEEEEEcCCC
Q psy11132         80 GNYSCTVRNMVAE-DTQVQRLIVNVPPK  106 (243)
Q Consensus        80 G~Y~C~~~~~~~~-~~~~~~l~v~~~p~  106 (243)
                      |.|+|.+.|..|. .+..+.|.|..++.
T Consensus       176 G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          176 GEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             EEEEEEEECTTCCEECCCEEECCC----
T ss_pred             eEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            9999999999887 45677777766554

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.36  E-value=3.3e-12  Score=93.31  Aligned_cols=117  Identities=17%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             CCCCCCCcEEEEEEeec--CCCCCEEEEEeCCEecCCC------------------CCeeEE-eeccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTH--GDPPLTIRWLKDGKPLSPR------------------FPVNVS-DLDSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~~~~~~~~------------------~~~~~~-~~~~~~~~l~i~~~~~~  173 (243)
                      ..+.+|+.+.|.|.+..  +.+.+.+.|++++......                  .+.... ........|.|.+++.+
T Consensus        15 ~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   94 (268)
T 3mj6_A           15 LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA   94 (268)
T ss_dssp             EEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGG
T ss_pred             eEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHh
Confidence            45678999999999831  5677889999965433211                  111110 00122367999999999


Q ss_pred             CCeeEEEEEEccCcce--eeeEEEEEEeecCCCCCeeeeeccceeeeccCc---cc--ccccceEEeC
Q psy11132        174 HSGEYTCVASNTAAQA--RYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSY---YS--FEQDSWMIDN  234 (243)
Q Consensus       174 d~g~y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~---~~--~~~~~W~~~~  234 (243)
                      |+|.|+|.|.|..+..  ...+.|.|.   +..|....+..+..+.+.|..   ..  .+.+.|++++
T Consensus        95 D~G~Y~C~~~~~~~~~~~~~~~~l~V~---~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           95 DEGIYTCEIRLKNESMVMKKPVELWVL---PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             GCEEEEEEEEETTCCCEEEEEEEEEEE---CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             HCEEEEEEEEecCCcceEEEEEEEEEe---ccCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            9999999999976554  344555554   225666788889999999988   33  3489999953

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.36  E-value=6.8e-12  Score=90.47  Aligned_cols=121  Identities=21%  Similarity=0.287  Sum_probs=79.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe--------------CCEecCCC----CCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK--------------DGKPLSPR----FPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|+++.|.| . .+.+.+.+.|++              ++......    .+............|.|.+++.+|+|
T Consensus        12 v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   89 (245)
T 4ei6_B           12 QIIDMGQMVTLNC-D-PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA   89 (245)
T ss_dssp             EEEETTCCEEEEE-E-CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEE-E-cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence            4567899999999 4 477888999998              22111111    22333322234568999999999999


Q ss_pred             eEEEEEEccC----cceeeeEEEEEEeec-CCCCCeeeee--------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        177 EYTCVASNTA----AQARYSSKLQVKGNL-NRLPPSYTLV--------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       177 ~y~C~~~n~~----g~~~~~~~l~v~~~~-~~~~p~~~~~--------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .|.|.+.+..    +.......+.|.... ...+|.+.+.        .++.+.+.|....+ +   .+.|++||..+
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l  167 (245)
T 4ei6_B           90 VYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (245)
T ss_dssp             EEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence            9999999632    233344567666321 1235554432        26788899987663 2   79999998654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=93.79  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ec-------------C----CCCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PL-------------S----PRFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~-------------~----~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|+++.|.|.+ .+.+.+.+.|++++.  ..             .    ...+............|.|.+++.+|+
T Consensus        34 v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~  112 (279)
T 2wbj_D           34 VISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS  112 (279)
T ss_dssp             EEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGC
T ss_pred             EEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCC
Confidence            446789999999999 577888999998541  10             0    011222222223456899999999999


Q ss_pred             eeEEEEEEccCc------ceeeeEEEEEEeec-CCCCCeeeee--------ccceeeeccCcccc----cccceEEeCCe
Q psy11132        176 GEYTCVASNTAA------QARYSSKLQVKGNL-NRLPPSYTLV--------FSQASYMSTSYYSF----EQDSWMIDNEN  236 (243)
Q Consensus       176 g~y~C~~~n~~g------~~~~~~~l~v~~~~-~~~~p~~~~~--------~~~~~~~~~~~~~~----~~~~W~~~~~~  236 (243)
                      |.|.|.+.|..+      .....+.|.|.... ...+|.+.+.        .+..+.+.|....+    +.+.|++||+.
T Consensus       113 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  192 (279)
T 2wbj_D          113 SFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  192 (279)
T ss_dssp             EEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             EEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEE
Confidence            999999999432      11233567776422 1246766543        25678899988765    37999999865


Q ss_pred             e
Q psy11132        237 Y  237 (243)
Q Consensus       237 ~  237 (243)
                      +
T Consensus       193 l  193 (279)
T 2wbj_D          193 V  193 (279)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.35  E-value=6.6e-13  Score=95.03  Aligned_cols=119  Identities=16%  Similarity=0.287  Sum_probs=63.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ec----------CC--CCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PL----------SP--RFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++.  .+          ..  ..+.... .......|.|.+++.+|+|.|.|
T Consensus        33 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C  110 (233)
T 3bqu_C           33 LSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSS-GYGTDFVFTIENMLSEDVADYYC  110 (233)
T ss_dssp             C-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCC-EEEEEEEEC-----CCCCSEEEE
T ss_pred             EEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEee-ccCCEEEEEECCCCHHHCEEEEE
Confidence            557889999999998 466677899998532  11          00  1111111 12224579999999999999999


Q ss_pred             EEEccCcce-eeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        181 VASNTAAQA-RYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       181 ~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .+.|..+.. .....+.|...  ..+|.+.+.+       ++.+.+.|..... |   .+.|+++|..+
T Consensus       111 ~~~~~~~~~~~~~~~l~V~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  177 (233)
T 3bqu_C          111 LQSDNLPYTFGGGTNLEIKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  177 (233)
T ss_dssp             EECSSSSCCBCCCCBC---CC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred             EEecCCceeecCCEEEEEeCC--CCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence            999876533 22344555421  1366665432       6788999987664 2   59999998754

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7.2e-12  Score=77.64  Aligned_cols=76  Identities=32%  Similarity=0.510  Sum_probs=61.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+.+|+.+.|.|.+ . .|.+.+.|++++..+.......... ......|.|.++..+|+|.|+|.|.|    ...++.|
T Consensus        22 ~v~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~~l   94 (102)
T 2eo1_A           22 QAEAGASATLSCEV-A-QAQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRL   94 (102)
T ss_dssp             EEETTCCEEECCBC-S-CSSSCCEEEETTEECCCCSSEEEEE-ETTEEEEEETTCCTTTCSCEEEEETT----EECCEEE
T ss_pred             EEeCCCcEEEEEEe-c-CCCCceEEEECCEECCCCCCEEEEE-cCCEEEEEECCCCcccCEEEEEEcCC----CcEEEEE
Confidence            46789999999998 4 7889999999999987766544432 33457899999999999999999954    4566788


Q ss_pred             EEE
Q psy11132        196 QVK  198 (243)
Q Consensus       196 ~v~  198 (243)
                      .|.
T Consensus        95 ~V~   97 (102)
T 2eo1_A           95 QVA   97 (102)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            887

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.04  E-value=7.1e-14  Score=95.90  Aligned_cols=130  Identities=16%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---ec---------CCCceEEEE-eeeeceEEEEeecCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---LD---------NSAALSITH-VDQYNSMLVIDSVSARH   78 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~---------~~~~~~~~~-~~~~~~~l~i~~~~~~d   78 (243)
                      ..+..+.+.+|++++|.|.+. +.+...+.|+|..  ..   +.         ...++.+.. .......|+|.+++.+|
T Consensus         5 Q~p~~v~v~~G~svtL~C~~s-~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~D   83 (185)
T 3c6l_A            5 QSPQSLTVWEGETAILNCSYE-DSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGD   83 (185)
Confidence            335567789999999999985 4344589999853  11   10         112232221 12235689999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcC-----CCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVP-----PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  150 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  150 (243)
                      +|.|.|.+.+....-.....|.|...     |.+....      .....++|.|.+.+.+|.+++.|..+.......
T Consensus        84 sG~Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~~~------~~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~~  154 (185)
T 3c6l_A           84 SATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLK------DPRSQDSTLCLFTDFDSQINVPKTMESGTFITD  154 (185)
Confidence            99999998752111111234555432     2121111      112378999999777899999998877655443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.34  E-value=3.1e-12  Score=87.83  Aligned_cols=119  Identities=13%  Similarity=0.127  Sum_probs=78.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecC---CCCCe--------eEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLS---PRFPV--------NVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~---~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      ..+.+|++++|.|.+....+.+.+.|+++ +..+.   .....        .....+..+..|.|.+++.+|+|.|.|.+
T Consensus         9 v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v   88 (180)
T 2dru_A            9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM   88 (180)
T ss_dssp             EEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEE
T ss_pred             EEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEE
Confidence            34678999999998732234689999994 32211   00000        00111123567999999999999999999


Q ss_pred             EccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCc-cc-ccccceEEeCCee
Q psy11132        183 SNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSY-YS-FEQDSWMIDNENY  237 (243)
Q Consensus       183 ~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~-~~-~~~~~W~~~~~~~  237 (243)
                      .+.. .....+.|.|...+  ..|.+.... ..+.+.|.. .. .+.+.|+++|..+
T Consensus        89 ~~~~-~~~~~~~L~V~~~~--~~P~i~~~~-~~v~L~C~~~~gp~p~i~W~~~~~~l  141 (180)
T 2dru_A           89 LHET-EDQWKITMEVYEMV--SKPMIYWEC-SNATLTCEVLEGTDVELKLYQGKEHL  141 (180)
T ss_dssp             ESSS-EEEEEEEEEEECCC--CCCEEEEEG-GGTEEEEECSSCTTCEEEEEETTEEE
T ss_pred             EcCC-eEEEEEEEEEECCC--CCCEEEecC-CCEEEEEEeCCCCCCEEEEEECCeEC
Confidence            8876 55666777777422  346665543 457888977 33 3489999998765

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.34  E-value=8.9e-12  Score=78.07  Aligned_cols=86  Identities=24%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      +|.+...+ ....+.+|+.+.|.|.+ .+.  +.+.|++++..+.....+.... ......|.|.+++.+|+|.|+|.|.
T Consensus         8 pp~~~~~~-~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A            8 PARFTQDL-KTKEASEGATATLQCEL-SKV--APVEWKKGPETLRDGGRYSLKQ-DGTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             CCCBCSCC-BCCEEETTSCEEEEEEB-SSS--CCCEEESSSSBCCSSSSCEEEE-ETTEEEEEESSCCTTTCSEEEEEET
T ss_pred             CCeeeecC-CcEEEeCCCcEEEEEEe-CCC--CeeEEEECCEECCCCCCEEEEe-cCCEEEEEECCCCcccCEEEEEEEc
Confidence            34443333 23567889999999998 454  6899999999887665554443 3345679999999999999999995


Q ss_pred             ccCcceeeeEEEEEE
Q psy11132        184 NTAAQARYSSKLQVK  198 (243)
Q Consensus       184 n~~g~~~~~~~l~v~  198 (243)
                      |    ....+.|.|.
T Consensus        83 n----~~~~~~l~V~   93 (108)
T 2dm7_A           83 Q----ERTSATLTVR   93 (108)
T ss_dssp             T----EEEEEECEEE
T ss_pred             C----CEEEEEEEEe
Confidence            4    5666777777

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.34  E-value=1.7e-12  Score=89.84  Aligned_cols=163  Identities=17%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEE-eeeeceEEEEeecCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITH-VDQYNSMLVIDSVSAR   77 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~~   77 (243)
                      ...+..+.+.+|+.++|.|.+... ....+.|||.  |+.+.            ...|+.... .......|+|.+++.+
T Consensus         4 tQ~p~~v~v~~G~svtL~C~~s~~-~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~   82 (200)
T 3rgv_A            4 TQMQGQVTLSENDFLFINCTYSTT-GYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEI   82 (200)
T ss_dssp             ECCCSEEEEETTCCEEECCEEECS-SCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred             EECCCEEEEeCCCCEEEEEEecCC-CCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCc
Confidence            344556778999999999999633 3458999984  22110            012333221 1223578999999999


Q ss_pred             CCeeEEEEEEeCCCc-ceeEEEEEEEcC---CCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132         78 HSGNYSCTVRNMVAE-DTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  153 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~-~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  153 (243)
                      |+|.|.|.+...... -.....|.|...   +.+......  ..  ...++|.|.+.+.+|...+.|+++|..+......
T Consensus        83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~--~~--~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~~t~  158 (200)
T 3rgv_A           83 DSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLR--DS--KSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCV  158 (200)
T ss_dssp             TCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEEE--ES--SSSSCEEEEEESCCTTCCCCCCSSTTCEECCCEE
T ss_pred             cCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEcc--CC--CCCceEEEEcccccCCeEeEeccCCcEEeecceE
Confidence            999999999742111 112245666542   222221111  01  1236789999877787899999999887765443


Q ss_pred             eEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        154 NVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      .........+...   +...+...|.|.+.
T Consensus       159 ~~~~~~~~~~~~~---~~w~~~~~~~c~~~  185 (200)
T 3rgv_A          159 LDMRSMDFKSNSA---VAWSNKSDFACANA  185 (200)
T ss_dssp             EEEGGGTEEEEEE---EEECSCSSCCTTTT
T ss_pred             Eccccccccccce---EEecCCCceEeeee
Confidence            3332222122222   23455566777654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.33  E-value=8.4e-12  Score=90.70  Aligned_cols=121  Identities=14%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--EecC----------------CCCCeeEEee-ccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KPLS----------------PRFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~----------------~~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      ..+.+|+++.|.|.+ .+.|  .+.+.|++++  ..+.                ...++..... ......|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B           10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             SEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             ccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            456789999999999 4664  6899999852  1110                0112222221 233568999999999


Q ss_pred             CCeeEEEEEEccCc-------ce--eeeEEEEEEeec-----------------CCCCCeeeeeccceeeeccCcccc--
Q psy11132        174 HSGEYTCVASNTAA-------QA--RYSSKLQVKGNL-----------------NRLPPSYTLVFSQASYMSTSYYSF--  225 (243)
Q Consensus       174 d~g~y~C~~~n~~g-------~~--~~~~~l~v~~~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~--  225 (243)
                      |+|.|.|.|.|..|       ..  ...+.|.|...+                 ...|..+.+..++.+.+.|.....  
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999999854       11  134566666321                 001223445667888999976544  


Q ss_pred             cccceEE--eCCe
Q psy11132        226 EQDSWMI--DNEN  236 (243)
Q Consensus       226 ~~~~W~~--~~~~  236 (243)
                      +.+.|++  +|+.
T Consensus       169 ~~v~W~k~~~g~~  181 (257)
T 1f3r_B          169 NYLAWYQQKLGEA  181 (257)
T ss_dssp             TCEEEEEECTTSC
T ss_pred             CcEEEEEECCCCC
Confidence            4899999  4543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.33  E-value=8.4e-12  Score=90.08  Aligned_cols=121  Identities=15%  Similarity=0.215  Sum_probs=77.8

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCE--ec-----------------CCCCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGK--PL-----------------SPRFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~--~~-----------------~~~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+ .+.|  .+.+.|+++..  ..                 ....+...... ......|.|.+++.
T Consensus        12 ~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             EEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            456789999999999 4766  67899998421  10                 01122222222 23356899999999


Q ss_pred             CCCeeEEEEEEccCcc--eeeeEEEEEEeecC----------CCC-------CeeeeeccceeeeccCcccc--cccceE
Q psy11132        173 AHSGEYTCVASNTAAQ--ARYSSKLQVKGNLN----------RLP-------PSYTLVFSQASYMSTSYYSF--EQDSWM  231 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~--~~~~~~l~v~~~~~----------~~~-------p~~~~~~~~~~~~~~~~~~~--~~~~W~  231 (243)
                      +|+|.|.|.|.|..+.  ....+.|.|...+.          ..+       ..+.+..++.+.+.|.....  +.+.|+
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~  170 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWY  170 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence            9999999999997332  22345666653210          012       23345667888889976554  489999


Q ss_pred             E--eCCe
Q psy11132        232 I--DNEN  236 (243)
Q Consensus       232 ~--~~~~  236 (243)
                      +  +|..
T Consensus       171 k~~~g~~  177 (247)
T 2ghw_B          171 QQKPGQA  177 (247)
T ss_dssp             EECTTSC
T ss_pred             EECCCCC
Confidence            9  4543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.33  E-value=5e-12  Score=89.78  Aligned_cols=120  Identities=16%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--EecC-------------------CCCCeeEEee-ccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KPLS-------------------PRFPVNVSDL-DSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~-------------------~~~~~~~~~~-~~~~~~l~i~~~  170 (243)
                      ..+.+|+++.|.|.+. +.+  .+.+.|+++.  ....                   ...+...... ......|.|.++
T Consensus        10 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATS-GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             eeEcCCCEEEEEEEec-CccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            3467899999999994 654  6799999843  1100                   0112222221 123568999999


Q ss_pred             CCCCCeeEEEEEEccCc-----ceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCcccc---c-ccceEEeC
Q psy11132        171 SAAHSGEYTCVASNTAA-----QARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSF---E-QDSWMIDN  234 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g-----~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~---~-~~~W~~~~  234 (243)
                      +.+|+|.|.|.+.|..+     .......|.|..... .+|.+..       ..++.+.+.|....+   + .+.|+++|
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  167 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT-TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  167 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC-BCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC-CCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCC
Confidence            99999999999999765     222345666663221 3444433       246788899988654   3 89999998


Q ss_pred             Ce
Q psy11132        235 EN  236 (243)
Q Consensus       235 ~~  236 (243)
                      ..
T Consensus       168 ~~  169 (222)
T 1q9r_B          168 LS  169 (222)
T ss_dssp             BC
T ss_pred             eE
Confidence            64

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.32  E-value=6.3e-12  Score=88.29  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=93.8

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--e---ee-c--C------CCceEEEE-eeeeceEEEEeecCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--R---YL-D--N------SAALSITH-VDQYNSMLVIDSVSARH   78 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~---~~-~--~------~~~~~~~~-~~~~~~~l~i~~~~~~d   78 (243)
                      ..+..+.+.+|+.++|.|.+. +.....+.|||..  .   .+ .  .      ..++.... .......|+|.+++.+|
T Consensus         8 Q~p~~~~v~~G~svtL~C~~s-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~D   86 (210)
T 2eys_A            8 QSPQSLIILEGKNCTLQCNYT-VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   86 (210)
T ss_dssp             EECSEEEEETTCCEEEEEEEC-CSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeCCEEEEecCCCEEEEEEEC-CCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCccc
Confidence            335567789999999999985 4444589999843  1   11 1  1      12333221 11224689999999999


Q ss_pred             CeeEEEEEEeCC---Ccc--eeEEEEEEEcCC---CccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC
Q psy11132         79 SGNYSCTVRNMV---AED--TQVQRLIVNVPP---KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  150 (243)
Q Consensus        79 ~G~Y~C~~~~~~---~~~--~~~~~l~v~~~p---~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  150 (243)
                      +|.|.|.+.+..   ...  .....|.|...+   .+......  .  ....++|.|.+.+..|.+.+.+   +.   ..
T Consensus        87 sg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~--~--~~~~~tl~Cl~~gf~P~~~v~~---~~---~~  156 (210)
T 2eys_A           87 SASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLR--D--SKSSDKSVCLFTDFDSQTNVSQ---SK---DS  156 (210)
T ss_dssp             CEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEEC--C--CSSSSCEEEEEESCCTTCCCCC---CS---ST
T ss_pred             CceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecC--C--CCCCceEEEEcccccCCcEecc---cc---Cc
Confidence            999999998642   111  122456665421   11111111  1  1227789999965556544311   10   01


Q ss_pred             CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        151 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                       ... .   .....|.+..+...+.|.|.|.+.|..+.
T Consensus       157 -~~~-~---t~~~~l~~~~~~~~~~~~~~w~~~~~~~c  189 (210)
T 2eys_A          157 -DVY-I---TDKCVLDMRSMDFKSNSAVAWSNKSDFAC  189 (210)
T ss_dssp             -TEE-E---CCCEEEEETTTTEEEEEEEEEECSTTCCH
T ss_pred             -ceE-c---cCchhcchhcccccccchhhccCCCceEE
Confidence             010 0   11346777777778899999999887763

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.32  E-value=1.6e-11  Score=89.19  Aligned_cols=122  Identities=14%  Similarity=0.269  Sum_probs=80.3

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--EecC-----------------CCCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KPLS-----------------PRFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|++++|.|.+ .+.|  .+.+.|++++  ..+.                 ...+...... ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (256)
T 1nqb_A           10 ELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS   88 (256)
T ss_dssp             EEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence            456789999999998 5665  6799999842  2110                 0112222221 13356899999999


Q ss_pred             CCCeeEEEEEEccCcc-----eeeeEEEEEEeecC--CCCCeeeeeccceeeeccCcccc--c-----ccceEE--eCCe
Q psy11132        173 AHSGEYTCVASNTAAQ-----ARYSSKLQVKGNLN--RLPPSYTLVFSQASYMSTSYYSF--E-----QDSWMI--DNEN  236 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~-----~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~~~~~~--~-----~~~W~~--~~~~  236 (243)
                      +|+|.|.|.+.|..|.     ....+.|.|...+.  ..|..+.+..++.+.+.|.....  +     .+.|+|  +|..
T Consensus        89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~  168 (256)
T 1nqb_A           89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQS  168 (256)
T ss_dssp             GGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSC
T ss_pred             hhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCC
Confidence            9999999999998663     12345666653221  12334567778889999976543  2     899999  5554


Q ss_pred             e
Q psy11132        237 Y  237 (243)
Q Consensus       237 ~  237 (243)
                      +
T Consensus       169 ~  169 (256)
T 1nqb_A          169 P  169 (256)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.32  E-value=1.1e-11  Score=99.72  Aligned_cols=91  Identities=21%  Similarity=0.350  Sum_probs=79.6

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+...+....+.+|+++.|.|.+. |.|.+.++|++++.++..+.++.+...+ ...+|.|.++.+.|+|.|+|.|.|
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~-g~P~P~v~W~k~~~el~~s~~~~i~~~~-~~~~L~I~~~~~~D~G~Yt~~A~N  559 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLTINRVKGDDKGEYTVRAKN  559 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEE-CSSCCEEEEEETTEECCSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEE-ccCCCeEEEEECCEEcccCCcEEEEEcC-CEEEEEEcCCCcccCcEEEEEEEe
Confidence            45666666778899999999999995 8899999999999999988888776544 467899999999999999999999


Q ss_pred             CCCcceeEEEEEE
Q psy11132         89 MVAEDTQVQRLIV  101 (243)
Q Consensus        89 ~~~~~~~~~~l~v  101 (243)
                      ..|..+..+.|+|
T Consensus       560 ~~G~~~~~v~l~V  572 (573)
T 3uto_A          560 SYGTKEEIVFLNV  572 (573)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999998888887

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.32  E-value=1.1e-11  Score=88.98  Aligned_cols=117  Identities=16%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             CCCCCCCcEEEEEEeecCCC----CCEEEEEeCC--EecC------------CCCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDP----PLTIRWLKDG--KPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|+++.|.|.+ .+.|    .+.+.|+++.  ..+.            ...++.... ......|.|.+++.+|+|
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G   88 (240)
T 1moe_A           11 LAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPVEADDVA   88 (240)
T ss_dssp             EEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCE
T ss_pred             EEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cCCeEEEEEcCCChhhCE
Confidence            456789999999999 5777    7899999852  2110            011222221 233568999999999999


Q ss_pred             eEEEEEEccCcc-eeeeEEEEEEeecCC--------CCCeeeeeccceeeeccCcccc----cccceEEe
Q psy11132        177 EYTCVASNTAAQ-ARYSSKLQVKGNLNR--------LPPSYTLVFSQASYMSTSYYSF----EQDSWMID  233 (243)
Q Consensus       177 ~y~C~~~n~~g~-~~~~~~l~v~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~----~~~~W~~~  233 (243)
                      .|.|.|.|..+. ......|.|......        .|+...+..++.+.+.|.....    +.+.|+++
T Consensus        89 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           89 TYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            999999998664 334566777643210        1222345567888999977643    38999997

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.9e-11  Score=75.68  Aligned_cols=78  Identities=13%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             CCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC----------CeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        114 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ...+.+|+.+.|.|.+. +  .+.+.|+++|..+....          ++.+. .++....|.|.+++.+|+|.|+|...
T Consensus        17 d~~v~eG~~a~f~C~vs-~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~-~~g~~~~L~I~~v~~~D~G~Y~~~~~   92 (112)
T 2e6q_A           17 DVQVYDGEDAVFSLDLS-T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE-QKGLQHRLILHAVKHQDSGALVGFSC   92 (112)
T ss_dssp             CEEEETTCEEEEEEEES-S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEEC-CBTTEEEEEEESCCSTTCSEEEEEEE
T ss_pred             CeEEcCCCcEEEEEEEC-C--CCeEEEEECCEECccCcccccccccccEEEEE-eCCcEEEEEECCCCHHHCccEEEEEE
Confidence            36678999999999994 5  67899999999998765          33333 34446789999999999999987554


Q ss_pred             ccCcceeeeEEEEEE
Q psy11132        184 NTAAQARYSSKLQVK  198 (243)
Q Consensus       184 n~~g~~~~~~~l~v~  198 (243)
                      +   ....++.|.|.
T Consensus        93 ~---~~~ssA~L~V~  104 (112)
T 2e6q_A           93 P---GVQDSAALTIQ  104 (112)
T ss_dssp             T---TEEEEEEEEEE
T ss_pred             C---CeeEEEEEEEe
Confidence            4   24567889888

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.32  E-value=3.8e-12  Score=83.41  Aligned_cols=86  Identities=20%  Similarity=0.319  Sum_probs=61.5

Q ss_pred             cCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC----------CeeEEe--eccceeEEEEeec
Q psy11132        103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----------PVNVSD--LDSFSSLLSINSV  170 (243)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~----------~~~~~~--~~~~~~~l~i~~~  170 (243)
                      .+|.+...+. ...+.+|+++.|.|.+ .|.|.+.+.|++++..+....          ......  .....+.|.|.++
T Consensus        20 ~pP~~~~~p~-~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           20 HMAGFVQAPL-SQQRWVGGSVELHCEA-VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             -CCEEEECCC-CEEEETTSCEEEEEEE-ECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCeEEcCCC-CEEEeCCCCEEEEEEE-eeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            4455544332 2566789999999999 689999999999877654321          111111  1123578999999


Q ss_pred             CCCCCeeEEEEEEccCccee
Q psy11132        171 SAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ..+|+|.|.|.|.|..|...
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSSS
T ss_pred             CcccCEEEEEEEEecCCccc
Confidence            99999999999999998764

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.32  E-value=5e-12  Score=89.03  Aligned_cols=119  Identities=15%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--EecC----------------CCCCeeEEee-ccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KPLS----------------PRFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~----------------~~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      ..+.+|+++.|.|.+. +.+  .+.+.|++++  ....                ...+...... ......|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVT-GDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             SEECTTSCEEEEEEEE-SSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEecCCCcEEEEEEEe-cccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            4567899999999994 654  4899999852  2110                0122222221 223468999999999


Q ss_pred             CCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCcccc---c-ccceEEeCCe
Q psy11132        174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSF---E-QDSWMIDNEN  236 (243)
Q Consensus       174 d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~---~-~~~W~~~~~~  236 (243)
                      |+|.|.|.+.|.. .......+.|..... .+|.+..       ..++.+.+.|.....   + .+.|+++|..
T Consensus        89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           89 DTATYYCANWDGD-YWGQGTLVTVSAAKT-TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             GCEEEEEEETTSS-CBCCCEEEEECCCCC-BCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cCEEEEEEEecCc-ccccceEEEeccCCC-CCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            9999999999864 222335666653221 3444432       346788899987655   4 8999999874

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.31  E-value=2.6e-11  Score=86.23  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--Ee---cC--------------CCCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KP---LS--------------PRFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~---~~--------------~~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+. +.+  .+.+.|++..  ..   +.              ...+...... ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B           10 GVVQPGKSLRLSCAAS-GFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEcCCCcEEEEEEec-CcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            4567899999999994 554  4789999843  11   10              0112222221 12356899999999


Q ss_pred             CCCeeEEEEEEccCc------ceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCcccc---c-ccceEE-eC
Q psy11132        173 AHSGEYTCVASNTAA------QARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSF---E-QDSWMI-DN  234 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g------~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~---~-~~~W~~-~~  234 (243)
                      +|+|.|.|.+.+..|      .....+.|.|..... .+|.+..       ..+..+.+.|....+   + .+.|++ ||
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g  167 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSA-SAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNN  167 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCC-BCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTS
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEccCCC-CCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCC
Confidence            999999999998753      112345677763222 3455443       245678899987765   3 799999 88


Q ss_pred             Cee
Q psy11132        235 ENY  237 (243)
Q Consensus       235 ~~~  237 (243)
                      +.+
T Consensus       168 ~~l  170 (223)
T 1dee_B          168 SDI  170 (223)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.31  E-value=1.6e-12  Score=91.46  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             CCCCcEEEEEEeecCCC----CCEEEEEeCCEecCCCCCeeEEee-ccc---eeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        118 PEGARTRVICGVTHGDP----PLTIRWLKDGKPLSPRFPVNVSDL-DSF---SSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..|+++.|.|.+. |.+    .+.+.|++++..+........... ++.   .+.|.|.....+|+|.|+|.|.|..+..
T Consensus        16 ~~G~~v~L~C~~~-g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVV-DVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEE-EECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEe-cccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            6899999999995 543    359999999987654321100011 110   1223333333345999999999987764


Q ss_pred             eeeEEEEEEeecCCCCCeeeeec-------cceeeeccCcccc-c---ccceEEeCCee
Q psy11132        190 RYSSKLQVKGNLNRLPPSYTLVF-------SQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       190 ~~~~~l~v~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      .....+.+. .....+|.+.+.+       +..+.+.|...++ |   .+.|++||..+
T Consensus        95 ~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~  152 (207)
T 1l6x_A           95 PIEKTISKA-KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  152 (207)
T ss_dssp             CEEEEECCC-CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             ceEEEeccC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeec
Confidence            322223210 0112456654332       3457899988764 2   79999999765

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.31  E-value=1.9e-11  Score=87.83  Aligned_cols=121  Identities=18%  Similarity=0.267  Sum_probs=78.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--------------EecC---CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--------------KPLS---PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--------------~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|+++.|.|.+ .+ +.+.+.|++..              ....   ...+............|.|.+++.+|+|.
T Consensus        12 v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           12 IIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            456789999999998 34 77899999821              1110   11222232223345789999999999999


Q ss_pred             EEEEEEccC---cceeeeEEEEEEeec-CCCCCeeeee--------ccceeeeccCcccc-c---ccceEEeCCee
Q psy11132        178 YTCVASNTA---AQARYSSKLQVKGNL-NRLPPSYTLV--------FSQASYMSTSYYSF-E---QDSWMIDNENY  237 (243)
Q Consensus       178 y~C~~~n~~---g~~~~~~~l~v~~~~-~~~~p~~~~~--------~~~~~~~~~~~~~~-~---~~~W~~~~~~~  237 (243)
                      |.|.+.+..   ........+.|...+ ...+|.+.+.        .++.+.+.|....+ |   .+.|+++|..+
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l  165 (240)
T 3q5y_A           90 YFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  165 (240)
T ss_dssp             EEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEEC
Confidence            999998322   223344566666421 2245555432        25678899987763 3   68899998765

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.31  E-value=1.6e-11  Score=87.15  Aligned_cols=121  Identities=12%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--Ee---cC--------------CCCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KP---LS--------------PRFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~---~~--------------~~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+. +.+  .+.+.|++..  ..   +.              ...+...... ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H           10 GLVQPGGSLKLSCAAS-GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             eEecCCCcEEEEEEec-CccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            4567899999999994 654  5789999843  11   10              0112222221 12356899999999


Q ss_pred             CCCeeEEEEEEccCcc---eeeeEEEEEEeecCCCCCeeeee------ccceeeeccCcccc-----cccceEEeCCee
Q psy11132        173 AHSGEYTCVASNTAAQ---ARYSSKLQVKGNLNRLPPSYTLV------FSQASYMSTSYYSF-----EQDSWMIDNENY  237 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g~---~~~~~~l~v~~~~~~~~p~~~~~------~~~~~~~~~~~~~~-----~~~~W~~~~~~~  237 (243)
                      +|+|.|.|.+.+..+.   ....+.|.|..... .+|.+...      .++.+.+.|....+     +.+.|+++|..+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESA-RNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSCC-BCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCCC-CCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            9999999999987553   22345677763221 35555432      45677889987655     379999998764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.30  E-value=5e-12  Score=91.97  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=73.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC-----C--C-----------CCeeEEeeccceeEEEEeecCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS-----P--R-----------FPVNVSDLDSFSSLLSINSVSAAH  174 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~-----~--~-----------~~~~~~~~~~~~~~l~i~~~~~~d  174 (243)
                      ..+.+|++++|.|.+ .+.+.+.+.|++..  ....     .  .           ..............|.|.+++.+|
T Consensus        12 ~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   90 (259)
T 3omz_A           12 VIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND   90 (259)
T ss_dssp             EEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred             eEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence            456789999999999 57788899999831  1100     0  0           000011112234579999999999


Q ss_pred             CeeEEEEEEccCc---ceeeeEEEEEEeec-------------------CCCCCeeeeeccceeeeccCcc---cccccc
Q psy11132        175 SGEYTCVASNTAA---QARYSSKLQVKGNL-------------------NRLPPSYTLVFSQASYMSTSYY---SFEQDS  229 (243)
Q Consensus       175 ~g~y~C~~~n~~g---~~~~~~~l~v~~~~-------------------~~~~p~~~~~~~~~~~~~~~~~---~~~~~~  229 (243)
                      +|.|.|.+.|..+   .......|.|....                   ...|+.+.+..++.+.+.|...   ..+.+.
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~  170 (259)
T 3omz_A           91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIF  170 (259)
T ss_dssp             CEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEE
T ss_pred             CEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEE
Confidence            9999999999766   23344566666421                   1123345667788999999654   335899


Q ss_pred             eEEeC
Q psy11132        230 WMIDN  234 (243)
Q Consensus       230 W~~~~  234 (243)
                      |+|.+
T Consensus       171 W~k~~  175 (259)
T 3omz_A          171 WYKRL  175 (259)
T ss_dssp             EEEEC
T ss_pred             EeeeC
Confidence            99964

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.30  E-value=1.3e-11  Score=90.60  Aligned_cols=118  Identities=15%  Similarity=0.141  Sum_probs=77.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE-----ecC---------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK-----PLS---------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++.     .+.         ...++... .......|.|.+++.+|+|.|.|
T Consensus        22 ~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y~C   99 (276)
T 3auv_A           22 LSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGTDFTLTISSLQPEDFATYYC   99 (276)
T ss_dssp             EECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEe-ccCCeEEEEEccCChhhCEEEEE
Confidence            457889999999999 588889999998542     110         01122222 12335689999999999999999


Q ss_pred             EEEccCcc-eeeeEEEEEEeecC----------------CCCCeeeeeccceeeeccCccc----ccccceEEeC
Q psy11132        181 VASNTAAQ-ARYSSKLQVKGNLN----------------RLPPSYTLVFSQASYMSTSYYS----FEQDSWMIDN  234 (243)
Q Consensus       181 ~~~n~~g~-~~~~~~l~v~~~~~----------------~~~p~~~~~~~~~~~~~~~~~~----~~~~~W~~~~  234 (243)
                      .|.|..+. ......|.|...+.                ..|+...+..++.+.+.|....    .+.+.|++++
T Consensus       100 ~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  174 (276)
T 3auv_A          100 QQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQA  174 (276)
T ss_dssp             EECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             EEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcC
Confidence            99997654 22335566553210                0122334556788889997653    2589999974

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.30  E-value=9.3e-12  Score=89.65  Aligned_cols=118  Identities=18%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ec---C---------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PL---S---------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.+ .+.|.+.+.|+++..  ..   .         ...+.... .......|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C   88 (242)
T 2znx_A           11 LSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGS-GSGTDFTLSINSVETEDFGMYFC   88 (242)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-EETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEe-cCCCEEEEEECCCChHHCEEEEE
Confidence            456789999999999 688889999998531  11   0         01122222 12335689999999999999999


Q ss_pred             EEEccCcce-eeeEEEEEEeecC---------------CCCCeeeeeccceeeeccCcccc----cccceEEeC
Q psy11132        181 VASNTAAQA-RYSSKLQVKGNLN---------------RLPPSYTLVFSQASYMSTSYYSF----EQDSWMIDN  234 (243)
Q Consensus       181 ~~~n~~g~~-~~~~~l~v~~~~~---------------~~~p~~~~~~~~~~~~~~~~~~~----~~~~W~~~~  234 (243)
                      .+.|..+.. ...+.|.|...+.               ..++...+..++.+.+.|.....    +.+.|++++
T Consensus        89 ~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           89 QQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             EECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             eEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            999976532 2345566653211               01122345667888899976543    479999963

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.29  E-value=1e-11  Score=88.38  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCC--EecC-----------------CCCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDG--KPLS-----------------PRFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+.+|+++.|.|.+ .+.+  .+.+.|++..  ..+.                 ...+...... ......|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H           10 GLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             EEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            345789999999999 4665  6789999853  2110                 0112222221 12357899999999


Q ss_pred             CCCeeEEEEEEccCc-----c---eeeeEEEEEEeecCCCCCeeee-------eccceeeeccCcccc-c---ccceEEe
Q psy11132        173 AHSGEYTCVASNTAA-----Q---ARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSF-E---QDSWMID  233 (243)
Q Consensus       173 ~d~g~y~C~~~n~~g-----~---~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~-~---~~~W~~~  233 (243)
                      +|+|.|.|.+.|..|     .   ....+.|.|..... .+|.+..       ..++.+.+.|....+ |   .+.|+++
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  167 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  167 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC-BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTT
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCCC-cCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecC
Confidence            999999999999865     2   12345777764221 2344432       246778899987655 3   8999999


Q ss_pred             CCe
Q psy11132        234 NEN  236 (243)
Q Consensus       234 ~~~  236 (243)
                      |..
T Consensus       168 ~~~  170 (225)
T 1op3_H          168 ALT  170 (225)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            864

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.29  E-value=1.3e-11  Score=88.48  Aligned_cols=118  Identities=15%  Similarity=0.244  Sum_probs=76.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Eec---------------CCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPL---------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~---------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|+++.|.|. . +.|.+.+.|+++.  ...               ....+............|.|.+++.+|+|.
T Consensus        10 ~~v~~G~~v~L~C~-~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A           10 KVAVTGGKVTLSCN-Q-TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             EEEETTCCEEEEEE-E-CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             eEEeCCCEEEEEee-c-CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            44678999999999 3 6788999999852  110               001122222222335689999999999999


Q ss_pred             EEEEEEccCcce-----eeeEEEEEEeecC--------------CCCCeeeeeccceeeeccCcccc--cccceEEeC
Q psy11132        178 YTCVASNTAAQA-----RYSSKLQVKGNLN--------------RLPPSYTLVFSQASYMSTSYYSF--EQDSWMIDN  234 (243)
Q Consensus       178 y~C~~~n~~g~~-----~~~~~l~v~~~~~--------------~~~p~~~~~~~~~~~~~~~~~~~--~~~~W~~~~  234 (243)
                      |.|.|.|..|..     .....+.|.....              ..|..+.+..++.+.+.|.....  +.+.|++++
T Consensus        88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A           88 YFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             EEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             EEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            999999986521     1334566653221              11334556778889999976544  589999975

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.29  E-value=2.2e-10  Score=86.17  Aligned_cols=90  Identities=22%  Similarity=0.323  Sum_probs=63.2

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +...+..+.+.+|++++|.|.+.+..+.+.|.|++++..+.... ....   ...+.|.|.++++.|+|.|+|..   .|
T Consensus         9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~---~~~~~L~i~~v~~~d~G~Y~C~~---~g   81 (325)
T 1n26_A            9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWA---GMGRRLLLRSVQLHDSGNYSCYR---AG   81 (325)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEE---EESSEEEECSCCGGGCEEEEEES---SS
T ss_pred             cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccc-cccc---cccceEEecccchhhCeEeEEEe---CC
Confidence            33334344447999999999985344467999999887652211 1111   22578999999999999999993   56


Q ss_pred             cceeEEEEEEEcCCCcc
Q psy11132         92 EDTQVQRLIVNVPPKIE  108 (243)
Q Consensus        92 ~~~~~~~l~v~~~p~~~  108 (243)
                      .....+.|.|..+|..+
T Consensus        82 ~~~~~~~L~V~~pP~~P   98 (325)
T 1n26_A           82 RPAGTVHLLVDVPPEEP   98 (325)
T ss_dssp             SCSCEEEEEECCCCCCC
T ss_pred             EEeeeEEEEeccCCCCC
Confidence            66777889988776543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.28  E-value=1.8e-11  Score=88.84  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=76.4

Q ss_pred             CCCCCCCcEEEEEEeecCC--CCCEEEEEeCCE--ecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGD--PPLTIRWLKDGK--PLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|+++.|.|.+ .+.  +.+.+.|++...  ...            ...++... .......|.|.+++.+|+|.|
T Consensus        12 ~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           12 VSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGS-KSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             EEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE-EETTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEE-ccCCEEEEEECCCChhhCEEE
Confidence            456789999999999 455  778999998421  110            11122221 223356899999999999999


Q ss_pred             EEEEEccCcc---eeeeEEEEEEeecCC----------------------CCCeeeeeccceeeeccCccc----ccccc
Q psy11132        179 TCVASNTAAQ---ARYSSKLQVKGNLNR----------------------LPPSYTLVFSQASYMSTSYYS----FEQDS  229 (243)
Q Consensus       179 ~C~~~n~~g~---~~~~~~l~v~~~~~~----------------------~~p~~~~~~~~~~~~~~~~~~----~~~~~  229 (243)
                      .|.+.|..+.   ....+.|.|......                      .++...+..++.+.+.|....    .+.+.
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  169 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS  169 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence            9999986542   223456666532210                      112234566888899997754    35899


Q ss_pred             eEEeC
Q psy11132        230 WMIDN  234 (243)
Q Consensus       230 W~~~~  234 (243)
                      |+|++
T Consensus       170 W~r~~  174 (256)
T 3ux9_B          170 WVRQA  174 (256)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99983

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.28  E-value=5.1e-12  Score=98.98  Aligned_cols=92  Identities=18%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee-cCC---CceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL-DNS---AALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~-~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +|.+...+....+.+|++++|.|.+  +.|.+.+.|++++..+ ...   .++...    ..++|.|.+++.+|+|.|+|
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~--~~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C  414 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVL----SDGTLNFTNVTVQDTGMYTC  414 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE--SSTTSEEEEECTTSCEEESSSCCSSEEEC----TTCCEEESSCCSTTCEEEEE
T ss_pred             CCcccccccceeeccCceEEEEeec--CCCCCceEEEeCCCceeeccCCCceEEEc----cCCeEEEccCChhhCEEEEE
Confidence            5677777778889999999999998  3477799999955433 322   122211    24579999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCCC
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      .|.|..|..+.++.+.|..+|.
T Consensus       415 ~a~N~~G~~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          415 MVSNSVGNTTASATLNVTGTHH  436 (440)
T ss_dssp             EEECSSCEEEEEEEEEEC----
T ss_pred             EEEcCCCcEEEEEEEEEecccc
Confidence            9999999999999999887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-13
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-12
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-12
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	9e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	5e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	9e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.003
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	0.001
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	7e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	8e-04
d1kcvh2	101	b.1.1.2 (H:117-217) Immunoglobulin heavy chain gam	8e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	1e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.003
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	8e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	0.002
d1nfde2	104	b.1.1.2 (E:108-215) Immunoglobulin light chain lam	2e-04
d1nfde2	104	b.1.1.2 (E:108-215) Immunoglobulin light chain lam	0.003
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-04
d1mjul2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	3e-04
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	4e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	6e-04
d1hdmb1	98	b.1.1.2 (B:88-185) Class II MHC beta chain, C-term	7e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	7e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	0.003
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.001
d1o0va1	104	b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps	0.001
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.001
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.001
d1ucta1	99	b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD8	0.002
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d3frua1	91	b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 dom	0.002
d1c5cl2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	0.003
d2mhaa1	89	b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {M	0.003
d3b5ha2	80	b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo s	0.003
d1fnga1	101	b.1.1.2 (A:82-182) Class II MHC alpha chain, C-ter	0.003
d1ogae2	127	b.1.1.2 (E:119-245) T-cell antigen receptor {Human	0.003
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.004

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 5e-13
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
           VPP   + + P   +  G R  + C    G PP    W KDG  +            + S
Sbjct: 1   VPPSKPTISVPSS-VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59

Query: 163 -------SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
                    L  + V+A  SGEY C A N    A  S    +
Sbjct: 60  FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (140), Expect = 7e-12
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT------- 60
           VPP     +   ++ +G RA L CS   G  P    W KDG  +  + A           
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
            +D  +  L+ D V+A  SG Y C  +N      + +   ++ 
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 3e-12
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 163
             K+E        +P     +  C    G+P  T+RWLK+GK       +    + +   
Sbjct: 7   TEKMEK---RLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 62

Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            L + SV  +  G YTCV  N      ++  L V
Sbjct: 63  SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 6e-12
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 7   TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           T   K+        +         C    G+   T++WLK+G+       +    V   +
Sbjct: 5   TNTEKMEKRL--HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
             L+++SV     GNY+C V N          L V
Sbjct: 62  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 3e-12
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-- 160
           VPP   +   P      G R  + C    G PP    W KDG  +        +  +S  
Sbjct: 1   VPPSKPTVNIPSS-ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 59

Query: 161 ----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
                +  L  + +SA+ +GEY+C A N       S+ ++++
Sbjct: 60  VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD---- 63
           VPP     N   +  +G RA L CS   G  P    W KDG  +  +   +    +    
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 64  --QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
                  LV D +SA  +G YSC  RN          + +  
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 102 NVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLD 159
           NVPP +++     +     G    ++C    G P  T+ W KDG+P+      +      
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFS 59

Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
             SS L+I +V      EY C+A N A +   S  L+V
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 8   VPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-DQ 64
           VPP +    +    T N+G+  +L+C    G    T+ W KDG  ++N       H+   
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 65  YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
            +S L I +V       Y C   N   E      L V  
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 4e-11
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 10  PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
           P++     ++ +  GE   L   +T G  P+T  W+K  + +  S  + + +  +  S L
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVEN-SENGSKL 58

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            I +    H G Y+  V N +        L V   P
Sbjct: 59  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G    +   VT G  P+T  W+K  K +     + V +     S L+I +    H G Y
Sbjct: 14  AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLTILAARQEHCGCY 71

Query: 179 TCVASNTAAQARYSSKLQVKG 199
           T +  N     +    L V  
Sbjct: 72  TLLVENKLGSRQAQVNLTVVD 92

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            +G+       V  G P     W K+G  +     +     +     L I  V+   S  
Sbjct: 17  GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 75

Query: 178 YTCVASNTAAQARYSSKLQVKG 199
               A N A +    + L V+ 
Sbjct: 76  IMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 7e-09
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            PK+      +T+  G  A     +  G      +W K+G  ++ S  +     +     
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           LVI  V+   S +      N+  E +    L+V
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P         T   G+  +L C   + +   T+ W+       +      +        
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH----PSRWAGMGRR 61

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
           L++ SV    SGNYSC      A       L+V+V
Sbjct: 62  LLLRSVQLHDSGNYSCYRAGRPAGTV---HLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 103 VPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 160
            P +  +       L    G    + C     +   T+ W+                   
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--- 58

Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAA 187
               L + SV    SG Y+C  +   A
Sbjct: 59  -GRRLLLRSVQLHDSGNYSCYRAGRPA 84

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.8 bits (118), Expect = 6e-09
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 9   PPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            PK     PE+ + V  G+  ++ C +T G     + W  + + L              +
Sbjct: 2   APKYE-QKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG------RATVTD 53

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
           S LVI  V     G Y C   N   +      + VN
Sbjct: 54  SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.8 bits (118), Expect = 7e-09
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           +G    + C VT G P   + W  + KP      ++        S L I  V     G Y
Sbjct: 17  QGQDVTIPCKVT-GLPAPNVVWSHNAKP------LSGGRATVTDSGLVIKGVKNGDKGYY 69

Query: 179 TCVASNTAAQARYSSKLQV 197
            C A+N      + + +QV
Sbjct: 70  GCRATNEHGDKYFETLVQV 88

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.9 bits (118), Expect = 8e-09
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           V P  + T  +  +  G  A   C +  G     + W KD   +  S    I + ++ N 
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            L I  V       Y+C   N + E T    L+V
Sbjct: 66  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.8 bits (110), Expect = 9e-08
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG+  R  C V  G P   + W KD  P+       +   +  +  L+I+ V      +Y
Sbjct: 22  EGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 80

Query: 179 TCVASNTAAQARYSSKLQVK 198
           TC A N+  +A  +++L V+
Sbjct: 81  TCKAVNSLGEATCTAELLVE 100

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 9e-09
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
           +  GA    IC      P  T+ W +      P   ++      F+ +L+I +V  + +G
Sbjct: 14  VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNGILTIRNVQPSDAG 67

Query: 177 EYTCVASNTAAQARYSSKLQVK 198
            Y C  SN  A  + ++ L V+
Sbjct: 68  TYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 9   PPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           P  ++      +++  G   + IC+        T+ W +       S          +N 
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS------RAMDFNG 54

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           +L I +V    +G Y CT  NM A D     L V
Sbjct: 55  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 6   STVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALS------ 58
           S   P L    P   +  VG     +C +   D    I+W+K      +           
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLK 59

Query: 59  ------ITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
                 +   D+   +L I +V+   +G Y+C   N +        L V
Sbjct: 60  VLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN------------VSDLDSFSSLL 165
             G     +C V   D    I+W+K  +    ++  +            V+  D    +L
Sbjct: 18  VVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76

Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            I +V+   +GEYTC+A N+   + +S+ L V
Sbjct: 77  YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.5 bits (112), Expect = 4e-08
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 8   VPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
             P +    P       G+  +L C    G+    IKW K             +      
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGS-------QTSKWLSSE 54

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
            +L I +V     G Y C   N+   DT   R+I++
Sbjct: 55  PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 103 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 161
             P I++  FP D     G    + C    G+P   I+W K     + ++        S 
Sbjct: 3   YAPSIKA-KFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKWL-------SS 53

Query: 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
             LL I +V     G Y C A N   +  Y  ++ +
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 4e-08
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 99  LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL 158
           L VN PP I S          G + ++ C +    PP  I W      L        +  
Sbjct: 2   LTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59

Query: 159 DS-----FSSLLSINSVSAA-HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
                    S L+I+++  A     Y C A N+        +L+ +G+    P S
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 114

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
            PP +S     +    GE+  + C I     P  I W      L++  +   T       
Sbjct: 6   GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 67  ----SMLVIDSVS-ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
               S L I ++  A     Y+CT  N    DT++ RL       
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 6/105 (5%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALSITHVDQY 65
            P ++          VG++ +L C +  G     LT+  L+  + L           +  
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE----PAVGEPA 58

Query: 66  NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
                +      H   +SC     +           + P ++++F
Sbjct: 59  EVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQTF 103

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDS 160
            P ++E    P    P G +  + C V  G P   LT+  L+  K L     V       
Sbjct: 3   TPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA--- 58

Query: 161 FSSLLSINSVSAAHSGEYTCVASN 184
                ++      H  +++C    
Sbjct: 59  -EVTTTVLVRRDHHGAQFSCRTEL 81

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 9e-08
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG   R  C    G+P  T+ WL+ G+ LS      V+     S+    + V A+  G Y
Sbjct: 13  EGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS-VQASDEGNY 70

Query: 179 TCVASNTAAQARYSSKLQVK 198
           + V  N+  +      L ++
Sbjct: 71  SVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
           T+  GE A   C    G+   T+ WL+ G+ L  SA   +T     ++   I SV A   
Sbjct: 10  TVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF-EISSVQASDE 67

Query: 80  GNYSCTVRNMVAEDTQVQRLIV 101
           GNYS  V N   +      L +
Sbjct: 68  GNYSVVVENSEGKQEAEFTLTI 89

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVS 156
           V+  P I     P           +   V  G+P   ++W  +G  L+        ++V+
Sbjct: 1   VHFAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
           +   +   L +++ +  ++G+YT +A N   +          G
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN----SAALSITHVD 63
             P ++               +  ++  G+    ++W  +G  L+        + +T+  
Sbjct: 3   FAPTITFLESP---TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 64  QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
           +Y+  L +D+ +  ++G+Y+   +N   +D +         P I+
Sbjct: 59  EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 117 LPEGARTRVIC--GVTHGDPPLTIRWLKDGKPLSPR------FPVNVSDLDSFSSLLSIN 168
           L         C      G P  ++RWL +G  L+        F    ++       L +N
Sbjct: 9   LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 68

Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
             +  ++G YT +A+N   QA  S       N     P
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 20  TLNVGERASLIC--SITKGDIPLTIKWLKDGRYLDNSAALSITH------VDQYNSMLVI 71
            L+        C      G    +++WL +G  L+ ++ +              +  L +
Sbjct: 8   QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67

Query: 72  DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE 119
           +  +  ++GNY+    N   + +                  PF+  PE
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN--------PFEFNPE 107

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSG 176
            +G   ++ C V  G     I+W+KDG  +     + +      +   LS+ SV  + +G
Sbjct: 9   SQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67

Query: 177 EYTCVASNTAAQARYSS-KLQVKG 199
            Y C   +           L V+G
Sbjct: 68  RYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
          +P     T++ G+   L CS+   + P            +            +   L + 
Sbjct: 2  APVK--LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK 59

Query: 73 SVSARHSGNYSCTVRNMVAEDT 94
          SV    +G Y C V +    + 
Sbjct: 60 SVERSDAGRYWCQVEDGGETEI 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             G R  + C V+  D  +      +     P+    +   +    +L I   + A + E
Sbjct: 13  YCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRV-EGKKHILIIEGATKADAAE 71

Query: 178 YTCVASNTAAQARYSSKLQ 196
           Y+ + +   + A+ S  L+
Sbjct: 72  YSVMTTGGQSSAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 9e-07
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 4  IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
          I  T   +      + T   GER  L C +++ D  +      +       +   I   +
Sbjct: 1  IMVTKQLE------DTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRV-E 53

Query: 64 QYNSMLVIDSVSARHSGNYSCTVRN 88
              +L+I+  +   +  YS     
Sbjct: 54 GKKHILIIEGATKADAAEYSVMTTG 78

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (106), Expect = 3e-07
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 20  TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
               GE A ++C +    +P TI W   GR  D      +  +   N+ L I  +     
Sbjct: 12  EFKEGEDAVIVCDVV-SSLPPTIIWKHKGR--DVILKKDVRFIVLSNNYLQIRGIKKTDE 68

Query: 80  GNYSCTVRNMVAEDTQVQRLIVNV 103
           G Y C  R +   +   + + V V
Sbjct: 69  GTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG    ++C V     P TI W   G+ +  +  V    L +      I  +     G Y
Sbjct: 15  EGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ--IRGIKKTDEGTY 71

Query: 179 TCVASNTAAQARYSSKLQV 197
            C     A        +QV
Sbjct: 72  RCEGRILARGEINFKDIQV 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (106), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           EG      C V     P  + W KD + L            +   L +IN V     GEY
Sbjct: 15  EGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL-TINRVKGDDKGEY 72

Query: 179 TCVASNTAAQARYSSKLQVKGN 200
           T  A N+         L V  +
Sbjct: 73  TVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (103), Expect = 9e-07
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
             +  G+ A+  C +     P  + W KD R L  S      +       L I+ V    
Sbjct: 11  TEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-LTINRVKGDD 68

Query: 79  SGNYSCTVRNMVAEDTQVQRLIVNVPP 105
            G Y+   +N      ++  L V    
Sbjct: 69  KGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
             G+  R  C  + G P   +RWL+DG+PL+ +  + V         L  + +    SG 
Sbjct: 14  DIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEV-----SGGELRFSKLVLEDSGM 67

Query: 178 YTCVASNTAAQARYSSKLQVK 198
           Y CVA N       S++L V+
Sbjct: 68  YQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 6/83 (7%)

Query: 19  RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
              ++G      C  + G     ++W       D     S   ++     L    +    
Sbjct: 11  TEADIGSDLRWSCVAS-GKPRPAVRW-----LRDGQPLASQNRIEVSGGELRFSKLVLED 64

Query: 79  SGNYSCTVRNMVAEDTQVQRLIV 101
           SG Y C   N          L V
Sbjct: 65  SGMYQCVAENKHGTVYASAELTV 87

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-07
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 101 VNVPPKIESFAFPFDGLPEGARTRVIC--GVTHGDPPLTIRWLKDGKPLSP---RFPVNV 155
           V  PP++ S       L E       C   V  G+PP T+ WL +G+PL           
Sbjct: 2   VYYPPRVVS-------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 54

Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
            + +     L  N  +  ++G YT +A N    A  +       
Sbjct: 55  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 8   VPPKLSPTNPERTLNVGERASLIC--SITKGDIPLTIKWLKDGRYLDNSA---ALSITHV 62
            PP++       +L   E     C   + +G+ P T+ WL +G+ L  S           
Sbjct: 4   YPPRVV------SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
           +     L+ +  +  ++GNY+   +N +    Q         P
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            +G + R+   +   D    ++WLK+G+ +       + +       L+I+  S A    
Sbjct: 19  SKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 76

Query: 178 YTCVASNTAAQARYSSKLQVK 198
           Y CV             L VK
Sbjct: 77  YQCVVGGEKCSTE----LFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 6e-06
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 9  PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
                  P   ++ G +  L   +   D    +KWLK+G+ +  S +  I         
Sbjct: 6  TAFQKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 69 LVIDSVSARHSGNYSCTVRN 88
          L I   S      Y C V  
Sbjct: 64 LTISQCSLADDAAYQCVVGG 83

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 9e-07
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 117 LPEGARTRVICGVTH-----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 171
           LP      ++C          +    ++W KD KPL           D     L + +V+
Sbjct: 11  LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR----LIVMNVA 66

Query: 172 AAHSGEYTCVASNTAAQARYSSKLQVK 198
             H G YTC AS T    +Y     ++
Sbjct: 67  EKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 20  TLNVGERASLICSITK-----GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV 74
            L V     L+C   +      +    ++W KD + L         H       L++ +V
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN----IHFSGVKDRLIVMNV 65

Query: 75  SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
           + +H GNY+C               ++      E+
Sbjct: 66  AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 1/80 (1%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
                    C +   +   TI W KD                    L          SG 
Sbjct: 15  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW-FVPAKVEDSGH 73

Query: 178 YTCVASNTAAQARYSSKLQV 197
           Y CV  N++   R     + 
Sbjct: 74  YYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-06
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 22  NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN 81
           +  E     C +   +   TI W KD      S     + + Q+   L         SG+
Sbjct: 15  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGH 73

Query: 82  YSCTVRNMVAEDTQVQRLIV 101
           Y C VRN             
Sbjct: 74  YYCVVRNSSYCLRIKISAKF 93

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------ 157
           PP++++       + EG    ++C      P     W K                     
Sbjct: 2   PPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
               S L   N    A  G+Y C  +++    +    L+V+
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRY------LDNSAALSITHV 62
           PP++        +N GE A L+C            W K            + +   ++  
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 63  DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
              + + + +       G Y C   +    D  +  L V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 11/93 (11%), Positives = 19/93 (20%), Gaps = 1/93 (1%)

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
           P               A  R                            V V       S+
Sbjct: 37  PAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET-TKDRSI 95

Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            ++        G YT    N   + + +  ++V
Sbjct: 96  FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 34/126 (26%)

Query: 9   PPKLSPTNPER-----TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-- 61
           PPK+    P R      +  G +  L   I+ GD   T+ W K     + + A       
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 62  --------------------------VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95
                                       +  S+  ++       G Y+ TV+N V ED  
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 122

Query: 96  VQRLIV 101
              + V
Sbjct: 123 NLTVKV 128

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 3/105 (2%)

Query: 9   PPKLSPTNPERTLNVGERASLICSIT--KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           P ++  T     + VG+  ++ C +   +    LT+   +    L            Q  
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 67  SM-LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
           +      +       N+SC     +           + P  +E +
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIY 106

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHG--DPPLTIRWLKDGKPLSPRFPVNVSDLDSF 161
           PP+          +  G    + C V        LT+   +  + L        +     
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 162 SS-LLSINSVSAAHSGEYTCVASNTA 186
           ++   +  +        ++C+A    
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDL 86

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 9e-06
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI--------- 59
           P  +SP N    +++G +  LIC++T G +     W  +G  +D    +           
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 60  --THVDQYNSMLVIDSVSARHSG-NYSCTVRNMVAEDTQVQRLIVNV 103
                    ++L I  + +R     ++C  +N    D    +LI  V
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%)

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--- 161
           P I S A     +  G++ ++IC VT G       W  +G  +    PV   D  S    
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 162 --------SSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 197
                    ++L+I+ + +      +TC A NT        +L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
           C     +PP T RW  +G  L                L+  N V A  +G Y CVA+N  
Sbjct: 29  CRAR-ANPPATYRWKMNGTELKMGPDSRYRL--VAGDLVISNPVKAKDAGSYQCVATNAR 85

Query: 187 AQAR 190
               
Sbjct: 86  GTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
            E+ +L C     + P T +W  +G  L         +      +++ + V A+ +G+Y
Sbjct: 21 AEEKVTLTCRAR-ANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSY 77

Query: 83 SCTVRNMVAEDT 94
           C   N      
Sbjct: 78 QCVATNARGTVV 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-SLLSINSVSAAHSGE 177
            G  T + C     +P     + K+GK ++      ++  +  S   L   +      G 
Sbjct: 17  AGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 75

Query: 178 YTCVASNTAAQAR-YSSKLQV 197
           YTC   N   + + +S KL V
Sbjct: 76  YTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 8  VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-YN 66
          VP  +S    +     G+   + C     +      + K+G+ ++ +    IT  ++   
Sbjct: 5  VPQYVSK---DMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 60

Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDT 94
            L+  +      G Y+C V N V +  
Sbjct: 61 KRLLFKTTLPEDEGVYTCEVDNGVGKPQ 88

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 104 PPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
            P+++    P +   PE ++   +C    G+P   ++ LKDG    P             
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPIGE---------- 50

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
                 +V+    G Y C A +T  +      + V
Sbjct: 51  ----SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 8e-04
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 17/98 (17%)

Query: 9   PPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            P+L   +           + + +C    G+    +K LK                    
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMC-QAWGNPLPELKCLK--------------DGTFPL 46

Query: 67  SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
            +    +V+    G Y C  R+   E T+   + V  P
Sbjct: 47  PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 8e-05
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 6  STVPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQ 64
          ST  P + P  P          +L C +      P+T+ W +           ++     
Sbjct: 2  STTAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGL 61

Query: 65 YN--SMLVIDSVSARHSGNYSCTV 86
          Y   S   + S     S + +C V
Sbjct: 62 YTLSSNTTVAS-GTWPSASVTCLV 84

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (88), Expect = 8e-05
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 8   VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
           + PK+   + +  +  G   +L      G  P        G      A   +       +
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFI-GA-PDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 68  MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            +   S     SGNY   V+N + ED  +  +IV
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
           + PKI + +     +  G    +      G P  T  W       +    + V    S +
Sbjct: 1   LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDA-KSST 57

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
           + +   S   A SG Y     N   +     ++ V+
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 61  HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
            + +    L I +V     G Y+C  R+   ++     L V  P    +
Sbjct: 75  SIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 123

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 148 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
             R  +    +      L I +V  +  G YTC   + + Q   + +L+V+
Sbjct: 66  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 7/99 (7%)

Query: 18  ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-- 75
           E+T   G    L C +        I W K     D +A ++                +  
Sbjct: 11  EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 70

Query: 76  ----ARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIES 109
                     Y CT +N   ++   +    +    K  S
Sbjct: 71  TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 109

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV------NVSDLDSFSSLLSINSVSA 172
           EG   ++ C + +  P   I W K      P   V        +  D       +     
Sbjct: 16  EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 75

Query: 173 AHSGEYTCVASNTAAQAR 190
           +   +Y C A N A    
Sbjct: 76  SDIYKYVCTAKNAAVDEE 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSG 176
            G      C    G      R    G  +       +       F +  ++ + +   +G
Sbjct: 15  AGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 73

Query: 177 EYTCVASNTAAQARYSS-KLQVK 198
           +Y C+          +  +L VK
Sbjct: 74  KYRCMIRTEGGVGISNYAELVVK 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 8e-04
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 20  TLNVGERASLICSITKGDIPLTI-KWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
            +N G+ A+  CS     +                   + +T   ++ +   + + + R 
Sbjct: 12  EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRD 71

Query: 79  SGNYSCTVRNMVAEDT-QVQRLIV 101
           +G Y C +R            L+V
Sbjct: 72  AGKYRCMIRTEGGVGISNYAELVV 95

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
            G        +   +P +  +W   G+PL+      + +      L  +++     +GE 
Sbjct: 15  VGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL-ILHNCQLGMTGEV 71

Query: 179 TCVASNTAAQARYSSKLQVK 198
           +  A+N  + A     L+VK
Sbjct: 72  SFQAANAKSAAN----LKVK 87

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 20/92 (21%), Gaps = 12/92 (13%)

Query: 118 PEGARTRVICGVTHGDPPL---TIRWLKDGKPLSPRFPVNVSDL--------DSFSSLLS 166
             G           G   L    ++W K               L          +   L 
Sbjct: 17  TVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75

Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
           I     A +G Y C  S        +  L V 
Sbjct: 76  ITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 10/92 (10%)

Query: 20  TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHV--------DQYNSML 69
            + VG   +    +    +     +KW K      +S       +          Y   L
Sbjct: 15  EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFEL 74

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
            I       +G Y C V      D     L V
Sbjct: 75  HITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF----PVNVS 156
              PK+  F    + L     T ++C V    P   T+ W  +G  ++       P    
Sbjct: 3   KSSPKVTVFPPSPEELRTNKAT-LVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG 61

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVAS 183
                SS LS+ +         +C  +
Sbjct: 62  QNYMTSSYLSLTADQWKSHNRVSCQVT 88

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 6  STVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVD- 63
              PK++   P        +A+L+C +        T+ W  +G  +++    +      
Sbjct: 2  PKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG 61

Query: 64 ---QYNSMLVIDSVSARHSGNYSCTV 86
               +S L + +   +     SC V
Sbjct: 62 QNYMTSSYLSLTADQWKSHNRVSCQV 87

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSINSVSAA 173
             G    + C V +      + W K       +          + +    +L    V   
Sbjct: 16  LAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN 75

Query: 174 HSGEYTCVASNTAAQARYSS-KLQVK 198
            +G Y C A+  +      S  L V 
Sbjct: 76  DNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN----SMLVIDS 73
          E ++  G+   L C +        + W K             T   +       +L  + 
Sbjct: 12 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEP 71

Query: 74 VSARHSGNYSCTVRN 88
          V    +G+Y C+   
Sbjct: 72 VLPNDNGSYRCSANF 86

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 6  STVPPKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQ 64
          +   P +S   P         AS++C +       + +KW  DG    N    S T  D 
Sbjct: 2  ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS 61

Query: 65 YN------SMLVIDSVSARHSGNYSCTV 86
           +      S L +         +Y+C  
Sbjct: 62 KDSTYSMSSTLTLTKDEYERHNSYTCEA 89

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSD 157
              P +  F    + L     T V          +T+ W  DG P++       P   S+
Sbjct: 3   KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSN 62

Query: 158 -LDSFSSLLSINSVSAAHSGEYTCVAS 183
                SS L++ + +      Y+C  +
Sbjct: 63  NKYMASSYLTLTARAWERHSSYSCQVT 89

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
            E   T + C +   D  +   W KDGK  + +        D  S  L      A+  G 
Sbjct: 15  RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--LVFLRPQASDEGH 72

Query: 178 YTCVASNTAAQARYSSKLQVK 198
           Y C A   A  A  S  +  +
Sbjct: 73  YQCFAETPAGVAS-SRVISFR 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 9  PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P L     E          L C I   D  +   W KDG+  +     +    D+ +  
Sbjct: 2  YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-- 59

Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDT 94
          LV     A   G+Y C         +
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVAS 85

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 20  TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSI--------THVDQYNSML 69
           T+ VGE  + I  +   D+    TIKW K       S A            H   Y   +
Sbjct: 11  TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEM 70

Query: 70  VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
            I       +GNY C V      D+    L V+     
Sbjct: 71  QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 7  TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSIT--H 61
          T PP +         N  E   L C +      ++  TI W K+G+ + +S+A      +
Sbjct: 1  TRPPSVQVA-KTTPFNTREPVMLACYVWGFYPAEV--TITWRKNGKLVMHSSAHKTAQPN 57

Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVR 87
           D     L   +++  +   Y+C V 
Sbjct: 58 GDWTYQTLSHLALTPSYGDTYTCVVE 83

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 7e-04
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
           P ++ P  P   + +G    L C +   D   +++W      L           D   S+
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQSDTGRSV 56

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
           L + + S   +G   C             +L+V
Sbjct: 57  LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
           V P       P   +  GA  ++ C +   D   +++W      L           D+  
Sbjct: 1   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS------DTGR 54

Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
           S+L++ + S + +G   CV S      +++ +L V
Sbjct: 55  SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 7  TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVDQ 64
           + P       +  ++VGE    +C +        I W        +     +S+   D 
Sbjct: 4  DIVP------SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 57

Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95
           +S L I + +   +G Y C V       ++
Sbjct: 58 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 88

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 103 VPPKIESFAFPFDGLPEGART-RVICGVTHGDPP-LTIRWLKDGKPLS----PRFPVNVS 156
            PP ++      DG      T +++C V+   P  + I WL+DG+ +             
Sbjct: 3   TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG 62

Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVAS 183
           +L S  S L+++         YTC  +
Sbjct: 63  ELASTQSELTLSQKHWLSDRTYTCQVT 89

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
             EG    + C      P + + + ++GK                    SI   + +HSG
Sbjct: 12  FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF---------SRSDPNFSIPQANHSHSG 62

Query: 177 EYTCVASNTAAQARYSS-KLQVKG 199
           +Y C  +            + V+ 
Sbjct: 63  DYHCTGNIGYTLYSSKPVTITVQA 86

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 8  VPPKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQYN 66
            P++            ++ +L C I       ++++WL +   L ++   +        
Sbjct: 3  AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKG 62

Query: 67 ------SMLVIDSVSARHSGNYSCTV 86
                S L +          + C  
Sbjct: 63 SGFFVFSRLEVTRAEWEQKDEFICRA 88

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
           P  A  ++ C       P+TI W +    +    P               N      S  
Sbjct: 14  PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL----------NVTGVTQSTM 63

Query: 178 YTCVASNTAAQARYSS-KLQVK 198
           ++C A N    A   +  + ++
Sbjct: 64  FSCEAHNLKGLASSRTATVHLQ 85

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
           P     A     +P     ++ C           + +             +   +     
Sbjct: 6   PMPFISAKSSPVIPLDGSVKIQCQAIREA--YLTQLMIIKNSTYREIGRRLKFWNETDPE 63

Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
             I+ + A  +G Y C       + RYS  L++
Sbjct: 64  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL 96

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 9   PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
            P L    P  +++VG+   L C +    +     W+        +     +       +
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV--MKSGGLPSLGL 58

Query: 69  LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
            + +  S  +  N +C   N V       ++ V+
Sbjct: 59  TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 8  VPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
           PP +              + L C+        L  ++L++G    +    +  + D   
Sbjct: 2  EPPSMRLKARPGN---SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSF 58

Query: 67 SMLVIDSVSARHSGNYSCTV 86
              +  V      +Y C V
Sbjct: 59 HAWSLLEVKRGDEHHYQCQV 78

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 7/88 (7%)

Query: 6  STVPPKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQ 64
          +   P +    P         AS++C +         ++W  D      ++  S+T  D 
Sbjct: 2  TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDS 61

Query: 65 YN------SMLVIDSVSARHSGNYSCTV 86
           +      S L +          Y+C V
Sbjct: 62 KDSTYSLSSTLTLSKADYEKHKVYACEV 89

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 7  TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVD 63
          T  PK   T+  R     ++ +L C        DI  T+ W  +G  L     L  T   
Sbjct: 1  TDSPKAHVTHHSRP---EDKVTLRCWALGFYPADI--TLTWQLNGEELIQDMELVETRPA 55

Query: 64 QYNSMLVIDS--VSARHSGNYSCTV 86
             +     S  V       Y+C V
Sbjct: 56 GDGTFQKWASVVVPLGKEQYYTCHV 80

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 120 GARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
           G++  + C +      +T  RWLK G  L         +             S    GEY
Sbjct: 12  GSKILLTCSLNDSATEVTGHRWLKGGVVLK--------EDALPGQKTEFKVDSDDQWGEY 63

Query: 179 TCV 181
           +CV
Sbjct: 64  SCV 66

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN--VSDL 158
           NV P++         +  G    +IC +    PP + + WL++G+P++        +   
Sbjct: 3   NVAPEV--TVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRD 60

Query: 159 DSFSSLLSINSVSAAHSGEYTCV 181
           D         +   +    Y C 
Sbjct: 61  DHLFRKFHYLTFLPSTDDFYDCE 83

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL----------SPRF 151
            PP++  F      +    +  ++C  T   P  + + W  +GK +              
Sbjct: 3   FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 62

Query: 152 PVNVSDLDSFSSLLSINSVSAAHSGE-YTCVAS 183
           P       S SS L +++    +    + C   
Sbjct: 63  PALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 95

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 146 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
            L  R     +DL S  + +++ ++  +  G Y C        A     L V
Sbjct: 71  DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.78
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.77
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.72
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.7
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.7
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.69
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.69
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.69
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.67
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.66
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.66
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.66
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.66
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.66
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.66
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.66
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.65
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.65
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.65
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.63
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.63
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.63
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.63
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.62
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.62
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.62
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.61
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d2avga1	110	Cardiac myosin binding protein C, different domain	99.6
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.6
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.6
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.6
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.6
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.59
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.59
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.59
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.59
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.59
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.59
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.59
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.58
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.58
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.58
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.57
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.56
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.56
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.56
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.55
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.55
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.55
d2avga1	110	Cardiac myosin binding protein C, different domain	99.55
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.54
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.54
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.52
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.52
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.52
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.51
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.51
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.5
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.5
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.49
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.46
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.45
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.43
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.43
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.42
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.42
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.41
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.39
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.37
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.33
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.31
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.27
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.27
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.19
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.18
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.06
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	99.04
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.02
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.97
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.96
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.94
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.92
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.91
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.9
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.9
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.84
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.81
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.81
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.81
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.79
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.77
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.77
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.76
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.76
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.75
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.74
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.73
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.73
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.73
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.72
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.69
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.69
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.68
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.67
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.66
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.66
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.66
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.66
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.66
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.66
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.65
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.65
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.65
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.65
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.64
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.64
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.64
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.64
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.63
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.62
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.62
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.62
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.61
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.61
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.6
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.58
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.58
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.58
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.57
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.56
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.56
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.56
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.55
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.55
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.54
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.54
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.54
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.54
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.54
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.54
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.53
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.53
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.53
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.53
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.52
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.52
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.51
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.51
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.5
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.5
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.49
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.49
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.48
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.48
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.48
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.48
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.48
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.47
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.47
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.47
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.47
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.46
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.46
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.46
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.45
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.44
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.44
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.44
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.44
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.43
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.43
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.43
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.43
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.43
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.43
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.42
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.42
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.42
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.42
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.42
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.41
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.4
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.4
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.4
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.39
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.39
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.39
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.39
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.38
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.38
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.38
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.38
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.37
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.37
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.36
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.36
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.36
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.35
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.35
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.34
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.34
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.33
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.33
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.33
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.33
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.32
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.32
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.31
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.31
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.31
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.3
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.3
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.29
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.28
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.28
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.28
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.27
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.27
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.25
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.25
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.25
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.24
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.24
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.24
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.23
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.23
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.23
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.23
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.23
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.22
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.21
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.21
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.21
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.21
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.19
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.19
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.19
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.18
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.18
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.18
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.17
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.15
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.15
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.15
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.15
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.14
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.14
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.13
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.12
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.11
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.11
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.1
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.1
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.09
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.09
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.08
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.08
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.08
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.07
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.07
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.07
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.07
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.06
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.06
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.05
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.04
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.04
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.03
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.03
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.02
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.02
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.01
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.01
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.01
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.01
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.0
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.0
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.99
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.97
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.95
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.94
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.94
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.93
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.92
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.89
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.89
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.89
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.88
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.88
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.87
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.85
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.85
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.84
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.83
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.79
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.79
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.78
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.78
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.77
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.75
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.75
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.74
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.72
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.7
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.7
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.7
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.69
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.69
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.67
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.67
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.66
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.66
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.65
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.65
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.65
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.64
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.63
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.63
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.62
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.62
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.61
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.58
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.56
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.55
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.55
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.53
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.53
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.52
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.51
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.48
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.47
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.45
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.45
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.44
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.43
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.42
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.37
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.37
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.35
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.34
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.31
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.29
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.27
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.23
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.23
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.21
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	97.21
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.18
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.15
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.14
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.13
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.12
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.11
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.04
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.04
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.04
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.03
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.03
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.0
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7e-19  Score=107.75  Aligned_cols=97  Identities=23%  Similarity=0.389  Sum_probs=83.5

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.... ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSE-NGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEE-SSSSCEEEEEESSSBCCCSSSEEEEECS-SEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEE-ecCCCEEEEEeCceeeccCCcEEEEEec-ceeEEEEeeCCcccCEEEEEEEEEC
Confidence            5566667788899999999999995 8888899999999999888877765543 3578999999999999999999999


Q ss_pred             CCcceeEEEEEEEcCCCcc
Q psy11132         90 VAEDTQVQRLIVNVPPKIE  108 (243)
Q Consensus        90 ~~~~~~~~~l~v~~~p~~~  108 (243)
                      .|..+..+.|.|.+.|..+
T Consensus        79 ~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          79 LGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             SCEEECCEEEEEECSCSCC
T ss_pred             CCEEEEEEEEEEEecCCCc
Confidence            9999999999999877543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.78  E-value=8.8e-19  Score=106.72  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=81.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....+............|.|.+++..|.|.|+|.+.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~-g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEE-EecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            467777777888999999999999995 8888999999999999887776555444445789999999999999999999


Q ss_pred             eCCCcceeEEEEEEEc
Q psy11132         88 NMVAEDTQVQRLIVNV  103 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~  103 (243)
                      |..|..+..+.|.|..
T Consensus        82 N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCcEEEEEEEEEEEE
Confidence            9999988888888864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.77  E-value=8.1e-19  Score=107.69  Aligned_cols=94  Identities=24%  Similarity=0.393  Sum_probs=82.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.|...+.+..+.+|+++.|.|.+. +.|.+.+.|+++|..+....++.+........+|.|.+++..|.|.|+|.+.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEE-eccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            467777777888899999999999995 7888899999999999988877766555556789999999999999999999


Q ss_pred             eCCCcceeEEEEEEE
Q psy11132         88 NMVAEDTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~  102 (243)
                      |..|..+.++.|.|.
T Consensus        86 N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGEATCTAELLVE  100 (102)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999998888888875

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=9e-19  Score=106.46  Aligned_cols=95  Identities=20%  Similarity=0.328  Sum_probs=79.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      .|.|...+.+..+.+|+++.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++..|+|.|+|.|.|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEE-CSSCCEEEEEETTEECCSBTTBBCCCST-TEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEE-EcCCCEEEEEEeeeccceeeEEEEEecC-CeeEEEeCCCceecCEEEEEEEEE
Confidence            36777777888899999999999995 8888899999999999877666544322 356899999999999999999999


Q ss_pred             CCCcceeEEEEEEEcCC
Q psy11132         89 MVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        89 ~~~~~~~~~~l~v~~~p  105 (243)
                      ..|..+..+.|.|...+
T Consensus        79 ~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          79 SYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             TTEEEEEEECCEEECSC
T ss_pred             CCCEEEEEEEEEEeecC
Confidence            99988888888887544

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=1.8e-18  Score=103.07  Aligned_cols=87  Identities=20%  Similarity=0.399  Sum_probs=75.9

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |.|...+.+..+.+|+++.|.|.+. |.|.+.++|+++|..+....++.+.     ...|.|.+++.+|+|.|+|.+.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVS-----GGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEE-EESCCEEEEEETTEECCCCSSEEEE-----TTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEE-EEcCCEEEEEEeeccccccceeeee-----eeeEEEEeecccCCEEEEEEEEeC
Confidence            5666677788899999999999995 8888899999999999887776543     567999999999999999999999


Q ss_pred             CCcceeEEEEEEE
Q psy11132         90 VAEDTQVQRLIVN  102 (243)
Q Consensus        90 ~~~~~~~~~l~v~  102 (243)
                      .|.....+.|.|.
T Consensus        76 ~G~~~~~~~l~V~   88 (89)
T d1cs6a4          76 HGTVYASAELTVQ   88 (89)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9988888888875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=1.8e-18  Score=104.24  Aligned_cols=91  Identities=21%  Similarity=0.293  Sum_probs=79.3

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+.....+..+.+|+++.|.|.+. |.|.+.+.|++++..+....+....... ....|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS-STTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEE-CCSSCEEEEECSSSSCBCSTTSEEEEET-TEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEE-EecCCeEEEEeeeeeceeeeeeeecccc-cceeeccccccccccEEEEEEEEE
Confidence            68888778889999999999999995 8899999999999998887776655443 357899999999999999999999


Q ss_pred             CCCcceeEEEEEE
Q psy11132         89 MVAEDTQVQRLIV  101 (243)
Q Consensus        89 ~~~~~~~~~~l~v  101 (243)
                      ..|..+..+.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T d1wiua_          80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999888888876

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=6.8e-18  Score=102.71  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        14 ~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   92 (98)
T d1g1ca_          14 QTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF   92 (98)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEE
Confidence            557789999999999 5999999999999999988776655554555678999999999999999999999999998999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        93 L~V~   96 (98)
T d1g1ca_          93 LLVQ   96 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2e-17  Score=101.16  Aligned_cols=85  Identities=22%  Similarity=0.330  Sum_probs=73.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus        10 ~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   87 (101)
T d2cqva1          10 QKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN   87 (101)
T ss_dssp             EEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEE-CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred             EEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEE-ecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence            557789999999999 599999999999999998777665543 334578999999999999999999999999999999


Q ss_pred             EEEEeec
Q psy11132        195 LQVKGNL  201 (243)
Q Consensus       195 l~v~~~~  201 (243)
                      |.|.+.+
T Consensus        88 l~V~~~P   94 (101)
T d2cqva1          88 LTVVDKP   94 (101)
T ss_dssp             EEEECSC
T ss_pred             EEEEecC
Confidence            9998543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=9.4e-18  Score=102.85  Aligned_cols=83  Identities=27%  Similarity=0.456  Sum_probs=73.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|+++|..+.....+...........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        18 ~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   96 (102)
T d1fhga_          18 MEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE   96 (102)
T ss_dssp             EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEE
Confidence            556789999999999 5899999999999999998777766555555678999999999999999999999999999988


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        97 L~V~  100 (102)
T d1fhga_          97 LLVE  100 (102)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.72  E-value=5.2e-18  Score=101.72  Aligned_cols=89  Identities=30%  Similarity=0.470  Sum_probs=74.8

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      |...|.+..+.+|+++.|.|.+. +.|.+.+.|+++|..+....+..+.... ..+.|.|.+++.+|+|.|+|.+.|..|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECC-CSSCCCCEEESSSSTTCSSSSCEEEECS-SEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEE-EEeCCeEEEEEeecccccccceeeeeec-ceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            34456778899999999999994 8888899999999999877766554433 367899999999999999999999999


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                      ..+..+.|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1tnna_          80 KQEAEFTLTIQ   90 (91)
T ss_dssp             BCCEEEEEECC
T ss_pred             EEEEEEEEEEE
Confidence            98888887764

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=1.9e-17  Score=98.55  Aligned_cols=78  Identities=32%  Similarity=0.564  Sum_probs=68.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+++.|.|.+ .|.|.|.+.|+++|..+.........     .+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        11 ~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   84 (89)
T d1cs6a4          11 TEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQNRIEVS-----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAE   84 (89)
T ss_dssp             EEEETTCCEEEECEE-EEESCCEEEEEETTEECCCCSSEEEE-----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEEE-EEEcCCEEEEEEeeccccccceeeee-----eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEE
Confidence            556789999999999 59999999999999999877655442     357999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        85 l~V~   88 (89)
T d1cs6a4          85 LTVQ   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.70  E-value=3.6e-17  Score=97.42  Aligned_cols=86  Identities=22%  Similarity=0.380  Sum_probs=70.0

Q ss_pred             CCCccCCCC-CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNP-ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+...+. ...+.+|+++.|.|.+. |.|.+.+.|++++..+... +..+.     ...|.|.+++..|+|.|+|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~i~~~-~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG-RATVT-----DSGLVIKGVKNGDKGYYGCRAT   74 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEE-EESCCCCEEEETTEECCSS-SEEEE-----TTEEEESSCCSTTCEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEE-EeCCCEEEEEeCCccCccc-cEEEe-----eeeEEECCCChhhCEEEEEEEE
Confidence            466665544 45688999999999995 8888899999999998654 33322     4569999999999999999999


Q ss_pred             eCCCcceeEEEEEE
Q psy11132         88 NMVAEDTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~~~~~~~l~v  101 (243)
                      |..|.....+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1biha4          75 NEHGDKYFETLVQV   88 (89)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998887777776

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.70  E-value=3.6e-17  Score=99.22  Aligned_cols=82  Identities=26%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.....+... .......|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        11 ~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~l~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   88 (97)
T d1koaa1          11 TEVGEGQSANFYCRV-IASSPPVVTWHKDDRELKQSVKYMKR-YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF   88 (97)
T ss_dssp             CEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCSBTTBBCC-CSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEEC
T ss_pred             EEEeCCCcEEEEEEE-EEcCCCEEEEEEeeeccceeeEEEEE-ecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEE
Confidence            557789999999999 69999999999999999876554433 2344678999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        89 l~V~   92 (97)
T d1koaa1          89 LNVT   92 (97)
T ss_dssp             CEEE
T ss_pred             EEEe
Confidence            8887

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=1.5e-17  Score=99.58  Aligned_cols=87  Identities=23%  Similarity=0.375  Sum_probs=70.2

Q ss_pred             cCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .||.+... +....+.+|+.++|.|.+. +.|.+.+.|++++........       .....|.|.+++.+|+|.|+|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a   74 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKWL-------SSEPLLHIQNVDFEDEGTYECEA   74 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEE-EESCCEEEEEECCSCCSCCCS-------BSSSEEEECSCCGGGCEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEE-EccCCEEEEEecccccceEee-------eeeeEEEeCCCCccCCEEEEEEE
Confidence            45666654 6788899999999999995 888889999997754433211       12568999999999999999999


Q ss_pred             EeCCCcceeEEEEEEE
Q psy11132         87 RNMVAEDTQVQRLIVN  102 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~  102 (243)
                      .|..|.....+.|.|.
T Consensus        75 ~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          75 ENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999998888888875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=3.5e-17  Score=98.47  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=70.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+++.|.|.+ .|.|.|.+.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus        12 ~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   89 (93)
T d1wiua_          12 IKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDA-KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE   89 (93)
T ss_dssp             EEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEE-ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeecc-cccceeeccccccccccEEEEEEEEECCCEEEEEEE
Confidence            567899999999999 599999999999999887766554443 334678999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|+
T Consensus        90 l~V~   93 (93)
T d1wiua_          90 VIVQ   93 (93)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8763

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=2.4e-17  Score=99.95  Aligned_cols=81  Identities=27%  Similarity=0.497  Sum_probs=67.2

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  195 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l  195 (243)
                      .+..|+++.|.|.+ .|.|.|.+.|+++|..+...............+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        16 ~v~~G~~v~l~C~~-~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          16 AVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EECCCCcEEEEEEE-eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46789999999999 68999999999999998765443322223335789999999999999999999999998888888


Q ss_pred             EE
Q psy11132        196 QV  197 (243)
Q Consensus       196 ~v  197 (243)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8e-17  Score=95.83  Aligned_cols=88  Identities=19%  Similarity=0.314  Sum_probs=68.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      |+.+...+....+.+|+++.|.|.+..+.|.+.+.|++.+.++...      ......+.|.|.+++.+|+|.|+|.|.|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV------QSDTGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE------EEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee------eccCceeeEEcCccChhhCCcEEEEEEe
Confidence            3445544556778899999999998557888899999987665321      1122367899999999999999999999


Q ss_pred             CCCcceeEEEEEEE
Q psy11132         89 MVAEDTQVQRLIVN  102 (243)
Q Consensus        89 ~~~~~~~~~~l~v~  102 (243)
                      ..+..+.++.|.|.
T Consensus        77 ~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          77 GGRTFQHTVQLLVY   90 (90)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEC
Confidence            99988888888763

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.4e-17  Score=96.57  Aligned_cols=80  Identities=26%  Similarity=0.437  Sum_probs=66.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      +....+.+|+++.|.|.+..+.|.+.+.|++++..+......      .....|+|.+++.+|+|.|+|.|.|..|..+.
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM------DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE------EETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE------eeceEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            456778999999999999767788899999998877654321      12568999999999999999999999998888


Q ss_pred             EEEEEE
Q psy11132         96 VQRLIV  101 (243)
Q Consensus        96 ~~~l~v  101 (243)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887776

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.68  E-value=3.1e-17  Score=99.42  Aligned_cols=82  Identities=23%  Similarity=0.428  Sum_probs=68.3

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ..+.+|+.+.|.|.+. |.|.+.+.|+++|..+....+..........++|.|.+++.+|+|.|+|.+.|..|..+..+.
T Consensus        15 ~~v~~G~~v~l~C~~~-g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEe-EECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4578899999999995 888889999999999976554433333334678999999999999999999999998888888


Q ss_pred             EEE
Q psy11132         99 LIV  101 (243)
Q Consensus        99 l~v  101 (243)
                      |.|
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=2.6e-17  Score=98.07  Aligned_cols=77  Identities=29%  Similarity=0.468  Sum_probs=64.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+.... ....     ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        13 ~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~~~~-~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1biha4          13 IVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGR-ATVT-----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL   85 (89)
T ss_dssp             EEECTTSCEEEECEE-EEESCCCCEEEETTEECCSSS-EEEE-----TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCcccc-EEEe-----eeeEEECCCChhhCEEEEEEEEECCCEEEEEEE
Confidence            456789999999999 699999999999999986542 2221     346999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|+
T Consensus        86 l~V~   89 (89)
T d1biha4          86 VQVN   89 (89)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8763

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.68  E-value=6.6e-17  Score=95.87  Aligned_cols=78  Identities=21%  Similarity=0.336  Sum_probs=63.1

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQV   96 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~   96 (243)
                      ...+.+|++++|.|.+..+.|.+.+.|+|++..+.....         ...|.|.+++.+|+|.|+|.+.|..+. .+..
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~---------~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~   79 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS---------DPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP   79 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS---------CCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc---------ccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence            445889999999999865667789999999987653221         567999999999999999999998876 4567


Q ss_pred             EEEEEEcC
Q psy11132         97 QRLIVNVP  104 (243)
Q Consensus        97 ~~l~v~~~  104 (243)
                      +.|.|+.|
T Consensus        80 v~l~V~~P   87 (88)
T d2fcba2          80 VTITVQAP   87 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            78888654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.8e-17  Score=99.29  Aligned_cols=95  Identities=26%  Similarity=0.437  Sum_probs=73.1

Q ss_pred             cCCCccCCCC--CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEE-EEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNP--ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+...+.  +.++.+|+++.|.|.+. |.|.+.+.|+++|..+........ .......+.|.|.+++.+|+|.|+|
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC   80 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEE-EESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEE-EecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence            4677765443  34678899999999995 888889999999998865432211 1112235789999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEc
Q psy11132         85 TVRNMVAEDTQVQRLIVNV  103 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~  103 (243)
                      .|.|..|..+..+.|.|..
T Consensus        81 ~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          81 IAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCCEEEEEEEEEEEE
Confidence            9999999988888888864

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=95.14  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=66.0

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-cee
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQ   95 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~   95 (243)
                      ....+.+|++++|.|.+..+.++..+.|||+|..+.....         ...|.|.+++.+|+|.|.|.+.|..+. .+.
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~---------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~   78 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDYESE   78 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC---------SSEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc---------cceEEEeeeeeecCcEEEEEEEeCCCCeEee
Confidence            3455889999999999865556679999999988865332         467999999999999999999997765 467


Q ss_pred             EEEEEEEcCCC
Q psy11132         96 VQRLIVNVPPK  106 (243)
Q Consensus        96 ~~~l~v~~~p~  106 (243)
                      .+.|.|.++|+
T Consensus        79 ~v~i~V~~~Pr   89 (89)
T d1f2qa2          79 PLNITVIKAPR   89 (89)
T ss_dssp             CEEEEEECSCC
T ss_pred             eEEEEEEeCCC
Confidence            78899988764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.2e-16  Score=95.37  Aligned_cols=78  Identities=26%  Similarity=0.505  Sum_probs=64.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+..+.|.+.+.|++++..+.......      ..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus        12 ~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1gl4b_          12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   85 (89)
T ss_dssp             EEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe------eceEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4567899999999996678889999999988776543211      1467999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|+
T Consensus        86 l~V~   89 (89)
T d1gl4b_          86 LHVQ   89 (89)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8763

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-15  Score=93.20  Aligned_cols=98  Identities=15%  Similarity=0.270  Sum_probs=78.0

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCee
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~   81 (243)
                      |..||.+.....   ...++...|.|.+. |.|.+.+.|+++|..+....+.......    ...+.|.|.+++..|+|.
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~-G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEE-CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEE-EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            356888765432   34678889999995 9999999999999999876655443322    224689999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEEEcCCCc
Q psy11132         82 YSCTVRNMVAEDTQVQRLIVNVPPKI  107 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v~~~p~~  107 (243)
                      |+|.|.|..|..+..+.|.|...|.+
T Consensus        77 Y~C~a~N~~G~~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          77 YTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             EEEEEeccCCEEEEEEEEEEEeCCCC
Confidence            99999999999999999988877754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=94.99  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-cee
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQ   95 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~   95 (243)
                      +...+.+|++++|.|.+..+.|.+.+.|+|||..+....         ....|.|.+++.+|+|.|+|.+.|..+. .+.
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~---------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~   80 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH---------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE   80 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE---------ECCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec---------cccccEECccceeccceEEEEEEeCCCCeEEe
Confidence            345588999999999986567777999999998764321         1557899999999999999999998775 356


Q ss_pred             EEEEEEEc
Q psy11132         96 VQRLIVNV  103 (243)
Q Consensus        96 ~~~l~v~~  103 (243)
                      .+.|.|.+
T Consensus        81 ~v~itV~E   88 (89)
T d1fnla2          81 TVNITITQ   88 (89)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEe
Confidence            67787764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.7e-16  Score=95.12  Aligned_cols=89  Identities=20%  Similarity=0.421  Sum_probs=70.2

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      +.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+............  .++|.|.+++..|+|.|+|.+.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~-g~p~p~v~W~~~~~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEE-CSSCCEEEEEETTEEGGGGCCTTEEECT--TSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEe-ecCCCeEEEEEcCcccccccceeeeeee--eeeEEECCCCHHhCEEEEEEEEEC
Confidence            3455567788899999999999995 8888999999999988765544333322  456999999999999999999998


Q ss_pred             CCcceeEEEEEE
Q psy11132         90 VAEDTQVQRLIV  101 (243)
Q Consensus        90 ~~~~~~~~~l~v  101 (243)
                      .+.......+.|
T Consensus        79 ~~~~~~~~~i~V   90 (92)
T d1epfa2          79 ARGEINFKDIQV   90 (92)
T ss_dssp             GGTEEEEEEEEE
T ss_pred             cCCEEEEEEEEE
Confidence            776655555555

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=7.5e-17  Score=96.56  Aligned_cols=82  Identities=28%  Similarity=0.520  Sum_probs=69.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .|.|.|.+.|+++|..+.......... ....+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         9 ~~v~~G~~~~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1tnna_           9 MTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTT-TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT   86 (91)
T ss_dssp             EECSSSSCCCEEEEC-CCSSCCCCEEESSSSTTCSSSSCEEEE-CSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred             EEEeCCCcEEEEEEE-EEEeCCeEEEEEeecccccccceeeee-ecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence            567899999999999 699999999999999888766544433 334678999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        87 l~V~   90 (91)
T d1tnna_          87 LTIQ   90 (91)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=5e-17  Score=97.31  Aligned_cols=76  Identities=24%  Similarity=0.424  Sum_probs=62.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++.......       ....+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        15 ~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1cs6a3          15 TYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR   86 (91)
T ss_dssp             EEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCCC-------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEecCCcEEEEEEE-EEccCCEEEEEecccccceEe-------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEE
Confidence            556789999999999 589999999999775443221       112467999999999999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        87 l~V~   90 (91)
T d1cs6a3          87 IIIH   90 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=92.25  Aligned_cols=81  Identities=17%  Similarity=0.292  Sum_probs=64.4

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      |.|...+.+..+.+|+++.|.|.+. |.|.+ .|+|+|+|..+....          ...+.|.....+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~-g~P~P~~i~W~k~g~~i~~~~----------~~~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIGGPA----------PSPSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEE-CSSSCCEEEEEETTEECSCSE----------ESSEEEEECCCSSCEEEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEe-cCCcceEEEEEECCEECCCCC----------CcceEEecCCccccEEEEEEEEc
Confidence            6677778888899999999999995 77765 899999999886543          22345666677899999999999


Q ss_pred             CCCc-ceeEEEEEE
Q psy11132         89 MVAE-DTQVQRLIV  101 (243)
Q Consensus        89 ~~~~-~~~~~~l~v  101 (243)
                      ..|. .+..+.|.|
T Consensus        71 ~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          71 LKGLASSRTATVHL   84 (85)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            9995 455666665

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.9e-16  Score=93.84  Aligned_cols=80  Identities=15%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee----ccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+....|.|.+ .|.|.|++.|+++|..+...........    ....+.|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        14 ~~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            467888899999 6999999999999999987655433221    12246799999999999999999999999999999


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        93 ~v~V~   97 (103)
T d1wwbx_          93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEE
Confidence            99887

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.6e-16  Score=93.15  Aligned_cols=86  Identities=28%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe-eeeceEEEEeecCCCCCeeEEEEEEeCCCc-c
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-DQYNSMLVIDSVSARHSGNYSCTVRNMVAE-D   93 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~   93 (243)
                      |.++.+.+|+++.|.|.+. +.|.+.+.|+|++..+....+...... ......|.|.+++.+|+|.|+|.|.|..|. .
T Consensus         3 P~~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEE-SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CeeEEEcCCCeEEEEEEEE-ecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            5567899999999999995 888889999999999877665444332 233568999999999999999999999886 4


Q ss_pred             eeEEEEEEE
Q psy11132         94 TQVQRLIVN  102 (243)
Q Consensus        94 ~~~~~l~v~  102 (243)
                      +..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            667777774

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-15  Score=93.30  Aligned_cols=97  Identities=18%  Similarity=0.299  Sum_probs=75.5

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |..||++....+   ...+....|.|.+. |.|.+.+.|+++|..+....+.......   ...+.|.|.+++.+|+|.|
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~-G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY   77 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEE-CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEE-EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEE
Confidence            678898865432   22455667888885 8899999999999999877665443222   2346799999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         83 SCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      +|.|.|..|..+..+.|.|..+|.
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          78 TLIAKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEEEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEEEcCCCEEEEEEEEEEEeCCC
Confidence            999999999999888888877664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.9e-16  Score=94.34  Aligned_cols=94  Identities=24%  Similarity=0.353  Sum_probs=71.5

Q ss_pred             EEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe---eccceeEEEEeecCCCCCee
Q psy11132        101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---LDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       101 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~  177 (243)
                      |..||.+....    ....+....|.|.+ .|.|.|.+.|+++|..+..........   .....+.|.|.+++.+|+|.
T Consensus         2 V~~PP~i~~~~----~~~~~~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           2 VYYPPRVVSLE----EPELRLEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCC----CCCCCCEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEcCCeeEEeC----CCEEEEEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence            44566654322    22345667788999 699999999999999998765543322   12234679999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEEe
Q psy11132        178 YTCVASNTAAQARYSSKLQVKG  199 (243)
Q Consensus       178 y~C~~~n~~g~~~~~~~l~v~~  199 (243)
                      |+|.|.|..|..+.++.+.|.+
T Consensus        77 Y~C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          77 YTLIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             EEEEEEETTEEEEEEEEECCSC
T ss_pred             EEEEEEcCCCEEEEEEEEEEEe
Confidence            9999999999999999888873

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=93.63  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|++++|.|.+ .|.|.|.+.|++++..+...           ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         9 ~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~~~~~-----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           9 THLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             SCEETTCCEEEEEEC-CTTCCCEEEEECTTCCEEEE-----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEECCCeEEEEEEe-EcCCchheEEEeecccceee-----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            457789999999999 69999999999976543321           356899999999999999999999999999999


Q ss_pred             EEEEe
Q psy11132        195 LQVKG  199 (243)
Q Consensus       195 l~v~~  199 (243)
                      |.|.+
T Consensus        77 v~V~~   81 (84)
T d2nxyb2          77 IVVLA   81 (84)
T ss_dssp             ECEEC
T ss_pred             EEEEe
Confidence            98883

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=5.4e-16  Score=94.51  Aligned_cols=82  Identities=29%  Similarity=0.458  Sum_probs=67.0

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      .+..|+++.|.|.+ .|.|.|.+.|+++|..+........ .......+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        16 t~~~G~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   94 (100)
T d1qz1a3          16 TANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH   94 (100)
T ss_dssp             ETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEcCCCCEEEEEEE-EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            45689999999999 6999999999999998875433211 122334578999999999999999999999999999999


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        95 l~V~   98 (100)
T d1qz1a3          95 LKVF   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.4e-15  Score=92.13  Aligned_cols=87  Identities=22%  Similarity=0.426  Sum_probs=66.2

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCC-CceeEEEE-CCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDI-PLTIKWLK-DGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .|....+.+|+++.|.|.+. +.| .+.+.|++ ++..+.. ..++.........++|.|.+++.+|+|.|+|.|.|..|
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~-g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVA-GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEEC-CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             ECCCEEEccCCcEEEEEEEE-eccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCC
Confidence            34567788999999999995 665 47999999 4454443 44555554444467899999999999999999999988


Q ss_pred             cc-eeEEEEEEE
Q psy11132         92 ED-TQVQRLIVN  102 (243)
Q Consensus        92 ~~-~~~~~l~v~  102 (243)
                      .. +.++.|.|.
T Consensus        85 ~~~~~tv~l~V~   96 (97)
T d1epfa1          85 TQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            64 456777764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.3e-16  Score=92.09  Aligned_cols=76  Identities=13%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      +..+.+|++++|.|.+. +.|.+.+.|++++..+..           ....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         8 ~~~v~~G~~~~L~C~~~-g~p~P~i~W~~~~~~~~~-----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~   75 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQ-----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI   75 (84)
T ss_dssp             SSCEETTCCEEEEEECC-TTCCCEEEEECTTCCEEE-----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeE-cCCchheEEEeeccccee-----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence            34588999999999994 889999999998754432           156799999999999999999999999988888


Q ss_pred             EEEEEcCC
Q psy11132         98 RLIVNVPP  105 (243)
Q Consensus        98 ~l~v~~~p  105 (243)
                      .|.|...|
T Consensus        76 ~v~V~~~~   83 (84)
T d2nxyb2          76 DIVVLAFQ   83 (84)
T ss_dssp             EECEECCC
T ss_pred             EEEEEecC
Confidence            88887655

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3e-16  Score=93.28  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=63.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+..|+++.|.|.+..|.|.+.+.|++.+..+...      ......+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        13 ~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~   86 (90)
T d1gsma1          13 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV------QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   86 (90)
T ss_dssp             EEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE------EEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee------eccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEE
Confidence            445689999999998568899999999877665321      12234678999999999999999999999999999888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        87 l~Vy   90 (90)
T d1gsma1          87 LLVY   90 (90)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8773

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=6.3e-16  Score=93.55  Aligned_cols=85  Identities=18%  Similarity=0.303  Sum_probs=68.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEE-eeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-   93 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   93 (243)
                      +.+..+.+|+++.|.|.+. +.|.+.+.|+++|..+.......+.. ......+|.|.+++.+|+|.|+|.|.|..|.. 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~-g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEE-CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCEEEecCCeEEEEEEEE-EecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            4678899999999999995 88888999999999987654433322 22235689999999999999999999999874 


Q ss_pred             eeEEEEEE
Q psy11132         94 TQVQRLIV  101 (243)
Q Consensus        94 ~~~~~l~v  101 (243)
                      +..+.|.|
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            45677776

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=2.6e-16  Score=94.87  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+...+.+..+.+|+.+.|.|.+. +.| +..+.|+++|..+..........  ...++|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~   78 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIE-GNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLVFLRPQASDEGHYQCFAE   78 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEE-SCCSSCEEEEEESSSBCCTTTTTEEEC--TTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEec-CCCCeeEEEEEeeeeeeeeecceeeec--ccceEEEEeccChhcCeEEEEEEE
Confidence            57788888889999999999999996 555 45799999999886544332222  224679999999999999999999


Q ss_pred             eCCCcc-eeEEEEE
Q psy11132         88 NMVAED-TQVQRLI  100 (243)
Q Consensus        88 ~~~~~~-~~~~~l~  100 (243)
                      |..|.. +..+.|.
T Consensus        79 N~~G~~~s~~v~l~   92 (94)
T d1biha1          79 TPAGVASSRVISFR   92 (94)
T ss_dssp             ETTEEEECCCEEEE
T ss_pred             eCCCEEEEEEEEEE
Confidence            999863 3444443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.64  E-value=1.5e-15  Score=94.20  Aligned_cols=93  Identities=22%  Similarity=0.379  Sum_probs=69.0

Q ss_pred             cCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC----CC--ce------EEEEeeeeceEEEEeec
Q psy11132          8 VPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN----SA--AL------SITHVDQYNSMLVIDSV   74 (243)
Q Consensus         8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~----~~--~~------~~~~~~~~~~~l~i~~~   74 (243)
                      .+|.+... +.+.++.+|+++.|.|.+. +.|.+.+.|++++.....    ..  ..      .........+.|.|.++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEE-CSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEE-EcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            46777654 6789999999999999996 889999999997643211    11  01      11111223578999999


Q ss_pred             CCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132         75 SARHSGNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      +.+|+|.|+|.|.|..|.....+.|.|
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999888888876

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-15  Score=92.27  Aligned_cols=92  Identities=24%  Similarity=0.392  Sum_probs=71.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeee----cC--CCceEEEEeeeeceEEEEeecCC-CCC
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYL----DN--SAALSITHVDQYNSMLVIDSVSA-RHS   79 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~----~~--~~~~~~~~~~~~~~~l~i~~~~~-~d~   79 (243)
                      .||.+...+....+.+|+.+.|.|.+. +.|++ .+.|++++...    ..  ..++.+... ...+.|.|.+++. +|+
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~-g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~~D~   78 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSE-SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-QGRSELHIENLNMEADP   78 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECC-CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-TTEEEEEECSCCTTTSS
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEE-ecCCeeEEEEEeccceeeeecccCCCceEEEEeC-CCEEEEEEeccccccCC
Confidence            489998888888899999999999995 66655 79999976432    11  223333322 2357899999984 799


Q ss_pred             eeEEEEEEeCCCcceeEEEEEE
Q psy11132         80 GNYSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        80 G~Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |.|+|.|.|..|..+..+.|.|
T Consensus        79 G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          79 GQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999888888776

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=92.51  Aligned_cols=90  Identities=24%  Similarity=0.462  Sum_probs=71.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+..  .+..+.+|++++|.|.+. + +++.+.|++++..+....+.....   ..+.|.|.+++.+|.|.|+|.|.|
T Consensus         5 ~P~i~~--~~~~v~~g~~v~l~C~~~-~-~~~~v~W~~~~~~l~~~~~~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2           5 QPFLQV--TNTTVKELDSVTLTCLSN-D-IGANIQWLFNSQSLQLTERMTLSQ---NNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             CCCEEC--SCSEECTTSCEEEEECCC-C-SSCEEEEEETTEECCCCTTEEEET---TTTEEEECSCCGGGCEEEEEEEES
T ss_pred             CCeEEc--CceEEeCCCeEEEEEccC-C-CCCCEEEEEeeeecccccceeccC---CceEEEEeccchhhceEEEEEEEe
Confidence            455543  456789999999999973 4 456999999999998877665432   256899999999999999999999


Q ss_pred             CCCcc-eeEEEEEEEcCC
Q psy11132         89 MVAED-TQVQRLIVNVPP  105 (243)
Q Consensus        89 ~~~~~-~~~~~l~v~~~p  105 (243)
                      ..+.. +..+.|.|..+|
T Consensus        78 ~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          78 PVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             SSCCEECCCCEEEECCSC
T ss_pred             CCCCeEEEeEEEEEEcCC
Confidence            88865 567889888776

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.5e-16  Score=92.88  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      +..|+.+.|.|.+ .|.|.+.+.|++++..+.....    ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus        13 ~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          13 AQIGDSVSLTCST-TGCESPFFSWRTQIDSPLNGKV----TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EETTSCEEEEEEE-ESCSSCEEEEEETTCCCCSSEE----EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCCEEEEEEec-cCCCCceEEEEecCccceeeee----eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            4579999999999 6999999999998876553321    2223467899999999999999999999999999999988


Q ss_pred             EE
Q psy11132        197 VK  198 (243)
Q Consensus       197 v~  198 (243)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.3e-16  Score=92.33  Aligned_cols=87  Identities=22%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+..+.+.+|+++.|.|.+.++.++++|+|+|++..+....+....    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG----MGRRLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE----ESSEEEECSCCGGGCEEEEEESS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec----CCCEEEECCCChhcCEEEEEEEC
Confidence            56888888888899999999999998644445699999999888765543222    25689999999999999999997


Q ss_pred             eCCCcceeEEEEEE
Q psy11132         88 NMVAEDTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~~~~~~~l~v  101 (243)
                      +..+   .++.|.|
T Consensus        81 n~~~---~t~~l~V   91 (93)
T d1n26a1          81 GRPA---GTVHLLV   91 (93)
T ss_dssp             SSCS---CEEEEEE
T ss_pred             Cccc---cEEEEEE
Confidence            5433   3344544

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.1e-16  Score=98.58  Aligned_cols=94  Identities=22%  Similarity=0.329  Sum_probs=72.5

Q ss_pred             ecCCCccC-----CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC----------------------------
Q psy11132          7 TVPPKLSP-----TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN----------------------------   53 (243)
Q Consensus         7 ~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~----------------------------   53 (243)
                      +.||++..     .+..+.+.+|++++|.|.+. |.|.+.+.|++++..+..                            
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~-G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE   80 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECC-SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEE-EecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeec
Confidence            46888753     25577899999999999995 889999999997765421                            


Q ss_pred             -CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         54 -SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        54 -~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                       ..+..+.. ....+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        81 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          81 TEGRVRVET-TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CSSSCEEEE-ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cCceEEEEE-CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence             11222221 2235789999999999999999999999998888888875

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-15  Score=90.07  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR   98 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   98 (243)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+.....    ......+.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus        11 ~~~~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKV----TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             EEEETTSCEEEEEEEE-SCSSCEEEEEETTCCCCSSEE----EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCEEEEEEecc-CCCCceEEEEecCccceeeee----eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            4467899999999995 889999999998876544321    11223578999999999999999999999999888888


Q ss_pred             EEEE
Q psy11132         99 LIVN  102 (243)
Q Consensus        99 l~v~  102 (243)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.3e-16  Score=91.99  Aligned_cols=83  Identities=22%  Similarity=0.389  Sum_probs=67.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCcce-eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~  192 (243)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......... .....+.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus         6 ~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~   84 (91)
T d1rhfa1           6 LTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   84 (91)
T ss_dssp             EEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             EEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence            456789999999999 699999999999999988765543333 23335679999999999999999999999975 556


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1rhfa1          85 VWLTVE   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            778775

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=94.04  Aligned_cols=84  Identities=26%  Similarity=0.366  Sum_probs=62.3

Q ss_pred             CCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC----CC--------eeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FP--------VNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~----~~--------~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ....+..|+++.|.|.+ .|.|.|.+.|++++......    ..        ..........+.|.|.++..+|+|.|+|
T Consensus        13 ~~~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   91 (109)
T d2fdbp2          13 ANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC   91 (109)
T ss_dssp             CCEEECTTCCEEEEEEE-ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEE
Confidence            33678899999999999 59999999999876532211    00        0111112335779999999999999999


Q ss_pred             EEEccCcceeeeEEEEE
Q psy11132        181 VASNTAAQARYSSKLQV  197 (243)
Q Consensus       181 ~~~n~~g~~~~~~~l~v  197 (243)
                      .|.|..|....++.|.|
T Consensus        92 ~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          92 LAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEECSSCEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999999888876

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=1.5e-15  Score=91.83  Aligned_cols=82  Identities=21%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE-eeccceeEEEEeecCCCCCeeEEEEEEccCccee-ee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~  192 (243)
                      ..+..|+++.|.|.+ .|.|.+.+.|+++|..+......... ......+.|.|.+++.+|+|.|+|.|.|..|... .+
T Consensus        13 ~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s   91 (97)
T d1biha3          13 MMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS   91 (97)
T ss_dssp             EEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             EEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEE
Confidence            556789999999999 68999999999999998765443322 2233356899999999999999999999999754 56


Q ss_pred             EEEEE
Q psy11132        193 SKLQV  197 (243)
Q Consensus       193 ~~l~v  197 (243)
                      +.|+|
T Consensus        92 ~~L~V   96 (97)
T d1biha3          92 LKLTV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77776

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.8e-15  Score=91.49  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCC---CceeEEEECCeeecC---CCceEEEEee-----eeceEEEEeecCCCC
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDI---PLTIKWLKDGRYLDN---SAALSITHVD-----QYNSMLVIDSVSARH   78 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~---~~~~~~~~~~-----~~~~~l~i~~~~~~d   78 (243)
                      |.|...+.+..+.+|++++|.|.+. +.|   .+.+.|++++.....   ..++......     ...+.|.|.+++..|
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEE-CCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeec-CCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            4455667788999999999999996 666   468999998754321   2222222111     224689999999999


Q ss_pred             CeeEEEEEEeCCCcceeEEEEEEEcC
Q psy11132         79 SGNYSCTVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~  104 (243)
                      +|.|+|.|.|..|..+..+.|.|.++
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999753

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=8.8e-16  Score=95.34  Aligned_cols=95  Identities=26%  Similarity=0.457  Sum_probs=68.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE-------EeeeeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-------HVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ||.+........+.+|+++.|.|.+..+.|.+.++|++++..+.........       ......+.|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            5655544344568899999999998667889999999999877543221111       111224579999999999999


Q ss_pred             EEEEEEeCCCcc--eeEEEEEEEc
Q psy11132         82 YSCTVRNMVAED--TQVQRLIVNV  103 (243)
Q Consensus        82 Y~C~~~~~~~~~--~~~~~l~v~~  103 (243)
                      |+|.|.|..|..  +..++|.|.+
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEEECCCcEEEEEEEEEEEEe
Confidence            999999999875  4466677654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-16  Score=95.19  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCe-eEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG-NYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~   87 (243)
                      .|.+...+.+..+.+|+.+.|.|.+. +.|.+.++|++++..+......   ........|.|.+++.+|.| .|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~~Y~C~a~   77 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMK---SGGLPSLGLTLANVTSDLNRKNVTCWAE   77 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEE-CSSCCCCCEEESCCCSSEEECC---CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeecc-CCCCcEEEEEECCceeeeeeee---eeeccceeEEEccccccccceEEEEEEE
Confidence            57777777788899999999999995 8898999999998776542221   11223578999999999999 7999999


Q ss_pred             eCCCcceeEEEEEE
Q psy11132         88 NMVAEDTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~~~~~~~l~v  101 (243)
                      |..|.....+.|.|
T Consensus        78 N~~G~~~~s~~l~V   91 (92)
T d2ifga1          78 NDVGRAEVSVQVNV   91 (92)
T ss_dssp             ETTEECCEEECCCC
T ss_pred             cCCCEEEEEEEEEE
Confidence            99998877776654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-15  Score=87.90  Aligned_cols=73  Identities=21%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~  192 (243)
                      ..+.+|+.+.|.|.+ .|.|.| +++|+++|..+....          .+.+.|.....+|+|.|+|.|.|..|.. +..
T Consensus        11 ~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~----------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~   79 (85)
T d1rhfa2          11 LAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPA----------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT   79 (85)
T ss_dssp             EEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSE----------ESSEEEEECCCSSCEEEEEEEEETTEEEECCC
T ss_pred             EEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCC----------CcceEEecCCccccEEEEEEEEcCCCcEEEEE
Confidence            557789999999999 588876 999999999887542          1224556667789999999999999965 446


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      +.|.|+
T Consensus        80 ~~v~Vk   85 (85)
T d1rhfa2          80 ATVHLQ   85 (85)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            777663

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-16  Score=97.57  Aligned_cols=89  Identities=30%  Similarity=0.528  Sum_probs=67.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEE------eeeeceEEEEeecCCCCCee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------VDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~   81 (243)
                      .||.+........+.+|+.++|.|.+..+.|.+.+.|++++..+....+.....      .......|.|.+++.+|+|.
T Consensus         1 VPP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           1 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred             CCCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence            377777666667789999999999985688889999999998875533222111      11124679999999999999


Q ss_pred             EEEEEEeCCCcceeE
Q psy11132         82 YSCTVRNMVAEDTQV   96 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~   96 (243)
                      |+|.|.|..|....+
T Consensus        81 Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          81 YSCEARNGYGTPMTS   95 (104)
T ss_dssp             EEEEEECSSSCCEEC
T ss_pred             EEEEEEECCCceEEE
Confidence            999999999976443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-16  Score=91.38  Aligned_cols=81  Identities=23%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             CCCccC--CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSP--TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +|.+..  .+.+..+.+|+.+.|.|.+. |.|.+.+.|+|++..+.....              +.+++++|+|.|+|.|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~-G~P~P~v~W~k~g~~~~~~~~--------------~~~v~~~d~G~Y~C~A   66 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRA   66 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCE-EESCCEEEEEETTTEECCTTS--------------CEECCGGGCEEEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEe-EcCccEEEEEEeeccceeeee--------------eeccccCCCCEEEEEE
Confidence            355532  25677899999999999995 889999999999987654332              3467889999999999


Q ss_pred             EeCCCcceeEEEEEEEcC
Q psy11132         87 RNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~~~  104 (243)
                      .|..|..+..+.|.|..|
T Consensus        67 ~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          67 RSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCEEEEEEEEEEECC
Confidence            999999888888888653

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-14  Score=90.00  Aligned_cols=94  Identities=22%  Similarity=0.261  Sum_probs=71.0

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCC---CceeEEEECCeeec---CCCceEEEEee-----eeceEEEEeecCCCCCe
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDI---PLTIKWLKDGRYLD---NSAALSITHVD-----QYNSMLVIDSVSARHSG   80 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~---~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G   80 (243)
                      |...+.+..+.+|++++|.|.+. +.|   .+.+.|+|++....   ...++......     ...+.|.|.+++.+|+|
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEE-CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EeECCceEEEeCCCEEEEEEEEc-cCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            34456778899999999999996 666   46999999875431   22233222211     22467999999999999


Q ss_pred             eEEEEEEeCCCcceeEEEEEEEcCCC
Q psy11132         81 NYSCTVRNMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        81 ~Y~C~~~~~~~~~~~~~~l~v~~~p~  106 (243)
                      .|+|.|.|..|..+..+.|.|..++.
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            99999999999998899999986654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.5e-15  Score=94.21  Aligned_cols=94  Identities=28%  Similarity=0.491  Sum_probs=66.9

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE-------eeccceeEEEEeecCCCCCe
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-------DLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ||.++....+ ..+..|+++.|.|.+..|.|.+.+.|++++..+.........       ......+.|.|.+++.+|+|
T Consensus         2 PP~~p~~~~~-~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G   80 (110)
T d1f97a2           2 PPSKPTISVP-SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG   80 (110)
T ss_dssp             CCCCCEEECC-SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE
T ss_pred             CCccceeCCC-CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCE
Confidence            4555444333 457789999999998668999999999999877544322111       11223457899999999999


Q ss_pred             eEEEEEEccCcceee--eEEEEEE
Q psy11132        177 EYTCVASNTAAQARY--SSKLQVK  198 (243)
Q Consensus       177 ~y~C~~~n~~g~~~~--~~~l~v~  198 (243)
                      .|+|.|.|..|....  .+.|.|.
T Consensus        81 ~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          81 EYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             EEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEEEEECCCcEEEEEEEEEEEE
Confidence            999999999997755  4556555

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=89.81  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=61.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|++++|.|.+..+.|.+.+.||+++..+...         .....|.|.++..+|+|.|.|.|.|..|... ..+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~---------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS---------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc---------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            446789999999998556678899999999876422         1246799999999999999999999988754 567


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|+
T Consensus        81 ~l~V~   85 (88)
T d2fcba2          81 TITVQ   85 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88887

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=96.69  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----------------------------eeEEeeccceeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----------------------------VNVSDLDSFSSLLS  166 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~  166 (243)
                      ..+..|+++.|.|.+ .|.|.+.+.|++++..+.....                            ..........+.|.
T Consensus        19 v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~   97 (130)
T d1gxea_          19 IVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFT   97 (130)
T ss_dssp             EEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEE
T ss_pred             EEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEE
Confidence            457889999999999 6999999999997655432110                            01111223357899


Q ss_pred             EeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       167 i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        98 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          98 VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            99999999999999999999999999888875

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-14  Score=89.70  Aligned_cols=81  Identities=26%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec------cceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      .+....+.|.+ .|.|.|.+.|+++|..+............      ...+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        14 ~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            34444466688 69999999999999998876554332211      124679999999999999999999999999999


Q ss_pred             EEEEEEee
Q psy11132        193 SKLQVKGN  200 (243)
Q Consensus       193 ~~l~v~~~  200 (243)
                      +.+.|...
T Consensus        93 i~v~v~~~  100 (107)
T d1he7a_          93 IMAAFMDN  100 (107)
T ss_dssp             EEECCCSC
T ss_pred             EEEEEEcC
Confidence            99988843

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.9e-15  Score=89.24  Aligned_cols=93  Identities=19%  Similarity=0.378  Sum_probs=66.6

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecC----CCCC-eeEEeeccceeEEEEeecC-CCCCe
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLS----PRFP-VNVSDLDSFSSLLSINSVS-AAHSG  176 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~----~~~~-~~~~~~~~~~~~l~i~~~~-~~d~g  176 (243)
                      ||.+...+ ....+.+|+.+.|.|.+ .|.|++ .+.|++++....    .... ..........+.|.|.++. .+|+|
T Consensus         2 PP~i~~~~-~~~~v~~G~~v~l~C~v-~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVK-SSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESC-SEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEEcC-CcEEECcCCeEEEEEEE-EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            45554433 23567899999999999 588866 799998764332    1111 1122233346789999998 57999


Q ss_pred             eEEEEEEccCcceeeeEEEEEE
Q psy11132        177 EYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       177 ~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      .|+|.|.|..|.....+.|.|+
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999988888874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.5e-15  Score=89.88  Aligned_cols=81  Identities=23%  Similarity=0.393  Sum_probs=65.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+............  .+.|.|.+++.+|+|.|+|.|.|..+.......
T Consensus        11 ~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~   87 (92)
T d1epfa2          11 QEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKTDEGTYRCEGRILARGEINFKD   87 (92)
T ss_dssp             EECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECT--TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeee--eeeEEECCCCHHhCEEEEEEEEECcCCEEEEEE
Confidence            567899999999999 69999999999999988765443333222  245999999999999999999998887766666


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      +.|.
T Consensus        88 i~Vi   91 (92)
T d1epfa2          88 IQVI   91 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-16  Score=97.04  Aligned_cols=93  Identities=26%  Similarity=0.489  Sum_probs=68.2

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe------eccceeEEEEeecCCCCCee
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------LDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ||.++....+ ..+..|+.+.|.|.+..|.|.+.+.|++++..+..........      .....+.|.|.++..+|+|.
T Consensus         2 PP~~p~~~~~-~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           2 PPSKPTVNIP-SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             CCCCCCCCCB-SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred             CCcccccCCC-CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence            4555444333 4567899999999986689999999999998876543322111      11224678999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEE
Q psy11132        178 YTCVASNTAAQARYSSKLQV  197 (243)
Q Consensus       178 y~C~~~n~~g~~~~~~~l~v  197 (243)
                      |+|.|.|..|....+..+.|
T Consensus        81 Y~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          81 YSCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEEECSSSCCEECCCBCC
T ss_pred             EEEEEEECCCceEEEEEEEE
Confidence            99999999998866554443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.5e-15  Score=88.88  Aligned_cols=79  Identities=25%  Similarity=0.394  Sum_probs=65.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|+++.|.|.+ .+ +++.+.|++++..+..........   ..+.|.|.++..+|.|.|+|.|.|..|... ..+
T Consensus        13 ~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~~~~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          13 TTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLTERMTLSQ---NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCCTTEEEET---TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             eEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeecccccceeccC---CceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            557889999999988 45 568999999999998776654432   246799999999999999999999999774 568


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        88 ~L~V~   92 (96)
T d1l6za2          88 KLDII   92 (96)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88887

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=91.47  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=73.3

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      +.||.+.+.+....+.+|+.++|.|.+.++.|.+  .+.|++++..+......    .....+.|.|.....+|.|.|+|
T Consensus         2 ~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~----~~~~~s~l~i~~~~~dd~g~ytC   77 (103)
T d1iama1           2 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV----GEPAEVTTTVLVRRDHHGAQFSC   77 (103)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC----TTTEEEEEEEECCSSCSSCEEEE
T ss_pred             CCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc----cccceEEEEEeeehhHCCCEEEE
Confidence            4678888887788899999999999998666654  68899999887543211    11225679999999999999999


Q ss_pred             EEEeCCCcceeEEEEEEEcCC
Q psy11132         85 TVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      .|.|..+.......+.+..++
T Consensus        78 ~A~n~~g~~~~~~~~~~s~p~   98 (103)
T d1iama1          78 RTELDLRPQGLELFENTSAPY   98 (103)
T ss_dssp             EEEEECGGGTSCEEEEECCCE
T ss_pred             EEEeCCCCccCeEeeeEcCCC
Confidence            999998887666666665443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.2e-15  Score=92.44  Aligned_cols=90  Identities=20%  Similarity=0.388  Sum_probs=68.4

Q ss_pred             cCCCccCCCCCcccccC---CeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVG---ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .+|.+...+.+..+.+|   +++.|.|.+. +.|.+.+.|+++|..+...........  ....|.|..++.+|+|.|+|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~-g~P~p~v~W~~ng~~i~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C   79 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQC   79 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEE-EESCCEEEEEETTEECCCSTTSSEEEE--TTEEEEESCCHHHHCEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEE-EeCCCEEEEEEeeeeccCCCCceEEee--eeeEEEEecccccCCEEEEE
Confidence            35677766777666555   7899999995 788889999999999876544333322  25678888899999999999


Q ss_pred             EEEeCCCcc-eeEEEEE
Q psy11132         85 TVRNMVAED-TQVQRLI  100 (243)
Q Consensus        85 ~~~~~~~~~-~~~~~l~  100 (243)
                      .|.|..|.. +..+.|.
T Consensus        80 ~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          80 VATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEETTEEEECCCEEEE
T ss_pred             EEEECCCEEEEEEEEEe
Confidence            999999974 4455554

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.2e-15  Score=87.71  Aligned_cols=75  Identities=19%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~  193 (243)
                      ..+.+|+.++|.|.+..+.++..+.||++|..+.....         ...|.|.+++.+|+|.|.|.|.|..+.. +..+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~---------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v   80 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL   80 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC---------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc---------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence            44678999999999965557779999999998864321         3568999999999999999999988765 4568


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|+|.
T Consensus        81 ~i~V~   85 (89)
T d1f2qa2          81 NITVI   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88888

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=89.24  Aligned_cols=89  Identities=15%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             CCcccccCCeEEE---EEEeeCCCCCceeEEEECCeeecCCCceEEEEeee------eceEEEEeecCCCCCeeEEEEEE
Q psy11132         17 PERTLNVGERASL---ICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ------YNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        17 ~~~~~~~g~~~~l---~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ..+.+.+|....+   .|.+ .|.|.+.+.|+++|..+....+........      ....|.|.+++..|+|.|+|.|.
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            3444555555554   4577 599999999999999988766544332221      23679999999999999999999


Q ss_pred             eCCCcceeEEEEEEEcCCC
Q psy11132         88 NMVAEDTQVQRLIVNVPPK  106 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~~~p~  106 (243)
                      |..|.....+.|.|..+|.
T Consensus        84 N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          84 NPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             ETTEEEEEEEEECCCSCTT
T ss_pred             eCCCEEEEEEEEEEEcCCC
Confidence            9999999999999887774

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=2.1e-15  Score=92.51  Aligned_cols=80  Identities=21%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      ...+.+.+|+.+.|.|.+..+.|.+.+.|++++..+........... ...++|.|.+++.+|+|.|+|.|.|..+....
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-TTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-cCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            45678999999999999755788889999999977654332222211 12567999999999999999999998876544


Q ss_pred             E
Q psy11132         96 V   96 (243)
Q Consensus        96 ~   96 (243)
                      .
T Consensus        90 ~   90 (105)
T d1cs6a2          90 S   90 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=86.54  Aligned_cols=87  Identities=20%  Similarity=0.342  Sum_probs=63.5

Q ss_pred             CCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +|.|... .....+.+|+.+.|.|.+. + |++.+.|+++|..+.... +..+.. ....+.|.|.+++..|+|.|+|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~-p~~~v~W~k~g~~i~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-D-HDAEVKWLKNGQEIQMSGSKYIFES-IGAKRTLTISQCSLADDAAYQCVV   81 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-S-SSSCCEEEESSSEECCCSSSSEEEE-ETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-C-CCceEEEEEcCccceeeeeeEeeec-cCCeEEeecCCCCceecEEEEEEE
Confidence            4555444 3345689999999999983 4 777999999999997654 344433 334678999999999999999998


Q ss_pred             EeCCCcceeEEEEEEE
Q psy11132         87 RNMVAEDTQVQRLIVN  102 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v~  102 (243)
                      .|.    +.++.|.|.
T Consensus        82 ~n~----~~s~~l~V~   93 (94)
T d1pd6a_          82 GGE----KCSTELFVK   93 (94)
T ss_dssp             TTE----EECCEEEEE
T ss_pred             eeE----EEEEEEEEE
Confidence            653    334455553

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.9e-15  Score=88.00  Aligned_cols=78  Identities=22%  Similarity=0.377  Sum_probs=60.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .+ |++.+.|+++|..+.................|.|.++..+|+|.|+|.|.|    ...++.
T Consensus        16 ~~v~~G~~v~l~c~v-~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~   89 (94)
T d1pd6a_          16 YQVSKGHKIRLTVEL-AD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTE   89 (94)
T ss_dssp             EEEETTSCEEEEEEC-SS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCE
T ss_pred             EEECcCCeEEEEEEE-CC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEE
Confidence            457799999999998 44 788999999999987654433333444567899999999999999999976    445556


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        90 l~V~   93 (94)
T d1pd6a_          90 LFVK   93 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-15  Score=90.47  Aligned_cols=79  Identities=20%  Similarity=0.219  Sum_probs=64.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCe-eEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+......   ........|.|.++..+|.| .|+|.|.|..|....++
T Consensus        12 ~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          12 ASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMK---SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             SCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECC---CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             EEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeeeeee---eeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            678899999999999 69999999999998776532211   12233578999999999999 69999999999988887


Q ss_pred             EEEE
Q psy11132        194 KLQV  197 (243)
Q Consensus       194 ~l~v  197 (243)
                      .|.|
T Consensus        88 ~l~V   91 (92)
T d2ifga1          88 QVNV   91 (92)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            7765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.9e-14  Score=84.76  Aligned_cols=84  Identities=20%  Similarity=0.384  Sum_probs=62.9

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .....+..+.+|+++.|.|.+  +.|.+.+.|++++..+....+..+. ......+.|.|.+++.+|+|.|+|.|.|.  
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--   79 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG--   79 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEEC--SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE--
T ss_pred             EcCCCCEEEeCCCcEEEEEEE--CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc--
Confidence            344567889999999999998  3467789999999988765543222 22233578999999999999999998653  


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                        ..++.|.|.
T Consensus        80 --~~~a~l~V~   88 (90)
T d1x44a1          80 --QSSAKLSVD   88 (90)
T ss_dssp             --EEEEEEEEE
T ss_pred             --eEEEEEEEE
Confidence              345566665

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=88.92  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecC---CCceEEEE-eeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         14 PTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDN---SAALSITH-VDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~---~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ..+....+.+|+++.|.|.+. +.| .|.+.|+|++..+..   ........ .......|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~-g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVK-YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEE-CSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ecCCeEEEeCCCeEEEEEEEE-eeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            345567799999999999996 555 579999998875532   11221111 112245799999999999999999999


Q ss_pred             CCCcc-eeEEEEEEEc
Q psy11132         89 MVAED-TQVQRLIVNV  103 (243)
Q Consensus        89 ~~~~~-~~~~~l~v~~  103 (243)
                      ..|.. +..+.|.|.+
T Consensus        87 ~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          87 QSNLIESHSTTLYVTD  102 (104)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCeEEEEEEEEEEEE
Confidence            98874 5577777753

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=4e-15  Score=88.19  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~  193 (243)
                      ..+.+|+++.|.|.+..+.|.+.+.||++|..+...         .....|.|.+++.+|+|.|.|.|.|..|... ..+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~---------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v   82 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV   82 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee---------ccccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence            346789999999998556677899999999876421         1135689999999999999999999988653 567


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|+|.
T Consensus        83 ~itV~   87 (89)
T d1fnla2          83 NITIT   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77776

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-16  Score=98.34  Aligned_cols=100  Identities=22%  Similarity=0.347  Sum_probs=76.3

Q ss_pred             eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC--ceEEEEee---eeceEEEEeecCCC
Q psy11132          3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVD---QYNSMLVIDSVSAR   77 (243)
Q Consensus         3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~---~~~~~l~i~~~~~~   77 (243)
                      +|.|..||.+.. +....+.+|+.+.|.|.+.+..+.+.+.|++++..+....  ++.+....   ...+.|.|.+++..
T Consensus         1 TL~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           1 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             CeEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            366788998864 4556788999999999996445666899999998886532  33332221   12357999999999


Q ss_pred             C-CeeEEEEEEeCCCcceeEEEEEEEc
Q psy11132         78 H-SGNYSCTVRNMVAEDTQVQRLIVNV  103 (243)
Q Consensus        78 d-~G~Y~C~~~~~~~~~~~~~~l~v~~  103 (243)
                      | +|.|+|.|.|..|..+..+.|.|..
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence            9 6999999999999988888887754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=88.34  Aligned_cols=83  Identities=19%  Similarity=0.299  Sum_probs=63.8

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeCCEecCC-CCC--eeEEee-----ccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKDGKPLSP-RFP--VNVSDL-----DSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~-~~~--~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..+..|+++.|.|.+ .|.|   .|.+.|++++..... ...  ......     ....+.|.|.+++.+|+|.|+|.|.
T Consensus        14 ~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (110)
T d2avga1          14 GEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVS   92 (110)
T ss_dssp             EEEETTSEEEEEEEE-ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEee-cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEE
Confidence            567789999999999 5777   578999998754322 111  111111     1224679999999999999999999


Q ss_pred             ccCcceeeeEEEEEE
Q psy11132        184 NTAAQARYSSKLQVK  198 (243)
Q Consensus       184 n~~g~~~~~~~l~v~  198 (243)
                      |..|..+.++.|.|.
T Consensus        93 N~~G~~~~~~~L~V~  107 (110)
T d2avga1          93 TKDKFDCSNFNLTVH  107 (110)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCeEEEEEEEEEE
Confidence            999999999999998

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-14  Score=87.02  Aligned_cols=86  Identities=15%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..+.+|+.++|.|.+.++.|.+  .+.|++++..+.....    ......+.|.|.....+|+|.|+|.|.|..|.....
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~----~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~   89 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLE   89 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc----ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCe
Confidence            4577899999999997666655  6889999988753211    112235679999999999999999999999988888


Q ss_pred             EEEEEEeecCCCCCeee
Q psy11132        193 SKLQVKGNLNRLPPSYT  209 (243)
Q Consensus       193 ~~l~v~~~~~~~~p~~~  209 (243)
                      +.+.+.     .|+.+.
T Consensus        90 ~~~~~s-----~p~~L~  101 (103)
T d1iama1          90 LFENTS-----APYQLQ  101 (103)
T ss_dssp             EEEEEC-----CCEECE
T ss_pred             EeeeEc-----CCCEEE
Confidence            877777     565543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.6e-16  Score=90.60  Aligned_cols=69  Identities=25%  Similarity=0.366  Sum_probs=58.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+....              .+..++.+|+|.|.|.|.|..|..+..+.
T Consensus        14 ~~~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~~~~--------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          14 WTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPIG--------------ESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             EEEETTCEECCCCCC-EEESCCEEEEEETTTEECCTT--------------SCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEE-eEcCccEEEEEEeeccceeee--------------eeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            456789999999999 699999999999988765432              23467889999999999999999988888


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        79 l~V~   82 (84)
T d2oz4a3          79 VNVL   82 (84)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8887

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.8e-15  Score=89.99  Aligned_cols=86  Identities=21%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC--CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS--AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      +....+.+|+.+.|.|.+..+.|.+.|.|+|++..+...  ....+..   ...+|.|.+++.+|+|.|+|.+.|..+..
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   85 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ---HKEKLWFVPAKVEDSGHYYCVVRNSSYCL   85 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE---ETTEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec---cCCEEEeccceecCCEEEEEEEECCCCeE
Confidence            445667889999999998667788899999998655422  2222221   25689999999999999999999999998


Q ss_pred             eeEEEEEEEcC
Q psy11132         94 TQVQRLIVNVP  104 (243)
Q Consensus        94 ~~~~~l~v~~~  104 (243)
                      ...+.|.|...
T Consensus        86 ~~~~~L~V~~~   96 (101)
T d1iray1          86 RIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEeC
Confidence            88899998754

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-16  Score=98.18  Aligned_cols=102  Identities=25%  Similarity=0.330  Sum_probs=74.1

Q ss_pred             EEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--eeEEe---eccceeEEEEeecCCC
Q psy11132         99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSD---LDSFSSLLSINSVSAA  173 (243)
Q Consensus        99 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~---~~~~~~~l~i~~~~~~  173 (243)
                      |.|..||.+..  .....+.+|+.+.|.|.+..+.|++.+.|++++..+.....  +....   .....+.|.|.++..+
T Consensus         2 L~V~~Pp~i~~--~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           2 LTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             eEEecCCEEec--CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            45666665543  23356788999999999953356778999999988765422  22111   1222467999999999


Q ss_pred             C-CeeEEEEEEccCcceeeeEEEEEEeecC
Q psy11132        174 H-SGEYTCVASNTAAQARYSSKLQVKGNLN  202 (243)
Q Consensus       174 d-~g~y~C~~~n~~g~~~~~~~l~v~~~~~  202 (243)
                      | +|.|+|.|.|..|..+..+.|.|.+...
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~~  109 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQGSEM  109 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEECCCC
Confidence            8 6999999999999999999998875443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=89.79  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=64.8

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeCCEecC---CCCCeeEEe-----eccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKDGKPLS---PRFPVNVSD-----LDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~---~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..+..|+++.|.|.+ .|.|   .|.+.|++++....   .........     .....+.|.|.+++.+|+|.|+|.|.
T Consensus        10 ~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (113)
T d2dava1          10 GTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   88 (113)
T ss_dssp             CEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEE-ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEE
Confidence            567889999999999 5877   57999999875321   111111111     11224679999999999999999999


Q ss_pred             ccCcceeeeEEEEEEeec
Q psy11132        184 NTAAQARYSSKLQVKGNL  201 (243)
Q Consensus       184 n~~g~~~~~~~l~v~~~~  201 (243)
                      |..|..+..+.|.|....
T Consensus        89 N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          89 YKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             CSSCEEEECCEEEEECCC
T ss_pred             eCCCEEEEEEEEEEEcCC
Confidence            999999999999998443

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.2e-14  Score=84.09  Aligned_cols=83  Identities=25%  Similarity=0.454  Sum_probs=63.0

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEe-CCEecCC-CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-e
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-R  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~  190 (243)
                      ..+..|+++.|.|.+ .|.| .+.+.|++ ++..+.. .............+.|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus        10 ~~v~~G~~~~l~C~v-~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1          10 GEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             EEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             EEEccCCcEEEEEEE-EeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            456789999999999 5777 47999998 4454443 3334444444556889999999999999999999999864 4


Q ss_pred             eeEEEEEE
Q psy11132        191 YSSKLQVK  198 (243)
Q Consensus       191 ~~~~l~v~  198 (243)
                      .++.|.|.
T Consensus        89 ~tv~l~V~   96 (97)
T d1epfa1          89 ATVNVKIF   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777664

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-14  Score=87.15  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=63.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe---ec--------cceeEEEEeecCCCCCe-eEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---LD--------SFSSLLSINSVSAAHSG-EYTCVA  182 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---~~--------~~~~~l~i~~~~~~d~g-~y~C~~  182 (243)
                      ..+..|+.+.|.|.+ .|.|.+.+.|+++|..+..........   ..        ...+.|.|.+++.+|.| .|+|.|
T Consensus        12 i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A   90 (107)
T d1iray3          12 MEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA   90 (107)
T ss_dssp             EECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred             EEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence            346789999999999 599999999999999887554322111   00        11367999999999999 599999


Q ss_pred             EccCcceeeeEEEE
Q psy11132        183 SNTAAQARYSSKLQ  196 (243)
Q Consensus       183 ~n~~g~~~~~~~l~  196 (243)
                      .|..|..+..+.|.
T Consensus        91 ~N~~G~~~~~i~L~  104 (107)
T d1iray3          91 KNTHGIDAAYIQLI  104 (107)
T ss_dssp             ECSSCEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE
Confidence            99999988777664

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5e-14  Score=84.91  Aligned_cols=91  Identities=16%  Similarity=0.261  Sum_probs=63.2

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEE--CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK--DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +|.|. ...+..+.+|+++.|.|.+. +.|.+.+.|++  ++..................++|.|.+++.+|+|.|+|.+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~-g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEE-SCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEe-ecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            57776 46788999999999999996 76666555432  2222222222222222333568999999999999999999


Q ss_pred             EeCCCcc-eeEEEEEE
Q psy11132         87 RNMVAED-TQVQRLIV  101 (243)
Q Consensus        87 ~~~~~~~-~~~~~l~v  101 (243)
                      .|..|.. +..+.|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999975 44467766

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.6e-14  Score=86.11  Aligned_cols=92  Identities=14%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC----CceEE---EEeeeeceEEEEeecCCCCCeeE
Q psy11132         10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS----AALSI---THVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |.+........+.+|+++.|.|.+. +.|.+.+.|++++......    .....   .......++|.|.+++.+|+|.|
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEE-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcC-CCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            4455556677899999999999996 7788899999855432110    00000   00011246799999999999999


Q ss_pred             EEEEEeCCCcceeEEEEEEE
Q psy11132         83 SCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        83 ~C~~~~~~~~~~~~~~l~v~  102 (243)
                      +|.+.|..|.....+.+.|.
T Consensus        81 ~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999987666555553

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.51  E-value=3.1e-15  Score=88.76  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +.....+..+.+|+++.|.|.+  +.|.+.+.|+++|..+....++.+...+ ..+.|.|.+++.+|+|.|+|.+.|.. 
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~n~~-   79 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANAK-   79 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEECS-SCEEEECCSCCSCCCSEECCBCSSCB-
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEeec-eeEEEEEcCCChhcCEEEEEEECceE-
Confidence            3445667889999999999998  4577799999999999988887776544 36789999999999999999986543 


Q ss_pred             cceeEEEEEEE
Q psy11132         92 EDTQVQRLIVN  102 (243)
Q Consensus        92 ~~~~~~~l~v~  102 (243)
                         .++.|.|.
T Consensus        80 ---~sa~l~V~   87 (89)
T d1tiua_          80 ---SAANLKVK   87 (89)
T ss_dssp             ---CCEEEEEE
T ss_pred             ---EEEEEEEE
Confidence               34556654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-15  Score=91.44  Aligned_cols=92  Identities=15%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEE-------eeeeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-------VDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ++.+...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..........       .....+.|.|.+++.+|+|.
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEE-SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeC-CCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceee
Confidence            34455556677799999999999996 88889999999765443211100000       00114679999999999999


Q ss_pred             EEEEEEeCCCcceeEEEEEE
Q psy11132         82 YSCTVRNMVAEDTQVQRLIV  101 (243)
Q Consensus        82 Y~C~~~~~~~~~~~~~~l~v  101 (243)
                      |+|.+.|..|.....+.|.+
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEEETTSSCEECCEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEE
Confidence            99999999998766555544

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.50  E-value=1.5e-14  Score=86.99  Aligned_cols=73  Identities=23%  Similarity=0.284  Sum_probs=58.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ..+.+|+.+.|.|.+ .|.|. +.+.|+++|..+...........  ..+.|.|.++..+|+|.|+|.|.|..|...
T Consensus        12 ~~v~~g~~~~l~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          12 VLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRK--DEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             EEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECT--TSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEeCCCeEEEEEEe-cCCCCeeEEEEEeeeeeeeeecceeeecc--cceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            556789999999999 57775 47999999999876544333222  245799999999999999999999999754

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=83.99  Aligned_cols=80  Identities=26%  Similarity=0.430  Sum_probs=60.0

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      +|.+...|....+.+|++++|.|.+. +.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGN-NFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTT-CC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEe-eeeeecceeeeeeeeeeecc-----------cceeEECCCChhhCCcEEEEec
Confidence            47777777778899999999999995 55554 67788888776542           4569999999999999999997


Q ss_pred             eCCCcceeEEEEEEE
Q psy11132         88 NMVAEDTQVQRLIVN  102 (243)
Q Consensus        88 ~~~~~~~~~~~l~v~  102 (243)
                      +...  +..+.|.|.
T Consensus        69 ~s~~--S~~v~l~V~   81 (82)
T d1f2qa1          69 QVNE--SEPVYLEVF   81 (82)
T ss_dssp             TSSC--CCCEEEEEE
T ss_pred             CCCC--cccEEEEEE
Confidence            6544  344556553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.50  E-value=2.8e-14  Score=83.82  Aligned_cols=79  Identities=16%  Similarity=0.238  Sum_probs=59.7

Q ss_pred             CccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      .+...+....+.+|+.++|.|.+.+..++..+.|+++|..+...           ...|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-----------~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-----------CSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc-----------ccceEEeeccccCCcEEEEECCCCc
Confidence            45555667789999999999999644344579999999887653           3458899999999999999998754


Q ss_pred             CcceeEEEEEEE
Q psy11132         91 AEDTQVQRLIVN  102 (243)
Q Consensus        91 ~~~~~~~~l~v~  102 (243)
                      .  +..+.|.|.
T Consensus        75 ~--S~~v~l~V~   84 (85)
T d2fcba1          75 L--SDPVHLTVL   84 (85)
T ss_dssp             C--CCCEEEEEE
T ss_pred             c--cccEEEEEE
Confidence            4  344555553

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.2e-14  Score=85.00  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCC--CCee-EE-eeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVN-VS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~--~~~~-~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+..|+++.|.|.+ .|.| .|.++|++++..+...  .... .. ........|.|.++..+|+|.|+|.|.|..|..
T Consensus        13 ~~v~~G~~v~L~C~v-~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          13 HSILAGDPFELECPV-KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             EEEETTSCEEEEEEE-ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEeCCCeEEEEEEE-EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence            456789999999999 4777 5899999988655321  1111 11 122234569999999999999999999999976


Q ss_pred             e-eeEEEEEE
Q psy11132        190 R-YSSKLQVK  198 (243)
Q Consensus       190 ~-~~~~l~v~  198 (243)
                      . .++.|.|.
T Consensus        92 ~s~~~~l~V~  101 (104)
T d2aw2a1          92 ESHSTTLYVT  101 (104)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4 56888776

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=4.8e-14  Score=82.56  Aligned_cols=80  Identities=15%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+....+.+|++++|.|.+. +.+.+ .+.|++++..+...           ...|.|.+++.+|+|.|+|.+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~a   71 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGA-YSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQT   71 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECC-CBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEEC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEec-cCCCCeEEEEeeeceeeeec-----------ceeeEecCCcccCCEEEEEEc
Confidence            345666667778899999999999985 55554 67778888766532           457999999999999999999


Q ss_pred             EeCCCcceeEEEEEE
Q psy11132         87 RNMVAEDTQVQRLIV  101 (243)
Q Consensus        87 ~~~~~~~~~~~~l~v  101 (243)
                      .+...  +..+.|.|
T Consensus        72 ~~s~~--S~~v~L~V   84 (84)
T d1fnla1          72 NLSTL--SDPVQLEV   84 (84)
T ss_dssp             SSSCC--CCCEEEEE
T ss_pred             cCCCc--cccEEEEC
Confidence            76543  33444443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.4e-13  Score=84.65  Aligned_cols=90  Identities=21%  Similarity=0.409  Sum_probs=66.5

Q ss_pred             CCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee-----------eeceEEEEeecCCC
Q psy11132         10 PKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD-----------QYNSMLVIDSVSAR   77 (243)
Q Consensus        10 p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~   77 (243)
                      |.+... .....+.+|+++.|.|.+. +.|.+.+.|+++|..+............           ...+.|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEE-ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEec-cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            444433 3345678899999999996 7888899999999988654332221110           11358999999999


Q ss_pred             CCe-eEEEEEEeCCCcceeEEEEE
Q psy11132         78 HSG-NYSCTVRNMVAEDTQVQRLI  100 (243)
Q Consensus        78 d~G-~Y~C~~~~~~~~~~~~~~l~  100 (243)
                      |.| .|+|.|.|..|..+..+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999887777664

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=1.2e-14  Score=89.08  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..+.+|+.+.|.|.+..+.|.+.+.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        14 v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          14 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV-SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             EEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE-CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeee-ecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            5678999999999975688999999999987664332221111 1224579999999999999999999998876554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=83.30  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             CCCCCCCCcEEEEEEeecCCCCCEEEEEe--CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        114 FDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ...+.+|+++.|.|.+ .|.|.|.+.|++  ++..................+.|.|.++..+|+|.|+|.|.|..|....
T Consensus        10 ~~~v~~G~~v~l~C~~-~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1          10 NVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             CEEECSSSCEEEEEEE-ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CEEEeCCCEEEEEEEE-eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence            3668899999999999 588877655432  2222222211222222334567999999999999999999999998654


Q ss_pred             e-EEEEEE
Q psy11132        192 S-SKLQVK  198 (243)
Q Consensus       192 ~-~~l~v~  198 (243)
                      . +.|.|+
T Consensus        89 ~~a~L~Vk   96 (96)
T d2c9aa1          89 NYAELVVK   96 (96)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            4 677763

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-14  Score=84.84  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+|+++.|.|.+ .+.| +++++|+|++..+.........    ....|.|.+++.+|+|.|+|.|.|..
T Consensus        16 v~~~~G~~v~L~C~~-~g~~~~~~i~W~k~~~~l~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          16 LTSLPGDSVTLTCPG-VEPEDNATVHWVLRKPAAGSHPSRWAG----MGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             EEECTTCCEEEECTT-SCTTCCSEEEEEEECSSSSCCCEEEEE----ESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             EEEeCCCcEEEEEEe-ecCCCCceEEEEEccccccceeeEEec----CCCEEEECCCChhcCEEEEEEECCcc
Confidence            456789999999998 4555 5699999999888765432221    24579999999999999999998754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-13  Score=81.62  Aligned_cols=70  Identities=21%  Similarity=0.387  Sum_probs=55.6

Q ss_pred             cccccCCeEEEEEEe-----eCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         19 RTLNVGERASLICSI-----TKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..+..|+...|.|..     ..+.|.+.+.|+++|.++..........    ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV----KDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE----TTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec----CCEEEEcccccccCcEEEEEEEECcCC
Confidence            347789999999941     1478888999999999997654432221    467999999999999999999987764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-13  Score=80.07  Aligned_cols=78  Identities=22%  Similarity=0.411  Sum_probs=60.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe-eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+..|+++.|.|.+ . .|.+.+.|++++..+...... .....++....|.|.++..+|+|.|+|.|.|.    ..++
T Consensus        10 ~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~a   83 (90)
T d1x44a1          10 TTAYCGERVELECEV-S-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----QSSA   83 (90)
T ss_dssp             EEEETTEEEEEEEEC-S-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----EEEE
T ss_pred             EEEeCCCcEEEEEEE-C-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----eEEE
Confidence            567899999999998 4 477899999999988765442 22333445678999999999999999999773    4556


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        84 ~l~V~   88 (90)
T d1x44a1          84 KLSVD   88 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6e-14  Score=85.02  Aligned_cols=80  Identities=18%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC--CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+|+.+.|.|.+..+.|.+.+.|++++..+....  ......   ..+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~   90 (101)
T d1iray1          14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ---HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS   90 (101)
T ss_dssp             EETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE---ETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec---cCCEEEeccceecCCEEEEEEEECCCCeEEEEEE
Confidence            45799999999886678999999999886554221  111111   1357999999999999999999999999999999


Q ss_pred             EEEEe
Q psy11132        195 LQVKG  199 (243)
Q Consensus       195 l~v~~  199 (243)
                      |.|..
T Consensus        91 L~V~~   95 (101)
T d1iray1          91 AKFVE   95 (101)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99883

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=9e-14  Score=83.90  Aligned_cols=75  Identities=25%  Similarity=0.460  Sum_probs=59.1

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeEEEE
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQ  196 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~l~  196 (243)
                      .|+++.|.|.+ .|.|.+.+.|+++|..+............  ...|.|..+..+|+|.|+|.|.|..|... ..+.|.
T Consensus        21 ~~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          21 AEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             SCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeee--eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            46899999999 58999999999999998765544333322  35688888889999999999999999763 355553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.3e-14  Score=82.87  Aligned_cols=77  Identities=22%  Similarity=0.239  Sum_probs=58.1

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ   97 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   97 (243)
                      +..+.+|+++.|.|.+. + +++.+.|+++|..+.........   ..+..|.|.+++.+|+|.|+|.|.|..+......
T Consensus         6 ~~~~~~G~~~~l~C~~~-g-~~~~v~W~~~g~~l~~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           6 QHFFKHGGTAELKCSQK-S-NLARVFWKFQNGVLKAESPKYGL---MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEETTSCEEECCCCS-C-TTCEEEEEESSSBCCCCSSSBCC---TTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             heeEeCCCEEEEEEEee-c-cCCceeeecCcccceeeeeeeec---ceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            35689999999999995 5 55699999999887654321111   1245799999999999999999999887655444


Q ss_pred             EE
Q psy11132         98 RL   99 (243)
Q Consensus        98 ~l   99 (243)
                      .+
T Consensus        81 ~l   82 (92)
T d1olza1          81 VV   82 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9e-14  Score=85.12  Aligned_cols=84  Identities=11%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ..+.+|+.++|.|.+.++.|  .+++.|++++..+.......... .....+.|.+.....+|.|.|+|.|.|..+....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            55778999999999965554  45899999999876432211111 1222456777776777788999999999987766


Q ss_pred             eEEEEEE
Q psy11132        192 SSKLQVK  198 (243)
Q Consensus       192 ~~~l~v~  198 (243)
                      .+.+.+.
T Consensus        92 ~~~~~~s   98 (106)
T d1zxqa1          92 NIFHKHS   98 (106)
T ss_dssp             CEEEEEC
T ss_pred             eeEeccc
Confidence            6666555

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-14  Score=87.53  Aligned_cols=83  Identities=18%  Similarity=0.297  Sum_probs=60.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-------ccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-------DSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+...........       ....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        14 v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          14 VRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             CCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             EEEeCCCeEEEEEEe-CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            557789999999999 5999999999987543321111000000       00135799999999999999999999999


Q ss_pred             ceeeeEEEEEE
Q psy11132        188 QARYSSKLQVK  198 (243)
Q Consensus       188 ~~~~~~~l~v~  198 (243)
                      .....+.+.|.
T Consensus        93 ~~~~~~~v~v~  103 (105)
T d1nbqa1          93 NSYGEVKVKLI  103 (105)
T ss_dssp             SCEECCEEECC
T ss_pred             CEEEEEEEEEE
Confidence            98777666553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-13  Score=82.28  Aligned_cols=71  Identities=28%  Similarity=0.416  Sum_probs=56.7

Q ss_pred             CCCCCCcEEEEE------EeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        116 GLPEGARTRVIC------GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       116 ~~~~g~~~~l~C------~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+..|....|.|      .+ .+.|.|.+.|+++|..+..........    ...|.|.++..+|+|.|+|.|.|..|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kdg~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKDCKPLLLDNIHFSGV----KDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCB-TTTBCCCCEEEETTEECCCCSSSEEEE----TTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEecCCCEEEEcCCcccccc-CCCCCCEEEEEECCccccCCCcEEEec----CCEEEEcccccccCcEEEEEEEECcCCE
Confidence            456899999999      45 688999999999999997654332222    3569999999999999999999988754


Q ss_pred             ee
Q psy11132        190 RY  191 (243)
Q Consensus       190 ~~  191 (243)
                      ..
T Consensus        85 ~~   86 (103)
T d1iray2          85 QY   86 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-13  Score=81.11  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+ .| |++.+.|+++|..+..........   ....|.|.++..+|+|.|+|.|.|..|.......
T Consensus         7 ~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           7 HFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKAESPKYGLM---GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCCCSSSBCCT---TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             eeEeCCCEEEEEEEe-ec-cCCceeeecCcccceeeeeeeecc---eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            346789999999999 56 667999999998887654322221   1346999999999999999999999887665544


Q ss_pred             EEE
Q psy11132        195 LQV  197 (243)
Q Consensus       195 l~v  197 (243)
                      +.+
T Consensus        82 l~~   84 (92)
T d1olza1          82 VAK   84 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=7.8e-14  Score=85.07  Aligned_cols=83  Identities=19%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC---CeeEEe----eccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF---PVNVSD----LDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..+.+|+++.|.|.+ .|.|.+.+.|++++.......   ......    .....+.|.|.+++.+|+|.|.|.|.|..|
T Consensus        11 v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g   89 (102)
T d1f97a1          11 VQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (102)
T ss_dssp             EEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             EEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCC
Confidence            456789999999999 589999999998543221100   000000    001135699999999999999999999999


Q ss_pred             ceeeeEEEEEE
Q psy11132        188 QARYSSKLQVK  198 (243)
Q Consensus       188 ~~~~~~~l~v~  198 (243)
                      .....+.+.|.
T Consensus        90 ~~~~~~~v~v~  100 (102)
T d1f97a1          90 QNYGEVSIHLT  100 (102)
T ss_dssp             SSEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            88777666554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.7e-13  Score=82.92  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=60.1

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCC--CceeEEEECCeeecCCCceEEEEe-eeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDI--PLTIKWLKDGRYLDNSAALSITHV-DQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      +......+.+|+.++|.|.+.++.|  .+.++|++++..+........... ......|.+.....+|.|.|+|.|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3455567889999999999976654  348999999998854322111111 1123567777777777889999999987


Q ss_pred             CcceeEEEEEEE
Q psy11132         91 AEDTQVQRLIVN  102 (243)
Q Consensus        91 ~~~~~~~~l~v~  102 (243)
                      +.....+.+.+.
T Consensus        87 ~~~~~~~~~~~s   98 (106)
T d1zxqa1          87 MSRGGNIFHKHS   98 (106)
T ss_dssp             GGGTCCEEEEEC
T ss_pred             CCCCCeeEeccc
Confidence            765544445543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.37  E-value=4.4e-13  Score=78.57  Aligned_cols=70  Identities=21%  Similarity=0.369  Sum_probs=54.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+.++|.|.+. +.|. ..+.|+++|..+...           +..|.|..+..+|+|.|.|.|.|..++.  .+
T Consensus        14 ~~v~~G~~v~L~C~~~-~~~~~~~~~w~~~g~~~~~~-----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~--~v   79 (85)
T d2fcba1          14 INVLQEDSVTLTCRGT-HSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEYTCQTGQTSLSD--PV   79 (85)
T ss_dssp             SEEETTCEEEEEEECS-SCCCTTCCEEEETTEECTTC-----------CSSEEEEECCGGGCEEEEEECTTSBCCC--CE
T ss_pred             eEEcCCCeEEEEEEEe-eccceeEEEeeccccccccc-----------ccceEEeeccccCCcEEEEECCCCcccc--cE
Confidence            5678999999999994 6654 478999999988654           3458899999999999999998865543  34


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        80 ~l~V~   84 (85)
T d2fcba1          80 HLTVL   84 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=1e-13  Score=82.10  Aligned_cols=77  Identities=19%  Similarity=0.354  Sum_probs=62.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  194 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  194 (243)
                      ..+.+|+++.|.|.+  +.|.+.+.|+++|..+.....+.+.. .+....|.|.++..+|+|.|+|.|.|.    ..++.
T Consensus        11 ~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~sa~   83 (89)
T d1tiua_          11 VEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIE-DGKKHILILHNCQLGMTGEVSFQAANA----KSAAN   83 (89)
T ss_dssp             EEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEE-CSSCEEEECCSCCSCCCSEECCBCSSC----BCCEE
T ss_pred             EEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEe-eceeEEEEEcCCChhcCEEEEEEECce----EEEEE
Confidence            567899999999997  36888999999999998877766654 345678999999999999999998774    34556


Q ss_pred             EEEE
Q psy11132        195 LQVK  198 (243)
Q Consensus       195 l~v~  198 (243)
                      |.|.
T Consensus        84 l~V~   87 (89)
T d1tiua_          84 LKVK   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6e-13  Score=77.38  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=51.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  193 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  193 (243)
                      ..+.+|+++.|.|.+ .+.|.+ .+.|++++..+...           ...|.|.+++.+|+|.|.|.|.|..++.  .+
T Consensus        11 ~~v~~G~~v~L~C~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v   76 (82)
T d1f2qa1          11 NRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQQVNESE--PV   76 (82)
T ss_dssp             SEEETTCCEEEECCT-TCC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECTTSSCCC--CE
T ss_pred             eEEeCCCeEEEEEEE-eeeeeecceeeeeeeeeeecc-----------cceeEECCCChhhCCcEEEEecCCCCcc--cE
Confidence            557889999999999 577765 45678888877643           3569999999999999999998865543  45


Q ss_pred             EEEEE
Q psy11132        194 KLQVK  198 (243)
Q Consensus       194 ~l~v~  198 (243)
                      .|.|.
T Consensus        77 ~l~V~   81 (82)
T d1f2qa1          77 YLEVF   81 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.31  E-value=7.6e-13  Score=81.49  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE---EeeeeceEEEEeecCCCCCe---eEEEEEEeCCC
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT---HVDQYNSMLVIDSVSARHSG---NYSCTVRNMVA   91 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~   91 (243)
                      +.++.||+++.|.|.+..|.|.+.+.|++++..+.........   .......+|.|.+++..|+|   .|.|.|.|..+
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            3457899999999997558999999999987765432211111   11112567999999999877   69999999998


Q ss_pred             cceeEEEEEE
Q psy11132         92 EDTQVQRLIV  101 (243)
Q Consensus        92 ~~~~~~~l~v  101 (243)
                      .....+.+.+
T Consensus        91 ~~~~~~~~~~  100 (111)
T d1biha2          91 DEEVVLVEYE  100 (111)
T ss_dssp             SSCEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            8765554444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.30  E-value=1.3e-12  Score=76.32  Aligned_cols=62  Identities=19%  Similarity=0.362  Sum_probs=49.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..+.+|++++|.|.+ .+.|.+ .+.|++++..+...           ...|.|.++..+|+|.|+|.|.|..++
T Consensus        15 ~~v~~G~~vtL~C~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          15 YSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             SEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             cEEeCCCeEEEEEEe-ccCCCCeEEEEeeeceeeeec-----------ceeeEecCCcccCCEEEEEEccCCCcc
Confidence            567899999999999 576665 56678888776533           356999999999999999999876544

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.27  E-value=8.7e-13  Score=81.21  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE---eeccceeEEEEeecCCCCCe---eEEEEEEccCcce
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS---DLDSFSSLLSINSVSAAHSG---EYTCVASNTAAQA  189 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g---~y~C~~~n~~g~~  189 (243)
                      .+.+|+++.|.|.+..|.|.|.+.|++++..+.........   ........|.|.+++.+|+|   .|.|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            45689999999997569999999999987665432211110   01112456999999988776   7999999999988


Q ss_pred             eeeEEEEEE
Q psy11132        190 RYSSKLQVK  198 (243)
Q Consensus       190 ~~~~~l~v~  198 (243)
                      ...+.+.+.
T Consensus        93 ~~~~~~~~i  101 (111)
T d1biha2          93 EVVLVEYEI  101 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            766544443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.5e-11  Score=77.75  Aligned_cols=88  Identities=20%  Similarity=0.318  Sum_probs=60.8

Q ss_pred             CcccccCCeEEEEEEeeC--CCCCceeEEEECCeee-----------c------CCCceEEEEe--eeeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITK--GDIPLTIKWLKDGRYL-----------D------NSAALSITHV--DQYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~~~~-----------~------~~~~~~~~~~--~~~~~~l~i~~~~~   76 (243)
                      .+.+.+|++++|.|.+..  ......+.|++.+...           .      ...+......  ..++.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            467889999999998752  2233479999864321           0      0112222111  22357899999999


Q ss_pred             CCCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132         77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPP  105 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p  105 (243)
                      +|+|.|.|.+.+..+..+..+.|.|.+|.
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            99999999999887777888889998653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.5e-12  Score=74.41  Aligned_cols=80  Identities=13%  Similarity=0.064  Sum_probs=55.3

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE---------EeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT---------HVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ++...+|++|+|.|.+  ..|...+.|++++..+.........         ......++|+|.+++.+|+|.|.|.+.+
T Consensus         4 ~v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            4567899999999986  4567799999998765321110000         1112356899999999999999999976


Q ss_pred             CCCcceeEEEEEE
Q psy11132         89 MVAEDTQVQRLIV  101 (243)
Q Consensus        89 ~~~~~~~~~~l~v  101 (243)
                      ..+..  .+.|.|
T Consensus        82 ~~~t~--~~~l~V   92 (93)
T d1ccza1          82 ITDTM--KFFLYV   92 (93)
T ss_dssp             CCSCE--EEEEEE
T ss_pred             CCcEE--EEEEEE
Confidence            55433  455554

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=3.9e-11  Score=71.91  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             cccccCCeEEEEEEeeCCCC-CceeEEEECCeeecC---CCceEEE---EeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         19 RTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDN---SAALSIT---HVDQYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~---~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +....|++|+|.|....... ...|.|++++..+..   .......   .....+++|+|.+++.+|+|.|+|.+.+..+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            45678999999996422323 347999998876531   1111000   0111257899999999999999999998888


Q ss_pred             cc--eeEEEEEEE
Q psy11132         92 ED--TQVQRLIVN  102 (243)
Q Consensus        92 ~~--~~~~~l~v~  102 (243)
                      ..  ...+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            75  567777775

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.8e-11  Score=70.66  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCee---------EEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN---------VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ...|++++|.|.+  +.|.+.+.|++++..+.......         .......++.|.|.+++.+|+|.|.|.|.|..+
T Consensus         7 ~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1           7 GVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             EETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             EEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc
Confidence            4679999999986  45888999999887653211100         011122346799999999999999999988766


Q ss_pred             cee
Q psy11132        188 QAR  190 (243)
Q Consensus       188 ~~~  190 (243)
                      +.+
T Consensus        85 t~~   87 (93)
T d1ccza1          85 TMK   87 (93)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            554

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.2e-10  Score=68.04  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+.. .|..|++|+|.|..  ..+...+.|++++....................+.|.+++..|+|.|+|...
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            35777766654 58899999999986  3455689999876432211111111112224678999999999999999988


Q ss_pred             eCCCc--ceeEEEEEE
Q psy11132         88 NMVAE--DTQVQRLIV  101 (243)
Q Consensus        88 ~~~~~--~~~~~~l~v  101 (243)
                      ++..-  .+..+.|.|
T Consensus        83 ~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          83 IGHYRFRYSDTLELVV   98 (99)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCcccCCCCCEEEEe
Confidence            76542  344455554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=7.9e-10  Score=69.57  Aligned_cols=84  Identities=18%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             CCCCCCCcEEEEEEeecC--CCCCEEEEEeCCEec-----------C----CC--CCeeEEe--eccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHG--DPPLTIRWLKDGKPL-----------S----PR--FPVNVSD--LDSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~~~~-----------~----~~--~~~~~~~--~~~~~~~l~i~~~~~~  173 (243)
                      ..+..|++++|.|.+...  .....+.|++.+...           .    ..  .+.....  .......|.|.+++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            345689999999987422  234579999864311           0    00  0111111  1223578999999999


Q ss_pred             CCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        174 HSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       174 d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |+|.|.|.+.+..+.....+.|.|.
T Consensus        92 D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCeEEEEEEEECCCEEEEEEEEEEe
Confidence            9999999999998888888899998

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7e-10  Score=69.58  Aligned_cols=85  Identities=22%  Similarity=0.321  Sum_probs=56.9

Q ss_pred             CcccccCCeEEEEEEeeCCCC---CceeEEEECCeee----------------c-----CCCceEEEEe--eeeceEEEE
Q psy11132         18 ERTLNVGERASLICSITKGDI---PLTIKWLKDGRYL----------------D-----NSAALSITHV--DQYNSMLVI   71 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~----------------~-----~~~~~~~~~~--~~~~~~l~i   71 (243)
                      .+.+.+|++++|+|.+.....   ...+.|++.....                .     ...+..+...  ..+..+|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            466789999999999853222   2468998731110                0     0112222211  123468999


Q ss_pred             eecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132         72 DSVSARHSGNYSCTVRNMVAEDTQVQRLIVN  102 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  102 (243)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999887777777777764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=3.2e-10  Score=68.93  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             ccccCCeEEEEEEeeCCCCCceeEEEECCeeecC-------------------CCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDN-------------------SAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .+.+|++|.|.|... ......+.|+|+......                   ..|..+    ..+.+|.|.+++.+|+|
T Consensus        10 ~v~~G~~V~L~c~~~-p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l----~~ngSL~I~~v~~~D~G   84 (107)
T d1l6za1          10 QVAEDNNVLLLVHNL-PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII----YSNGSLLFQMITMKDMG   84 (107)
T ss_dssp             SCCTTCCEEEEEESC-CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE----CTTSCEEECSCCGGGCE
T ss_pred             cccCCCCEEEEecCC-CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE----cccccEEEcCCCchhCE
Confidence            366999999999853 333458999986532110                   112221    12578999999999999


Q ss_pred             eEEEEEEeCCCc-ceeEEEEEE
Q psy11132         81 NYSCTVRNMVAE-DTQVQRLIV  101 (243)
Q Consensus        81 ~Y~C~~~~~~~~-~~~~~~l~v  101 (243)
                      .|+|.+.+..+. ....+.|.|
T Consensus        85 ~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          85 VYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEECCCCEEEEEEEEEE
Confidence            999999876543 444555544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=7.6e-09  Score=63.49  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=52.1

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee-------------cCCCceEEEEee-eeceEEEEeecCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL-------------DNSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~-------------~~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..|..+.+.+|++++|.|.+........+.||+.  ++..             ....++.+.... .....|.|.+++.+
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            3456677999999999999854444557899972  2211             122344443322 23467999999999


Q ss_pred             CCeeEEEEEEeC
Q psy11132         78 HSGNYSCTVRNM   89 (243)
Q Consensus        78 d~G~Y~C~~~~~   89 (243)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (114)
T d3bp5a1          84 DSGIYLCGAISL   95 (114)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CCeEEEEEEEeC
Confidence            999999988754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.8e-10  Score=65.84  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee--e
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY--S  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~  192 (243)
                      ..+..|++++|.|..  ..+...+.|++++....................+.|.++...|+|.|.|...+.......  .
T Consensus        16 ~~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdp   93 (99)
T d1ucta1          16 PVIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT   93 (99)
T ss_dssp             SEEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred             CceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCC
Confidence            457789999999986  356779999987642221111111111223467899999999999999999987654333  3


Q ss_pred             EEEEE
Q psy11132        193 SKLQV  197 (243)
Q Consensus       193 ~~l~v  197 (243)
                      ++|.|
T Consensus        94 l~L~V   98 (99)
T d1ucta1          94 LELVV   98 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44444

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.5e-09  Score=67.57  Aligned_cols=79  Identities=22%  Similarity=0.438  Sum_probs=54.6

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec----------------------CCCceEEEEeee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD----------------------NSAALSITHVDQ   64 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------------------~~~~~~~~~~~~   64 (243)
                      +|.+...|..+.+.+|++++|.|.+. +.....+.|+|.  +..+.                      ...++.......
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~-~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEE-SCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEc-CccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            46677778888899999999999985 455567999972  22110                      011222222222


Q ss_pred             eceEEEEeecCCCCCeeEEEEEEe
Q psy11132         65 YNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus        65 ~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      ....|+|.+++.+|+|.|.|.+..
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEeC
Confidence            346899999999999999998763

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.3e-09  Score=63.51  Aligned_cols=89  Identities=15%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+...+.. .+..|++|+|.|..  ......+.|+++|..........  ........+.|.+++.+|+|.|+|..++
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~--~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPKP--PERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCSS--CTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEcc--CCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            4666666644 47799999999986  34456899999986432111000  0011135799999999999999999876


Q ss_pred             CCC--cceeEEEEEEE
Q psy11132         89 MVA--EDTQVQRLIVN  102 (243)
Q Consensus        89 ~~~--~~~~~~~l~v~  102 (243)
                      ...  ..+..+.|.|.
T Consensus        79 ~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          79 GELWSEPSNLLDLVVT   94 (95)
T ss_dssp             TTEECCCCCCEEEEEE
T ss_pred             CCCccCCCCCEEEEEe
Confidence            543  24555666654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=8.1e-10  Score=66.03  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             CCCCcEEEEEEeecC-CCCCEEEEEeCCEecCC---CCCeeE---EeeccceeEEEEeecCCCCCeeEEEEEEccCcce-
Q psy11132        118 PEGARTRVICGVTHG-DPPLTIRWLKDGKPLSP---RFPVNV---SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-  189 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~---~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-  189 (243)
                      ..|+++.|.|..... .....+.|++++..+..   ......   ......++.|.|.+++.+|+|.|+|.+.+..|.. 
T Consensus         8 ~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~   87 (98)
T d1hnga1           8 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRI   87 (98)
T ss_dssp             ETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEE
T ss_pred             ecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEE
Confidence            469999999953222 23357999998876531   100000   0001124569999999999999999999998876 


Q ss_pred             -eeeEEEEEE
Q psy11132        190 -RYSSKLQVK  198 (243)
Q Consensus       190 -~~~~~l~v~  198 (243)
                       ...+.|.|.
T Consensus        88 ~~~~~~L~V~   97 (98)
T d1hnga1          88 LNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             455666664

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.5e-09  Score=66.17  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCC--CceeEEEECCe--e---e---------cCCCceEEEE-eeeeceEEEEeecCCC
Q psy11132         15 TNPERTLNVGERASLICSITKGDI--PLTIKWLKDGR--Y---L---------DNSAALSITH-VDQYNSMLVIDSVSAR   77 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~--~---~---------~~~~~~~~~~-~~~~~~~l~i~~~~~~   77 (243)
                      .|+.+.+.+|++|+|+|....+..  ...+.|+|...  .   +         ....+..+.. ......+|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            456778899999999998742221  23678987421  1   1         1122333322 2233478999999999


Q ss_pred             CCeeEEEEEEeCCCcceeEEEEEEEcC
Q psy11132         78 HSGNYSCTVRNMVAEDTQVQRLIVNVP  104 (243)
Q Consensus        78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~  104 (243)
                      |+|.|.|.+..........+.|.|.+.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            999999988654444445567777653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.84  E-value=2.2e-08  Score=61.62  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=53.7

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee---------------cCCCceEEEEee-eeceEEEEee
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL---------------DNSAALSITHVD-QYNSMLVIDS   73 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~---------------~~~~~~~~~~~~-~~~~~l~i~~   73 (243)
                      +...+..+.+.+|++++|.|..........+.||+.  +...               ....++...... .....|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            344566777999999999998864445568999972  2211               012244333222 2236899999


Q ss_pred             cCCCCCeeEEEEEEeCCC
Q psy11132         74 VSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        74 ~~~~d~G~Y~C~~~~~~~   91 (243)
                      ++.+|+|.|.|.+.....
T Consensus        83 ~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             CCGGGCEEEEEEEECTTT
T ss_pred             ccccccccceeeEecCCC
Confidence            999999999998875443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9e-09  Score=63.17  Aligned_cols=76  Identities=18%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---e---------------cCCCceEEEEeeeeceEEEE
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---L---------------DNSAALSITHVDQYNSMLVI   71 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~---------------~~~~~~~~~~~~~~~~~l~i   71 (243)
                      +...|...++.+|++|+|.|.+........+.|||..  ..   +               ....++...... ....|+|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~-~~~~L~I   81 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG-DTFVLTL   81 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET-TEEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC-CChhcEE
Confidence            4455777889999999999998644444578999832  11   1               011233333322 2568999


Q ss_pred             eecCCCCCeeEEEEEEe
Q psy11132         72 DSVSARHSGNYSCTVRN   88 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~   88 (243)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999998874

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.1e-08  Score=62.25  Aligned_cols=93  Identities=17%  Similarity=0.263  Sum_probs=56.9

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCc--eeEEEECCeeecCCCceEEE---EeeeeceEEEEeecCCCCCe-eE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSIT---HVDQYNSMLVIDSVSARHSG-NY   82 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G-~Y   82 (243)
                      +|.+....   .+.+|+.++|.|.+.++.|..  .+.|++++..+.........   ......+.|++. .+++|.| .|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~l   79 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVL   79 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEE
Confidence            35555432   377999999999998777854  79999999876432111000   001113456665 4455555 89


Q ss_pred             EEEEEeCCCcc-------eeEEEEEEEcCC
Q psy11132         83 SCTVRNMVAED-------TQVQRLIVNVPP  105 (243)
Q Consensus        83 ~C~~~~~~~~~-------~~~~~l~v~~~p  105 (243)
                      +|.|.+..+..       .....|.|.++|
T Consensus        80 tC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          80 VCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            99999876431       234456676654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.81  E-value=9e-09  Score=63.22  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=51.8

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---e---------cCCCceEEEE-eeeeceEEEEeecCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---L---------DNSAALSITH-VDQYNSMLVIDSVSAR   77 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~---------~~~~~~~~~~-~~~~~~~l~i~~~~~~   77 (243)
                      ...|..+.+.+|++++|.|... ......+.||+..  ..   +         ....++.... ......+|+|.+++.+
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~-~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYT-VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEEC-CSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEc-CCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            3446677789999999999985 4455689999732  11   1         0112222221 1223578999999999


Q ss_pred             CCeeEEEEEEeCC
Q psy11132         78 HSGNYSCTVRNMV   90 (243)
Q Consensus        78 d~G~Y~C~~~~~~   90 (243)
                      |+|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.1e-08  Score=62.36  Aligned_cols=73  Identities=19%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCC--EEEEEeCCEecCCCCCeeEE---eeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        116 GLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVS---DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .+.+|+.++|.|.+.++.|.+  .+.|++++..+.........   ......+.|.+.....++...|+|.|.+..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            467899999999998788854  78999998876532111100   11111345666543444445899999988754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.1e-08  Score=59.61  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             CcccccCCeEEEEEEeeCCCC-CceeEEEECC--ee---e---------cCCCceEEEE-eeeeceEEEEeecCCCCCee
Q psy11132         18 ERTLNVGERASLICSITKGDI-PLTIKWLKDG--RY---L---------DNSAALSITH-VDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~---~---------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~   81 (243)
                      .+.+.+|++++|.|....... ...+.|+|..  ..   +         ....+..... ......+|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            456789999999998753322 3367899732  11   1         1122333322 22345789999999999999


Q ss_pred             EEEEEEeCCC
Q psy11132         82 YSCTVRNMVA   91 (243)
Q Consensus        82 Y~C~~~~~~~   91 (243)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9999875443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-09  Score=64.05  Aligned_cols=69  Identities=22%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             cccccCCeEEEEEEeeCCCCCceeEEEECCee--ecC------------CCceEEE--EeeeeceEEEEeecCCCCCeeE
Q psy11132         19 RTLNVGERASLICSITKGDIPLTIKWLKDGRY--LDN------------SAALSIT--HVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--~~~------------~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      +...+|++|+|+|... ......+.|++....  +..            ..+....  ....++.+|+|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCS-SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEe-cCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            4567899999999985 555568999985432  110            1111111  1112245799999999999999


Q ss_pred             EEEEEe
Q psy11132         83 SCTVRN   88 (243)
Q Consensus        83 ~C~~~~   88 (243)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999854

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.77  E-value=2.5e-08  Score=60.73  Aligned_cols=74  Identities=19%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec----------CCCceEEE-EeeeeceEEEEeecCCCCCeeE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD----------NSAALSIT-HVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |..+.+.+|++++|.|..........+.||+.  ++.+.          ...+.... ........|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            34567889999999999753344456899983  22110          01111111 1122357899999999999999


Q ss_pred             EEEEEeC
Q psy11132         83 SCTVRNM   89 (243)
Q Consensus        83 ~C~~~~~   89 (243)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9988654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1e-08  Score=62.12  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=52.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCC--------CCCeeE-------EeeccceeEEEEeecCCCCCeeEEE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--------RFPVNV-------SDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--------~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      .+.+|+++.|.|... ......+.|+|+......        ......       ...-..++.|.|.+++.+|+|.|+|
T Consensus        10 ~v~~G~~V~L~c~~~-p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHNL-PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEESC-CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cccCCCCEEEEecCC-CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            457899999999753 333678999986542110        000000       0000124679999999999999999


Q ss_pred             EEEccCc-ceeeeEEEEE
Q psy11132        181 VASNTAA-QARYSSKLQV  197 (243)
Q Consensus       181 ~~~n~~g-~~~~~~~l~v  197 (243)
                      .+.+..+ ....++.|.|
T Consensus        89 ~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          89 DMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEETTEEECCCCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            9988764 4556666654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=2e-08  Score=61.49  Aligned_cols=79  Identities=24%  Similarity=0.400  Sum_probs=52.9

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEe-eeeceEEEEeecCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      +...|..+.+.+|+.++|.|.+. ......+.|||.  ++..            ....+...... ......|.|.+++.
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s-~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFT-DSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEES-CCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEe-cCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            34456677789999999999985 445557999983  2211            01112222211 12357899999999


Q ss_pred             CCCeeEEEEEEeCCC
Q psy11132         77 RHSGNYSCTVRNMVA   91 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~   91 (243)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          82 GDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGCEEEEEEEEESSS
T ss_pred             CCCcEEeEeEecCCC
Confidence            999999999875543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.3e-08  Score=57.42  Aligned_cols=73  Identities=21%  Similarity=0.331  Sum_probs=51.8

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +.+|.+...+. ..|..|++|+|.|..  ......+.|+|+|.....     ..........+.|.+++.+|+|.|+|..
T Consensus         2 ypkPsLsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           2 YDTPTLSVHPG-PEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             SCCCEEEEESC-SEEETTCEEEEEEEC--SSSCSEEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCCEEEEeCC-CcccCCCcEEEEECC--CCCCCEEEEEECCCccce-----eecCCCceeEEEecccChhcCceEEEEe
Confidence            35677776664 448889999999996  345568999998753221     1111223567999999999999999975


Q ss_pred             E
Q psy11132         87 R   87 (243)
Q Consensus        87 ~   87 (243)
                      .
T Consensus        74 ~   74 (93)
T d1olla2          74 S   74 (93)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=1.9e-08  Score=61.72  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec-------------CCCceEEEEe-eeeceEEEEeecCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD-------------NSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ...+..+.+.+|++|+|.|..........+.||+.  +..+.             ...+...... ......|.|.+++.
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            44456677999999999998754444456899982  22110             0111122111 12246899999999


Q ss_pred             CCCeeEEEEEEeCC
Q psy11132         77 RHSGNYSCTVRNMV   90 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~   90 (243)
                      +|+|.|.|.+....
T Consensus        84 ~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          84 VDSAVYFCALSGFY   97 (114)
T ss_dssp             GGCEEEEEEEECSB
T ss_pred             ccCCCceEeCCCCC
Confidence            99999999876543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.75  E-value=9.8e-09  Score=63.20  Aligned_cols=73  Identities=21%  Similarity=0.360  Sum_probs=48.9

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC-----Ceee------c-----------CCCceEEEE-eeeeceEEEE
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD-----GRYL------D-----------NSAALSITH-VDQYNSMLVI   71 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-----~~~~------~-----------~~~~~~~~~-~~~~~~~l~i   71 (243)
                      .|....+.+|++++|.|.+........+.||+.     ++.+      .           ...+..... .......|+|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            355667899999999999854344557999973     2211      0           011222222 2233568999


Q ss_pred             eecCCCCCeeEEEEEE
Q psy11132         72 DSVSARHSGNYSCTVR   87 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~   87 (243)
                      .+++.+|+|.|.|.+.
T Consensus        84 ~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          84 MNVKPEDSDFYFCATV   99 (115)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCCcEEEEeEc
Confidence            9999999999999875

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.74  E-value=2.5e-08  Score=61.33  Aligned_cols=79  Identities=15%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec-------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD-------------NSAALSITHV-DQYNSMLVIDSVS   75 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~-~~~~~~l~i~~~~   75 (243)
                      +...+..+.+.+|++|+|.|..........+.|||.  +..+.             ...++.+... ......|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            344566778999999999998754444557899983  22110             0122333222 2224689999999


Q ss_pred             CCCCeeEEEEEEeCC
Q psy11132         76 ARHSGNYSCTVRNMV   90 (243)
Q Consensus        76 ~~d~G~Y~C~~~~~~   90 (243)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999887543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.73  E-value=4.8e-08  Score=58.90  Aligned_cols=73  Identities=14%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++|+|.|... ......+.||+.  |...            ....++.... ......|+|.+++.+|+
T Consensus         5 QsP~~l~~~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKAS-QDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG-SGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEECSCCGGGC
T ss_pred             CcCCEEEECCCCCEEEEEEcC-CCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec-CCCEeeeEehhhcccCC
Confidence            335566788999999999874 444446999983  2111            0122333332 22357899999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.8e-08  Score=62.48  Aligned_cols=88  Identities=19%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCCCcccccCCeEEEEEEeeCC---CCCceeEEEECC--e----ee---------c-C----CCceEEEE-eeeeceEEE
Q psy11132         15 TNPERTLNVGERASLICSITKG---DIPLTIKWLKDG--R----YL---------D-N----SAALSITH-VDQYNSMLV   70 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~---~~~~~v~W~~~~--~----~~---------~-~----~~~~~~~~-~~~~~~~l~   70 (243)
                      .+.++.+..|++++|.|.+...   .....+.|++..  .    .+         . .    ..+..+.. ....+.+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            3556778899999999987532   223489998721  1    01         0 0    12222221 122346899


Q ss_pred             EeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEE
Q psy11132         71 IDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVN  102 (243)
Q Consensus        71 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~  102 (243)
                      |.+++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999999875443  3344566554

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.73  E-value=3.6e-08  Score=59.99  Aligned_cols=76  Identities=17%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ce----eecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEE
Q psy11132         14 PTNPERTLNVGERASLICSITKGD-IPLTIKWLKD--GR----YLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~----~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      ..|..+.+.+|+.++|.|.+.+.. ....+.||+.  |+    .+....++...... .....|+|.+++.+|+|.|.|.
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   83 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCG   83 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEE
Confidence            345566788999999999875332 3457999972  21    22233344333222 2246899999999999999998


Q ss_pred             EEeC
Q psy11132         86 VRNM   89 (243)
Q Consensus        86 ~~~~   89 (243)
                      +...
T Consensus        84 ~~~~   87 (112)
T d1sq2n_          84 LGVA   87 (112)
T ss_dssp             ECBT
T ss_pred             EecC
Confidence            7643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.72  E-value=4.9e-08  Score=59.66  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Cee----ecCCCceEEEEee-eeceEEEEeecCCCCCeeEEE
Q psy11132         13 SPTNPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRY----LDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~----~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      ...|..+.+.+|++++|+|.++... ....+.||+.  +..    +....+....... .....|+|.+++.+|+|.|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            3445667788999999999986432 3457899973  221    2223444333322 223689999999999999999


Q ss_pred             EEEe
Q psy11132         85 TVRN   88 (243)
Q Consensus        85 ~~~~   88 (243)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            8864

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=3.4e-08  Score=59.56  Aligned_cols=71  Identities=17%  Similarity=0.392  Sum_probs=48.8

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.||+.  |...            ....++..... .....|.|.+++.+|+|
T Consensus         7 sP~slsv~~G~svtl~C~~s-~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTS-TDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-GTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCE
T ss_pred             eCCEEEECCCCCEEEEEEeC-CCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCC-CCeeeecccCCccccCE
Confidence            35566788999999999875 334447999973  2211            12234443322 23578999999999999


Q ss_pred             eEEEEEE
Q psy11132         81 NYSCTVR   87 (243)
Q Consensus        81 ~Y~C~~~   87 (243)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (106)
T d1i8ka_          85 DYYCLQS   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EEeEecC
Confidence            9999765

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.6e-08  Score=59.74  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce--eee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYS  192 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~  192 (243)
                      ..+..|++++|.|..  ......+.|+++|.........  .........+.|.++..+|+|.|.|...+..+..  +..
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~   88 (95)
T d1olla1          13 FMVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL   88 (95)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCS--SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCC
T ss_pred             CcccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEc--cCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCC
Confidence            456789999999986  3457789999998643211000  0011224679999999999999999998866543  233


Q ss_pred             EEEEEE
Q psy11132        193 SKLQVK  198 (243)
Q Consensus       193 ~~l~v~  198 (243)
                      ++|.|.
T Consensus        89 leL~VT   94 (95)
T d1olla1          89 LDLVVT   94 (95)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555553

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.68  E-value=7.3e-08  Score=59.38  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec-----------------CCCceEEEEeeeeceEEEEeec
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD-----------------NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      ..|....+.+|++++|.|... +.....+.|||.  |+.+.                 ...++...........|.|.++
T Consensus         6 Q~P~~~~~~~G~~v~L~C~~~-~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   84 (118)
T d2ij0c1           6 QHPSMVIVKSGTSVKIECRSL-DTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA   84 (118)
T ss_dssp             EECSEEEECTTCCEEEEEEEC-SSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEc-CCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence            334556688999999999975 444558999983  22110                 1223333333333467999999


Q ss_pred             CCCCCeeEEEEEEeCC
Q psy11132         75 SARHSGNYSCTVRNMV   90 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~   90 (243)
                      +.+|+|.|.|.+....
T Consensus        85 ~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          85 HPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             ccccCceEEEEEecCC
Confidence            9999999999886543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.7e-08  Score=61.08  Aligned_cols=73  Identities=22%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             CcccccCCeEEEEEEeeCCCCC---ceeEEEECCeeecC------------CCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132         18 ERTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDN------------SAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .++...|+.++|+|........   ..+.|.+++..+..            ..+...  ...++.+|.|.+++.+|+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~--~~~g~~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF--DITNNLSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE--ESTTTTEEEECSCCGGGCEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee--ccCCcEEEEECcCChHHCeEE
Confidence            3567889999999987432222   36788887755310            112222  222357899999999999999


Q ss_pred             EEEEEeCCCc
Q psy11132         83 SCTVRNMVAE   92 (243)
Q Consensus        83 ~C~~~~~~~~   92 (243)
                      .|.+.+..+.
T Consensus        81 ~C~V~~~~~~   90 (105)
T d1dr9a1          81 ECVVLKYEKD   90 (105)
T ss_dssp             EEEEEECCTT
T ss_pred             EEEEEeCCCC
Confidence            9999865443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=4.7e-08  Score=59.01  Aligned_cols=73  Identities=18%  Similarity=0.339  Sum_probs=50.3

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++|+|.|... +.....+.||+.  +...            ....++.... ......|.|.+++.+|+
T Consensus         6 QsP~~ltv~~G~svtl~C~~s-~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~-~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKAS-EDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD-SGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-SSSSEEEEESSCCGGGC
T ss_pred             eeCCEEEECCCCCEEEEEecC-CCcccccEEEEcCCCccceeEEeeccccCCccccccceec-CCCeEEeEEcccccccC
Confidence            445667789999999999985 333347999983  2211            1123444332 23368999999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999997753

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.66  E-value=5.8e-08  Score=59.55  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=50.2

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEee-eeceEEEEeecCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..+..+.+.+|++++|.|... ......+.|||.  ++.+            ....++...... .....|.|.+++.+|
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~-~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQ-STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEE-CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEe-CCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            345556789999999999986 344557999983  2111            011222222111 224679999999999


Q ss_pred             CeeEEEEEEeCC
Q psy11132         79 SGNYSCTVRNMV   90 (243)
Q Consensus        79 ~G~Y~C~~~~~~   90 (243)
                      +|.|.|.+....
T Consensus        85 sg~YyCa~~~~~   96 (115)
T d1lp9e1          85 SALYYCALFLAS   96 (115)
T ss_dssp             CEEEEEEEEECS
T ss_pred             CccceEEEEcCC
Confidence            999999886543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.66  E-value=6e-08  Score=59.06  Aligned_cols=76  Identities=20%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEE-eeeeceEEEEeecCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITH-VDQYNSMLVIDSVSAR   77 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~~   77 (243)
                      ...|..+.+.+|++++|+|... ......+.||+.  +....            ...+..... .......|.|.+++.+
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~-~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYE-NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEEC-CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             EecCCEEEEcCCCCEEEEEEec-CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            3445667789999999999985 434447999973  22110            011111111 1122468999999999


Q ss_pred             CCeeEEEEEEeC
Q psy11132         78 HSGNYSCTVRNM   89 (243)
Q Consensus        78 d~G~Y~C~~~~~   89 (243)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (110)
T d1u3ha1          82 DSATYFCAASAN   93 (110)
T ss_dssp             SCSEEEECCEES
T ss_pred             CceeEeeeecCC
Confidence            999999987643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.1e-07  Score=56.51  Aligned_cols=85  Identities=16%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeee-ceEEEEeecCCCCCeeEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQY-NSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C   84 (243)
                      ..||.+.+.+.. ....|+.++|.|.+.+.+|. ..++|.++|..+.............+ ........+...+.+.|+|
T Consensus         2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            346666543222 24468889999999865564 58999999998865433222222211 1223333445666779999


Q ss_pred             EEEeCCCc
Q psy11132         85 TVRNMVAE   92 (243)
Q Consensus        85 ~~~~~~~~   92 (243)
                      .+.+....
T Consensus        81 ~V~H~sl~   88 (99)
T d1lk2b_          81 RVKHDSMA   88 (99)
T ss_dssp             EEECTTSS
T ss_pred             EEEeCCCC
Confidence            99876543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.66  E-value=1.1e-07  Score=56.48  Aligned_cols=78  Identities=19%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      +.+|.+...+.. .+..|++|+|.|..  ..+...+.|+|+|.........  .........+.|..++..|+|.|+|..
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSS--RSSYDMYHLSREGEAHERRLPA--GPKVNGTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEEEEC--EEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECC--CCCccEEEEEECCCccccEEEc--cccCCccEEEEEeccccccCEEEEEEe
Confidence            346777666644 57899999999986  4455689999998543221110  111112345677888889999999987


Q ss_pred             EeC
Q psy11132         87 RNM   89 (243)
Q Consensus        87 ~~~   89 (243)
                      ...
T Consensus        79 ~~~   81 (99)
T d1nkra2          79 SFH   81 (99)
T ss_dssp             EET
T ss_pred             ecC
Confidence            643

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.66  E-value=5.3e-08  Score=59.53  Aligned_cols=76  Identities=20%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------C----CCceE--EEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------N----SAALS--ITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------~----~~~~~--~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++++|.|... . ....+.||+.  +..+.      .    .....  ..........|+|.+++.+|+
T Consensus         6 Q~P~~~~v~~G~~vtl~C~~~-~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           6 QSPSALSLHEGTDSALRCNFT-T-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEES-S-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             ECCCEEEEcCCCCEEEEEEEe-c-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            345667788999999999985 3 3347899983  22110      0    00000  001112246899999999999


Q ss_pred             eeEEEEEEeCCC
Q psy11132         80 GNYSCTVRNMVA   91 (243)
Q Consensus        80 G~Y~C~~~~~~~   91 (243)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999998875443

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.65  E-value=2.6e-07  Score=56.22  Aligned_cols=71  Identities=20%  Similarity=0.396  Sum_probs=48.3

Q ss_pred             CCcccccCCeEEEEEEeeCCC-CCceeEEEECC--ee---e---------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         17 PERTLNVGERASLICSITKGD-IPLTIKWLKDG--RY---L---------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ..+.+.+|++++|.|.+.... ....+.||+..  ..   +         ....+..... ......|.|.+++.+|++.
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK-SGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC-CCCeeeeEecccCcccCce
Confidence            356788999999999975333 24578999832  11   1         0122333332 2335789999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|....
T Consensus        87 YyCA~~~   93 (114)
T d2rhea_          87 YYCAAWN   93 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecC
Confidence            9998764

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=6.5e-08  Score=58.27  Aligned_cols=72  Identities=21%  Similarity=0.384  Sum_probs=49.2

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.|||.  |..+            ....+..... ......|.|.+++.+|+|
T Consensus         7 ~P~s~~~~~G~svtl~C~~s-~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTS-QEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR-SGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCS
T ss_pred             cCCEEEECCCCCEEEEEEeC-CCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc-cCCEEEEEEhhhcccCCe
Confidence            35566788999999999985 444557999972  3221            1122333332 223578999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.3e-08  Score=57.54  Aligned_cols=86  Identities=14%  Similarity=0.300  Sum_probs=53.4

Q ss_pred             EecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeee-ceEEEEeecCCCCCeeEE
Q psy11132          6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQY-NSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~   83 (243)
                      +..||.+.+.+.. .+..|+.++|.|.+.+..|. ..++|.+||..+............++ ........+..++.+.|+
T Consensus         2 v~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~yt   80 (100)
T d1k5nb_           2 IQRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA   80 (100)
T ss_dssp             CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEE
T ss_pred             ccCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEE
Confidence            3456776654222 24678999999999865554 59999999998864332222222211 122333345566777999


Q ss_pred             EEEEeCCCc
Q psy11132         84 CTVRNMVAE   92 (243)
Q Consensus        84 C~~~~~~~~   92 (243)
                      |.+.+....
T Consensus        81 C~V~H~sl~   89 (100)
T d1k5nb_          81 CRVNHVTLS   89 (100)
T ss_dssp             EEEECTTCS
T ss_pred             EEEEeCCCC
Confidence            999976543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.65  E-value=7.6e-08  Score=56.69  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+...+ ...+..|++|+|.|..  ......+.++|+|....................+.|.+++.+|+|.|+|....
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            35555555 3458899999999997  34455888899875321111111111122246799999999999999998764


Q ss_pred             C
Q psy11132         89 M   89 (243)
Q Consensus        89 ~   89 (243)
                      .
T Consensus        79 ~   79 (96)
T d1nkra1          79 T   79 (96)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.5e-08  Score=56.29  Aligned_cols=75  Identities=23%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+|.+...+.. .+..|++|+|.|... ......+.|+|+|.......     ........+.|.+++.+|+|.|+|...
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~-~~~~~~f~L~k~g~~~~~~~-----~~~~~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSA-HIPFDRFSLAKEGELSLPQH-----QSGEHPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECS-SSCCSEEEEEETTCSSCCSE-----EECSSSEEEECCSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCC-CCCceEEEEEECCcccceEE-----cCCCcccEEEEeccccccCcEEEEEEE
Confidence            45667666644 588999999999852 33444789999985332211     112224679999999999999999886


Q ss_pred             eC
Q psy11132         88 NM   89 (243)
Q Consensus        88 ~~   89 (243)
                      ..
T Consensus        77 ~~   78 (96)
T d1ucta2          77 YN   78 (96)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.64  E-value=8.8e-08  Score=58.77  Aligned_cols=76  Identities=14%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e----------cCCCceEEEEe-eeeceEEEEeecCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L----------DNSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~----------~~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ...+..+.+.+|+.++|+|... ......+.||+.  ++.   +          ....+...... ......|+|.+++.
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYS-SSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeC-CCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            3445667799999999999986 444457999982  221   1          01112222211 12235799999999


Q ss_pred             CCCeeEEEEEEeC
Q psy11132         77 RHSGNYSCTVRNM   89 (243)
Q Consensus        77 ~d~G~Y~C~~~~~   89 (243)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.64  E-value=1.5e-07  Score=57.20  Aligned_cols=75  Identities=17%  Similarity=0.370  Sum_probs=49.9

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee-------------c--CCCceEEEEeeeeceEEEEeec
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL-------------D--NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~-------------~--~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +...|....+.+|++++|+|..+.+  ...+.|||.  |+..             .  ...+............|+|.++
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN--HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC--CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC--cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            3444566778999999999987532  347999982  2211             0  0112222222333578999999


Q ss_pred             CCCCCeeEEEEEEe
Q psy11132         75 SARHSGNYSCTVRN   88 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~   88 (243)
                      +.+|+|.|.|....
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.4e-08  Score=60.83  Aligned_cols=74  Identities=16%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             CCCcccccCCeEEEEEEeeCC---C---CCceeEEEECCeeec-----------------CCCceEEEEe-eeeceEEEE
Q psy11132         16 NPERTLNVGERASLICSITKG---D---IPLTIKWLKDGRYLD-----------------NSAALSITHV-DQYNSMLVI   71 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~---~---~~~~v~W~~~~~~~~-----------------~~~~~~~~~~-~~~~~~l~i   71 (243)
                      +..+++.+|+.|+|+|.++..   .   ....+.|++....-.                 ...+..+... ...+.+|+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456779999999999987421   1   124678987532210                 0123333221 233578999


Q ss_pred             eecCCCCCeeEEEEEEeC
Q psy11132         72 DSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        72 ~~~~~~d~G~Y~C~~~~~   89 (243)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.64  E-value=8.2e-08  Score=58.00  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.|||.  |..+            ....++.... ......|+|.+++.+|+|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRAS-QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCE
T ss_pred             cCCeEEECCCCCEEEEEEec-CCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc-cCCEEEEEEcccCcCCCE
Confidence            35567789999999999975 333447999973  2211            1123444333 233578999999999999


Q ss_pred             eEEEEEE
Q psy11132         81 NYSCTVR   87 (243)
Q Consensus        81 ~Y~C~~~   87 (243)
                      .|.|...
T Consensus        85 ~YyCa~~   91 (107)
T d1j1pl_          85 MYFCQQA   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.63  E-value=7.3e-08  Score=58.18  Aligned_cols=73  Identities=16%  Similarity=0.368  Sum_probs=50.0

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      ...|..+.+.+|++|+|.|... ......+.||+.  |..   +         ....++.... ......|+|.+++.+|
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRAS-QGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG-SGTEFTLTISTLRPED   82 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEEEC-CCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec-cCCEEEEEeccceeCc
Confidence            3446667788999999999985 334458899983  221   1         1122333332 2335789999999999


Q ss_pred             CeeEEEEEE
Q psy11132         79 SGNYSCTVR   87 (243)
Q Consensus        79 ~G~Y~C~~~   87 (243)
                      +|.|.|...
T Consensus        83 sA~YyCa~~   91 (107)
T d1tjgl1          83 FATYYCQQL   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CceEEEEEC
Confidence            999999765

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.62  E-value=9.7e-08  Score=58.17  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEE-eeeeceEEEEeecCC
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITH-VDQYNSMLVIDSVSA   76 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~   76 (243)
                      +...+..+.+.+|++++|.|... ......+.||+.  |+...            ...+..... .......|.|.+++.
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYT-NSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEEC-CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeC-CCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence            34456667789999999999875 334447899973  22110            111222221 122357999999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.62  E-value=6e-08  Score=58.76  Aligned_cols=73  Identities=21%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++++|.|..........+.||+.  +..   +         ....++..... .....|.|.+++.+|+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~-~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGS-GTDFTLTISRLEPEDF   84 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEESSCCGGGC
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecC-CCEEEEEehHheeccc
Confidence            3455677899999999998743333457899983  221   1         11223333222 2356899999999999


Q ss_pred             eeEEEEEE
Q psy11132         80 GNYSCTVR   87 (243)
Q Consensus        80 G~Y~C~~~   87 (243)
                      |.|.|.+.
T Consensus        85 a~YyCa~~   92 (108)
T d2fx7l1          85 AVYYCQQY   92 (108)
T ss_dssp             SEEEEEEC
T ss_pred             EEEeeecC
Confidence            99999765

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.62  E-value=1.1e-07  Score=56.45  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE--EEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS--ITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+.+.+.. .+..|+.++|.|.+.+..| ...++|+++|..+..+....  ....+..........+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            46766655332 2556889999999986555 46999999998876432111  11111111222223344566779999


Q ss_pred             EEEeCCC
Q psy11132         85 TVRNMVA   91 (243)
Q Consensus        85 ~~~~~~~   91 (243)
                      ++.+...
T Consensus        81 ~V~H~sl   87 (100)
T d1muja1          81 KVEHWGL   87 (100)
T ss_dssp             EEECTTS
T ss_pred             EEEECCC
Confidence            9997654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=1.5e-07  Score=56.82  Aligned_cols=72  Identities=19%  Similarity=0.375  Sum_probs=49.4

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++|+|.|... ......+.||+.  +...            ....+..... ......|+|.+++.+|+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKAS-ENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG-SATDFTLTISSVQADDD   83 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGC
T ss_pred             CcCCEEeECCCCCEEEEEEec-CCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec-cCCeeecEEHhheecCC
Confidence            345567788999999999985 334447999973  2111            0123333322 23367899999999999


Q ss_pred             eeEEEEEE
Q psy11132         80 GNYSCTVR   87 (243)
Q Consensus        80 G~Y~C~~~   87 (243)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=1.5e-07  Score=56.80  Aligned_cols=72  Identities=19%  Similarity=0.349  Sum_probs=47.6

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e-------c--CCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L-------D--NSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.||+.  +..   +       .  ........ .......|+|.+++.+|+|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           7 SPSYLVASPGETITINCRAS-KSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS-GSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-ESSSEEEEEECSCCTTCCS
T ss_pred             cCCeEEecCCCCEEEEEEcc-CCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc-CCCCEEEeEeeeeEeccce
Confidence            35556788999999999985 334447999973  111   1       0  11122222 2223568999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|....
T Consensus        85 ~YyCA~~~   92 (108)
T d1jhll_          85 MYICQQHN   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEeeCC
Confidence            99997553

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.61  E-value=1.1e-07  Score=57.33  Aligned_cols=72  Identities=17%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.||+.  ++.   +         ....++.... ......|.|.+++.+|+|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~-~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~-~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRAS-QSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG-SGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEEESCCGGGCS
T ss_pred             cCCeEEECCCCCEEEEEEeC-CCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec-cCCEEEEEEccccccCCC
Confidence            35667789999999999885 334446899973  211   1         1122444332 233578999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998763

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.60  E-value=2.1e-07  Score=56.64  Aligned_cols=71  Identities=15%  Similarity=0.312  Sum_probs=47.4

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec----------------CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD----------------NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      |....+.+|++++|.|... . ....+.|||.  |+.+.                ...++...........|+|.+++.+
T Consensus         6 P~~~~~~~G~svtl~C~~~-~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPI-S-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECC-T-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEEC-C-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            5556788999999999864 3 2347999973  22110                1122332222223468999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (111)
T d2esve1          84 DSGVYFCASSQ   94 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCceEEEeeeC
Confidence            99999998764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.58  E-value=4.2e-07  Score=53.84  Aligned_cols=71  Identities=20%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..|+..+|.|.+.+.+| ...++|+++|..+.......  ....++.........+..++.+.|+|.+....-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCC
Confidence            456888999999976666 67999999998886532211  112222222222223445667789999998643

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.8e-08  Score=60.49  Aligned_cols=83  Identities=20%  Similarity=0.327  Sum_probs=54.3

Q ss_pred             CCCCCCcEEEEEEeecCCC---CCEEEEEeCCEecC----------------C-----CCCeeEEe--eccceeEEEEee
Q psy11132        116 GLPEGARTRVICGVTHGDP---PLTIRWLKDGKPLS----------------P-----RFPVNVSD--LDSFSSLLSINS  169 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~----------------~-----~~~~~~~~--~~~~~~~l~i~~  169 (243)
                      .+.+|+++.|.|.......   ...+.|++......                .     ..+.....  .......|.|.+
T Consensus        15 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   94 (124)
T d1eaja_          15 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   94 (124)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcc
Confidence            4568999999999842211   24689986211100                0     01111111  112245799999


Q ss_pred             cCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132        170 VSAAHSGEYTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       170 ~~~~d~g~y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      ++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        95 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          95 LQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999988888777888775

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.5e-07  Score=56.72  Aligned_cols=69  Identities=25%  Similarity=0.455  Sum_probs=47.2

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      +.+.+.+|++++|.|... ......+.|||.  +..   +         ....++..... .....|.|.+++.+|+|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKAS-ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-GTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             SEEEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEeC-CCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecC-CCEEEeEECCcChhhCCCc
Confidence            346688999999999985 334457999973  211   1         11233433332 2357899999999999999


Q ss_pred             EEEEE
Q psy11132         83 SCTVR   87 (243)
Q Consensus        83 ~C~~~   87 (243)
                      .|...
T Consensus        86 yCa~~   90 (106)
T d1lk3l1          86 FCQQS   90 (106)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            99654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.5e-07  Score=54.45  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVAEDTQ   95 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   95 (243)
                      ..++.++|.|.+.+.+|.+.|.|+++|..+.............+    .+.|.+.   ..+...|+|.+.+.......
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcE
Confidence            35778999999987789889999999988765332221111111    2344443   45667999999987665443

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=1.8e-07  Score=56.40  Aligned_cols=72  Identities=15%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      ..|..+.+.+|++++|.|... ......+.||+.  |...            ....++..... .....|+|.+++.+|+
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s-~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKAS-QNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGS-GTDFTLTINNVQSEDL   83 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGC
T ss_pred             cCCCeEEECCCCCEEEEEEeC-CCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCC-CCeeeeeechhheecc
Confidence            345556788999999999974 333447899973  2211            11234443332 2357899999999999


Q ss_pred             eeEEEEEE
Q psy11132         80 GNYSCTVR   87 (243)
Q Consensus        80 G~Y~C~~~   87 (243)
                      |.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1mexl1          84 AEYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeEEEeEC
Confidence            99999764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.56  E-value=2.5e-07  Score=56.23  Aligned_cols=73  Identities=15%  Similarity=0.303  Sum_probs=49.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         16 NPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      +..+.+.+|++++|.|.++... ....+.||+.  +..+            ....++..... .....|.|.+++.+|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKS-GTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-TTEEEEEESSCCGGGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCC-CCEeeeEEeeeccccCc
Confidence            3457789999999999875332 2346999973  1111            11233333332 23578999999999999


Q ss_pred             eEEEEEEeC
Q psy11132         81 NYSCTVRNM   89 (243)
Q Consensus        81 ~Y~C~~~~~   89 (243)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987653

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.56  E-value=7.2e-08  Score=59.18  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---ec----------CCCceEEEE-eeeeceEEEEeecCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---LD----------NSAALSITH-VDQYNSMLVIDSVSAR   77 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~~----------~~~~~~~~~-~~~~~~~l~i~~~~~~   77 (243)
                      ..+..+.+.+|++++|.|... ......+.||+.  +..   +.          ...+..... .......|+|.+++.+
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~-~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYS-YSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             cCCCeEEECCCCCEEEEEEEc-CCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            334456789999999999985 344457889972  221   10          011111111 1122468999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1i9ea_          84 DSAVYFCAVSG   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ccceecccccC
Confidence            99999998764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=6.6e-07  Score=53.01  Aligned_cols=71  Identities=21%  Similarity=0.282  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ...|+..+|.|.+.+.+| ...++|.++|..+.......... .++.........+..++.+.|+|.+....-
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSM   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCC
Confidence            346888999999976666 56899999999887543322222 222222333334456667799999988643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=2e-07  Score=56.36  Aligned_cols=72  Identities=22%  Similarity=0.373  Sum_probs=49.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e-------c--CCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L-------D--NSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++++|.|... ......+.||+.  ++.   +       .  ...++.... ......|.|.+++.+|+|
T Consensus         7 sP~~l~~~~G~svtL~C~~s-~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRAS-ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-SGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCE
T ss_pred             cCCEEEECCCCCEEEEEEeC-CCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec-cCCEEEEEEccccccCCe
Confidence            35667788999999999985 333446999982  221   1       0  122333322 233578999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998753

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=9.6e-08  Score=59.16  Aligned_cols=69  Identities=19%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe--CCEecC---------CC-------------CCeeEEeeccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPLS---------PR-------------FPVNVSDLDSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~---------~~-------------~~~~~~~~~~~~~~l~i~~~  170 (243)
                      ..+.+|++++|.|.+ .+.....+.|++  .+..+.         ..             ..............|.|.++
T Consensus        11 ~~~~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~   89 (122)
T d1nezg_          11 MDAELGQKVDLVCEV-LGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF   89 (122)
T ss_dssp             EEECTTCCEEEEEEE-ESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred             EEECCCCCEEEEEEE-cCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence            456789999999998 466677899997  222111         00             01111122233467999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy11132        171 SAAHSGEYTCVASN  184 (243)
Q Consensus       171 ~~~d~g~y~C~~~n  184 (243)
                      +.+|+|.|.|.+..
T Consensus        90 ~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          90 SKENEGYYFCSVIS  103 (122)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCCEEEEeeEeC
Confidence            99999999998763

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.55  E-value=5.2e-07  Score=55.01  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec---------------CCCceEEEEeeeeceEEEEeecCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD---------------NSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      ..|....+.+|++++|.|... . ....+.|||.  |..+.               ...+............|+|.+++.
T Consensus         5 QsP~~~~~~~G~~v~l~C~~~-~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           5 QSSRYLVKRTGEKVFLECVQD-M-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             ESCSEEEEETTCCEEECEEES-S-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             ccCCEEEECCCCCEEEEEEEc-C-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            345556688999999999863 2 3347889972  22110               011222222223346899999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (113)
T d1j8he1          83 NQTSMYLCASSS   94 (113)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcccEEeeEcc
Confidence            999999998874

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.3e-07  Score=54.01  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      +..+.|.|.+.+.+| ...++|+++|..+...........++.......-.+..++...|+|.+......
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            457899999976667 569999999988765433222222222222222223345667899999986443

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=1.6e-07  Score=57.30  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------c----CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------D----NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~----~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      |....+.+|++++|.|....  ....+.||+.  ++.+            .    ...++...........|+|.+++.+
T Consensus         6 P~~~~~~~G~svtl~C~~~~--~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS--GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT--TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECC--CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            45566889999999998642  3457999983  2111            0    1122222222233578999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998864

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.54  E-value=2e-07  Score=55.88  Aligned_cols=70  Identities=21%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      ..+.+.+|++|+|.|... ......+.|||.  |..+            ....+..... ......|.|.+++.+|+|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~-~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           6 PSVSVSPGQTARITCSAN-ALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST-SGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             SEEEECTTSCEEEEEECT-TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEETTCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEeC-CCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC-CCCccCceEcCcchhHCceE
Confidence            356688999999999874 333447899983  2211            0122233222 22357899999999999999


Q ss_pred             EEEEEe
Q psy11132         83 SCTVRN   88 (243)
Q Consensus        83 ~C~~~~   88 (243)
                      .|.+..
T Consensus        84 yCA~~~   89 (103)
T d8faba1          84 YCQAWD   89 (103)
T ss_dssp             EEEEEE
T ss_pred             EeeecC
Confidence            997764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=7.7e-08  Score=58.09  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++|+|.|... ......+.||+.  |+.+            ....++.... ......|.|.+++.+|+|
T Consensus         7 sP~s~~~~~G~~vtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRAS-QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG-SGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE-ETTEEEEECSCCCSCCCS
T ss_pred             cCCEEEECCCCCEEEEEEcC-CCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc-cCCEEEEEEeEeeecCCC
Confidence            35566788999999999874 444457999973  2211            1112333222 223578999999999999


Q ss_pred             eEEEEEE
Q psy11132         81 NYSCTVR   87 (243)
Q Consensus        81 ~Y~C~~~   87 (243)
                      .|.|...
T Consensus        85 ~YyCa~~   91 (107)
T d3cx5k1          85 TYFCQHH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             cEEeeeC
Confidence            9999654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=3.9e-07  Score=54.79  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--E--e---------cCC-CCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--K--P---------LSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~--~---------~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+..  .  .         ... ...... ........|.|.+++.+|++.|.|
T Consensus        10 l~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~L~I~~~~~~DsA~YyC   87 (106)
T d1a0ql1          10 LSASLGGKVTITCKA-SQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRG-SGSGRDYSFSISNLEPEDIATYYC   87 (106)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE-EEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEc-CCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEe-ecCCCEeeeEehhhcccCCEeEEE
Confidence            346789999999987 45555569999721  1  1         011 111222 223345789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        88 a~~~   91 (106)
T d1a0ql1          88 LQYY   91 (106)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            8754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.2e-07  Score=53.48  Aligned_cols=83  Identities=20%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             cCCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEE
Q psy11132        103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      .+|.+...+.  .....|+..+|.|.+.+.+| ...++|.++|..+.......... .++.........+..++.+.|+|
T Consensus         4 ~~P~V~v~~~--~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           4 RTPKIQVYSR--HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             BCCEEEEEES--SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCeeEEEcC--CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            3455444322  23457889999999976666 55999999999886543222222 22222233333445667779999


Q ss_pred             EEEccCc
Q psy11132        181 VASNTAA  187 (243)
Q Consensus       181 ~~~n~~g  187 (243)
                      .+.....
T Consensus        82 ~V~H~sl   88 (100)
T d1k5nb_          82 RVNHVTL   88 (100)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9998643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=2.1e-07  Score=56.11  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=48.8

Q ss_pred             CCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCe
Q psy11132         15 TNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   80 (243)
                      .|..+.+.+|++|+|.|... ......+.||+.  +...            ....++..... .....|.|.+++.+|+|
T Consensus         7 ~P~sl~~~~G~svtl~C~~s-~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKAS-QDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGS-GQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCE
T ss_pred             eCCEEEECCCCCEEEEEEcC-CCCCCccceeEeccccCeEEEEEeccccccCcCCceeeccc-CCEEEccccccCCcCCE
Confidence            35566788999999999885 444457889973  2111            01223433322 23578999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|....
T Consensus        85 ~YyCa~~~   92 (107)
T d1d5il1          85 IYYCLQYD   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecc
Confidence            99997653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=2.4e-07  Score=56.56  Aligned_cols=72  Identities=18%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEE--CCeeec---------------CCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLK--DGRYLD---------------NSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      |..+.+.+|++++|.|....+  ...+.|||  .++...               ...+............|+|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG--HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT--CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECCC--CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            455678899999999997432  34789998  222210               11222222222335789999999999


Q ss_pred             CeeEEEEEEeC
Q psy11132         79 SGNYSCTVRNM   89 (243)
Q Consensus        79 ~G~Y~C~~~~~   89 (243)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (113)
T d2ntsp1          84 SALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeeeeeeeCC
Confidence            99999988743

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.8e-07  Score=53.65  Aligned_cols=65  Identities=20%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+..|++++|.|.. .......+.|+++|......  .   ........+.|.++..+|+|.|+|.....
T Consensus        14 ~~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~~~~~--~---~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ--H---QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS--E---EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeC-CCCCceEEEEEECCcccceE--E---cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            467899999999975 23445689999998643322  1   11223477999999999999999988754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.3e-07  Score=53.38  Aligned_cols=72  Identities=22%  Similarity=0.434  Sum_probs=48.6

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-ccc---eeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSF---SSLLSINSVSAAHSGEYTCVASNTAAQARYS  192 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  192 (243)
                      ..++.++|.|.+.+++|.+.+.|+++|..+........... ++.   .+.|.+.   ..+...|+|.+.+........
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence            35788999999987789999999999988765433222221 111   2345443   445679999999876654443

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.53  E-value=3.3e-07  Score=54.99  Aligned_cols=69  Identities=16%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee----------c--CCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL----------D--NSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      |..+.+.+|++++|.|..+ . ....+.||+..  ...          .  ...++.... ......|.|.+++.+|+|.
T Consensus         7 P~~l~~~~G~~vtl~C~~s-~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSAS-S-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG-SGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             SSEEEECTTCCEEEEEEES-S-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeC-C-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEec-CCCEEEEEecccCcccCCe
Confidence            5556788999999999874 3 23368999732  111          1  112222222 2235789999999999999


Q ss_pred             EEEEEE
Q psy11132         82 YSCTVR   87 (243)
Q Consensus        82 Y~C~~~   87 (243)
                      |.|...
T Consensus        84 YyCa~~   89 (104)
T d1yqvl1          84 YYCQQW   89 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.2e-08  Score=59.07  Aligned_cols=84  Identities=17%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             CCCCCCCcEEEEEEeecCC--CCCEEEEEeCCEecC--------------CCCCeeEE-eeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGD--PPLTIRWLKDGKPLS--------------PRFPVNVS-DLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~--------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|....+.  ....+.|++....-.              ...+.... ........|.|.+++.+|+|.
T Consensus         9 V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~   88 (116)
T d1xeda_           9 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGR   88 (116)
T ss_dssp             EEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEE
Confidence            4556899999999873221  134678987432110              01111121 222335679999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEE
Q psy11132        178 YTCVASNTAAQARYSSKLQVK  198 (243)
Q Consensus       178 y~C~~~n~~g~~~~~~~l~v~  198 (243)
                      |.|.+..........+.|.|.
T Consensus        89 Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          89 YKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             EEEEESCGGGCCEEEEEEEEE
T ss_pred             EEEEEEcCCCCceEeEEEEEE
Confidence            999987654444455677776

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.3e-07  Score=55.09  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .||.+.+...   ...++.++|.|.+.+..|. ..++|.++|..+...........+..........+...+...|+|.+
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V   78 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQV   78 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEE
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEE
Confidence            4666665322   1234589999999865564 59999999988754322211111111112222233445667999999


Q ss_pred             EeCCCc
Q psy11132         87 RNMVAE   92 (243)
Q Consensus        87 ~~~~~~   92 (243)
                      .+....
T Consensus        79 ~H~sL~   84 (91)
T d3frua1          79 EHEGLA   84 (91)
T ss_dssp             ECTTSS
T ss_pred             EeCCCC
Confidence            876543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.52  E-value=2.1e-07  Score=56.40  Aligned_cols=71  Identities=20%  Similarity=0.407  Sum_probs=48.5

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      |..+.+.+|++++|.|... +.....+.||+.  ++.   +         ....++.... ......|+|.+++.+|+|.
T Consensus        10 P~~l~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQAS-QDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG-SGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEec-CCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC-CCCEeEEEEeeceeCcCce
Confidence            5567788999999999985 444457899973  111   1         1123333332 2235689999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|.+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9997653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.3e-07  Score=56.44  Aligned_cols=72  Identities=14%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             cccccCCeEEEEEEeeCCC--CCceeEEE--ECCeeec----------C--CCceEE-EEeeeeceEEEEeecCCCCCee
Q psy11132         19 RTLNVGERASLICSITKGD--IPLTIKWL--KDGRYLD----------N--SAALSI-THVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~--~~~~v~W~--~~~~~~~----------~--~~~~~~-~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      +.+..|++++|+|.+....  +...+.|+  ++.....          .  ..++.. ......+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4577899999999985222  12234444  4332210          0  011110 1112235789999999999999


Q ss_pred             EEEEEEeCC
Q psy11132         82 YSCTVRNMV   90 (243)
Q Consensus        82 Y~C~~~~~~   90 (243)
                      |.|.+....
T Consensus        84 Y~C~V~~~~   92 (110)
T d1ncna_          84 YQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999986443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.7e-08  Score=59.19  Aligned_cols=67  Identities=15%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             CCCCCcEEEEEEeecCCCCCEEEEEeCCEec--C--------CCC----CeeE--EeeccceeEEEEeecCCCCCeeEEE
Q psy11132        117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL--S--------PRF----PVNV--SDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--~--------~~~----~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+|++++|.|.. .......+.|++.....  .        ...    +...  ......+..|.|.+++.+|+|.|.|
T Consensus         6 ~~~G~svtL~C~~-s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           6 GKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEcCCcEEEEEEE-ecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            3579999999987 45566789999753311  0        000    0000  0111224569999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            9976

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.50  E-value=2.4e-07  Score=56.67  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=48.1

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec---------------CCCceEEEEeeeeceEEEEeecCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD---------------NSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      ..|..+.+.+|++++|.|..+  .....+.||+.  ++.+.               ...+............|.|.+++.
T Consensus         4 QsP~~~~~~~G~svtl~C~~s--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN--LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC--SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EcCCeEEEcCCCCEEEEEEEe--cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            345566789999999999974  33447999973  21110               011111111222246799999999


Q ss_pred             CCCeeEEEEEEeC
Q psy11132         77 RHSGNYSCTVRNM   89 (243)
Q Consensus        77 ~d~G~Y~C~~~~~   89 (243)
                      +|+|.|.|.+...
T Consensus        82 ~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 NPTAFYLCASSSR   94 (114)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             CCceeEEEeeccC
Confidence            9999999977643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.50  E-value=3.7e-07  Score=55.07  Aligned_cols=72  Identities=19%  Similarity=0.347  Sum_probs=48.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      ++.+.+.+|++++|.|... ......+.||+.  ++.+            ....+..... ......|.|.+++.+|+|.
T Consensus         7 p~sl~~~~G~svtl~C~~~-~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGN-NIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN-SGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             CSEEEECTTSCEEEEEECT-TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEcC-CCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec-CCCccceEEeeeccCCCEE
Confidence            3356788999999999874 333447999973  2211            0122333322 2335789999999999999


Q ss_pred             EEEEEEeC
Q psy11132         82 YSCTVRNM   89 (243)
Q Consensus        82 Y~C~~~~~   89 (243)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99988754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.8e-08  Score=58.60  Aligned_cols=72  Identities=17%  Similarity=0.250  Sum_probs=46.5

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Cee---ec------------CCCceEEEEe-eeeceEEEEeecCCCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRY---LD------------NSAALSITHV-DQYNSMLVIDSVSARH   78 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~---~~------------~~~~~~~~~~-~~~~~~l~i~~~~~~d   78 (243)
                      ...+.+|++++|.|.+... .....+.|+|.  +..   +.            ...++.+... ......|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            4667899999999987421 23347889983  211   10            0113333222 2223679999999999


Q ss_pred             CeeEEEEEEeC
Q psy11132         79 SGNYSCTVRNM   89 (243)
Q Consensus        79 ~G~Y~C~~~~~   89 (243)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999988644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.49  E-value=4.1e-07  Score=55.41  Aligned_cols=72  Identities=17%  Similarity=0.316  Sum_probs=47.4

Q ss_pred             CCCCcccccCCeEEEEEEeeCC-----CCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecC
Q psy11132         15 TNPERTLNVGERASLICSITKG-----DIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVS   75 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~-----~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~   75 (243)
                      .|..+.+.+|++++|.|.++..     .....+.||+.  |..+            ....+..... ......|.|.+++
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~-s~~~~~L~I~~l~   85 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-SGTDFTLTITSVQ   85 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC-CCCeEeEEecccc
Confidence            3556678899999999986421     11235899983  2211            1122333322 2335689999999


Q ss_pred             CCCCeeEEEEEE
Q psy11132         76 ARHSGNYSCTVR   87 (243)
Q Consensus        76 ~~d~G~Y~C~~~   87 (243)
                      .+|+|.|.|...
T Consensus        86 ~~Dsa~YyCA~~   97 (113)
T d1q9ra1          86 AEDLAVYYCKQS   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCCeEEEeccc
Confidence            999999999764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.2e-07  Score=58.42  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=47.5

Q ss_pred             CCCcccccCCeEEEEEEeeCC--C---CCceeEEEECCee----e-----------cCCCceEEEE-eeeeceEEEEeec
Q psy11132         16 NPERTLNVGERASLICSITKG--D---IPLTIKWLKDGRY----L-----------DNSAALSITH-VDQYNSMLVIDSV   74 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~--~---~~~~v~W~~~~~~----~-----------~~~~~~~~~~-~~~~~~~l~i~~~   74 (243)
                      |..+.+.+|+.|+|+|.+...  .   ....+.|++....    +           ....+..+.. ......+|+|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            455678999999999997521  1   1235567764221    1           0122333322 1234578999999


Q ss_pred             CCCCCeeEEEEEEeCC
Q psy11132         75 SARHSGNYSCTVRNMV   90 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~~   90 (243)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.48  E-value=2.3e-07  Score=56.58  Aligned_cols=76  Identities=20%  Similarity=0.371  Sum_probs=49.8

Q ss_pred             ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee------------c---CCCceEEEEeeeeceEEEEeec
Q psy11132         12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL------------D---NSAALSITHVDQYNSMLVIDSV   74 (243)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~------------~---~~~~~~~~~~~~~~~~l~i~~~   74 (243)
                      +...|..+.+.+|++++|.|....+  ...+.|||..  +.+            .   ...++...........|+|.++
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            4444666778999999999986432  3479999842  111            0   0122222222223468999999


Q ss_pred             CCCCCeeEEEEEEeC
Q psy11132         75 SARHSGNYSCTVRNM   89 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~   89 (243)
                      +.+|+|.|.|.+...
T Consensus        82 ~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          82 ELEDSAMYFCASSLR   96 (113)
T ss_dssp             CGGGCEEECEEEESS
T ss_pred             CcCCceeEEEEeecC
Confidence            999999999987643

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.48  E-value=5e-07  Score=53.07  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             CCeEEEEEEeeCCCCCceeEEEECC--ee---e--------cCCCceEEEEe-eeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         24 GERASLICSITKGDIPLTIKWLKDG--RY---L--------DNSAALSITHV-DQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~--------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      |++|+|.|... ......+.||+..  ..   +        ....++..... .....+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYS-DRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEEC-CTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEc-cccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999985 4455689999821  11   1        11223332221 122468999999999999999988743

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=8.6e-07  Score=53.37  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Eec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... ......+.||+..  ..+           . ...+... ........|.|.+++.+|+|.|.|
T Consensus        11 l~v~~G~~vtL~C~~~-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~-~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1j1pl_          11 LSVTPGNSVSLSCRAS-QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSG-SGSGTDFTLSINSVETEDFGMYFC   88 (107)
T ss_dssp             EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-EEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEec-CCCCcceEEEEeCCCCccEEeeecccCCCceeCCccee-cccCCEEEEEEcccCcCCCEEEEE
Confidence            4567899999999873 4445679999732  111           1 1112222 233446789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+.+.
T Consensus        89 a~~~~   93 (107)
T d1j1pl_          89 QQANS   93 (107)
T ss_dssp             EECSS
T ss_pred             EcCCC
Confidence            77543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.48  E-value=5e-07  Score=53.64  Aligned_cols=81  Identities=25%  Similarity=0.433  Sum_probs=49.3

Q ss_pred             ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEeee----eceEEEEeecCCCCCe
Q psy11132          7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVDQ----YNSMLVIDSVSARHSG   80 (243)
Q Consensus         7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~l~i~~~~~~d~G   80 (243)
                      ..||.+.+.+.. .+..|+.++|.|.+.+..|. ..++|.+||..+..+... .......    ..+.|.+   ...+..
T Consensus         3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~   78 (101)
T d1fnga1           3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDD   78 (101)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTC
T ss_pred             CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCC
Confidence            356766654322 24457888999999876664 599999999987643211 1111111    1233443   345566


Q ss_pred             eEEEEEEeCCC
Q psy11132         81 NYSCTVRNMVA   91 (243)
Q Consensus        81 ~Y~C~~~~~~~   91 (243)
                      .|+|.+.+...
T Consensus        79 ~ytC~V~H~sl   89 (101)
T d1fnga1          79 FYDCEVDHWGL   89 (101)
T ss_dssp             CEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999987644

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.47  E-value=7.1e-07  Score=54.27  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCC--CCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGD--IPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      |..+.+.+|++++|.|....+.  ....+.|||.  +..+            ....++..... .....|.|.+++.+|+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKS-GNSASLTISGLQAEDE   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEECSCCGGGC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECC-CCEeeEEeCcCccccC
Confidence            4567789999999999975332  2235899983  2111            11223333222 2367899999999999


Q ss_pred             eeEEEEEEeC
Q psy11132         80 GNYSCTVRNM   89 (243)
Q Consensus        80 G~Y~C~~~~~   89 (243)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (112)
T d1lgva1          86 ADYYCSSYDG   95 (112)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEeeecC
Confidence            9999987653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.47  E-value=6.7e-07  Score=52.71  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=50.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCce-EEEEee-eeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAAL-SITHVD-QYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~-~~~~~~-~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+.+.... ....++.++|.|.+.+..| ...++|.+||..+...... ...... ..........+..++...|+|
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC   80 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTC   80 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEE
Confidence            46666654322 2456788999999986555 4699999999987543221 111111 111222222345566679999


Q ss_pred             EEEeCCCc
Q psy11132         85 TVRNMVAE   92 (243)
Q Consensus        85 ~~~~~~~~   92 (243)
                      .+.+....
T Consensus        81 ~V~H~sl~   88 (98)
T d1hdmb1          81 VVEHIGAP   88 (98)
T ss_dssp             EEECTTSS
T ss_pred             EEEeCCCC
Confidence            99986543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=2.9e-07  Score=56.48  Aligned_cols=71  Identities=23%  Similarity=0.362  Sum_probs=47.9

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Cee---e---------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRY---L---------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      |..+.+.+|++++|.|... ......+.||+.  +..   +         ....++.... ......|.|.+++.+|+|.
T Consensus         8 P~sv~~~~G~svtl~C~~s-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGS-QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-SGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             TSEECCCTTCCEEEEEECS-SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-EBTEEEEEECSCCGGGCSE
T ss_pred             CCEEEECCCCCEEEEEEeC-CCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC-CCCEEEEEcccCccCCCeE
Confidence            4556688999999999974 344447899983  211   1         1122333222 2234689999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|....
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997653

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=2.2e-07  Score=56.58  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec----------CCCceEEEE-eeeeceEEEEeecCCCCCeeE
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD----------NSAALSITH-VDQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      |..+.+.+|++|+|.|..........+.|||.  |+.+.          ......+.. .+.....|.|.+++.+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            44566889999999999753333346899983  22211          011111111 112346899999999999999


Q ss_pred             EEEEEe
Q psy11132         83 SCTVRN   88 (243)
Q Consensus        83 ~C~~~~   88 (243)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.47  E-value=3.6e-07  Score=55.46  Aligned_cols=72  Identities=22%  Similarity=0.360  Sum_probs=47.3

Q ss_pred             CCCcccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceeec------------CCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGD---IPLTIKWLKD--GRYLD------------NSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      |..+.+.+|++|+|.|....+.   ....+.||+.  |..+.            ...+..... ......|.|.+++.+|
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPVEADD   86 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-SSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec-CCCEEEEEEccccccc
Confidence            5566688999999999874221   2235999983  32110            112333222 2235799999999999


Q ss_pred             CeeEEEEEEe
Q psy11132         79 SGNYSCTVRN   88 (243)
Q Consensus        79 ~G~Y~C~~~~   88 (243)
                      +|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (111)
T d1j05a_          87 VATYYCQQTN   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CccEEEeecC
Confidence            9999997653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.5e-06  Score=52.47  Aligned_cols=72  Identities=17%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             CCCCCCcEEEEEEeecCCC-CCEEEEEeCCEe-----c-------C--CCCCeeEE-eeccceeEEEEeecCCCCCeeEE
Q psy11132        116 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKP-----L-------S--PRFPVNVS-DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~-----~-------~--~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ...+|++++|.|....... ...+.|++....     +       .  ...+.... ........|.|.+++.+|+|.|.
T Consensus         7 ~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~   86 (108)
T d1hkfa_           7 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYW   86 (108)
T ss_dssp             EECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEE
Confidence            4578999999998742322 346789873210     0       0  01112222 12334578999999999999999


Q ss_pred             EEEEccCc
Q psy11132        180 CVASNTAA  187 (243)
Q Consensus       180 C~~~n~~g  187 (243)
                      |.+.....
T Consensus        87 C~v~~~~~   94 (108)
T d1hkfa_          87 CRIYRPSD   94 (108)
T ss_dssp             EEEECTTT
T ss_pred             EEEecCCC
Confidence            99886543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.46  E-value=1.3e-06  Score=51.66  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+..|.+++|.|..  ..+...+.|+|+|......  ............+.|..+...|+|.|+|.....
T Consensus        15 ~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          15 PTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERR--LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEE--EECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CcccCCCeEEEEECC--CCCccEEEEEECCCccccE--EEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            567889999999986  4567899999998643321  111112223455778888889999999987644

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.6e-07  Score=51.71  Aligned_cols=62  Identities=19%  Similarity=0.407  Sum_probs=46.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  183 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  183 (243)
                      ..+..|++++|.|..  ..+...+.|+|+|.....     ..........+.|.+++.+|+|.|+|...
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEEC--SSSCSEEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECC--CCCCCEEEEEECCCccce-----eecCCCceeEEEecccChhcCceEEEEeE
Confidence            457789999999986  456779999998763221     11222345789999999999999999743

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=1.1e-06  Score=52.75  Aligned_cols=69  Identities=16%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+.  |....            ...+... ........|.|.+++.+|+|.|.|
T Consensus        11 lsv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~-~~~~~~~~L~I~~~~~~Dsa~YyC   88 (106)
T d1i8ka_          11 LSVATGEKVTIRCMT-STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSS-SGTGTDFVFTIENTLSEDVGDYYC   88 (106)
T ss_dssp             EECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-EEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeE-eCCCCeeeecccCCccccCEEEeE
Confidence            446789999999987 3444557999963  22110            1111222 222345789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+.+.
T Consensus        89 a~~~~   93 (106)
T d1i8ka_          89 LQSFN   93 (106)
T ss_dssp             EECSS
T ss_pred             ecCcc
Confidence            87653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=9.7e-07  Score=52.98  Aligned_cols=69  Identities=16%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+.  |....            ........ .......|.|.+++.+|+|.|.|
T Consensus        11 ~~~~~G~svtl~C~~-s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~l~~~Dsa~YyC   88 (107)
T d1c5cl1          11 LSASLGERVSLTCRT-SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGS-RSGSDYSLTISSLESEDFADYYC   88 (107)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEE-EETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEec-ccCCEEEEEEhhhcccCCeEEEE
Confidence            346789999999997 4555567999972  22110            11111111 22335789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+.+.
T Consensus        89 a~~~~   93 (107)
T d1c5cl1          89 LQYAS   93 (107)
T ss_dssp             EECSS
T ss_pred             ecCcC
Confidence            87653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=3.5e-07  Score=55.91  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEe-eeeceEEEEeecCCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHV-DQYNSMLVIDSVSARH   78 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d   78 (243)
                      ..|..+.+.+|++++|.|... +. ...+.||+.  |..+            ....+..+... ......|.|.+++.+|
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s-~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSS-SV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECS-SC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             eCCCeEEECCCCCEEEEEEEC-CC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            335567789999999999974 32 347999982  2211            11122222211 1235789999999999


Q ss_pred             CeeEEEEEEeC
Q psy11132         79 SGNYSCTVRNM   89 (243)
Q Consensus        79 ~G~Y~C~~~~~   89 (243)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (115)
T d1ogad1          83 TGLYLCAGAGS   93 (115)
T ss_dssp             CEEEEEEEECT
T ss_pred             eeeEcccccCC
Confidence            99999987644

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=1.2e-06  Score=52.71  Aligned_cols=68  Identities=19%  Similarity=0.334  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEe-----------cC-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKP-----------LS-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~-----------~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... ......+.||+.  +..           .. ...... .........|.|.+++.+|+|.|.|
T Consensus        11 l~v~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~l~~~DSa~YyC   88 (107)
T d1kcvl1          11 MGMSVGEAVTLNCKAS-ENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFT-GSGSATDFTLTISSVQADDDADYYC   88 (107)
T ss_dssp             EEEETTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EeECCCCCEEEEEEec-CCcCCceEEEEcccCCCCEEEEEecccccCCccceEE-eeccCCeeecEEHhheecCCceEEE
Confidence            3456899999999984 444557999973  111           01 111122 2223346789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1kcvl1          89 GQSY   92 (107)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            8754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.6e-08  Score=56.78  Aligned_cols=88  Identities=18%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN   88 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   88 (243)
                      +|.+...+. ..|..|++|+|.|..  ..+...+.++|+|.........  .........+.|.+++..|+|.|+|....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRI--PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTS--CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEc--cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            455655554 447899999999996  3444578888987543210000  00011246799999999999999998764


Q ss_pred             CCC---cceeEEEEEE
Q psy11132         89 MVA---EDTQVQRLIV  101 (243)
Q Consensus        89 ~~~---~~~~~~~l~v  101 (243)
                      ...   ..+..+.|.|
T Consensus        79 ~~~~~S~~Sd~leL~V   94 (96)
T d1ugna1          79 DTAGRSESSDPLELVV   94 (96)
T ss_dssp             TTTEECCCCCCEEEEE
T ss_pred             CCCCccccCCCEEEEE
Confidence            321   2344445544

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.44  E-value=7.7e-07  Score=54.02  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             CCCCcccccCCeEEEEEEeeCCC----CCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCC
Q psy11132         15 TNPERTLNVGERASLICSITKGD----IPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      .+..+.+.+|++|+|.|.++.+.    ....+.||+.  |...            ....++.... ......|.|.+++.
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~-s~~~~~L~Is~~~~   85 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG-SGTAFTLRISRVEA   85 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-CSSEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec-CCCEEEEEECCccc
Confidence            35566688999999999875321    2347899973  2211            0122333332 22357899999999


Q ss_pred             CCCeeEEEEE
Q psy11132         77 RHSGNYSCTV   86 (243)
Q Consensus        77 ~d~G~Y~C~~   86 (243)
                      +|+|.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999954

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=1e-06  Score=53.00  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... +.....+.||+.  +...           . ...+... ........|.|.+++.+|+|.|.|
T Consensus        11 ltv~~G~svtl~C~~s-~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~-~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1ospl1          11 FSVSLGDRVTITCKAS-EDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSG-SDSGKDYTLSITSLQTEDVATYFC   88 (107)
T ss_dssp             EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-ECSSSSEEEEESSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEecC-CCcccccEEEEcCCCccceeEEeeccccCCccccccce-ecCCCeEEeEEcccccccCCcEEE
Confidence            4467899999999884 444457999972  1110           0 1111222 223345789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+...
T Consensus        89 a~~~~   93 (107)
T d1ospl1          89 QQYWS   93 (107)
T ss_dssp             EECSS
T ss_pred             eeccC
Confidence            87643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.44  E-value=5e-07  Score=54.75  Aligned_cols=72  Identities=14%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC-----------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS-----------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ..+.+|++++|.|..........+.||+.  +....           ................|.|.+++.+|+|.|.|.
T Consensus         8 vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (110)
T d2esvd1           8 MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI   87 (110)
T ss_dssp             EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence            45678999999998732333456899973  21110           000011112223457799999999999999999


Q ss_pred             EEccC
Q psy11132        182 ASNTA  186 (243)
Q Consensus       182 ~~n~~  186 (243)
                      +....
T Consensus        88 ~~~~~   92 (110)
T d2esvd1          88 VVRSS   92 (110)
T ss_dssp             EEESC
T ss_pred             EeCCC
Confidence            87543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.1e-06  Score=53.55  Aligned_cols=70  Identities=17%  Similarity=0.245  Sum_probs=46.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC------------------CCCCeeEEeeccceeEEEEeecCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS------------------PRFPVNVSDLDSFSSLLSINSVSAAH  174 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~------------------~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (243)
                      ..+.+|++++|.|.+........+.|++...  .+.                  ...+.... .......|.|.+++.+|
T Consensus        10 ~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~-~~~~~~~L~I~~l~~~D   88 (114)
T d1akjd_          10 RTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGK-RLGDTFVLTLSDFRREN   88 (114)
T ss_dssp             CCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEE-EETTEEEEEESSCCGGG
T ss_pred             EeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEE-CCCCChhcEEccCCCCC
Confidence            5678999999999985444445789997221  100                  00111122 22335679999999999


Q ss_pred             CeeEEEEEEcc
Q psy11132        175 SGEYTCVASNT  185 (243)
Q Consensus       175 ~g~y~C~~~n~  185 (243)
                      +|.|.|.+...
T Consensus        89 sg~YyCa~~~~   99 (114)
T d1akjd_          89 EGYYFCSALSN   99 (114)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEeEeEcCC
Confidence            99999998753

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.43  E-value=7.6e-07  Score=54.15  Aligned_cols=71  Identities=15%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec-------------C--CCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD-------------N--SAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------------~--~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      |....+.+|++++|.|..+.  ....+.||+.  ++.+.             .  ..+............|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM--NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS--CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEEC--CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            44556889999999998743  3447999972  22110             0  1111111122224689999999999


Q ss_pred             CeeEEEEEEe
Q psy11132         79 SGNYSCTVRN   88 (243)
Q Consensus        79 ~G~Y~C~~~~   88 (243)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999998763

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.9e-07  Score=52.15  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEee-eeceEEEEeecCCCCCeeEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVD-QYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .||.+.+...   ...|+.++|.|.+.+..|. ..++|.+||..+............ ..........+...+...|+|.
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            4676665432   2347899999999865664 699999999887643322222211 1123333444556677799999


Q ss_pred             EEeCCCc
Q psy11132         86 VRNMVAE   92 (243)
Q Consensus        86 ~~~~~~~   92 (243)
                      +.+....
T Consensus        79 V~H~sl~   85 (94)
T d1t7va1          79 VQHSSLA   85 (94)
T ss_dssp             EEETTCS
T ss_pred             EEECCCC
Confidence            9986544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.43  E-value=3.6e-06  Score=49.49  Aligned_cols=72  Identities=24%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ...++.+.|.|.+.+.+| ...++|+++|..+......  .....++.........+..++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            345788999999976666 7799999999988644222  12222222222222234555666899999987543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=2.1e-06  Score=51.57  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Ee-----------cCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP-----------LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ..+.+|++++|.|... ......+.||+..  ..           ..................|.|.+++.+|+|.|.|.
T Consensus        11 l~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          11 LVASPGETITINCRAS-KSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             EEecCCCCEEEEEEcc-CCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEe
Confidence            3457899999999984 4445579999721  11           01111111122233456899999999999999997


Q ss_pred             EEcc
Q psy11132        182 ASNT  185 (243)
Q Consensus       182 ~~n~  185 (243)
                      +.+.
T Consensus        90 ~~~~   93 (108)
T d1jhll_          90 QHNE   93 (108)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            6654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.43  E-value=8.9e-07  Score=54.14  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC-----Eec------CC-----------CCCee-EEeeccceeEEEEeecC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG-----KPL------SP-----------RFPVN-VSDLDSFSSLLSINSVS  171 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-----~~~------~~-----------~~~~~-~~~~~~~~~~l~i~~~~  171 (243)
                      ..+.+|++++|.|.+........+.||+..     +.+      ..           ..... ..........|.|.+++
T Consensus         8 ~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   87 (115)
T d2atpb1           8 LLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVK   87 (115)
T ss_dssp             EEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCC
T ss_pred             EEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccC
Confidence            446789999999998533456679999732     111      00           00111 11122335679999999


Q ss_pred             CCCCeeEEEEEEc
Q psy11132        172 AAHSGEYTCVASN  184 (243)
Q Consensus       172 ~~d~g~y~C~~~n  184 (243)
                      .+|+|.|.|.+..
T Consensus        88 ~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          88 PEDSDFYFCATVG  100 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCCcEEEEeEcC
Confidence            9999999998764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.43  E-value=5e-07  Score=54.77  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=47.7

Q ss_pred             CCCCcccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCC
Q psy11132         15 TNPERTLNVGERASLICSITKGD---IPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      .|..+.+.+|++|+|.|.++.+.   ....+.||+.  |...            ....++..... .....|+|.+++.+
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~-~~~~~L~I~~~~~~   85 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGS-GTDFTLNIHPVEEE   85 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecC-CCchhccccccccc
Confidence            35566788999999999874321   1225899983  2211            01234443322 23578999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |+|.|.|.+.
T Consensus        86 DsA~YyCa~~   95 (111)
T d2gsia1          86 DAATYYCSHI   95 (111)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCceEEEEEC
Confidence            9999999765

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.42  E-value=1.2e-06  Score=52.62  Aligned_cols=69  Identities=16%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... ......+.||+.  |..+           . ...... .........|.|.+++.+|++.|.|
T Consensus        11 l~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~l~~~DsA~YyC   88 (107)
T d1tjgl1          11 LSASVGDRITITCRAS-QGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYYC   88 (107)
T ss_dssp             EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEE-EEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEEC-CCCCccEEEEeccCCccceEEEeecccccCCCCcceE-EeccCCEEEEEeccceeCcCceEEE
Confidence            4467899999999984 444568899972  1111           1 111122 1223446789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+.+.
T Consensus        89 a~~~~   93 (107)
T d1tjgl1          89 QQLHF   93 (107)
T ss_dssp             EECSB
T ss_pred             EECcC
Confidence            76543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=2.2e-08  Score=59.24  Aligned_cols=72  Identities=25%  Similarity=0.440  Sum_probs=47.5

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEe-eeeceEEEEeecCCCCCeeE
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHV-DQYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y   82 (243)
                      .+.|.+|++|+|.|... . ....+.|||.  ++.+            ....++..... ......|.|.+++.+|+|.|
T Consensus         2 slsV~eG~~vtL~C~~~-~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYK-T-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBCS-S-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             CceECCCCCEEEEEEEe-C-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            45688999999999874 3 3457999973  2221            11122222211 12235799999999999999


Q ss_pred             EEEEEeCCC
Q psy11132         83 SCTVRNMVA   91 (243)
Q Consensus        83 ~C~~~~~~~   91 (243)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998876544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.1e-07  Score=55.93  Aligned_cols=71  Identities=14%  Similarity=0.233  Sum_probs=45.8

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE---EEEee---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS---ITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~---~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..++.++|.|.+.+..|. ..+.|.++|..+.......   ....+   ...+.|.|..-.......|+|.+.+....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            346789999999865664 6999999998875432111   11111   11346666655555566899999976543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1.9e-06  Score=51.75  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... +.....+.||+.  +...           . ....... ........|.|.+++.+|+|.|.|
T Consensus        10 ~~~~~G~svtL~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~-~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1          10 LTVSPGEKLTISCKAS-ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSG-SGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             EEECTTSCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-EEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEeC-CCCCccEEEEecCCCCCcEEEEEecccccCCcCCceee-ecCCCEEEeEECCcChhhCCCccc
Confidence            4467899999999984 545567999973  1110           0 1111221 223345789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        88 a~~~   91 (106)
T d1lk3l1          88 QQSW   91 (106)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            7643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.42  E-value=2.2e-06  Score=50.53  Aligned_cols=70  Identities=16%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .++..+|.|.+.+.+| ...++|+++|..+......  .....++..+.+....+..++.+.|+|.+.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            4566689999976666 4699999999988654221  12222332334444456677788999999987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.42  E-value=3.2e-07  Score=55.68  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec------------CCCceEEEEe-eeeceEEEEeecCCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD------------NSAALSITHV-DQYNSMLVIDSVSAR   77 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~~-~~~~~~l~i~~~~~~   77 (243)
                      ...+..+.+.+|++++|.|... ......+.|||.  |+.+.            ...++..... ......|.|.+++.+
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~-~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYS-ASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEE-CSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             EeCCCeEEECCCCCEEEEEEec-CCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            3445567789999999999875 333447999983  22110            0112222111 122468999999999


Q ss_pred             CCeeEEEEEEeC
Q psy11132         78 HSGNYSCTVRNM   89 (243)
Q Consensus        78 d~G~Y~C~~~~~   89 (243)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999988653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.3e-06  Score=53.50  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CcccccCCeEEEEEEeeCCCCC--ceeEEEEC--Ceeec--------------CCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         18 ERTLNVGERASLICSITKGDIP--LTIKWLKD--GRYLD--------------NSAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~--~~~~~--------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .+.+.+|++++|.|....+...  ..+.|||.  ++...              ................|.|.+++.+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            3457789999999998543322  25789983  22110              111111122223357899999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999998763

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=3.3e-07  Score=56.00  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC-------CC-----CCeeEE-eeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS-------PR-----FPVNVS-DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~-------~~-----~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|.. ...+...+.||+...  ...       ..     ...... ........|.|.+++.+|+|.|.
T Consensus        10 ~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1          10 LIILEGKNCTLQCNY-TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEETTCCCEEEEEE-CCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEeCCCCEEEEEEE-cCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            445689999999998 455667899997321  100       00     011111 11233577999999999999999


Q ss_pred             EEEEccCc
Q psy11132        180 CVASNTAA  187 (243)
Q Consensus       180 C~~~n~~g  187 (243)
                      |.+.....
T Consensus        89 Ca~~~~~~   96 (114)
T d2cdea1          89 CVVSDRGS   96 (114)
T ss_dssp             EEEECSCT
T ss_pred             eeeecCCC
Confidence            99987543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.40  E-value=8.8e-07  Score=54.41  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Cee---e---c----------CCCceEEEEe-eeeceEEEEe
Q psy11132         13 SPTNPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRY---L---D----------NSAALSITHV-DQYNSMLVID   72 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~---~----------~~~~~~~~~~-~~~~~~l~i~   72 (243)
                      ...+..+...+|++++|.|.+.... ....+.||+.  |+.   +   .          ...++..... ......|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3334456677899999999874322 2346899983  211   1   0          1112222221 1224679999


Q ss_pred             ecCCCCCeeEEEEEEe
Q psy11132         73 SVSARHSGNYSCTVRN   88 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~   88 (243)
                      +++.+|+|.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999997754

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=9.9e-07  Score=53.23  Aligned_cols=70  Identities=19%  Similarity=0.368  Sum_probs=47.7

Q ss_pred             CcccccCCeEEEEEEeeCCCCC--ceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         18 ERTLNVGERASLICSITKGDIP--LTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      .+.+.+|++++|.|....+...  ..+.||+.  |+..            ....++..... .....|.|.+++.+|+|.
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~-~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-GNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEEESCCGGGCEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc-ccceeeecCCCCccccEe
Confidence            4568899999999998533322  24889972  2221            11234444333 235789999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|....
T Consensus        88 YyCa~~~   94 (110)
T d1oaql_          88 YFCALWY   94 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccc
Confidence            9998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.40  E-value=8e-07  Score=52.48  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      +|.+.+.+.. ....++..+|.|.+.+..|. ..++|.+||..+......  .....+..........+...+...|+|.
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence            4555443222 13346677899999865554 599999999887543211  1111111123334445667778899999


Q ss_pred             EEeCCCc
Q psy11132         86 VRNMVAE   92 (243)
Q Consensus        86 ~~~~~~~   92 (243)
                      +.+....
T Consensus        83 V~H~sl~   89 (98)
T d1d5mb1          83 VEHPSVT   89 (98)
T ss_dssp             EECTTCS
T ss_pred             EEECCCC
Confidence            9986543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=5.9e-07  Score=54.81  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=47.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-------------CCCCCeeEEee-ccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-------------SPRFPVNVSDL-DSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|..........+.||+.  +...             ....+...... ......|.|.+++.+|+|.|
T Consensus         9 l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (114)
T d3bp5a1           9 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY   88 (114)
T ss_dssp             EEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEE
Confidence            44678999999999843344567899972  2110             11112222222 22346799999999999999


Q ss_pred             EEEEEccC
Q psy11132        179 TCVASNTA  186 (243)
Q Consensus       179 ~C~~~n~~  186 (243)
                      .|.+....
T Consensus        89 yCa~~~~~   96 (114)
T d3bp5a1          89 LCGAISLH   96 (114)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99987644

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4e-07  Score=54.64  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee---EEeeccc---eeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN---VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~---~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      ..++.++|.|.+.+.+| ...+.|+++|..+.......   ....++.   .+.|.|..-.......|+|.+.+......
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~~   96 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPS   96 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCCC
Confidence            35678999999976667 57999999999876543211   1111111   24566655545566689999998655443

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.6e-06  Score=50.60  Aligned_cols=80  Identities=21%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCC--ceEEEEeee-eceEEEEeecCCCCCeeEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSA--ALSITHVDQ-YNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~--~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .||.+.+..    -..++.++|.|.+.+..| ...++|.+||..+....  .......+. .........+...+...|+
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            567666532    224677999999986556 45999999999875422  111222111 1222333345566677899


Q ss_pred             EEEEeCCC
Q psy11132         84 CTVRNMVA   91 (243)
Q Consensus        84 C~~~~~~~   91 (243)
                      |.+.+...
T Consensus        79 C~V~H~sl   86 (94)
T d1de4a1          79 CQVEHPGL   86 (94)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99997643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.1e-06  Score=50.26  Aligned_cols=70  Identities=14%  Similarity=0.350  Sum_probs=46.2

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      .|+.++|.|.+.+.+| ...++|.++|..+........... ++.........+...+...|+|.+......
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            4788999999976677 469999999998765433222222 222233334445566667899999986543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.38  E-value=8.9e-07  Score=53.82  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             CCCCcccccCCeEEEEEEeeCCC----CCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCC
Q psy11132         15 TNPERTLNVGERASLICSITKGD----IPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSA   76 (243)
Q Consensus        15 ~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~   76 (243)
                      .|..+.+.+|++|+|.|..+...    ....+.||+.  |+..            ....++.... ......|+|.+++.
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-SGTDFTLKISRVEA   86 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-CSSEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec-cCCcccCccCCCCc
Confidence            35556788999999999975321    2246899973  2211            1122333322 22357999999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|+|.|.|...
T Consensus        87 ~DsavYyCa~~   97 (113)
T d1n4xl_          87 EDLGIYYCFQG   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEEEEEC
Confidence            99999999654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.7e-07  Score=54.06  Aligned_cols=83  Identities=20%  Similarity=0.320  Sum_probs=50.1

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEee---eeceEEEEeecCCCCCeeE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVD---QYNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~---~~~~~l~i~~~~~~d~G~Y   82 (243)
                      +|.+.+.+....-..++.++|.|.+.+..|. ..|.|.++|..+......  .....+   ...+.|.|..-.......|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            4555443332222345678999999866554 599999999887543211  111111   1235566665555567799


Q ss_pred             EEEEEeCCC
Q psy11132         83 SCTVRNMVA   91 (243)
Q Consensus        83 ~C~~~~~~~   91 (243)
                      +|.+.+...
T Consensus        85 tC~V~H~~~   93 (102)
T d1q0xl2          85 SCQVTHEGH   93 (102)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEECCc
Confidence            999987543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.38  E-value=2.7e-06  Score=51.01  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Ee---c-------C--CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP---L-------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~---~-------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+..  ..   +       .  ...+... ........|.|.+++.+|++.|.|
T Consensus        10 l~~~~G~svtL~C~~-~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~-~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1op3k1          10 LSASVGDTITITCRA-SQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSG-SGSGTEFTLTISGLQFDDFATYHC   87 (106)
T ss_dssp             EEECTTCEEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-EEETTEEEEEEESCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceee-eccCCEEEEEEccccccCCCcEee
Confidence            456789999999987 44445679999732  11   0       0  1112222 223445789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        88 a~~~   91 (106)
T d1op3k1          88 QHYA   91 (106)
T ss_dssp             EEEC
T ss_pred             eeCC
Confidence            8764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.38  E-value=1.1e-06  Score=54.05  Aligned_cols=76  Identities=21%  Similarity=0.356  Sum_probs=50.3

Q ss_pred             cCCCCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------------cCCCceEEEEe-eeeceEEEEeecCC
Q psy11132         13 SPTNPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------------DNSAALSITHV-DQYNSMLVIDSVSA   76 (243)
Q Consensus        13 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~   76 (243)
                      ...+..+.+.+|++++|.|.+.+.. ....+.||+.  |+.+            ....++..... ......|.|.+++.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3345566788999999999985332 2346999972  2211            01234433332 22347999999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|+|.|.|....
T Consensus        85 ~Dsa~YyCA~~~   96 (120)
T d1hxma1          85 RDEGSYYCACDT   96 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCCceeecCccc
Confidence            999999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1e-06  Score=52.00  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceE-EEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALS-ITHVDQYNSMLVIDSVSARHSGNYSCTV   86 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   86 (243)
                      .+|.+...+.. .|..|++|+|.|..  ......+.++|+|.......... ..........+.|.+++..|+|.|+|..
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            35666666644 48899999999996  34455788888876432211110 0111112357999999999999999987


Q ss_pred             EeC
Q psy11132         87 RNM   89 (243)
Q Consensus        87 ~~~   89 (243)
                      ...
T Consensus        80 ~~~   82 (98)
T d1ugna2          80 YDS   82 (98)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            644

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.37  E-value=6.5e-07  Score=54.81  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC---------------CCCCeeEEe-eccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS---------------PRFPVNVSD-LDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~---------------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|++++|.|..........+.||+.  +....               ...+..... .......|.|.+++.+|+|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   89 (116)
T d1tvda_          10 QTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSA   89 (116)
T ss_dssp             EEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccc
Confidence            44678999999998754445668999972  21110               011222211 2233467999999999999


Q ss_pred             eEEEEEEccCc
Q psy11132        177 EYTCVASNTAA  187 (243)
Q Consensus       177 ~y~C~~~n~~g  187 (243)
                      .|.|.+....+
T Consensus        90 ~YyCa~~~~~~  100 (116)
T d1tvda_          90 TYYCAFTLPPP  100 (116)
T ss_dssp             EEEEEEECTTT
T ss_pred             cceeeEecCCC
Confidence            99999876544

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.36  E-value=4.5e-06  Score=50.58  Aligned_cols=74  Identities=12%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             CCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceeec-------CC-------CceEEEEeeeeceEEEEeecCCC
Q psy11132         14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLD-------NS-------AALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------~~-------~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      ..|....+.+|++++|.|... ......+.|||.  |+.+.       ..       ....+.........|.|...+.+
T Consensus         6 Q~P~~~~~~~G~~vtL~C~~~-~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~   84 (112)
T d1fo0b_           6 QNPRWRLVPRGQAVNLRCILK-NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (112)
T ss_dssp             EECSEEECCTTCCEEEEEEES-CTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCC
T ss_pred             eCCCeEEECCCCCEEEEEEEe-cCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCcc
Confidence            345566788999999999985 333457999984  32210       00       01111112223467999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |++.|.|....
T Consensus        85 dsa~Y~Ca~~~   95 (112)
T d1fo0b_          85 QGRTLYCTCSA   95 (112)
T ss_dssp             SCEEEEEEEES
T ss_pred             CCccEEEEEec
Confidence            99999998753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.36  E-value=3e-07  Score=56.02  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eee---------------cCCCceEEEEeeeeceEEEEeecCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYL---------------DNSAALSITHVDQYNSMLVIDSVSARH   78 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~---------------~~~~~~~~~~~~~~~~~l~i~~~~~~d   78 (243)
                      |....+.+|++++|.|....  ....+.||+..  +.+               .................|.|.+++.+|
T Consensus         5 P~~~~~~~G~svtL~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM--GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT--CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCEEEECCCCCEEEEEEEeC--CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            45567889999999999742  23479999832  111               001111211222234679999999999


Q ss_pred             CeeEEEEEEeCC
Q psy11132         79 SGNYSCTVRNMV   90 (243)
Q Consensus        79 ~G~Y~C~~~~~~   90 (243)
                      +|.|.|.+....
T Consensus        83 sa~YyCA~~~~~   94 (112)
T d2cdeb1          83 TSQYLCASSENI   94 (112)
T ss_dssp             CSEEEEEEECSS
T ss_pred             cccEEEEEecCC
Confidence            999999887543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.36  E-value=1e-06  Score=52.60  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC-----------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS-----------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ..+.+|++++|.|.. .......+.||+..  ....           ................|.|.+++.+|+|.|.|.
T Consensus         8 l~~~~G~svtl~C~~-~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           8 VSVSPGQTARITCSA-NALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            456789999999987 34444578999731  1110           001111122233457899999999999999998


Q ss_pred             EEcc
Q psy11132        182 ASNT  185 (243)
Q Consensus       182 ~~n~  185 (243)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.5e-06  Score=51.21  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Ee-----------cCC-CCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP-----------LSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~-----------~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+..  ..           ... ..+... ........|.|.+++.+|+|.|.|
T Consensus        11 l~~~~G~svtl~C~~-s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~-~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1d5il1          11 MYASLGERVTITCKA-SQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSG-SGSGQDYSLTISSLEYEDMGIYYC   88 (107)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-EEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEc-CCCCCCccceeEeccccCeEEEEEeccccccCcCCceee-cccCCEEEccccccCCcCCEEEEe
Confidence            346789999999987 34455678999731  11           011 111221 223345789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+...
T Consensus        89 a~~~~   93 (107)
T d1d5il1          89 LQYDE   93 (107)
T ss_dssp             EECSS
T ss_pred             eeccC
Confidence            86543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.4e-06  Score=51.33  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+.  |...           . ...+... ........|.|.+++.+|++.|.|
T Consensus        11 l~~~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~-~~~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1          11 MSTSLGNRVSVTCKA-SQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTG-SGSGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             EEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-EEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCCCceEEEeccCCcccEEEEEeccccccccCCCeee-cCCCCeeeeeechhheecceeEEE
Confidence            346789999999987 3444457999972  1110           0 1112222 223346789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1mexl1          89 QQYN   92 (107)
T ss_dssp             EECS
T ss_pred             eECC
Confidence            8654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.35  E-value=1.5e-06  Score=51.36  Aligned_cols=83  Identities=18%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EE-EEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SI-THVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+.+.+.. ....|+..+|.|.+.+..|. ..++|.++|..+..+... .. .+.+..........+..++...|+|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   82 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC   82 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEE
Confidence            45665543222 24467889999999865554 699999999987643211 11 1111111222223344556678999


Q ss_pred             EEEeCCC
Q psy11132         85 TVRNMVA   91 (243)
Q Consensus        85 ~~~~~~~   91 (243)
                      .+.+...
T Consensus        83 ~V~H~sl   89 (99)
T d1uvqa1          83 KVEHWGL   89 (99)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9987643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.35  E-value=4e-06  Score=49.43  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=44.3

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ...|+..+|.|.+.+.+| ...++|.++|..+......  .....++.........+..++...|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            446778899999976666 5799999999987643211  111222222222223344556668999998864

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.34  E-value=4.5e-06  Score=49.39  Aligned_cols=68  Identities=18%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..|+..+|.|.+.+.+| ...++|+++|..+......  .....++.   .+.|.+   ...+...|+|.+....-
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHWGL   89 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEECCC
Confidence            345778899999976667 5699999999987653211  11112221   233444   34555689999998643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.9e-06  Score=46.84  Aligned_cols=84  Identities=17%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             CcccccCCeEEEEEEeeCCCCCceeEEEE-CCe---eecCCCc--eEEEE-eeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         18 ERTLNVGERASLICSITKGDIPLTIKWLK-DGR---YLDNSAA--LSITH-VDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~---~~~~~~~--~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      ...+..|+.+.|.|.+.--..-|.++|.| +|.   ++.....  ..... .+.....|.+..+..+|.|.|+|.+.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            45688899999999997545567999997 333   2322111  11111 11224688999999999999999998665


Q ss_pred             Cc-ceeEEEEEE
Q psy11132         91 AE-DTQVQRLIV  101 (243)
Q Consensus        91 ~~-~~~~~~l~v  101 (243)
                      +. .+.++.+.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            53 345555544

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.33  E-value=1.8e-06  Score=51.94  Aligned_cols=86  Identities=15%  Similarity=0.158  Sum_probs=52.7

Q ss_pred             EEecCCCccCCC-CCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEE-Eeee---eceEEEEeecCCCC
Q psy11132          5 FSTVPPKLSPTN-PERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSIT-HVDQ---YNSMLVIDSVSARH   78 (243)
Q Consensus         5 ~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d   78 (243)
                      +...+|.+.+.+ ....+..+..++|.|.+.+..|. ..++|.++|..+......... ..+.   ..+.|.+.   .++
T Consensus         4 ~~~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~   80 (107)
T d1hxmb2           4 DADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKS   80 (107)
T ss_dssp             CSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGG
T ss_pred             CCCCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---ccc
Confidence            344577777663 34456678899999999865654 589999999876543221111 1111   12345443   444


Q ss_pred             Ce-eEEEEEEeCCCcc
Q psy11132         79 SG-NYSCTVRNMVAED   93 (243)
Q Consensus        79 ~G-~Y~C~~~~~~~~~   93 (243)
                      -| .|+|.+.+.....
T Consensus        81 w~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          81 LDKEHRCIVRHENNKN   96 (107)
T ss_dssp             GGSCEEEEEEETTSGG
T ss_pred             CCCeEEEEEEECCCCC
Confidence            33 7999999876543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=6.4e-07  Score=55.18  Aligned_cols=84  Identities=12%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             CCCCCCCcEEEEEEeecCC---CCCEEEEEeCC--Ee----c---------C---CC--CCeeEEe-eccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHGD---PPLTIRWLKDG--KP----L---------S---PR--FPVNVSD-LDSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~~--~~----~---------~---~~--~~~~~~~-~~~~~~~l~i~~~  170 (243)
                      ..+..|++++|.|......   ....+.|++..  ..    +         .   ..  .+..... .......|.|.++
T Consensus         9 v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (119)
T d1neua_           9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNL   88 (119)
T ss_dssp             EEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSC
T ss_pred             EEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCC
Confidence            3456799999999874222   24589998621  10    0         0   00  0111111 1122357999999


Q ss_pred             CCCCCeeEEEEEEccCcce--eeeEEEEEE
Q psy11132        171 SAAHSGEYTCVASNTAAQA--RYSSKLQVK  198 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~~g~~--~~~~~l~v~  198 (243)
                      +.+|+|.|.|.+.+..+..  ...+.|.|.
T Consensus        89 ~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          89 DYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             ChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999865433  334555553

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.33  E-value=8.8e-07  Score=53.76  Aligned_cols=73  Identities=12%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------------cCCCceEEEEe-eeeceEEEEeecCCCCC
Q psy11132         16 NPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------------DNSAALSITHV-DQYNSMLVIDSVSARHS   79 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~   79 (243)
                      |..+.+.+|++++|.|..+... ....+.|+|.  ++.+            ....+...... ......|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4456788999999999985332 2235899983  2211            01223333322 23357999999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999998764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.7e-07  Score=54.32  Aligned_cols=82  Identities=16%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             CCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEE------eecc---ceeEEEEeecCCCC
Q psy11132        105 PKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVS------DLDS---FSSLLSINSVSAAH  174 (243)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~------~~~~---~~~~l~i~~~~~~d  174 (243)
                      |.+....+....+..++.+.|.|.+.+.+| ...+.|+++|..+.........      ..++   ..+.|.|..-....
T Consensus         5 P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~   84 (108)
T d1ow0a2           5 PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKK   84 (108)
T ss_dssp             CEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHH
T ss_pred             CEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCC
Confidence            444333333345567889999999976677 4599999999987654322110      0111   12456665444444


Q ss_pred             CeeEEEEEEccC
Q psy11132        175 SGEYTCVASNTA  186 (243)
Q Consensus       175 ~g~y~C~~~n~~  186 (243)
                      ...|+|.+.+..
T Consensus        85 g~~ytC~V~H~s   96 (108)
T d1ow0a2          85 GDTFSCMVGHEA   96 (108)
T ss_dssp             TCCEEEEEECTT
T ss_pred             CCEEEEEEEeCC
Confidence            669999998865

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=7.8e-07  Score=54.35  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC------------CCCCeeEE-eeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS------------PRFPVNVS-DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... ......+.|||..  ..+.            ........ ........|.|.+++.+|+|.|.
T Consensus        11 v~v~~G~~vtL~C~~~-~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQ-STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY   89 (115)
T ss_dssp             EEEETTSCEEECEEEE-CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEe-CCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccce
Confidence            3456899999999985 4556679999732  1100            01111111 11223456999999999999999


Q ss_pred             EEEEccC
Q psy11132        180 CVASNTA  186 (243)
Q Consensus       180 C~~~n~~  186 (243)
                      |.+....
T Consensus        90 Ca~~~~~   96 (115)
T d1lp9e1          90 CALFLAS   96 (115)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9886543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.32  E-value=1.3e-06  Score=52.63  Aligned_cols=71  Identities=15%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             CCCcccccCCeEEEEEEeeCCCCCceeEEEEC--Ceee------------cCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132         16 NPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYL------------DNSAALSITHVDQYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   81 (243)
                      |..+.+.+|++++|.|... ......+.||+.  |..+            ....++..... .....|.|.+++.+|+|.
T Consensus         6 P~s~~~~~G~svtl~C~~~-~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~-~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGD-QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS-GTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CSEEEEETTSCCCEEEEET-TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEETTCCGGGCSE
T ss_pred             CCeeEECCCCCEEEEEECC-CCCCccEEEEecccccceeeeccccccccccccceeeecCC-CCEeeeeEcCccccCCce
Confidence            3456688999999999874 333346899972  2211            01223443322 235789999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|.+..
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998764

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.6e-06  Score=51.89  Aligned_cols=72  Identities=18%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             CCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEe-ecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        118 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..+.+++|.|.+.+.+|. ..++|+++|..+.......... .++   ..+.|.|..-.......|+|.+.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~   95 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTF   95 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeE
Confidence            456789999999766774 4899999999887543222111 121   12456665544445668999999975443

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-06  Score=52.03  Aligned_cols=70  Identities=20%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ..+..++|.|.+.+..|. ..|+|+++|..+.............    ..+.|.|..-.......|+|.+.+...
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            446689999999865654 4899999999886533222111111    134566665544556689999998643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=6.8e-07  Score=54.46  Aligned_cols=72  Identities=24%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC------C------CCCeeE-EeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS------P------RFPVNV-SDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~------~------~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|.. .+.....+.|||..  ....      .      ...... .........|.|.+++.+|+|.|.
T Consensus        10 v~v~~G~sv~L~C~~-s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Yy   88 (113)
T d2bnqd1          10 LSVPEGENLVLNCSF-TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL   88 (113)
T ss_dssp             EEEETTCCEEEEEEE-SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEE-ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEe
Confidence            345789999999998 45556679999822  1100      0      011111 111234578999999999999999


Q ss_pred             EEEEccCc
Q psy11132        180 CVASNTAA  187 (243)
Q Consensus       180 C~~~n~~g  187 (243)
                      |.+....+
T Consensus        89 Ca~~~~~~   96 (113)
T d2bnqd1          89 CAVRPTSG   96 (113)
T ss_dssp             EEEEESSS
T ss_pred             EeEecCCC
Confidence            99986544

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=6.5e-07  Score=54.68  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------C-CCC------eeE-EeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------P-RFP------VNV-SDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~-~~~------~~~-~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|..........+.||+.  +..+.      . ...      ... .........|.|.+++.+|+|.|
T Consensus        10 v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   89 (114)
T d2ak4d1          10 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVY   89 (114)
T ss_dssp             EEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCc
Confidence            34678999999998754445567899972  22110      0 000      111 11123356799999999999999


Q ss_pred             EEEEEccCc
Q psy11132        179 TCVASNTAA  187 (243)
Q Consensus       179 ~C~~~n~~g  187 (243)
                      .|.+....+
T Consensus        90 yCa~~~~~~   98 (114)
T d2ak4d1          90 FCALSGFYN   98 (114)
T ss_dssp             EEEEECSBT
T ss_pred             eEeCCCCCC
Confidence            998876554

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.31  E-value=1e-06  Score=53.84  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC--------CC-----CCeeEEe-eccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS--------PR-----FPVNVSD-LDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~--------~~-----~~~~~~~-~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|..........+.||+..  ..+.        ..     ....... .......|.|.+++.+|+|.|
T Consensus         9 v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1fo0a_           9 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVY   88 (115)
T ss_dssp             EEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccc
Confidence            446789999999987444445578999721  1100        00     1111211 123356799999999999999


Q ss_pred             EEEEEccCc
Q psy11132        179 TCVASNTAA  187 (243)
Q Consensus       179 ~C~~~n~~g  187 (243)
                      .|.+....+
T Consensus        89 yCa~~~~~~   97 (115)
T d1fo0a_          89 FCAMRGDYG   97 (115)
T ss_dssp             EEEEECCCT
T ss_pred             cceeecCCC
Confidence            999875543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.31  E-value=1e-06  Score=51.71  Aligned_cols=69  Identities=13%  Similarity=0.054  Sum_probs=47.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+..|.+++|.|..  ......+.++++|....................+.|..++..|+|.|.|.....
T Consensus        11 ~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            456789999999986  456778999998753221111111112223467999999999999999987654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.31  E-value=3.7e-06  Score=51.00  Aligned_cols=69  Identities=19%  Similarity=0.311  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCC-CCCEEEEEeCCE--e---c-------C--CCCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGD-PPLTIRWLKDGK--P---L-------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~--~---~-------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|...... ....+.||+...  .   +       .  ...+... ..+.....|.|.+++.+|++.|.
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSA-SKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEE-EEETTEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCccee-cCCCCeeeeEecccCcccCceEE
Confidence            4567899999999874332 245789997321  1   0       0  1111222 22344678999999999999999


Q ss_pred             EEEEc
Q psy11132        180 CVASN  184 (243)
Q Consensus       180 C~~~n  184 (243)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98864

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=2.2e-06  Score=51.45  Aligned_cols=68  Identities=13%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .......+.||+.  |...           . ....... ........|.|.+++.+|+|.|.|
T Consensus        11 ~~~~~G~~vtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~-~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d3cx5k1          11 LAASLGDRVTISCRA-SQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSG-SGSGTDYSLTISNLEPEDIATYFC   88 (107)
T ss_dssp             CCBCSSSCCEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCC-EEETTEEEEECSCCCSCCCSEEEE
T ss_pred             EEECCCCCEEEEEEc-CCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEE-EccCCEEEEEEeEeeecCCCcEEe
Confidence            557889999999987 4555567999973  1110           0 1111111 122335789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        89 a~~~   92 (107)
T d3cx5k1          89 QHHI   92 (107)
T ss_dssp             EECS
T ss_pred             eeCC
Confidence            7643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.2e-06  Score=52.63  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEE--e-e---eeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITH--V-D---QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~--~-~---~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+.+.+....-..++.++|.|.+.+..|. ..|+|.++|..+..........  . +   ...+.|.|..-.......
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            4554443322222346789999999865564 5999999998875432111110  0 0   113456666555445668


Q ss_pred             EEEEEEeCCCc
Q psy11132         82 YSCTVRNMVAE   92 (243)
Q Consensus        82 Y~C~~~~~~~~   92 (243)
                      |+|.+.+....
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1mjul2          85 YTCEATHKTST   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999876543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.30  E-value=2.5e-06  Score=49.99  Aligned_cols=65  Identities=15%  Similarity=0.243  Sum_probs=42.5

Q ss_pred             CCcEEEEEEeecCCCCCEEEEEeCCE--e---c---CCC-----CCeeEE-eeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        120 GARTRVICGVTHGDPPLTIRWLKDGK--P---L---SPR-----FPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       120 g~~~~l~C~~~~~~p~~~~~W~~~~~--~---~---~~~-----~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      |++++|.|.. .......+.||+...  .   +   ...     .+.... ........|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~-~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTY-SDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEE-ccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999998 455667899997221  1   0   100     011111 12223467999999999999999998754

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.9e-06  Score=51.87  Aligned_cols=75  Identities=15%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             CCcccccCCeEEEEEEeeCC-CCCceeEEEEC--Cee---e-c---C--------CCceEEEEe-eeeceEEEEeecCCC
Q psy11132         17 PERTLNVGERASLICSITKG-DIPLTIKWLKD--GRY---L-D---N--------SAALSITHV-DQYNSMLVIDSVSAR   77 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~---~-~---~--------~~~~~~~~~-~~~~~~l~i~~~~~~   77 (243)
                      +...+.+|++++|.|..+.. .....+.|+|.  ++.   + .   .        ..++.+... ......|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34678999999999998521 23447889983  221   1 0   0        123333322 123467999999999


Q ss_pred             CCeeEEEEEEeCCC
Q psy11132         78 HSGNYSCTVRNMVA   91 (243)
Q Consensus        78 d~G~Y~C~~~~~~~   91 (243)
                      |+|.|.|.......
T Consensus        83 Dsa~YyCa~~~~~~   96 (110)
T d1u9ka_          83 DSGLYRCVIYHPPN   96 (110)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             CCEEEEEEEeCCCC
Confidence            99999998865443

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=2.6e-06  Score=52.12  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=45.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Ee---c--------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP---L--------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~---~--------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .+.....+.||+..  ..   +        . ...... .........|.|.+++.+|+|.|.|
T Consensus        11 v~~~~G~svtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs-~~~~~~~~~L~I~~~~~~DsavYyC   88 (119)
T d1f3rb2          11 LSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFS-GSGSGTDYTLTISSLQPEDVATYFC   88 (119)
T ss_dssp             ECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEEEBTEEEEEECSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEe-CCCCcceeEEeeeecccccEEEEEeeccccCceeeeec-ccCCCCEEEEEcccCccCCCeEEEe
Confidence            457889999999987 34445579999731  11   0        0 111111 1223335679999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        89 a~~~   92 (119)
T d1f3rb2          89 YQYN   92 (119)
T ss_dssp             EEES
T ss_pred             eccC
Confidence            8654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.28  E-value=4.2e-06  Score=51.51  Aligned_cols=74  Identities=18%  Similarity=0.387  Sum_probs=48.4

Q ss_pred             CCCcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee-------------c----CCCceEEEEee-eeceEEEEeec
Q psy11132         16 NPERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL-------------D----NSAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~-------------~----~~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      +..+...+|++++|.|.+++.. ....+.|||.  ++.+             .    ...++.+.... .....|.|.++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            3446677899999999986322 3447899983  2111             0    12234433322 22467999999


Q ss_pred             CCCCCeeEEEEEEeC
Q psy11132         75 SARHSGNYSCTVRNM   89 (243)
Q Consensus        75 ~~~d~G~Y~C~~~~~   89 (243)
                      +.+|+|.|.|.....
T Consensus        88 ~~~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          88 EKQDIATYYCALWEA  102 (123)
T ss_dssp             CGGGCEEEEEEEEEE
T ss_pred             ccccCcEEEEeeeCC
Confidence            999999999987643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.28  E-value=2.3e-06  Score=51.57  Aligned_cols=69  Identities=14%  Similarity=0.266  Sum_probs=44.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|..........+.||+.  +....            ...... .........|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s-~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (108)
T d2fx7l1          11 QSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFS-GSGSGTDFTLTISRLEPEDFAVYYC   89 (108)
T ss_dssp             EEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE-EEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCcccee-eecCCCEEEEEehHheecccEEEee
Confidence            34678999999998732223456899973  21100            011111 1223345789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+.+
T Consensus        90 a~~~   93 (108)
T d2fx7l1          90 QQYG   93 (108)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            8754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.8e-07  Score=53.96  Aligned_cols=84  Identities=18%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             cCCCccCC-CCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEE--E---e-e---eeceEEEEeecCC
Q psy11132          8 VPPKLSPT-NPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSIT--H---V-D---QYNSMLVIDSVSA   76 (243)
Q Consensus         8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~--~---~-~---~~~~~l~i~~~~~   76 (243)
                      .||.+.+. +....+..|+.++|.|.+.+.+|. ..|+|+++|..+.........  .   . +   ...+.|.|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            35555543 333346678899999999866664 599999999987653221110  0   0 0   1134566655444


Q ss_pred             CCCeeEEEEEEeCCC
Q psy11132         77 RHSGNYSCTVRNMVA   91 (243)
Q Consensus        77 ~d~G~Y~C~~~~~~~   91 (243)
                      .....|+|.+.+...
T Consensus        83 ~~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          83 KKGDTFSCMVGHEAL   97 (108)
T ss_dssp             HHTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeCCC
Confidence            456699999987653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=3e-06  Score=48.99  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE-EEEeee----eceEEEEeecCCCCCee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS-ITHVDQ----YNSMLVIDSVSARHSGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~~~~d~G~   81 (243)
                      .||.+.+...   ...++.++|.|.+.+..|. ..++|.++|..+....... ......    ..+.|.+.   ..+...
T Consensus         2 ~pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~   75 (89)
T d2mhaa1           2 DSPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQY   75 (89)
T ss_dssp             BCCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTT
T ss_pred             CCCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCE
Confidence            4666665322   2346789999999865554 5899999998876433211 111111    12344443   444557


Q ss_pred             EEEEEEeCC
Q psy11132         82 YSCTVRNMV   90 (243)
Q Consensus        82 Y~C~~~~~~   90 (243)
                      |+|.+.+..
T Consensus        76 ytC~V~H~~   84 (89)
T d2mhaa1          76 YTCHVYHQG   84 (89)
T ss_dssp             CEEEEECSS
T ss_pred             EEEEEEECC
Confidence            999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.25  E-value=6.7e-06  Score=49.52  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--Ee---c--------C-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP---L--------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~---~--------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|.. .+.....+.||+..  ..   +        . ...... .........|.|.+++.+|+|.|.|
T Consensus        13 l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs-~~~~~~~~~L~I~~l~~~Dsa~YyC   90 (109)
T d1bwwa_          13 LSASVGDRVTITCQA-SQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFS-GSGSGTDYTFTISSLQPEDIATYYC   90 (109)
T ss_dssp             EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEe-cCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEE-eeCCCCEeEEEEeeceeCcCceEEE
Confidence            446789999999998 45545678999721  11   0        0 111121 1223345679999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        91 A~~~   94 (109)
T d1bwwa_          91 QQYQ   94 (109)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            8764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.25  E-value=2.4e-06  Score=50.21  Aligned_cols=71  Identities=17%  Similarity=0.359  Sum_probs=41.5

Q ss_pred             ccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE--EEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS--ITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..|+.++|.|.+.+..| ...++|.++|..+..+....  ..+.+..........+...+...|+|.+.+....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence            34677889999987666 46999999998775432111  1111111223333345667778999999876543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.9e-07  Score=54.44  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE--EEEee---eeceEEEEeecCCCCCee
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS--ITHVD---QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~--~~~~~---~~~~~l~i~~~~~~d~G~   81 (243)
                      .+|.+.+.+....-..++.++|.|.+.+..| ...+.|.++|..+.......  ....+   ...+.|.+..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            3565554433333334677999999986555 35899999998876532211  11111   112455555444334557


Q ss_pred             EEEEEEeCC
Q psy11132         82 YSCTVRNMV   90 (243)
Q Consensus        82 Y~C~~~~~~   90 (243)
                      |+|.+.+..
T Consensus        84 ytC~V~H~~   92 (102)
T d1rzfl2          84 YSCQVTHEG   92 (102)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8e-06  Score=47.57  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCC---eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP---VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..++|.|.+.+.+| ...++|+++|..+.....   ......+........-.+...+...|+|.+.+...
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            566899999976667 569999999998764321   11112222222223334455666789999998643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.24  E-value=5e-06  Score=50.23  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=44.9

Q ss_pred             CCCCCCCcEEEEEEeecCC---CCCEEEEEeC--CEecC-----------CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGD---PPLTIRWLKD--GKPLS-----------PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|....+.   ....+.||+.  |....           ................|.|.+++.+|+|.|
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccE
Confidence            4467899999999873222   2234899973  22111           111111222334467899999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+.+.
T Consensus        91 yCa~~~~   97 (111)
T d1j05a_          91 YCQQTNE   97 (111)
T ss_dssp             EEEECSS
T ss_pred             EEeecCC
Confidence            9987653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.1e-06  Score=52.37  Aligned_cols=69  Identities=20%  Similarity=0.451  Sum_probs=45.6

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ++.+.|.|.+.+.+| ...+.|+++|..+......  .....++.   .+.|.+..-.......|+|.+.+....
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS   94 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            567899999976666 5699999999877643221  11111221   345666655555677999999986543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.23  E-value=5e-06  Score=50.44  Aligned_cols=71  Identities=20%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             CCCCCCCcEEEEEEeecC-CCCCEEEEEeC--CE----ecCCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        115 DGLPEGARTRVICGVTHG-DPPLTIRWLKD--GK----PLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--~~----~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ..+.+|++++|.|..... .+...+.||+.  +.    .+........... ......|.|.+++.+|+|.|.|.+...
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          10 ATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence            345789999999998533 24567999962  22    1222222322222 223467999999999999999998654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.1e-06  Score=52.67  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             CcccccCCeEEEEEEeeCCCCC--ceeEEEECC--eeec-------C-------CCceEEEEeeeeceEEEEeecCCCCC
Q psy11132         18 ERTLNVGERASLICSITKGDIP--LTIKWLKDG--RYLD-------N-------SAALSITHVDQYNSMLVIDSVSARHS   79 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~--~~~~-------~-------~~~~~~~~~~~~~~~l~i~~~~~~d~   79 (243)
                      .+.+.+|+.++|.|....+...  ..+.|+|..  +...       .       ...............|.|.+++.+|+
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            3457789999999998533222  258899842  2110       0       00111111222357899999999999


Q ss_pred             eeEEEEEEe
Q psy11132         80 GNYSCTVRN   88 (243)
Q Consensus        80 G~Y~C~~~~   88 (243)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (118)
T d1i8lc_          88 GLYICKVEL   96 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeEec
Confidence            999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.9e-06  Score=49.44  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=44.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+..|.+++|.|..  ......+.++|+|........... .........+.|..+..+|+|.|+|......
T Consensus        13 ~~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          13 PVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             SEEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             CccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            456789999999986  345778999998875433211111 1112334679999999999999999876543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.23  E-value=2.1e-06  Score=51.96  Aligned_cols=70  Identities=21%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             CCCcccccCCeEEEEEEeeCC----CCCceeEEEEC--Ceee----------c--CCCceEEEEeeeeceEEEEeecCCC
Q psy11132         16 NPERTLNVGERASLICSITKG----DIPLTIKWLKD--GRYL----------D--NSAALSITHVDQYNSMLVIDSVSAR   77 (243)
Q Consensus        16 ~~~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~l~i~~~~~~   77 (243)
                      |..+.+.+|++|+|.|..+..    .....+.||+.  |..+          .  ...++.... ......|.|.+++.+
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~-~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG-SGTDFTLKISRVEAE   86 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC-CCCEEEEEECccccC
Confidence            556778999999999986421    22346899973  2211          1  122333222 223568999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |+|.|.|..
T Consensus        87 DsAvYYC~~   95 (112)
T d1ncwl1          87 DLGVYYCWQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             cCEeEEEEc
Confidence            999999954

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.23  E-value=4.5e-06  Score=50.46  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             CCCCCCCcEEEEEEeecC-CCCCEEEEEeC--CE----ecCCCCCeeEEee-ccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        115 DGLPEGARTRVICGVTHG-DPPLTIRWLKD--GK----PLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--~~----~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+..|++++|.|..... .....+.||+.  |.    .+........... ......|.|.+++.+|+|.|.|.+....
T Consensus         9 ~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_           9 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            345689999999987422 24568999972  21    2222222222222 2235689999999999999999887654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.7e-06  Score=51.14  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEe---e---eeceEEEEeecCCCCCee
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHV---D---QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~---~---~~~~~l~i~~~~~~d~G~   81 (243)
                      +|.+.+.+.......++.++|.|.+.+..|. ..|+|.+||..............   +   ...+.|.|..-.......
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            4555543322223346789999999865664 59999999987654322111100   0   113566666555455568


Q ss_pred             EEEEEEeCCCc
Q psy11132         82 YSCTVRNMVAE   92 (243)
Q Consensus        82 Y~C~~~~~~~~   92 (243)
                      |+|.+.+....
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1c5cl2          85 YACEVTHQGLS   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999976543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=4.6e-06  Score=48.17  Aligned_cols=65  Identities=15%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .++.+.|.|.+.+.+| ...++|.++|..+.......  ....++.   .+.|.+.   ..+...|+|.+....
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence            3578999999975566 56899999999886543221  1111221   2334443   334457999998754

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.21  E-value=6.3e-06  Score=49.42  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             CCCccccccCCCCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEE-eecc-c--eeEEEEeecCCCC-Cee
Q psy11132        104 PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVS-DLDS-F--SSLLSINSVSAAH-SGE  177 (243)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~-~~~~-~--~~~l~i~~~~~~d-~g~  177 (243)
                      +|.+....+....+..++.+.|.|.+.+.+| ...++|+++|..+......... ..++ +  .+.|.+   ..++ ...
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v---~~~~w~~~   84 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV---PEKSLDKE   84 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE---CTGGGGSC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE---ecccCCCe
Confidence            4555544444344566789999999976677 5589999999877643322111 1122 1  233444   3334 337


Q ss_pred             EEEEEEccCcce
Q psy11132        178 YTCVASNTAAQA  189 (243)
Q Consensus       178 y~C~~~n~~g~~  189 (243)
                      |+|.+.+.....
T Consensus        85 ytC~V~H~s~~~   96 (107)
T d1hxmb2          85 HRCIVRHENNKN   96 (107)
T ss_dssp             EEEEEEETTSGG
T ss_pred             EEEEEEECCCCC
Confidence            999999865443

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.21  E-value=1.3e-05  Score=47.49  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=45.2

Q ss_pred             cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132         21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVAED   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   93 (243)
                      +..|+..+|.|.+.+..|. ..++|.+||..+............++    .+.|.   +..++...|+|.+.+.....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~---v~~~~~~~ytC~V~H~~l~~   89 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLN---FTPEPSDIFSCIVTHEPDRY   89 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEE---ECCCTTCCEEEEEEETTTTE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEE---EecCCCCEEEEEEEeCCCCC
Confidence            3457888999999865664 69999999988754433333222211    12333   34556668999999875443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.1e-07  Score=53.38  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=45.7

Q ss_pred             CCCCCCcEEEEEEeecCCC---CCEEEEEeCCEecCCCCC----------eeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132        116 GLPEGARTRVICGVTHGDP---PLTIRWLKDGKPLSPRFP----------VNVSDLDSFSSLLSINSVSAAHSGEYTCVA  182 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  182 (243)
                      +...|+++.|.|.......   ...+.|.+++..+.....          ...........+|.|.+++.+|+|.|.|.+
T Consensus         5 t~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V   84 (105)
T d1dr9a1           5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVV   84 (105)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEE
T ss_pred             EEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEE
Confidence            3467999999998732221   246788887754321000          001111122467999999999999999999


Q ss_pred             EccCc
Q psy11132        183 SNTAA  187 (243)
Q Consensus       183 ~n~~g  187 (243)
                      .+..+
T Consensus        85 ~~~~~   89 (105)
T d1dr9a1          85 LKYEK   89 (105)
T ss_dssp             EECCT
T ss_pred             EeCCC
Confidence            86543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.3e-07  Score=53.97  Aligned_cols=66  Identities=17%  Similarity=0.267  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      ..+..|++++|.|..  ..+...+.++++|........  ..........+.|.++..+|+|.|+|....
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~--~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITR--IPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHT--SCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEE--ccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            456789999999986  355678999998753210000  001112246799999999999999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.19  E-value=3.8e-06  Score=50.98  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             CCCCCCCcEEEEEEeecCC-----CCCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGD-----PPLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|++++|.|......     ....+.||+.  |..+           . ...... .........|.|.+++.+|+
T Consensus        11 v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s-~~~s~~~~~L~I~~l~~~Ds   89 (113)
T d1q9ra1          11 LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFT-GSGSGTDFTLTITSVQAEDL   89 (113)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEE-EEEETTEEEEEESSCCGGGC
T ss_pred             EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEE-EeCCCCeEeEEecccccCCC
Confidence            3457899999999863211     1234899973  2110           0 111122 22234456799999999999


Q ss_pred             eeEEEEEEc
Q psy11132        176 GEYTCVASN  184 (243)
Q Consensus       176 g~y~C~~~n  184 (243)
                      |.|.|.+..
T Consensus        90 a~YyCA~~~   98 (113)
T d1q9ra1          90 AVYYCKQSY   98 (113)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEecccC
Confidence            999998653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=7.3e-06  Score=49.30  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec-----------C-CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL-----------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~-----------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|....+..  ...+.||+.  |...           . ...+.... .......|.|.+++.+|+|.|
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s-~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS-LIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEE-EETTEEEEEEESCCGGGCEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeec-ccccceeeecCCCCccccEeE
Confidence            34678999999999843332  224889972  2111           0 11122222 234467899999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+...
T Consensus        89 yCa~~~~   95 (110)
T d1oaql_          89 FCALWYS   95 (110)
T ss_dssp             EEEEEET
T ss_pred             EEEcccC
Confidence            9997653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.18  E-value=9e-06  Score=47.70  Aligned_cols=71  Identities=17%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ..|+..+|.|.+.+.+| ...+.|.++|..+.......  ....++..+......+..++...|+|.+......
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence            34667789999977677 57999999998766432211  1122222233333345666777999999986543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.18  E-value=4.5e-06  Score=50.48  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             CCCCCCCcEEEEEEeecCC-CCCEEEEEeC--CEec------------CCCCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGD-PPLTIRWLKD--GKPL------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|....+. ....+.||+.  +...            ....+... ..+.....|.|.+++.+|+|.|.
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSG-SKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEE-EEETTEEEEEESSCCGGGCSEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceee-eCCCCEeeeEEeeeccccCcceE
Confidence            5567899999999874322 2346999963  1110            01111222 22344578999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            988653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.18  E-value=7.6e-06  Score=48.81  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--e-----------cC-CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--P-----------LS-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~-----------~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... . ....+.||+...  .           .. ...... .........|.|.+++.+|+|.|.|
T Consensus        10 l~~~~G~~vtl~C~~s-~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (104)
T d1yqvl1          10 MSASPGEKVTMTCSAS-S-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFS-GSGSGTSYSLTISSMETEDAATYYC   86 (104)
T ss_dssp             EEECTTCCEEEEEEES-S-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEeC-C-CCCccEEEEeeccCceEEEEecccccCCCcCceEE-EecCCCEEEEEecccCcccCCeEEE
Confidence            3467899999999863 3 334579997321  0           00 011111 1223345789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        87 a~~~   90 (104)
T d1yqvl1          87 QQWG   90 (104)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            7643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=8.1e-06  Score=49.06  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEe---c-------C--CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKP---L-------S--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... ......+.||+.  +..   +       .  ...... .........|.|.+++.+|+|.|.|
T Consensus        11 l~~~~G~svtL~C~~s-~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs-~~~~~~~~~L~I~~~~~~DSa~YyC   88 (109)
T d1mqkl_          11 LSASVGETVTITCRAS-ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFS-GSGSGTQFSLKINSLLPEDFGSYYC   88 (109)
T ss_dssp             EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEeC-CCcCcccceeeccccCCCeEEEEeeccccCCcCCCEE-EeccCCEEEEEEccccccCCeeEEE
Confidence            3456899999999884 444556999972  111   0       0  011121 1223446789999999999999999


Q ss_pred             EEEc
Q psy11132        181 VASN  184 (243)
Q Consensus       181 ~~~n  184 (243)
                      .+..
T Consensus        89 A~~~   92 (109)
T d1mqkl_          89 QHHY   92 (109)
T ss_dssp             EECS
T ss_pred             eeeC
Confidence            8764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=2.5e-06  Score=52.03  Aligned_cols=69  Identities=22%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------CCCC--------eeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------PRFP--------VNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~~~~--------~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|... ......+.||+.  +....      ....        ............|.|.+++.+|+|.|
T Consensus        10 v~v~~G~svtl~C~~~-~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYS-YSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY   88 (115)
T ss_dssp             EEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEc-CCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence            4467899999999984 445667899972  21100      0000        00111122346799999999999999


Q ss_pred             EEEEEc
Q psy11132        179 TCVASN  184 (243)
Q Consensus       179 ~C~~~n  184 (243)
                      .|.+..
T Consensus        89 yCa~~~   94 (115)
T d1i9ea_          89 FCAVSG   94 (115)
T ss_dssp             EEEEEE
T ss_pred             cccccC
Confidence            998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=6.7e-06  Score=50.28  Aligned_cols=72  Identities=18%  Similarity=0.280  Sum_probs=48.1

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec---------------C--CCCCeeEEeeccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL---------------S--PRFPVNVSDLDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~---------------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|++++|.|.. .+.....+.||+.  |..+               .  ................|.|.+++.+|+
T Consensus        11 ~~~~~G~~v~L~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          11 VIVKSGTSVKIECRS-LDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EEECTTCCEEEEEEE-CSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGC
T ss_pred             EEEcCCCCEEEEEEE-cCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccC
Confidence            346789999999997 4555678999972  2110               0  011122222333356799999999999


Q ss_pred             eeEEEEEEccCc
Q psy11132        176 GEYTCVASNTAA  187 (243)
Q Consensus       176 g~y~C~~~n~~g  187 (243)
                      |.|.|.+....+
T Consensus        90 a~YyCa~~~~~~  101 (118)
T d2ij0c1          90 GFYVCSALAGSG  101 (118)
T ss_dssp             EEEEEEEECSSC
T ss_pred             ceEEEEEecCCC
Confidence            999999875443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=3e-06  Score=51.46  Aligned_cols=72  Identities=22%  Similarity=0.402  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCC--EecC------C------CCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDG--KPLS------P------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~------~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... . ....+.||+..  ..+.      .      ...............|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~G~~vtl~C~~~-~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          11 LSLHEGTDSALRCNFT-T-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEETTCCEEEEEEES-S-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEEe-c-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            3456899999999974 3 34579999822  1100      0      0000111112234679999999999999999


Q ss_pred             EEEccCcc
Q psy11132        181 VASNTAAQ  188 (243)
Q Consensus       181 ~~~n~~g~  188 (243)
                      .+....+.
T Consensus        89 a~~~~~~~   96 (113)
T d1h5ba_          89 AAEASSGS   96 (113)
T ss_dssp             EEECSSSS
T ss_pred             EecCCCCC
Confidence            98765543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=3.4e-07  Score=53.98  Aligned_cols=72  Identities=24%  Similarity=0.398  Sum_probs=47.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEE-eeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVS-DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... . ....+.||+.  +..+.            ...+.... ........|.|.+++.+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~-~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYK-T-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCS-S-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEe-C-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            4678999999999873 3 3457999973  22111            01111111 11223467999999999999999


Q ss_pred             EEEEccCcc
Q psy11132        180 CVASNTAAQ  188 (243)
Q Consensus       180 C~~~n~~g~  188 (243)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            998766554

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.15  E-value=1.4e-06  Score=51.91  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEE-EEee---eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSI-THVD---QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~-~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .++.++|.|.+.+..|. ..++|.++|........... ...+   ...+.|.|..-.......|+|.+.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            57789999999765554 69999999976543111100 0111   1135566655544455689999987553

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.15  E-value=3.5e-05  Score=45.57  Aligned_cols=74  Identities=23%  Similarity=0.384  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccce-eEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132        117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFS-SLLSINSVSAAHSGEYTCVASNTAAQAR  190 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~n~~g~~~  190 (243)
                      +..|+..+|.|.+.+.+| ...+.|.++|..+............... .....-.+..++...|+|.+....-...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCCCCC
Confidence            345788899999976677 5799999999987654433332222221 1111123345566689999999754433

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2.6e-06  Score=50.59  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE-EEEee---eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS-ITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~-~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ..+.++|.|.+.+..| ...+.|.++|..+....... ....+   ...+.|.+..-.......|+|.+.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            4567999999986555 46999999998765322111 11111   1235566655544556789999987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.15  E-value=1.2e-05  Score=48.50  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             CCCCCCCcEEEEEEeecCCC---CCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDP---PLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|....+..   ...+.||+.  |....            ...+... ........|.|.+++.+|++.
T Consensus        11 ~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~-~~~~~~~~L~I~~~~~~DsA~   89 (111)
T d2gsia1          11 LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSG-SGSGTDFTLNIHPVEEEDAAT   89 (111)
T ss_dssp             EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-EEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEE-ecCCCchhcccccccccCCce
Confidence            34578999999998742222   234899973  21110            1112221 223345789999999999999


Q ss_pred             EEEEEEcc
Q psy11132        178 YTCVASNT  185 (243)
Q Consensus       178 y~C~~~n~  185 (243)
                      |.|.+...
T Consensus        90 YyCa~~~~   97 (111)
T d2gsia1          90 YYCSHIRE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99987644

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=2.2e-06  Score=51.92  Aligned_cols=70  Identities=17%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------CC------CCe-eEEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------PR------FPV-NVSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~~------~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... ......+.||+.  +....      ..      ... ...........|.|.+++.+|+|.|.
T Consensus         9 ~~~~~G~~vtl~C~~~-~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (110)
T d1u3ha1           9 LTVWEGETAILNCSYE-NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
T ss_dssp             EEEETTSCEEEEEEEC-CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred             EEEcCCCCEEEEEEec-CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence            3456899999999884 444557999973  21110      00      001 11112233567999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+...
T Consensus        88 Ca~~~~   93 (110)
T d1u3ha1          88 CAASAN   93 (110)
T ss_dssp             ECCEES
T ss_pred             eeecCC
Confidence            998643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.14  E-value=1.3e-05  Score=48.31  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec--------------C-CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL--------------S-PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~--------------~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|... + ....+.|||.  |...              . ................|.|.+++.+|+|.
T Consensus        11 ~~~~~G~~vtl~C~~s-~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1          11 KVAVTGEKVTLSCQQT-N-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             EEECTTCCEEEEEEES-S-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEcCCCCEEEEEEEC-C-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            3457899999999874 3 3457999982  2110              0 01112222223345779999999999999


Q ss_pred             EEEEEEc
Q psy11132        178 YTCVASN  184 (243)
Q Consensus       178 y~C~~~n  184 (243)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9998764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.1e-05  Score=49.33  Aligned_cols=69  Identities=13%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             CCCCCCcEEEEEEeecCCCCC--EEEEEeC--CEecC--------------CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        116 GLPEGARTRVICGVTHGDPPL--TIRWLKD--GKPLS--------------PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--~~~~~--------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      .+.+|++++|.|....+....  .+.||+.  ++...              ................|.|.+++.+|+|.
T Consensus        10 ~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   89 (117)
T d1dqta_          10 LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGL   89 (117)
T ss_dssp             ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEe
Confidence            456899999999985443333  4789973  22110              00111112223345789999999999999


Q ss_pred             EEEEEEc
Q psy11132        178 YTCVASN  184 (243)
Q Consensus       178 y~C~~~n  184 (243)
                      |.|.+..
T Consensus        90 YyCa~~~   96 (117)
T d1dqta_          90 YLCKVEL   96 (117)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9998864

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-06  Score=51.00  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEE-ee---eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITH-VD---QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~-~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .++.++|.|.+.+..| ...++|.++|............. .+   ...+.|.+..-.......|+|.+.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            4678999999986555 46999999998765321111111 11   1134566665544555689999998654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.2e-06  Score=49.22  Aligned_cols=75  Identities=11%  Similarity=0.063  Sum_probs=44.4

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee-EEeeccc---eeEEEEeecCCC--CCeeEEEEEEccCccee
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF---SSLLSINSVSAA--HSGEYTCVASNTAAQAR  190 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~--d~g~y~C~~~n~~g~~~  190 (243)
                      ...+.+.|.|.+.+.+| ...++|.+++.......... ....++.   .+.|.+......  ....|+|.+.+..+...
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            34678899999976677 57999999887654322111 1111221   244555544432  22479999999766554


Q ss_pred             ee
Q psy11132        191 YS  192 (243)
Q Consensus       191 ~~  192 (243)
                      ..
T Consensus        99 ~~  100 (105)
T d1dn0b2          99 KN  100 (105)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=3.5e-06  Score=51.00  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------C------CCCee-EEeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------P------RFPVN-VSDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~------~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... ......+.||+.  |....      .      ..... ..........|.|.+++.+|+|.|.
T Consensus        10 ~~~~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1bd2d1          10 LSVQEGRISILNCDYT-NSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF   88 (111)
T ss_dssp             EEEETTSCEEEEEEEC-CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeC-CCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence            3456899999999874 555567899972  22110      0      01111 1122234678999999999999999


Q ss_pred             EEEEc
Q psy11132        180 CVASN  184 (243)
Q Consensus       180 C~~~n  184 (243)
                      |.+..
T Consensus        89 Ca~~~   93 (111)
T d1bd2d1          89 CAAME   93 (111)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98864

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.11  E-value=4.5e-06  Score=50.17  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC----------C-CCCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS----------P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~----------~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ..+.+|++++|.|.. .......+.||+.  +....          . ...............|.|.+++.+|++.|.|.
T Consensus        10 l~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1          10 VSVAPGQTARITCGG-NNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEc-CCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            456789999999986 3434457899963  21110          0 01111122334467899999999999999999


Q ss_pred             EEcc
Q psy11132        182 ASNT  185 (243)
Q Consensus       182 ~~n~  185 (243)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=3.6e-06  Score=50.08  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEe-e---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHV-D---QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~-~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .++.++|.|.+.+..|. ..++|.++|.+............ +   ...+.|.|..-.......|+|.+.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            35689999999866554 69999999987643211111111 1   11345666655555566899999876443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.10  E-value=4.5e-06  Score=50.87  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------CC-------CCeeEE-eeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------PR-------FPVNVS-DLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~~-------~~~~~~-~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|... ......+.||+.  +..+.      ..       ...... ........|.|.+++.+|+|.|
T Consensus        10 v~~~~G~~vtl~C~~s-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYS-SSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEY   88 (115)
T ss_dssp             EEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEeC-CCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccc
Confidence            4467899999999984 445568999972  21110      00       011111 1112235699999999999999


Q ss_pred             EEEEEccC
Q psy11132        179 TCVASNTA  186 (243)
Q Consensus       179 ~C~~~n~~  186 (243)
                      .|.+....
T Consensus        89 yCa~~~~~   96 (115)
T d1j8hd1          89 FCAVSESP   96 (115)
T ss_dssp             EEEEESST
T ss_pred             eeeecCCC
Confidence            99997643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.10  E-value=1.9e-05  Score=45.98  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeE---EeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNV---SDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +..+.|.|.+.+.+| ...++|+++|..+........   ...++.......-.+..++...|+|.+.....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECCC
Confidence            467899999976666 669999999998875432211   11121111112222334455589999987543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=5.6e-06  Score=48.43  Aligned_cols=81  Identities=21%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE--EEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS--ITHVDQYNSMLVIDSVSARHSGNYSC   84 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C   84 (243)
                      .||.+.+...   ...++.++|.|.+.+..|. ..++|.++|..+.......  ....+..........+...+...|+|
T Consensus         2 ~PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC   78 (95)
T d1k5na1           2 DPPKTHVTHH---PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTC   78 (95)
T ss_dssp             BCCEEEEEEE---EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred             cCCccEEEec---cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEE
Confidence            4666655321   1235689999999865554 5899999998876532211  11111111222222344555668999


Q ss_pred             EEEeCCC
Q psy11132         85 TVRNMVA   91 (243)
Q Consensus        85 ~~~~~~~   91 (243)
                      .+.+...
T Consensus        79 ~V~H~~L   85 (95)
T d1k5na1          79 HVQHEGL   85 (95)
T ss_dssp             EEECTTC
T ss_pred             EEEECcC
Confidence            9997543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=9.3e-07  Score=52.73  Aligned_cols=69  Identities=17%  Similarity=0.395  Sum_probs=43.6

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ++.+.|.|.+.+.+| ...+.|.++|..+.......  ....++.   .+.|.+..........|+|.+.+....
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST   94 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            567899999976566 56999999999877542211  1112221   244555443333456899999986543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.08  E-value=4.4e-07  Score=54.38  Aligned_cols=85  Identities=18%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEE-eee---eceEEEEeecCCCCCeeE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITH-VDQ---YNSMLVIDSVSARHSGNY   82 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~G~Y   82 (243)
                      .+|.+.+.+....-..++.++|.|.+.+..|. ..|.|.++|..+.......... .+.   ..+.|.+..-...+...|
T Consensus         4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~y   83 (104)
T d1nfde2           4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRV   83 (104)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEE
Confidence            35665554333222346779999999865654 5999999999876432211111 111   124455554444556689


Q ss_pred             EEEEEeCCCc
Q psy11132         83 SCTVRNMVAE   92 (243)
Q Consensus        83 ~C~~~~~~~~   92 (243)
                      +|.+.+....
T Consensus        84 tC~V~H~~~~   93 (104)
T d1nfde2          84 SCQVTHEGET   93 (104)
T ss_dssp             EEEEECTTTT
T ss_pred             EEEEEECCCc
Confidence            9999876543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.08  E-value=2.5e-05  Score=47.10  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             CCCCCCCcEEEEEEeecC----CCCCEEEEEeC--CEec-----------CCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHG----DPPLTIRWLKD--GKPL-----------SPRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~--~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|....+    .....+.||+.  |...           .................|.|.+++.+|++.
T Consensus        11 lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAv   90 (112)
T d1mjul1          11 VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGV   90 (112)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCce
Confidence            446789999999987422    12456899862  2110           111111112223345779999999999999


Q ss_pred             EEEEEE
Q psy11132        178 YTCVAS  183 (243)
Q Consensus       178 y~C~~~  183 (243)
                      |.|...
T Consensus        91 YyCa~~   96 (112)
T d1mjul1          91 YYCLQH   96 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999644

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=2.9e-06  Score=50.37  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=42.5

Q ss_pred             ccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEee--eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVD--QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..++.++|.|.+.+..| ...|.|.+++..............+  ...+.|.|..-.. +.|.|+|.+.+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            35789999999986555 4699998877543211111111111  1235666665544 367899999986544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.07  E-value=1.2e-05  Score=48.60  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CCCCCCCcEEEEEEeecCC--CCCEEEEEeCC--Eec------------CCCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGD--PPLTIRWLKDG--KPL------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|....+.  ....+.||+..  ..+            ....... .........|.|.+++.+|++.|
T Consensus        10 ~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1          10 VSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFS-GSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE-EEEETTEEEEEECSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEE-EECCCCEeeEEeCcCccccCEEE
Confidence            4567899999999874322  23458999732  111            0111111 22233467899999999999999


Q ss_pred             EEEEEccC
Q psy11132        179 TCVASNTA  186 (243)
Q Consensus       179 ~C~~~n~~  186 (243)
                      .|.+.+..
T Consensus        89 yCa~~~~~   96 (112)
T d1lgva1          89 YCSSYDGS   96 (112)
T ss_dssp             EEEEECSS
T ss_pred             EEeeecCC
Confidence            99887543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.07  E-value=2.5e-06  Score=50.08  Aligned_cols=66  Identities=14%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      .++.++|.|.+.+..|. ..++|++++...............++    .+.|.+.   ..+...|+|.+.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCCC
Confidence            45689999999876675 49999999987654322111111111    2344443   4456689999987653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.07  E-value=7.8e-06  Score=47.71  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             cCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE--EEEeee-eceEEEEeecCCCCCeeEE
Q psy11132          8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS--ITHVDQ-YNSMLVIDSVSARHSGNYS   83 (243)
Q Consensus         8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~~~-~~~~l~i~~~~~~d~G~Y~   83 (243)
                      .||.+.+....   ..++.++|.|.+.+..|. ..++|.++|..+.......  ...... .........+...+...|+
T Consensus         2 vpP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~yt   78 (94)
T d1hyrc1           2 VPPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFT   78 (94)
T ss_dssp             BCCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEE
T ss_pred             cCCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEE
Confidence            46665543222   235678999999865554 5999999998876533211  111111 1112222234445556899


Q ss_pred             EEEEeCC
Q psy11132         84 CTVRNMV   90 (243)
Q Consensus        84 C~~~~~~   90 (243)
                      |.+.+..
T Consensus        79 C~V~H~~   85 (94)
T d1hyrc1          79 CYMEHSG   85 (94)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9998753

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.07  E-value=2.7e-05  Score=47.04  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             CCCCCCCcEEEEEEeecCC----CCCEEEEEeC--CEe-----------cCC-CCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGD----PPLTIRWLKD--GKP-----------LSP-RFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~--~~~-----------~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|++++|.|....+.    ....+.||+.  |..           ... ..... .........|.|.+++.+|++
T Consensus        12 ~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs-~~~~~~~~~L~I~~~~~~Dsa   90 (113)
T d1n4xl_          12 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFS-GSGSGTDFTLKISRVEAEDLG   90 (113)
T ss_dssp             EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEE-EEECSSEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCee-eeccCCcccCccCCCCcccCE
Confidence            4467899999999873221    2246899972  111           011 11111 122344578999999999999


Q ss_pred             eEEEEEEc
Q psy11132        177 EYTCVASN  184 (243)
Q Consensus       177 ~y~C~~~n  184 (243)
                      .|.|...+
T Consensus        91 vYyCa~~~   98 (113)
T d1n4xl_          91 IYYCFQGS   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            99997554

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.06  E-value=1e-05  Score=48.88  Aligned_cols=70  Identities=17%  Similarity=0.286  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC------------CCCCeeEE-eeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS------------PRFPVNVS-DLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|... +..  ..-+.|++.  +..+.            ...+.... ........|.|.+++.+|++.
T Consensus        10 ~sv~~G~svtL~C~~s-~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_          10 VSESPGKTVTISCTRS-SGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEECTTSCEEEEEEES-SSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eEECCCCCEEEEEEEC-CCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            4567899999999984 432  235899973  21100            11112222 223346789999999999999


Q ss_pred             EEEEEEcc
Q psy11132        178 YTCVASNT  185 (243)
Q Consensus       178 y~C~~~n~  185 (243)
                      |.|.+.+.
T Consensus        89 YyCA~~~~   96 (111)
T d1cd0a_          89 YYCQSYDA   96 (111)
T ss_dssp             EEEEEEET
T ss_pred             EEEeeccC
Confidence            99987653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=7.1e-06  Score=48.61  Aligned_cols=71  Identities=18%  Similarity=0.205  Sum_probs=43.4

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeecc--ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDS--FSSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..++.+.|.|.+.+.+| ...+.|.+++..............+.  ..+.|.|..-.. +.|.|+|.+.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            35789999999976566 57999988775432111111111111  135566665444 3578999999865543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.9e-06  Score=50.54  Aligned_cols=72  Identities=22%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             CCCCCCCcEEEEEEeec-CCCCCEEEEEeC--CEe---c---CCC---------CCeeEEee-ccceeEEEEeecCCCCC
Q psy11132        115 DGLPEGARTRVICGVTH-GDPPLTIRWLKD--GKP---L---SPR---------FPVNVSDL-DSFSSLLSINSVSAAHS  175 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~-~~p~~~~~W~~~--~~~---~---~~~---------~~~~~~~~-~~~~~~l~i~~~~~~d~  175 (243)
                      ..+.+|++++|.|.... ......+.|+|.  +..   +   ...         .+...... ......|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45678999999998731 123457889973  211   0   000         01112221 22346799999999999


Q ss_pred             eeEEEEEEccC
Q psy11132        176 GEYTCVASNTA  186 (243)
Q Consensus       176 g~y~C~~~n~~  186 (243)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999886543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.7e-05  Score=40.77  Aligned_cols=58  Identities=28%  Similarity=0.529  Sum_probs=40.6

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      ..|..+.|+|..+..... .--+|.|+|+.+.+.....      ....+.|..  .+++|.|.|++.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~------~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------QKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC------SEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC------CceEEEEec--CCCCceEEEEEc
Confidence            458899999999754333 3678999999998743211      123345543  678999999975

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6e-06  Score=48.32  Aligned_cols=68  Identities=16%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ++.+.|.|.+.+.+| ...++|.++|..+.......  ....++.........+...+...|+|.+.....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            467899999976666 66899999999876532221  111122222222223344555689999998643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.8e-06  Score=50.88  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CCCCCCCcEEEEEEeecC---C---CCCEEEEEeCCEecC---------------C--CCCeeEEee-ccceeEEEEeec
Q psy11132        115 DGLPEGARTRVICGVTHG---D---PPLTIRWLKDGKPLS---------------P--RFPVNVSDL-DSFSSLLSINSV  170 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~---~---p~~~~~W~~~~~~~~---------------~--~~~~~~~~~-~~~~~~l~i~~~  170 (243)
                      .++.+|.++.|.|.....   .   ....+.|++....-.               .  ..+...... ......|.|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            456789999999987411   1   124678987533211               0  011222211 223567999999


Q ss_pred             CCCCCeeEEEEEEcc
Q psy11132        171 SAAHSGEYTCVASNT  185 (243)
Q Consensus       171 ~~~d~g~y~C~~~n~  185 (243)
                      +.+|+|.|.|.+...
T Consensus        91 ~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          91 RMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChHHCEEEEEEEEeC
Confidence            999999999999754

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.03  E-value=9.5e-06  Score=47.48  Aligned_cols=65  Identities=11%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             CCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeE-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNV-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .++.++|.|.+.+.+|. ..+.|++++..+........ ...++.   .+.|.+.   .++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            45689999999877774 49999999987764432211 222222   2334443   345568999999865

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=49.12  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec------CCC------CCeeE-EeeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL------SPR------FPVNV-SDLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~------~~~------~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... + ....+.||+.  |..+      ...      ..... .........|.|.+++.+|+|.|.
T Consensus        10 ~~~~~G~svtl~C~~s-~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1          10 LSIQEGENLTVYCNSS-S-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             EEEETTCCEEEEEECS-S-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEC-C-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            4467899999999874 3 3447999972  1110      000      01111 112234577999999999999999


Q ss_pred             EEEEccCccee--eeEEEEEE
Q psy11132        180 CVASNTAAQAR--YSSKLQVK  198 (243)
Q Consensus       180 C~~~n~~g~~~--~~~~l~v~  198 (243)
                      |.+....+...  .-..|.|.
T Consensus        88 Ca~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          88 CAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EEEECTTSSEEECCCEEEEEE
T ss_pred             ccccCCCCCcEECCCEEEEEe
Confidence            98875443221  22456665

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.02  E-value=3.6e-06  Score=51.05  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC----------CCCC-eeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS----------PRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCV  181 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~----------~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  181 (243)
                      ..+.+|++++|.|..........+.||+.  |..+.          .... ......+.....|.|.+++.+|+|.|.|.
T Consensus         8 ~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   87 (112)
T d1kgcd1           8 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCI   87 (112)
T ss_dssp             EEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeee
Confidence            34568999999998732233345899983  22111          0000 11111233356799999999999999998


Q ss_pred             EEccC
Q psy11132        182 ASNTA  186 (243)
Q Consensus       182 ~~n~~  186 (243)
                      +....
T Consensus        88 ~~~~~   92 (112)
T d1kgcd1          88 LPLAG   92 (112)
T ss_dssp             CCCCS
T ss_pred             EecCC
Confidence            76543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=4.8e-06  Score=51.65  Aligned_cols=84  Identities=15%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             cCCCccCC-CCCcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceE---EEE-------eeeeceEEEEeecC
Q psy11132          8 VPPKLSPT-NPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALS---ITH-------VDQYNSMLVIDSVS   75 (243)
Q Consensus         8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~---~~~-------~~~~~~~l~i~~~~   75 (243)
                      .||.+.+. +....+..+..++|.|.+.+..| ...|+|+++|+.+.......   ...       .-...+.|.+..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            46776654 33334566788999999986555 45899999998875421100   000       00113567776665


Q ss_pred             CCCCe-eEEEEEEeCCC
Q psy11132         76 ARHSG-NYSCTVRNMVA   91 (243)
Q Consensus        76 ~~d~G-~Y~C~~~~~~~   91 (243)
                      ..+.| .|+|.+.+...
T Consensus        83 W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HTCTTCEEEEEEEECCB
T ss_pred             hCCCCCEEEEEEEECCC
Confidence            56656 79999987543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=5.2e-06  Score=49.82  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=44.5

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEE---eecc---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVS---DLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~---~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ++.++|.|.+.+.+| ...++|.++|..+.........   ..++   ..+.|.|..-.......|+|.+.+....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            567899999976666 4699999999887654211111   1111   1245666554444566899999986543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.01  E-value=4.7e-06  Score=49.55  Aligned_cols=68  Identities=21%  Similarity=0.308  Sum_probs=43.3

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee-EEeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      .++.+.|.|.+.+.+| ...++|.++|.......... ....++.   .+.|.+..-..+....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4778999999976566 57999999998654321111 1111211   2456665444445668999999865

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.4e-05  Score=41.52  Aligned_cols=58  Identities=24%  Similarity=0.422  Sum_probs=40.5

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  184 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  184 (243)
                      .|..+.|.|....... ...-.|.|+|+.+.+....      .....+.+..  .+++|+|.|..-.
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~------~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP------GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC------CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC------CCceEEEEec--CCCCceEEEEEcC
Confidence            5788899999864333 3467999999999865322      1124456653  6789999999653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.01  E-value=2.9e-05  Score=46.78  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             CCCCCCCcEEEEEEeecC----CCCCEEEEEeC--CEe-----------cC-CCCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHG----DPPLTIRWLKD--GKP-----------LS-PRFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~--~~~-----------~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|++++|.|.....    ....-+.||+.  |..           .. ...... .........|.|.+++.+|++
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs-~~~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFT-GSGSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEE-EEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEE-eeCCCCEEEEEECccccCcCE
Confidence            446789999999986321    12345889863  211           01 111111 122334568999999999999


Q ss_pred             eEEEEEEc
Q psy11132        177 EYTCVASN  184 (243)
Q Consensus       177 ~y~C~~~n  184 (243)
                      .|.|...+
T Consensus        90 vYYC~~~~   97 (112)
T d1ncwl1          90 VYYCWQGT   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcCC
Confidence            99996543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=5.9e-05  Score=41.58  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEe-CCE---ecCCCCC-eeEEee--ccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLK-DGK---PLSPRFP-VNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~---~~~~~~~-~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..+..|+.+.|.|.+.--.-.|.++|-+ +|.   .+..... +.....  ...-..|.+..+..+|.|.|+|.|.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            4567899999999996444578999986 332   3332222 222222  22246788999999999999999997776


Q ss_pred             ce-eeeEEEEE
Q psy11132        188 QA-RYSSKLQV  197 (243)
Q Consensus       188 ~~-~~~~~l~v  197 (243)
                      -. +.++++.|
T Consensus        93 vieSHSvti~V  103 (104)
T d1xaua_          93 VINSHSVTIHV  103 (104)
T ss_dssp             EEECCCEEEEE
T ss_pred             heecceEEEEe
Confidence            54 34555544

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=5.2e-06  Score=49.31  Aligned_cols=71  Identities=23%  Similarity=0.295  Sum_probs=39.8

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccc--eeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      ..++.+.|.|.+.+.+| ...++|.+++..............+.+  .+.|.|..-... .+.|+|.+.+..+..
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCE
Confidence            35788999999976666 569999877643221111111111111  245666554443 568999999875543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.6e-05  Score=48.59  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=43.9

Q ss_pred             CCCCCCcEEEEEEeecCCCC--CEEEEEeCCE--ecC-------------CC-CCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        116 GLPEGARTRVICGVTHGDPP--LTIRWLKDGK--PLS-------------PR-FPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~--~~~-------------~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      .+.+|+.++|.|....+...  ..+.|+|...  ..+             .. ..............|.|.+++.+|+|.
T Consensus        10 ~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   89 (118)
T d1i8lc_          10 LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGL   89 (118)
T ss_dssp             ECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEE
T ss_pred             EEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEE
Confidence            45689999999998433322  2588997321  110             00 001111122335779999999999999


Q ss_pred             EEEEEEcc
Q psy11132        178 YTCVASNT  185 (243)
Q Consensus       178 y~C~~~n~  185 (243)
                      |.|.+...
T Consensus        90 YyCa~~~~   97 (118)
T d1i8lc_          90 YICKVELM   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeEecc
Confidence            99988653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.7e-05  Score=45.99  Aligned_cols=69  Identities=7%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             ccccCCeEEEEEEeeCCC-CCc-eeEEEECC-ee---e------------cCCCceEEEEe-eeeceEEEEeecCCCCCe
Q psy11132         20 TLNVGERASLICSITKGD-IPL-TIKWLKDG-RY---L------------DNSAALSITHV-DQYNSMLVIDSVSARHSG   80 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~-~~~-~v~W~~~~-~~---~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G   80 (243)
                      .+.+|+.++|.|..+... ... .+.|++.. ..   +            ....++..... ......|+|.+++.+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            456799999999985322 222 33455421 11   1            01122333222 223458999999999999


Q ss_pred             eEEEEEEe
Q psy11132         81 NYSCTVRN   88 (243)
Q Consensus        81 ~Y~C~~~~   88 (243)
                      .|.|.+..
T Consensus        91 vYyCa~~~   98 (118)
T d1yjdc1          91 IYFCKIEV   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=1.9e-05  Score=47.83  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEe--CCEecC---------------CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLK--DGKPLS---------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      .+.+|++++|.|....+  ...+.||+  .+....               ................|.|.+++.+|+|.|
T Consensus        10 ~~~~G~svtl~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (113)
T d2ntsp1          10 IKTRGQQVTLSCSPISG--HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALY   87 (113)
T ss_dssp             EEETTCCEEEEEECSTT--CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEECCC--CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceee
Confidence            45689999999986433  35789997  222110               111122222233356899999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+...
T Consensus        88 yCA~~~~   94 (113)
T d2ntsp1          88 LCASSLA   94 (113)
T ss_dssp             EEEEESS
T ss_pred             eeeeeCC
Confidence            9988754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.2e-05  Score=48.39  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        162 SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       162 ~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ...|.|.+++.+|+|.|.|.+....
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          68 SWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             eEEEEECCCChhHCEEEEEEEEecC
Confidence            4679999999999999999997543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.95  E-value=1.1e-05  Score=48.43  Aligned_cols=69  Identities=14%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------------CCCCeeEEeeccceeEEEEeecCCCCCeeEEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC  180 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  180 (243)
                      ..+.+|++++|.|... ......+.||+.  |..+.            ...+... ..+.....|.|.+++.+|+|.|.|
T Consensus         9 ~~~~~G~svtl~C~~~-~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~-~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           9 ASVTVGETVKITCSGD-QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSG-STSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             EEEETTSCCCEEEEET-TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEE-EEETTEEEEEETTCCGGGCSEEEE
T ss_pred             eEECCCCCEEEEEECC-CCCCccEEEEecccccceeeeccccccccccccceeee-cCCCCEeeeeEcCccccCCceEEE
Confidence            3456899999999873 333446889872  21100            0111222 223345789999999999999999


Q ss_pred             EEEcc
Q psy11132        181 VASNT  185 (243)
Q Consensus       181 ~~~n~  185 (243)
                      .+...
T Consensus        87 A~~~~   91 (108)
T d1nfde1          87 LSSYG   91 (108)
T ss_dssp             EEEET
T ss_pred             EeecC
Confidence            87643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=2.2e-05  Score=47.58  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC---------------CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS---------------PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|...  .....+.||+...  .+.               ................|.|.++..+|+|.
T Consensus         9 ~~~~~G~svtl~C~~s--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~   86 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQN--LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   86 (114)
T ss_dssp             EEEETTCCEEECCEEC--SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             EEEcCCCCEEEEEEEe--cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence            3457899999999973  3445899997221  100               01111111122334679999999999999


Q ss_pred             EEEEEEcc
Q psy11132        178 YTCVASNT  185 (243)
Q Consensus       178 y~C~~~n~  185 (243)
                      |.|.+...
T Consensus        87 YyCa~~~~   94 (114)
T d1ogae1          87 YLCASSSR   94 (114)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccC
Confidence            99987654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=7.8e-06  Score=48.45  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=43.7

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee-EEeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+.|.|.+.+.+| ...++|.++|..+....... ....++.   .+.|.+..-.......|+|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3567899999976566 67999999998765422111 1112221   3456665444455678999999864

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=5.3e-06  Score=49.29  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=38.7

Q ss_pred             ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEee--eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVD--QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ..++.++|.|.+.+..|. ..|+|.+++..............+  ...+.|.|..-.. +.+.|+|.+.+....
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASS   90 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCC
Confidence            357889999999865554 599998776432110100111111  1135566665544 357899999986544

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=9.1e-06  Score=48.71  Aligned_cols=68  Identities=21%  Similarity=0.352  Sum_probs=44.8

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe---ecc---ceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD---LDS---FSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~---~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ++.+.|.|.+.+.+| ...++|.++|.............   .++   ..+.|.|..-.......|+|.+.+...
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            568899999976666 46999999998776543222111   111   134566665544555689999998654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.1e-05  Score=44.33  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             CCcccccCCeEEEEEEeeCCCCCceeEEE-ECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132         17 PERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM   89 (243)
Q Consensus        17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~-~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   89 (243)
                      +.+.+.+|+++.+.|.+  ..|..++... .++..+.. +..+....    ..-++|.+.+..+.|.|.|.+...
T Consensus        13 ~~V~v~eg~~~vIPC~v--T~P~~~VtL~~~~~~~~~p~g~~v~~Dp----k~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRV--TSPNITVTLKKFPLDTLIPDGKRIIWDS----RKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEEECTTSCEEECCCB--SCTTSCCEEEETTTEEECCCSSSEEEET----TTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEEeCCCCEEEEccC--CCCCceeEEEeccCCccCCCCCEEEECC----CCCEEEeCCCcccCeEEEEEEEEC
Confidence            34678999999999998  4565565444 46665543 33333222    345889999999999999999754

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.7e-05  Score=47.29  Aligned_cols=74  Identities=12%  Similarity=0.072  Sum_probs=42.1

Q ss_pred             cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEee--eeceEEEEeecCCC--CCeeEEEEEEeCCCcc
Q psy11132         21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVD--QYNSMLVIDSVSAR--HSGNYSCTVRNMVAED   93 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~--~~~~~l~i~~~~~~--d~G~Y~C~~~~~~~~~   93 (243)
                      ....+.++|.|.+.+..|. ..|+|.+++.........  .....+  ...+.|.|......  ....|+|.+.+..+..
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            4456789999999876664 699999998765432111  111111  11245555443332  1247999999876544


Q ss_pred             e
Q psy11132         94 T   94 (243)
Q Consensus        94 ~   94 (243)
                      .
T Consensus        98 ~   98 (105)
T d1dn0b2          98 E   98 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.2e-06  Score=48.72  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=43.9

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee-EEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      .++.+.|.|.+.+.+| ...++|+++|.......... ....++.   .+.|.+..-.......|+|.+.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            3678899999976566 56999999998765422111 1111221   24566655444445589999998653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.89  E-value=1.6e-05  Score=47.92  Aligned_cols=70  Identities=19%  Similarity=0.231  Sum_probs=44.4

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------CC------CCeeEE-eeccceeEEEEeecCCCCCeeEE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------PR------FPVNVS-DLDSFSSLLSINSVSAAHSGEYT  179 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~~------~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~  179 (243)
                      ..+.+|++++|.|... ......+.||+.  |..+.      ..      ...... ........|.|.++..+|+|.|.
T Consensus        10 ~~~~~G~~vtl~C~~~-~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   88 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYS-ASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY   88 (110)
T ss_dssp             EEEETTEEEEECEEEE-CSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred             EEECCCCCEEEEEEec-CCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence            3467899999999874 444457999973  21110      00      011111 11223467999999999999999


Q ss_pred             EEEEcc
Q psy11132        180 CVASNT  185 (243)
Q Consensus       180 C~~~n~  185 (243)
                      |.+...
T Consensus        89 CA~~~~   94 (110)
T d1ac6a_          89 CALSGG   94 (110)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            988653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=4.9e-05  Score=45.81  Aligned_cols=68  Identities=18%  Similarity=0.382  Sum_probs=44.7

Q ss_pred             ccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCCC
Q psy11132         20 TLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      .++.|++++|.|.+++.. ....+.|+|.  |+.+      .           -..|+.+.... .....|+|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            577899999999987432 2346899973  3221      1           01244443322 223579999999999


Q ss_pred             CeeEEEEEE
Q psy11132         79 SGNYSCTVR   87 (243)
Q Consensus        79 ~G~Y~C~~~   87 (243)
                      ++.|.|...
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.2e-05  Score=47.68  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee-EEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      .+.+.|.|.+.+.+| ...++|.++|.......... ....++.   .+.|.|..........|+|.|.....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            567899999976666 46999999998765322111 1111221   24466665444556689999998643

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.88  E-value=6.4e-05  Score=45.39  Aligned_cols=69  Identities=16%  Similarity=0.389  Sum_probs=44.2

Q ss_pred             cccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceeec--------------C--CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGD---IPLTIKWLKD--GRYLD--------------N--SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~~--------------~--~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..+++|++++|.|.+++..   ....+.|+|.  |+.+.              +  ..++.+.... .....|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4477899999999986322   2246889973  22210              0  1233333211 1236799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999644

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.87  E-value=5.9e-05  Score=45.53  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC---------------CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS---------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      .+.+|++++|.|...  .....+.||+.  |..+.               ................|.|.+++.+|+|.|
T Consensus        11 ~~~~G~~v~l~C~~~--~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   88 (113)
T d1j8he1          11 VKRTGEKVFLECVQD--MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMY   88 (113)
T ss_dssp             EEETTCCEEECEEES--SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEEc--CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccE
Confidence            346899999999863  23457899972  21110               011122222233356799999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+...
T Consensus        89 yCa~~~~   95 (113)
T d1j8he1          89 LCASSST   95 (113)
T ss_dssp             EEEEECT
T ss_pred             EeeEccC
Confidence            9998754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.85  E-value=2.6e-06  Score=50.92  Aligned_cols=72  Identities=15%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe-eccc---eeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD-LDSF---SSLLSINSVSAAHSGEYTCVASNTAAQARY  191 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  191 (243)
                      ++.+.|.|.+.+.+| ...+.|.++|..+.......... .++.   .+.|.+......+...|+|.+.+......+
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~k   96 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK   96 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEEE
Confidence            567889999976566 46999999999877543321111 1211   234555544445566899999997655433

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.85  E-value=2.4e-05  Score=47.74  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             cccCCeEEEEEEeeCCCC---CceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGDI---PLTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      ...++.++|.|.+.+..|   ...++|+++|..+.............    ..+.|.|..-.......|+|.+.+...
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            456889999999975444   35889999998876433222111111    124455444333445689999997654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.84  E-value=0.0001  Score=44.27  Aligned_cols=70  Identities=19%  Similarity=0.419  Sum_probs=46.2

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      .        +  ..++.+.... .....|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            4578899999999997422 2447889883  2211      1        0  2344444322 223579999999999


Q ss_pred             CeeEEEEEEe
Q psy11132         79 SGNYSCTVRN   88 (243)
Q Consensus        79 ~G~Y~C~~~~   88 (243)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999996654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.83  E-value=7.2e-05  Score=44.98  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=44.0

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec--------------CC--CCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL--------------SP--RFPVNVSDLDSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~--------------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g  176 (243)
                      ..+.+|++++|.|... + ....+.||+.  |..+              .+  ...............|.|.++..+|+|
T Consensus         9 ~~~~~G~svtl~C~~~-~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   86 (111)
T d2esve1           9 SVIEKGQTVTLRCDPI-S-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG   86 (111)
T ss_dssp             EEEETTCCEEEEEECC-T-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEEC-C-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence            3456899999999863 3 3458999972  1110              01  111222222233467999999999999


Q ss_pred             eEEEEEEcc
Q psy11132        177 EYTCVASNT  185 (243)
Q Consensus       177 ~y~C~~~n~  185 (243)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (111)
T d2esve1          87 VYFCASSQD   95 (111)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeeCC
Confidence            999987643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=2.8e-05  Score=46.98  Aligned_cols=70  Identities=19%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC---------------CCCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS---------------PRFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      .+.+|++++|.|....  ....+.||+...  .+.               ................|.|..++.+|+|.|
T Consensus         9 ~~~~G~svtL~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   86 (112)
T d2cdeb1           9 VIGTGKKITLECSQTM--GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQY   86 (112)
T ss_dssp             EEETTCCBCCEEEETT--CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEE
T ss_pred             EECCCCCEEEEEEEeC--CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccE
Confidence            4568999999998732  345799997321  100               001111111222346699999999999999


Q ss_pred             EEEEEccCc
Q psy11132        179 TCVASNTAA  187 (243)
Q Consensus       179 ~C~~~n~~g  187 (243)
                      .|.+....+
T Consensus        87 yCA~~~~~~   95 (112)
T d2cdeb1          87 LCASSENIG   95 (112)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEecCCC
Confidence            998876543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.79  E-value=2.8e-06  Score=52.78  Aligned_cols=70  Identities=17%  Similarity=0.308  Sum_probs=45.1

Q ss_pred             CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee---EE----eecc---ceeEEEEeecCCCCCe-eEEEEEEcc
Q psy11132        118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN---VS----DLDS---FSSLLSINSVSAAHSG-EYTCVASNT  185 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~---~~----~~~~---~~~~l~i~~~~~~d~g-~y~C~~~n~  185 (243)
                      ..++.++|.|.+.+.+| ...+.|+++|..+.......   ..    ..++   ..+.|.+......+.| .|+|.+.+.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            34678899999976666 56899999998876432111   00    0011   1356777655555655 799999986


Q ss_pred             Cc
Q psy11132        186 AA  187 (243)
Q Consensus       186 ~g  187 (243)
                      ..
T Consensus        98 ~l   99 (127)
T d1ogae2          98 GL   99 (127)
T ss_dssp             CB
T ss_pred             CC
Confidence            54

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1.9e-05  Score=48.06  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             CCCCCCCcEEEEEEeecC--C---CCCEEEEEeCCEec-------------C--CCCCeeEEe-eccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHG--D---PPLTIRWLKDGKPL-------------S--PRFPVNVSD-LDSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~--~---p~~~~~W~~~~~~~-------------~--~~~~~~~~~-~~~~~~~l~i~~~~~~  173 (243)
                      ..+.+|..+.|.|.....  .   ....+.|++.....             .  ...+..... .......|.|.+++.+
T Consensus        10 v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T d1qfoa_          10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             EEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChh
Confidence            345789999999987411  1   12356677643211             0  011122221 1223567999999999


Q ss_pred             CCeeEEEEEEccC
Q psy11132        174 HSGEYTCVASNTA  186 (243)
Q Consensus       174 d~g~y~C~~~n~~  186 (243)
                      |+|.|.|.+....
T Consensus        90 DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          90 DSGTYNFRFEISD  102 (118)
T ss_dssp             GCEEEEEEEECC-
T ss_pred             HCEEEEEEEEeCC
Confidence            9999999997654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=6.8e-05  Score=44.85  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             CCCCCCcEEEEEEeec-CCCCCEEEEEeC--CEe----cC-C--C--------CCeeEEee-ccceeEEEEeecCCCCCe
Q psy11132        116 GLPEGARTRVICGVTH-GDPPLTIRWLKD--GKP----LS-P--R--------FPVNVSDL-DSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~-~~p~~~~~W~~~--~~~----~~-~--~--------~~~~~~~~-~~~~~~l~i~~~~~~d~g  176 (243)
                      .+.+|++++|.|.... ....-.+.|++.  +..    +. .  .        .+..+... ......|+|.+++.+|+|
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa   85 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG   85 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence            4678999999999842 124557899983  221    10 0  0        01122221 233467999999999999


Q ss_pred             eEEEEEEccC
Q psy11132        177 EYTCVASNTA  186 (243)
Q Consensus       177 ~y~C~~~n~~  186 (243)
                      .|.|......
T Consensus        86 ~YyCa~~~~~   95 (110)
T d1u9ka_          86 LYRCVIYHPP   95 (110)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEeCCC
Confidence            9999986544

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.78  E-value=3.4e-05  Score=46.62  Aligned_cols=70  Identities=19%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEe--cC---------------CCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKP--LS---------------PRFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~--~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      ..+.+|++++|.|....+  ...+.||+....  +.               ...+............|.|.+++.+|+|.
T Consensus        11 ~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (113)
T d1nfdb1          11 IIKEKGGRSVLTCIPISG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   88 (113)
T ss_dssp             EEEETTCCCEEEEECCTT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEE
T ss_pred             EEEeCCCCEEEEEEeCCC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCcee
Confidence            345689999999986433  357999973211  00               01111122222334679999999999999


Q ss_pred             EEEEEEccC
Q psy11132        178 YTCVASNTA  186 (243)
Q Consensus       178 y~C~~~n~~  186 (243)
                      |.|.+....
T Consensus        89 YyCa~~~~~   97 (113)
T d1nfdb1          89 YFCASSLRW   97 (113)
T ss_dssp             ECEEEESSS
T ss_pred             EEEEeecCC
Confidence            999876543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=3.6e-05  Score=46.45  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeC--CEec--------------CC--CCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKD--GKPL--------------SP--RFPVNVSDLDSFSSLLSINSVSAAHSGE  177 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~--------------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~  177 (243)
                      .+.+|++++|.|....  ....+.||+.  +...              ..  ...............|.|.+++.+|+|.
T Consensus        10 ~~~~G~svtl~C~~~~--~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (112)
T d1kgce1          10 VAKRGQDVALRCDPIS--GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAV   87 (112)
T ss_dssp             EEETTCCEEEEEECCT--TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEECC--CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEE
Confidence            3568999999998632  3457999972  1100              00  1111122222334679999999999999


Q ss_pred             EEEEEEc
Q psy11132        178 YTCVASN  184 (243)
Q Consensus       178 y~C~~~n  184 (243)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (112)
T d1kgce1          88 YLCASSL   94 (112)
T ss_dssp             EEEEEES
T ss_pred             EEEeeeC
Confidence            9998864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.77  E-value=6.3e-05  Score=45.21  Aligned_cols=67  Identities=24%  Similarity=0.437  Sum_probs=44.5

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      .        +  ..++.+.... .....|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            3478899999999997422 2347889973  2221      1        1  2345444322 223579999999999


Q ss_pred             CeeEEEE
Q psy11132         79 SGNYSCT   85 (243)
Q Consensus        79 ~G~Y~C~   85 (243)
                      ++.|.|.
T Consensus        90 tA~YYCA   96 (120)
T d1dn0b1          90 TAVYYCA   96 (120)
T ss_dssp             CEEEEEE
T ss_pred             ccEEEEE
Confidence            9999994

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=5.4e-05  Score=45.25  Aligned_cols=68  Identities=19%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-C----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-N----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      . .          ..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            3478899999999987422 3346889873  2221      1 0          1234333322 22357999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|.-
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999953

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.75  E-value=5.7e-05  Score=45.51  Aligned_cols=68  Identities=21%  Similarity=0.269  Sum_probs=43.2

Q ss_pred             CCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC--------------C-CCCeeEEeeccceeEEEEeecCCCCCeeE
Q psy11132        116 GLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS--------------P-RFPVNVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~--------------~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      .+.+|++++|.|... . ....+.||+.  |..+.              . ...............|.|.++..+|+|.|
T Consensus        10 ~~~~G~svtl~C~~s-~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavY   87 (112)
T d2bnub1          10 VLKTGQSMTLQCAQD-M-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVY   87 (112)
T ss_dssp             EEETTCCEEEEEEES-S-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEEE-C-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEE
Confidence            356899999999874 3 3457999972  21110              0 01111111222245799999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+...
T Consensus        88 yCA~~~~   94 (112)
T d2bnub1          88 FCASSYV   94 (112)
T ss_dssp             EEEEECS
T ss_pred             EEeecCC
Confidence            9987643

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.75  E-value=0.00014  Score=43.43  Aligned_cols=70  Identities=19%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c----------CCCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D----------NSAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~----------~~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      .          -..++.+.... .....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            457789999999999742 23347889873  2211      1          02344443322 224679999999999


Q ss_pred             CeeEEEEEEe
Q psy11132         79 SGNYSCTVRN   88 (243)
Q Consensus        79 ~G~Y~C~~~~   88 (243)
                      ++.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.74  E-value=9.6e-05  Score=44.05  Aligned_cols=69  Identities=17%  Similarity=0.380  Sum_probs=45.2

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      .        +  ..++.+.... .....|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            447889999999999742 22347889873  2221      1        1  1234443322 223579999999999


Q ss_pred             CeeEEEEEE
Q psy11132         79 SGNYSCTVR   87 (243)
Q Consensus        79 ~G~Y~C~~~   87 (243)
                      ++.|.|.-.
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=9.2e-05  Score=44.11  Aligned_cols=68  Identities=21%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|+|.+++.. ....+.|+|.  |+.+      .        +  ..++.+.... .....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            4578899999999997422 2347889873  2221      0        1  2344444332 223579999999999


Q ss_pred             CeeEEEEE
Q psy11132         79 SGNYSCTV   86 (243)
Q Consensus        79 ~G~Y~C~~   86 (243)
                      ++.|.|..
T Consensus        90 tAvYYCAr   97 (117)
T d1c5db1          90 TAIYFCTR   97 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999954

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.73  E-value=0.00029  Score=42.51  Aligned_cols=69  Identities=14%  Similarity=0.363  Sum_probs=44.0

Q ss_pred             cccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceeec------C----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGD---IPLTIKWLKD--GRYLD------N----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~~------~----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..++.|++++|.|.+++..   ....+.|+|.  |+.+.      .          ..++.+.... .....|+|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            3477899999999986422   2235789872  22210      0          1234433322 2235799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=0.00021  Score=42.97  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecC------CCCCe--------eEEeeccceeEEEEeecCCCCCeeE
Q psy11132        115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLS------PRFPV--------NVSDLDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~------~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      ..+.+|++++|.|... ......+.||+.  |+.+.      .....        ...........|.|.....+|++.|
T Consensus        11 ~~~~~G~~vtL~C~~~-~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          11 RLVPRGQAVNLRCILK-NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EECCTTCCEEEEEEES-CTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEE
T ss_pred             EEECCCCCEEEEEEEe-cCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccE
Confidence            3467899999999874 444568999973  22110      00000        0111111124588888899999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.+...
T Consensus        90 ~Ca~~~~   96 (112)
T d1fo0b_          90 YCTCSAD   96 (112)
T ss_dssp             EEEEESS
T ss_pred             EEEEecC
Confidence            9997543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.72  E-value=0.0001  Score=44.89  Aligned_cols=69  Identities=17%  Similarity=0.371  Sum_probs=45.5

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC------------CCCCeeEEe-eccceeEEEEeecCCCCCeeE
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS------------PRFPVNVSD-LDSFSSLLSINSVSAAHSGEY  178 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~------------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y  178 (243)
                      .+.+|++++|.|... +..  ...+.||+.  |..+.            ...+..... .......|.|.+++.+|+|.|
T Consensus        12 ~v~~G~~vtL~C~~s-~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~Y   90 (120)
T d1hxma1          12 PVSIGVPATLRCSMK-GEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSY   90 (120)
T ss_dssp             EEETTCCEEEEEEEC-SSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEEe-ccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCcee
Confidence            456899999999984 433  457999972  21110            111222222 223457899999999999999


Q ss_pred             EEEEEcc
Q psy11132        179 TCVASNT  185 (243)
Q Consensus       179 ~C~~~n~  185 (243)
                      .|.....
T Consensus        91 yCA~~~~   97 (120)
T d1hxma1          91 YCACDTL   97 (120)
T ss_dssp             EEEEECC
T ss_pred             ecCcccC
Confidence            9987654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.71  E-value=0.00011  Score=43.94  Aligned_cols=70  Identities=17%  Similarity=0.415  Sum_probs=45.6

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|+|.+++.. ....+.|+|.  |+.+      .           -..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            4578899999999997321 2346889872  2211      1           12334443322 22357999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |++.|.|....
T Consensus        90 DtAvYYCA~~~  100 (117)
T d1iqdb1          90 DTAVYYCAVPD  100 (117)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeEcC
Confidence            99999997643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.71  E-value=9.8e-05  Score=45.00  Aligned_cols=68  Identities=24%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             ccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCC
Q psy11132         20 TLNVGERASLICSITKGD---IPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      .+++|++++|+|.+++..   ....+.|+|.  |+.+      .        +  ..++.+...+ .....|.|.+++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            477899999999987422   2235679862  2211      0        1  2244444332 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999753

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.9e-05  Score=44.37  Aligned_cols=71  Identities=13%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             cccCCeEEEEEEeeCCCCC---ceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +..++.++|.|.+.+..|.   ..+.|++++...............    ...+.|.+..-.......|+|.+.+...
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            4557888999999765554   367788888765443221111111    1134455443333445699999997654

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.7e-05  Score=47.12  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=40.2

Q ss_pred             cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .++.++|.|.+.+..|. ..|+|.+++..............+   ...+.|.|..-... ...|+|.+.+....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~   91 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSN   91 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCC
Confidence            46789999999865554 599998776432110000001111   11356666654442 45799999986554

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.70  E-value=0.00011  Score=43.00  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             CCcEEEEEEeecCCC-CCEEEEEeCCEecCC----CCC-e-eEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSP----RFP-V-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       120 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~----~~~-~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ...++|.|.+.+.+| ...+.|.++|..+..    ... . .....++.......-.+..++...|+|.+.....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            357899999976667 568999998876532    110 1 1111122222222223455566789999987543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.7e-05  Score=42.28  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC-CCCeeEEEEEEe
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNYSCTVRN   88 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~   88 (243)
                      ..|.+|+|+|.-  . ....+.|.+++..+..........  .....|.+.+.+. +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~--~-~~~~i~W~~n~~~~~~~~~~~~~~--~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ--Y-PGSEILWQHNDKNIGGDEDDKNIG--SDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS--C-TTSCEEEEETTEEESSSCSCTTEE--EETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC--C-CCCceeeeeccccccCCCcccccc--cccceEEecccCccccCceEEEEcCC
Confidence            359999999974  2 334799999998876532211000  0134677877766 789999999853

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.8e-05  Score=46.33  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             cccCCeEEEEEEeeCCCCC---ceeEEEECCeeecCCCceEEEEee-e---eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         21 LNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVD-Q---YNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      +..++.++|.|.+.+..|.   ..+.|.+++..+............ .   ..+.|.|..-.......|+|.+.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            5568899999999754453   578899999877543221111111 1   1234555444334455999999976543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=0.00014  Score=43.32  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=45.5

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c---------C--CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D---------N--SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~---------~--~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      .         +  ..++.+...+ .....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            457889999999999742 23457889872  2211      1         0  2344444322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.68  E-value=9.1e-05  Score=44.22  Aligned_cols=67  Identities=15%  Similarity=0.405  Sum_probs=44.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Cee------ecC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRY------LDN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.      +..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            4578899999999997422 2346889873  221      111           2344444322 22357999999999


Q ss_pred             CCeeEEEE
Q psy11132         78 HSGNYSCT   85 (243)
Q Consensus        78 d~G~Y~C~   85 (243)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (118)
T d1nlbh1          90 DTATYFCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999994

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=0.00013  Score=43.61  Aligned_cols=70  Identities=17%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++. .....+.|+|.  |+.+      ..           ..|+.+.... .....|.|.+++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            4557889999999999632 23357899873  2211      11           1234433322 2235799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1um5h1          88 EDSAVYYCARS   98 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.67  E-value=0.00011  Score=43.76  Aligned_cols=69  Identities=17%  Similarity=0.372  Sum_probs=45.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Cee------ec-----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRY------LD-----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~------~~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.      +.           -..++.+.... .....|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4578899999999997322 2347889873  221      11           02334443322 22357899999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|.-.
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999643

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.67  E-value=7.4e-05  Score=44.96  Aligned_cols=69  Identities=16%  Similarity=0.305  Sum_probs=44.9

Q ss_pred             cccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceee------cC----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGD---IPLTIKWLKD--GRYL------DN----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~------~~----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..++.|+++.|.|.+++..   ....+.|+|.  |+.+      ..          ..|+.+.... .....|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            4578899999999987432   2346789873  2222      11          1244443322 2235799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|.-.
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=8.5e-05  Score=41.79  Aligned_cols=52  Identities=31%  Similarity=0.608  Sum_probs=38.8

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC-CCCeeEEEEE
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNYSCTV   86 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~   86 (243)
                      ..|.+|+|+|... +.  -.|.|.+++..+....          ...|.+.+.+. +++|.|.|..
T Consensus        12 ISGTtV~LTCP~~-~~--~~I~Wkkn~~~i~g~~----------~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLD-SD--ENLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSC-CC--TTCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCC-CC--CceEEeeccccCCCCC----------CcEEEEccccccccCcceEEec
Confidence            4599999999964 32  3699999998887643          33566776544 8999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.66  E-value=6.4e-05  Score=44.16  Aligned_cols=67  Identities=16%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             ccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c--------C--CCceEEEEee-eeceEEEEeecCCCCC
Q psy11132         20 TLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D--------N--SAALSITHVD-QYNSMLVIDSVSARHS   79 (243)
Q Consensus        20 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~--------~--~~~~~~~~~~-~~~~~l~i~~~~~~d~   79 (243)
                      .++.|+++.|.|.+++. .....+.|+|.  |+.+      .        +  ..++.+.... .....|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            46789999999998632 12346789873  2211      1        1  1244444322 2235799999999999


Q ss_pred             eeEEEEE
Q psy11132         80 GNYSCTV   86 (243)
Q Consensus        80 G~Y~C~~   86 (243)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=46.72  Aligned_cols=70  Identities=20%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQA  189 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~  189 (243)
                      .+..+.|.|.+.+.+| ...++|.+++..............++.   .+.|.+..-.. ....|+|.+.+..+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            4678999999976666 569999877654221100111111221   24566654433 2457999999976544

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00017  Score=43.36  Aligned_cols=69  Identities=14%  Similarity=0.325  Sum_probs=44.9

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|++++|+|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            4578899999999987322 2346889873  3221      10           1244443322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999754

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=0.00011  Score=43.34  Aligned_cols=70  Identities=14%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCCCcEEEEEEeecCCCC--CEEEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        118 PEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..++.+.|.|.+.+.+|+  ..+.|.+++..+...........++   ..+.|.|..........|+|.|.+...
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            357889999999654554  4678888776543211111111111   135577766665666689999988644

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.65  E-value=0.00011  Score=44.72  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             CCCCcEEEEEEeecCCC---CCEEEEEeCCEecCCCCCeeE-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        118 PEGARTRVICGVTHGDP---PLTIRWLKDGKPLSPRFPVNV-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..++.+.|.|.+.+.+|   ...++|+++|..+........ ...++.   .+.|.|..-.......|+|.|.+..-
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            45788899999965445   468999999988764332222 222222   23455443333445689999998653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.65  E-value=0.00017  Score=43.65  Aligned_cols=69  Identities=20%  Similarity=0.441  Sum_probs=45.7

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Cee------ecC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRY------LDN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.      +..           ..++.+...+ .....|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            357789999999999742 23447889873  221      111           2344443322 22367999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.65  E-value=0.0002  Score=42.77  Aligned_cols=70  Identities=20%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c---------C--CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D---------N--SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~---------~--~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++.. ....+.|+|.  |+.+      .         +  ..++.+.... .....|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            34578899999999997422 2347888872  2211      1         0  1234443322 2235789999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|.-.
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.65  E-value=0.00011  Score=43.62  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=44.3

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            4578899999999997321 2346889873  2211      11           1244443322 22356999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|..
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.64  E-value=9.7e-05  Score=43.18  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CCeEEEEEEeeCCCCC-ceeEEEECCeeecC----CC-ceEEEEe-eeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         24 GERASLICSITKGDIP-LTIKWLKDGRYLDN----SA-ALSITHV-DQYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        24 g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~----~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      ...++|.|.+.+..|. ..|+|.+||..+..    .. ....... +..........+...+...|+|.+.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            4578999999865554 59999999865432    11 0011111 111112222234455667899999865443

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.64  E-value=0.00018  Score=42.97  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=44.5

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEE--CCeee------c---------C--CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLK--DGRYL------D---------N--SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~------~---------~--~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...+++|+++.|.|.+++.. ....+.|+|  .|+.+      .         +  ..++.+.... .....|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            44578899999999997422 234688887  23222      1         0  1233333322 2235799999999


Q ss_pred             CCCeeEEEEE
Q psy11132         77 RHSGNYSCTV   86 (243)
Q Consensus        77 ~d~G~Y~C~~   86 (243)
                      +|++.|.|.-
T Consensus        89 eDtAvYYCAr   98 (117)
T d1mfah1          89 EDSAVYYCTR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.63  E-value=0.00026  Score=43.07  Aligned_cols=69  Identities=14%  Similarity=0.363  Sum_probs=45.2

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|+|.+++.. ....+.|+|.  |+.+      ..           ..|+.+.... .....|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            3478899999999997422 2346889873  2211      11           2344443322 22367999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|.-.
T Consensus        90 DTAvYYCAr~   99 (135)
T d1ieha_          90 DTAVYYCAKY   99 (135)
T ss_dssp             SCEEEEEEEB
T ss_pred             cceeeEEEEe
Confidence            9999999654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.63  E-value=0.00017  Score=44.05  Aligned_cols=68  Identities=19%  Similarity=0.391  Sum_probs=44.0

Q ss_pred             CCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec--------------CC---CCCeeEEee-ccceeEEEEeecCCCC
Q psy11132        117 LPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL--------------SP---RFPVNVSDL-DSFSSLLSINSVSAAH  174 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~--------------~~---~~~~~~~~~-~~~~~~l~i~~~~~~d  174 (243)
                      ..+|++++|.|.+. |..  ...+.||+.  ++.+              ..   ..+...... ......|.|.+++.+|
T Consensus        13 ~~~g~t~~LsC~~s-g~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~D   91 (123)
T d1hxmb1          13 KTLSKTARLECVVS-GITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQD   91 (123)
T ss_dssp             EETTCCEEEEEEEE-SSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eCCCCCEEEEEEEc-CCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccccc
Confidence            45799999999984 532  456899972  1110              00   112222222 2335679999999999


Q ss_pred             CeeEEEEEEcc
Q psy11132        175 SGEYTCVASNT  185 (243)
Q Consensus       175 ~g~y~C~~~n~  185 (243)
                      ++.|.|.+...
T Consensus        92 sa~YyCA~~~~  102 (123)
T d1hxmb1          92 IATYYCALWEA  102 (123)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CcEEEEeeeCC
Confidence            99999987653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.63  E-value=0.00022  Score=42.65  Aligned_cols=69  Identities=17%  Similarity=0.349  Sum_probs=45.5

Q ss_pred             cccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGDI--PLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..++.|+++.|.|.++ +..  ...+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.
T Consensus        10 ~~vkpg~sl~LsC~~S-G~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAAS-GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEC-CccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            4578899999999997 433  236789873  2211      11           2234443322 2235799999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d2fbjh1          89 EDTALYYCARLH  100 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEeeEec
Confidence            999999997654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=42.77  Aligned_cols=68  Identities=18%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-------------CCceEEEEee-eeceEEEEeecC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-------------SAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-------------~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ..+++|+++.|+|.+++.. ....+.|+|.  |+.+      ..             ..++.+.... .....|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            4578899999999997422 2347889872  2211      10             1244443322 223579999999


Q ss_pred             CCCCeeEEEEE
Q psy11132         76 ARHSGNYSCTV   86 (243)
Q Consensus        76 ~~d~G~Y~C~~   86 (243)
                      .+|++.|.|.-
T Consensus        90 ~eDTAvYYCAr  100 (109)
T d2ck0h1          90 TEDTGIYYCVR  100 (109)
T ss_dssp             GGGCEEEEEEE
T ss_pred             HhHCEEEEEEE
Confidence            99999999964

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.62  E-value=0.00011  Score=44.70  Aligned_cols=68  Identities=21%  Similarity=0.377  Sum_probs=42.8

Q ss_pred             CCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe---c---CC----------CCCeeEEe-eccceeEEEEeecCCCCC
Q psy11132        117 LPEGARTRVICGVTHGDP--PLTIRWLKD--GKP---L---SP----------RFPVNVSD-LDSFSSLLSINSVSAAHS  175 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~---~---~~----------~~~~~~~~-~~~~~~~l~i~~~~~~d~  175 (243)
                      ..+|++++|.|.+. +..  ...+.||+.  |..   +   ..          ..+..... .......|.|.+++.+|+
T Consensus        13 ~~~G~svtL~C~~~-~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Ds   91 (120)
T d1ypzf1          13 RPRDETAQISCKVF-IESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDE   91 (120)
T ss_dssp             EETTSCEEEEEEEC-CGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEEe-cccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            45799999999874 332  346899972  111   1   00          01111211 123356799999999999


Q ss_pred             eeEEEEEEcc
Q psy11132        176 GEYTCVASNT  185 (243)
Q Consensus       176 g~y~C~~~n~  185 (243)
                      +.|.|.+...
T Consensus        92 a~YyCA~~~~  101 (120)
T d1ypzf1          92 AIYYCSYGEG  101 (120)
T ss_dssp             SEEEEEECCT
T ss_pred             eeEEEEEcCC
Confidence            9999987543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=5e-05  Score=44.99  Aligned_cols=71  Identities=14%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             cccCCeEEEEEEeeCCCCC---ceeEEEECCeeecCCCceEEEEe-ee---eceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132         21 LNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHV-DQ---YNSMLVIDSVSARHSGNYSCTVRNMVA   91 (243)
Q Consensus        21 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~   91 (243)
                      +..+..++|.|.+.+..|.   ..++|.++|..+........... +.   ..+.|.|..-.......|+|.+.+...
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            3356778999999754443   58899999987654321111111 11   123454443333344579999997653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00022  Score=42.87  Aligned_cols=69  Identities=14%  Similarity=0.377  Sum_probs=45.8

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ...++.|+++.|+|.++ +..  ...+.|+|.  |+.+      ..           ..|+.+.... .....|.|.+++
T Consensus        10 ~~~vkpg~sl~LsC~~S-G~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKAS-GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEC-SSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEc-CCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            45688999999999996 433  346889873  2211      10           2344443322 223479999999


Q ss_pred             CCCCeeEEEEEE
Q psy11132         76 ARHSGNYSCTVR   87 (243)
Q Consensus        76 ~~d~G~Y~C~~~   87 (243)
                      .+|++.|.|...
T Consensus        89 ~eDtA~YYCAr~  100 (122)
T d1vgeh1          89 PEDTAVYYCARD  100 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999665

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=0.00018  Score=42.95  Aligned_cols=68  Identities=15%  Similarity=0.353  Sum_probs=44.5

Q ss_pred             CcccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecC
Q psy11132         18 ERTLNVGERASLICSITKGDI--PLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ...++.|+++.|.|.++ |..  ...+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++
T Consensus         9 ~~~~kpg~sl~lsC~~S-G~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           9 PELVRPGVSVKISCKGS-GYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEc-CCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            34578899999999997 433  247889872  2211      10           1244443322 223579999999


Q ss_pred             CCCCeeEEEEE
Q psy11132         76 ARHSGNYSCTV   86 (243)
Q Consensus        76 ~~d~G~Y~C~~   86 (243)
                      .+|++.|.|.-
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999943

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=0.00034  Score=40.86  Aligned_cols=66  Identities=21%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             cCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCCCCee
Q psy11132         23 VGERASLICSITKGD-IPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSARHSGN   81 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~   81 (243)
                      .|+++.|.|.+++.. ....+.|+|.  |+.+      .           -..++.+.... .....|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            489999999997422 3347889973  2221      1           12334433322 223579999999999999


Q ss_pred             EEEEEEe
Q psy11132         82 YSCTVRN   88 (243)
Q Consensus        82 Y~C~~~~   88 (243)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.59  E-value=0.00015  Score=43.65  Aligned_cols=70  Identities=17%  Similarity=0.390  Sum_probs=45.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            3477899999999997321 2346789872  2211      10           2234443322 22357999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999996553

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00028  Score=42.52  Aligned_cols=70  Identities=19%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++. .....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            3457889999999998632 22347889873  2221      10           1234333322 2235699999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            99999999754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00018  Score=43.70  Aligned_cols=70  Identities=13%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|+|.+++. .....+.|+|.  |+.+      ..           ..++.+...+ .....|.+.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~   87 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS   87 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence            3457889999999999632 23347889872  2221      10           2244444322 2235789999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|.-.
T Consensus        88 eDtAvYyCAr~   98 (130)
T d1rhhb1          88 DDTAVYYCARD   98 (130)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCcEEEEEEee
Confidence            99999999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.58  E-value=0.00018  Score=43.03  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=44.3

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            4578899999999997422 2346889873  2211      11           1244443322 22357999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999953

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=5.8e-05  Score=44.70  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             CCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCCeeE-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132        118 PEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNV-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTA  186 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  186 (243)
                      ..+.+.+|.|.+.+..|.   ..++|+++|..+........ ...++.   .+.|.|..-.......|+|.+.+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            356778999999654553   58999999887664432111 111221   2344444333334557999999865

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.57  E-value=0.00026  Score=42.25  Aligned_cols=69  Identities=13%  Similarity=0.230  Sum_probs=45.4

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC----------CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN----------SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~----------~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      ..          ..++.+.... .....|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            347789999999999742 23457889873  2221      11          1234443322 223579999999999


Q ss_pred             CeeEEEEEE
Q psy11132         79 SGNYSCTVR   87 (243)
Q Consensus        79 ~G~Y~C~~~   87 (243)
                      ++.|.|.-.
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.57  E-value=0.00027  Score=42.31  Aligned_cols=69  Identities=23%  Similarity=0.441  Sum_probs=44.9

Q ss_pred             cccccCCeEEEEEEeeCCCC--CceeEEEE--CCeee------c----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGDI--PLTIKWLK--DGRYL------D----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~--~~~v~W~~--~~~~~------~----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|+|.+++..-  ...+.|+|  .|+.+      .          -..++.+.... .....|.+.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            45788999999999974222  24578987  23322      1          12344443322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999644

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00017  Score=43.73  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++.. ....+.|+|.  |+.+      .           -..++.+.... .....|.|.+++.
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            34578899999999997422 2346888872  2211      1           11244443322 2235799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|.-.
T Consensus        89 eDtAvYYCAR~   99 (125)
T d1rihh1          89 EDSAVYYCARE   99 (125)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeee
Confidence            99999999754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00027  Score=42.73  Aligned_cols=70  Identities=19%  Similarity=0.378  Sum_probs=45.6

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|+|.+++. .....+.|+|.  |+-+      .           -..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            347789999999999742 23346889872  2221      1           02344443322 22357999999999


Q ss_pred             CCeeEEEEEEe
Q psy11132         78 HSGNYSCTVRN   88 (243)
Q Consensus        78 d~G~Y~C~~~~   88 (243)
                      |++.|.|.-..
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999997543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.56  E-value=0.00027  Score=42.97  Aligned_cols=70  Identities=16%  Similarity=0.419  Sum_probs=45.4

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Cee---e---c----------------CCCceEEEEee-eeceEEEEe
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRY---L---D----------------NSAALSITHVD-QYNSMLVID   72 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~---~----------------~~~~~~~~~~~-~~~~~l~i~   72 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.   +   .                -..++.+.... .....|+|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            3477899999999997422 2347889973  211   1   0                01234433322 224579999


Q ss_pred             ecCCCCCeeEEEEEEe
Q psy11132         73 SVSARHSGNYSCTVRN   88 (243)
Q Consensus        73 ~~~~~d~G~Y~C~~~~   88 (243)
                      +++.+|++.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999997653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.55  E-value=0.00017  Score=43.39  Aligned_cols=69  Identities=16%  Similarity=0.368  Sum_probs=44.5

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            3468899999999997321 2346789873  2221      11           1244443322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.55  E-value=0.00056  Score=40.89  Aligned_cols=69  Identities=20%  Similarity=0.357  Sum_probs=45.0

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEE--CCeeec------C-------------CCceEEEEee-eeceEEEEeecC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLK--DGRYLD------N-------------SAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~--~~~~~~------~-------------~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ..++.|+++.|.|.+++. .....+.|+|  .|+.+.      .             ..|+.+.... .....|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            347789999999999742 2345788987  232211      0             1233443322 223579999999


Q ss_pred             CCCCeeEEEEEE
Q psy11132         76 ARHSGNYSCTVR   87 (243)
Q Consensus        76 ~~d~G~Y~C~~~   87 (243)
                      .+|++.|.|...
T Consensus        90 ~eDtAvYYCA~~  101 (120)
T d1dlfh_          90 AEDTGIYYCTGI  101 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEeeEe
Confidence            999999999654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.55  E-value=0.00017  Score=43.25  Aligned_cols=69  Identities=17%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-C----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-N----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      . .          ..++.+.... .....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            4578899999999997422 2347889873  2211      1 0          2244444322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.54  E-value=0.00021  Score=42.40  Aligned_cols=69  Identities=19%  Similarity=0.334  Sum_probs=45.0

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-C----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-N----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++.. ....+.|+|.  |+.+      . .          ..++.+.... .....|.+.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            45688899999999997322 2346789872  2211      1 1          1244443322 2235789999999


Q ss_pred             CCCeeEEEEE
Q psy11132         77 RHSGNYSCTV   86 (243)
Q Consensus        77 ~d~G~Y~C~~   86 (243)
                      +|++.|.|.-
T Consensus        89 eDtAvYYCAr   98 (116)
T d1mjuh1          89 DDSAVYYCAN   98 (116)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEcc
Confidence            9999999964

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=5.3e-05  Score=44.89  Aligned_cols=70  Identities=11%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             CCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCCeeEEeeccc----eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        118 PEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDLDSF----SSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      ..++..+|.|.+.+.+|.   ..+.|++++.................    .+.|.+..-.......|+|.+.+...
T Consensus        14 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          14 FIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             HTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             hhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            346778999999755664   47788888876654432222222211    23444443333345689999998643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.53  E-value=0.00021  Score=42.86  Aligned_cols=68  Identities=18%  Similarity=0.406  Sum_probs=44.1

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            457889999999999742 23457889873  2211      10           1233333221 22357999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (121)
T d2p49b1          90 DTATYYCAA   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEeeec
Confidence            999999965

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00039  Score=42.58  Aligned_cols=70  Identities=23%  Similarity=0.454  Sum_probs=45.0

Q ss_pred             cccccCCeEEEEEEeeCCC---CCceeEEEEC--Ceeec----------------CCCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGD---IPLTIKWLKD--GRYLD----------------NSAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~--~~~~~----------------~~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..+++|+++.|.|.+++..   ....+.|+|.  |+.+.                -..++.+...+ .....|+|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            3477899999999986422   2235889973  22110                02344443322 2235699999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=9.4e-05  Score=41.07  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEc
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASN  184 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n  184 (243)
                      .|.++.|+|.-   .+...+.|.+++..+...........  ....|.+.+.+. +++|.|.|.+..
T Consensus         9 SGTtV~LTCP~---~~~~~i~W~~n~~~~~~~~~~~~~~~--~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           9 SGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             ETTEEEEECSS---CTTSCEEEEETTEEESSSCSCTTEEE--ETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             eCCEEEEECCC---CCCCceeeeeccccccCCCccccccc--ccceEEecccCccccCceEEEEcCC
Confidence            58999999953   34567999999988875432111110  023467777665 689999999854

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.51  E-value=0.00032  Score=42.46  Aligned_cols=69  Identities=17%  Similarity=0.427  Sum_probs=44.6

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|+|.+++. .....+.|+|.  |+.+      ..           ..++.+...+ .....|.|.+++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            457889999999998632 22347889873  2211      11           1244443322 22356999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        89 DTAvYYCAr~   98 (126)
T d1rjca1          89 DTAMYYCAAD   98 (126)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCceeEEEee
Confidence            9999999654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=0.00034  Score=42.24  Aligned_cols=69  Identities=19%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c-C----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D-N----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++. .....+.|+|.  |+.+      . .          ..++.+.... .....|.|.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            3457889999999999742 23347889872  2211      1 0          2344443322 2346899999999


Q ss_pred             CCCeeEEEEE
Q psy11132         77 RHSGNYSCTV   86 (243)
Q Consensus        77 ~d~G~Y~C~~   86 (243)
                      +|++.|.|.-
T Consensus        88 eDTAvYYCAr   97 (126)
T d1lmka1          88 EDSAVYYCAR   97 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999964

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00013  Score=40.99  Aligned_cols=53  Identities=23%  Similarity=0.547  Sum_probs=39.3

Q ss_pred             CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEc
Q psy11132        119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASN  184 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n  184 (243)
                      .|.++.|+|... +  ...+.|.+++..++....          ..|.+.+.+. +++|.|.|....
T Consensus        13 SGTtV~LTCP~~-~--~~~I~Wkkn~~~i~g~~~----------~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          13 SGTSVELTCPLD-S--DENLKWEKNGQELPQKHD----------KHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             ETTEEEEECSSC-C--CTTCEEEETTEEECSCCC----------SEEEEESCCTTTSCEEEEEECSS
T ss_pred             eCCEEEEECCCC-C--CCceEEeeccccCCCCCC----------cEEEEccccccccCcceEEecCC
Confidence            599999999763 3  346999999998885532          3466777654 799999997443

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00011  Score=43.63  Aligned_cols=72  Identities=22%  Similarity=0.286  Sum_probs=43.9

Q ss_pred             CCCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCCeeEE-eeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132        117 LPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVS-DLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ  188 (243)
Q Consensus       117 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~~-~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  188 (243)
                      ...++.+.|.|.+.+.+|.   ..+.|.+++..+......... ..++.   .+.|.|..-..+....|+|.+.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            3457889999999655553   588899999877654222111 11222   234444433333455899999986543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00026  Score=42.80  Aligned_cols=68  Identities=13%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            35578899999999997422 2246889872  2221      11           2244444322 2235799999999


Q ss_pred             CCCeeEEEE
Q psy11132         77 RHSGNYSCT   85 (243)
Q Consensus        77 ~d~G~Y~C~   85 (243)
                      +|++.|.|.
T Consensus        89 eDtAvYYCA   97 (127)
T d1n0xh1          89 ADTAVYYCA   97 (127)
T ss_dssp             GGCEEEEEE
T ss_pred             CCceEEEEE
Confidence            999999995

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.45  E-value=0.00047  Score=41.47  Aligned_cols=68  Identities=18%  Similarity=0.405  Sum_probs=44.7

Q ss_pred             cccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGDI--PLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..++.|+++.|.|.++ +..  ...+.|+|.  |+.+      ..           ..|+.+...+ .....|.|.+++.
T Consensus        10 ~lvkPg~sl~LsC~~S-G~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAAS-GFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEc-CCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            3467899999999997 432  346889873  2211      10           2344443322 2235799999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (122)
T d1bz7b1          89 EDTAIYYCTRG   99 (122)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cCceEEEeecC
Confidence            99999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.45  E-value=0.00032  Score=41.94  Aligned_cols=70  Identities=16%  Similarity=0.337  Sum_probs=45.2

Q ss_pred             CcccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++.. ....+.|.|.  |+.+      ..           ..++.+.... .....|.+.+++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            34588899999999997422 2346888873  2211      10           2333333322 2236789999999


Q ss_pred             CCCeeEEEEEE
Q psy11132         77 RHSGNYSCTVR   87 (243)
Q Consensus        77 ~d~G~Y~C~~~   87 (243)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (120)
T d1ad9b1          89 EDTAFYFCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEEc
Confidence            99999999653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.45  E-value=0.00025  Score=42.84  Aligned_cols=69  Identities=17%  Similarity=0.375  Sum_probs=44.6

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-C----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-N----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      . .          ..|+.+...+ .....|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            3478899999999997322 2346889873  2211      1 1          2234443322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DtavYYCAr~   99 (126)
T d1dfbh1          90 DMALYYCVKG   99 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEec
Confidence            9999999654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.45  E-value=0.00026  Score=42.71  Aligned_cols=69  Identities=16%  Similarity=0.365  Sum_probs=45.1

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+...+ .....|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            4578899999999997422 2346889873  2211      10           2244443322 22357999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00073  Score=40.64  Aligned_cols=69  Identities=14%  Similarity=0.395  Sum_probs=43.4

Q ss_pred             CCCCCCCcEEEEEEeecCCC----CCEEEEEeC--CEecC--------------C--CCCeeEEee-ccceeEEEEeecC
Q psy11132        115 DGLPEGARTRVICGVTHGDP----PLTIRWLKD--GKPLS--------------P--RFPVNVSDL-DSFSSLLSINSVS  171 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--~~~~~--------------~--~~~~~~~~~-~~~~~~l~i~~~~  171 (243)
                      ..+++|++++|.|++. |..    ...+.|+|.  |+.+.              +  ..+...... ......|.|.+++
T Consensus        10 ~~v~PG~sv~LsC~~S-G~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFS-GFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             SBCCSSSEEEEEEEEE-SCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             eeECCCCCEEEEEEEc-ccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            3467899999999984 432    246889973  22111              0  011222111 1224679999999


Q ss_pred             CCCCeeEEEEEEc
Q psy11132        172 AAHSGEYTCVASN  184 (243)
Q Consensus       172 ~~d~g~y~C~~~n  184 (243)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997544

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.0002  Score=42.23  Aligned_cols=70  Identities=13%  Similarity=0.223  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132         23 VGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAE   92 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   92 (243)
                      .++.++|.|.+.+..|.  ..+.|.+++..............+   ...+.|.|..-.......|+|.+.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999764543  478898887654321111111111   12356667666555566899999876543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.42  E-value=0.00032  Score=42.18  Aligned_cols=69  Identities=20%  Similarity=0.404  Sum_probs=44.7

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-------------CCceEEEEee-eeceEEEEeecC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-------------SAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-------------~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..             ..|+.+.... .....|+|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            4578899999999997422 2346889873  2211      00             1234443322 223579999999


Q ss_pred             CCCCeeEEEEEE
Q psy11132         76 ARHSGNYSCTVR   87 (243)
Q Consensus        76 ~~d~G~Y~C~~~   87 (243)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCar~  101 (122)
T d1q9rb1          90 AEDSATYYCARD  101 (122)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEEec
Confidence            999999999753

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.42  E-value=0.00012  Score=43.94  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCC---CeeEEE
Q psy11132          9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH---SGNYSC   84 (243)
Q Consensus         9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~G~Y~C   84 (243)
                      +|.+.+.+.......++.++|.|.+.+..|. ..|.|.+++...... .......+..........+..++   ...|+|
T Consensus        12 ~P~V~l~~p~~~~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC   90 (111)
T d1pfca_          12 IPEVYLLPPPRNELSKKKVSLTCMITGFYPADINVEWDSSEPSDYKN-TPPVFDTDGSFFLYSRLKVDTDAWNNGESFTC   90 (111)
T ss_dssp             CCCCCBCCCCSCCCCTTSCCEEEEEESCCSSCCEEESSSCCTTTEEE-EEEECCSSCCCEEEEEECCCSSCCHHHHCCEE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEeeECCCcEEEEeeCCCCCcEE-cccEECCCCcEEEEEEEEECHHHhCCCCEEEE
Confidence            4555544322222246678999999866664 699998877421100 00000111111222233444544   347999


Q ss_pred             EEEeCCC
Q psy11132         85 TVRNMVA   91 (243)
Q Consensus        85 ~~~~~~~   91 (243)
                      .+.+...
T Consensus        91 ~V~H~~l   97 (111)
T d1pfca_          91 SVMHEAL   97 (111)
T ss_dssp             EEEETTT
T ss_pred             EEEeCCC
Confidence            9987643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00091  Score=40.42  Aligned_cols=25  Identities=12%  Similarity=0.166  Sum_probs=21.3

Q ss_pred             ceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132        161 FSSLLSINSVSAAHSGEYTCVASNT  185 (243)
Q Consensus       161 ~~~~l~i~~~~~~d~g~y~C~~~n~  185 (243)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        75 ~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          75 ESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             SEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCCcccCeEEEEEEecc
Confidence            3457999999999999999987654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.40  E-value=0.00062  Score=41.21  Aligned_cols=69  Identities=22%  Similarity=0.405  Sum_probs=44.8

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      ..           ..++.+.... .....|+|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            3477899999999997422 2346888873  2211      11           1234443322 22367999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DTA~YYCAr~   99 (127)
T d2fb4h1          90 DTGVYFCARD   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEEe
Confidence            9999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.40  E-value=0.00038  Score=42.16  Aligned_cols=69  Identities=28%  Similarity=0.451  Sum_probs=44.7

Q ss_pred             cccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceeec------C----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGDI--PLTIKWLKD--GRYLD------N----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~~------~----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++..-  ...+.|+|.  |+.+.      .          ..++.+.... .....|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            34778999999999974322  246889873  33221      1          1233333221 22367999999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999643

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.39  E-value=0.00033  Score=42.45  Aligned_cols=69  Identities=17%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             cccccCCeEEEEEEeeCCCC--CceeEEEEC--Ceee------c---------C--CCceEEEEee-eeceEEEEeecCC
Q psy11132         19 RTLNVGERASLICSITKGDI--PLTIKWLKD--GRYL------D---------N--SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~------~---------~--~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ..++.|+++.|+|.++ +..  ...+.|+|.  |+.+      .         +  ..++.+...+ .....|.|.+++.
T Consensus        10 ~~~kpg~sl~LsC~~S-G~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKAS-GDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEc-CCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            4578899999999997 433  346788762  2111      0         1  2344444322 2235789999999


Q ss_pred             CCCeeEEEEEEe
Q psy11132         77 RHSGNYSCTVRN   88 (243)
Q Consensus        77 ~d~G~Y~C~~~~   88 (243)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999997653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00037  Score=41.90  Aligned_cols=68  Identities=22%  Similarity=0.340  Sum_probs=44.6

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+-+      ..           ..++.+.... .....|.+.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            457889999999999732 12346889872  2211      11           2344443322 22367999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|.-
T Consensus        90 DTAvYYCAR   98 (124)
T d1yedb1          90 DSAVYFCTR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEecc
Confidence            999999964

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.37  E-value=0.00037  Score=42.01  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      .           -..|+.+.... .....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            4578899999999997422 1236789872  2211      1           02344444322 22357999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|.-
T Consensus        90 DTA~YYCAR   98 (124)
T d2b1hh1          90 DTALYYCAR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=0.00027  Score=42.15  Aligned_cols=69  Identities=22%  Similarity=0.433  Sum_probs=44.3

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------cC----------CCceEEEEee-eeceEEEEeecCCCC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------DN----------SAALSITHVD-QYNSMLVIDSVSARH   78 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~~----------~~~~~~~~~~-~~~~~l~i~~~~~~d   78 (243)
                      ..++.|+++.|+|.+++.. ....+.|+|.  |+.+      ..          ..++.+.... .....|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            3477899999999997422 2347889872  3221      11          1233333222 123578899999999


Q ss_pred             CeeEEEEEE
Q psy11132         79 SGNYSCTVR   87 (243)
Q Consensus        79 ~G~Y~C~~~   87 (243)
                      ++.|.|...
T Consensus        90 TAvYyCAr~   98 (116)
T d1fn4b1          90 TGTYYCTRD   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEee
Confidence            999999654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.35  E-value=0.00027  Score=42.36  Aligned_cols=70  Identities=17%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             CcccccCCeEEEEEEeeCCCC-CceeEEEEC--Ceee------c---C----------CCceEEEEee-eeceEEEEeec
Q psy11132         18 ERTLNVGERASLICSITKGDI-PLTIKWLKD--GRYL------D---N----------SAALSITHVD-QYNSMLVIDSV   74 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~--~~~~------~---~----------~~~~~~~~~~-~~~~~l~i~~~   74 (243)
                      ...++.|+++.|.|.+++..- ...+.|+|.  |+.+      .   .          ..++.+.... .....|.+.++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            345889999999999974222 246789872  3221      1   0          1122222211 22356999999


Q ss_pred             CCCCCeeEEEEEE
Q psy11132         75 SARHSGNYSCTVR   87 (243)
Q Consensus        75 ~~~d~G~Y~C~~~   87 (243)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAr~  101 (121)
T d1nfdf1          89 RVDDTAIYYCTRA  101 (121)
T ss_dssp             CGGGCEECEEEEE
T ss_pred             CCCcceEEEEecc
Confidence            9999999999654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.34  E-value=0.00029  Score=39.94  Aligned_cols=63  Identities=10%  Similarity=0.168  Sum_probs=38.5

Q ss_pred             CeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132         25 ERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV   90 (243)
Q Consensus        25 ~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   90 (243)
                      +.++|.|.+.+..|. ..+.|.++|.......... ...+.....+.+.  +......|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~-~~~~gtys~~s~~--~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIV-ISPSGKYNAVKLG--KYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEE-ECTTSSEEEEEEE--EETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEee-eccCCcEEEEEEE--ecCCCCEEEEEEEECC
Confidence            456899999876664 5899999998765433222 1111112233333  3344558999998754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.00033  Score=42.54  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             CcccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------cC-----------CCceEEEEee-eeceEEEEeecCC
Q psy11132         18 ERTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------DN-----------SAALSITHVD-QYNSMLVIDSVSA   76 (243)
Q Consensus        18 ~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~   76 (243)
                      ...++.|+++.|.|.+++. .....+.|+|.  |+.+      ..           ..++.+...+ .....|.+.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            3457889999999998632 22347889872  2211      11           1233333322 1235688999999


Q ss_pred             CCCeeEEEEE
Q psy11132         77 RHSGNYSCTV   86 (243)
Q Consensus        77 ~d~G~Y~C~~   86 (243)
                      +|++.|.|.-
T Consensus        89 eDtA~YYCAr   98 (130)
T d1rzga1          89 EDTAVFYCAS   98 (130)
T ss_dssp             GGCEEEEEEE
T ss_pred             CccEEEEEEE
Confidence            9999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.33  E-value=0.00097  Score=39.65  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CCC----------CCeeEEe-eccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SPR----------FPVNVSD-LDSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~~----------~~~~~~~-~~~~~~~l~i~~~~~~  173 (243)
                      ..+++|++++|.|+++ |..  .-.+.|+|.  |+.+      ...          .+..+.. .......|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~S-G~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVS-GTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             SEECTTSCEEEEEEEE-SSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEe-eecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            3457899999999994 643  447889872  2211      111          1122222 2233466999999999


Q ss_pred             CCeeEEEEEEccC
Q psy11132        174 HSGEYTCVASNTA  186 (243)
Q Consensus       174 d~g~y~C~~~n~~  186 (243)
                      |++.|.|......
T Consensus        89 DtAvYyCAr~~~~  101 (116)
T d7fabh1          89 DTAVYYCARNLIA  101 (116)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cceEEEeeeecCC
Confidence            9999999865443

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.33  E-value=0.0012  Score=40.17  Aligned_cols=69  Identities=13%  Similarity=0.287  Sum_probs=45.3

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Ceee------c-----------CCCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRYL------D-----------NSAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.+      .           -..++.+...+ .....|.+.+++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            457889999999999632 22347888872  2211      0           12344444322 22357899999999


Q ss_pred             CCeeEEEEEE
Q psy11132         78 HSGNYSCTVR   87 (243)
Q Consensus        78 d~G~Y~C~~~   87 (243)
                      |++.|.|...
T Consensus        89 DtA~YYCAr~   98 (133)
T d1rzfh1          89 DTAVYYCASN   98 (133)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEeeec
Confidence            9999999554

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.31  E-value=0.001  Score=37.56  Aligned_cols=64  Identities=17%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             CcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132        121 ARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  187 (243)
Q Consensus       121 ~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  187 (243)
                      +...|.|.+.+.+| ...+.|.++|..+...... ....++..+.+.+..+  .....|+|.+.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAI-VISPSGKYNAVKLGKY--EDSNSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEE-EECTTSSEEEEEEEEE--TTTTTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEe-eeccCCcEEEEEEEec--CCCCEEEEEEEECCc
Confidence            44589999976666 5689999999876544322 2222332333444443  344579999998643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.31  E-value=0.00058  Score=41.55  Aligned_cols=69  Identities=20%  Similarity=0.405  Sum_probs=44.7

Q ss_pred             cccccCCeEEEEEEeeCCC-CCceeEEEEC--Ceee------c-------------CCCceEEEEee-eeceEEEEeecC
Q psy11132         19 RTLNVGERASLICSITKGD-IPLTIKWLKD--GRYL------D-------------NSAALSITHVD-QYNSMLVIDSVS   75 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~------~-------------~~~~~~~~~~~-~~~~~l~i~~~~   75 (243)
                      ..++.|+++.|.|.+++.. ....+.|+|.  |+.+      .             -..++.+...+ .....|.+.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            3578899999999997422 2247888872  2211      0             01234443322 223679999999


Q ss_pred             CCCCeeEEEEEE
Q psy11132         76 ARHSGNYSCTVR   87 (243)
Q Consensus        76 ~~d~G~Y~C~~~   87 (243)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.29  E-value=0.0012  Score=39.45  Aligned_cols=69  Identities=20%  Similarity=0.456  Sum_probs=44.2

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cCC----------CCCeeEEee-ccceeEEEEeecCCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LSP----------RFPVNVSDL-DSFSSLLSINSVSAAH  174 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~~----------~~~~~~~~~-~~~~~~l~i~~~~~~d  174 (243)
                      .+++|+++.|.|.+. |..  .-.+.|+|.  |+.      +..          ..+..+... ......|.|.+++.+|
T Consensus        10 ~vkPg~sl~LsC~~S-G~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAAS-GNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEE-SCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEc-CCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            467899999999984 654  346788873  111      110          012222222 2234569999999999


Q ss_pred             CeeEEEEEEcc
Q psy11132        175 SGEYTCVASNT  185 (243)
Q Consensus       175 ~g~y~C~~~n~  185 (243)
                      +..|.|.....
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.27  E-value=0.0012  Score=39.71  Aligned_cols=69  Identities=23%  Similarity=0.440  Sum_probs=44.7

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cCC-C----------CCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LSP-R----------FPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~~-~----------~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|.++ |..  .-.+.|+|.  |+.      +.. .          .+..+... ......|.+.+++.+
T Consensus        10 lvkpg~sl~LsC~~S-G~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1          10 SVQAGGSLRLSCAAS-GSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             ECCTTCCEEEEEEEE-SCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEc-CcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            467899999999994 644  447889872  211      111 1          11222222 233456899999999


Q ss_pred             CCeeEEEEEEcc
Q psy11132        174 HSGEYTCVASNT  185 (243)
Q Consensus       174 d~g~y~C~~~n~  185 (243)
                      |++.|.|.....
T Consensus        89 DtAvYYCAr~~~  100 (124)
T d1zvya1          89 DTAIYTCGATRK  100 (124)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeeccc
Confidence            999999987543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.25  E-value=0.00087  Score=40.21  Aligned_cols=68  Identities=22%  Similarity=0.419  Sum_probs=42.9

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC---------------C--CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS---------------P--RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~---------------~--~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|.++ |..  .-.+.|+|.  |+.++               +  ..+..+... ......|.|.+++.+
T Consensus        11 ~~kpG~Sv~LsC~~S-G~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKAS-GYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEE-TCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEe-ccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            457899999999984 543  346888862  22110               0  112222222 223456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DsAvYYCA~~~  100 (119)
T d1qnzh_          90 DSAVYYCAIHY  100 (119)
T ss_dssp             GCEEEEEEECS
T ss_pred             ceeEEEEEEec
Confidence            99999996543

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.23  E-value=0.00049  Score=41.14  Aligned_cols=67  Identities=19%  Similarity=0.233  Sum_probs=37.4

Q ss_pred             CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCC---CeeEEEEEEccC
Q psy11132        119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH---SGEYTCVASNTA  186 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~g~y~C~~~n~~  186 (243)
                      .++.++|.|.+.+.+| ...++|.+++...... .......++.......-.+..++   ...|+|.+.+..
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKN-TPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEE-EEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEE-cccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4667899999976666 5799998876421100 00111112212222233344444   447999999864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.002  Score=38.27  Aligned_cols=69  Identities=20%  Similarity=0.423  Sum_probs=44.3

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CC----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SP----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      ..+.+|++++|.|.+ .|..  .-.+.|+|.  |+.+      ..          ..+..+... ......|.|.++..+
T Consensus        10 ~lvkPg~sl~LsC~~-SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1          10 GLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             SEECTTSCEEEEEEE-CSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEE-cCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            346789999999999 4654  346788862  2211      11          112333322 223456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (117)
T d1c5db1          89 DTAIYFCTRED   99 (117)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEeccC
Confidence            99999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.21  E-value=0.0029  Score=37.51  Aligned_cols=68  Identities=21%  Similarity=0.423  Sum_probs=43.8

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cC-C----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LS-P----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~-~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|+++ |..  .-.+.|+|.  |+.      +. .          ..+..+... ......|.+++++.+
T Consensus        11 ~vkpg~sl~LsC~~S-G~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          11 LVQPGGSLRLSCAAS-GFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEc-CCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            467899999999994 654  447888762  111      11 1          111222222 233456899999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999997644

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.0014  Score=36.03  Aligned_cols=54  Identities=28%  Similarity=0.471  Sum_probs=38.4

Q ss_pred             ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132         22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR   87 (243)
Q Consensus        22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   87 (243)
                      .+...|.|.|...    ...+.|++++..+......        ..+|.+-+......|.|.|...
T Consensus        20 ~~dGsV~L~Cn~~----~k~i~W~kdg~~i~~~~~~--------~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          20 RGDGSVLLTCGLT----DKTIKWLKDGSIISPLNAT--------KNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SSSCEEEEECSSS----CSCEEEEETTEECCCSSCC--------SSCCEEEETTSCCEEEEEEEES
T ss_pred             ccCCeEEEEeCCC----CcEEEEecCCceecccccc--------cceeecCCcccCCCcceEcCCC
Confidence            3566899999652    2379999999887643210        3456677778888999999653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.0032  Score=36.64  Aligned_cols=67  Identities=19%  Similarity=0.384  Sum_probs=38.1

Q ss_pred             CCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C---------C--CCCeeEEee-ccceeEEEEeecCCCCCe
Q psy11132        119 EGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S---------P--RFPVNVSDL-DSFSSLLSINSVSAAHSG  176 (243)
Q Consensus       119 ~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~---------~--~~~~~~~~~-~~~~~~l~i~~~~~~d~g  176 (243)
                      +|++++|.|++ +|..  .-.+.|+|.  |+.+      .         +  ..+..+... ......|.|.+++.+|++
T Consensus         1 PG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEEC-CSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEE-ECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            58999999999 4654  347889862  2211      1         0  111222221 122456999999999999


Q ss_pred             eEEEEEEccC
Q psy11132        177 EYTCVASNTA  186 (243)
Q Consensus       177 ~y~C~~~n~~  186 (243)
                      .|.|......
T Consensus        80 vYYCAr~~~~   89 (103)
T d1oari_          80 VYYCARMWYY   89 (103)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEeEEECCC
Confidence            9999865443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0016  Score=38.75  Aligned_cols=68  Identities=19%  Similarity=0.357  Sum_probs=43.7

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C-CC----------CCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S-PR----------FPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~-~~----------~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|.+ .|..  .-.+.|+|.  |+.+      . ..          .+..+... ......|.|.+++.+
T Consensus        10 ~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1          10 LVKPGGSVKMSCKA-SEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EECTTCCEEEEEEE-SSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEE-ccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            46789999999999 4654  447889872  2111      1 01          11222222 233456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (117)
T d1um5h1          89 DSAVYYCARSS   99 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999997543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0015  Score=39.23  Aligned_cols=68  Identities=19%  Similarity=0.398  Sum_probs=43.6

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C-C----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S-P----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~-~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|+++ |..  ...+.|+|.  |+.+      . .          ..+..+... ......|.|.+++.+
T Consensus        11 ~vkpG~sl~LsC~~S-G~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          11 LVKPGASVKISCKAS-GYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEc-cccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            357899999999994 544  446888872  2211      0 0          112222222 223456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999998754

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.16  E-value=0.0043  Score=37.29  Aligned_cols=67  Identities=22%  Similarity=0.419  Sum_probs=41.8

Q ss_pred             CCCCCCcEEEEEEeecCCC----CCEEEEEeC--CEecC-------CC---------CCeeEEee-ccceeEEEEeecCC
Q psy11132        116 GLPEGARTRVICGVTHGDP----PLTIRWLKD--GKPLS-------PR---------FPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--~~~~~-------~~---------~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      .+.+|++++|.|.+. |..    ...+.|+|.  |+.++       ..         .+..+... ......|.|.+++.
T Consensus        11 ~vkpg~sv~LsC~~S-G~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFS-GFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             EECTTCCEEEEEEEE-SSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEc-CCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            457899999999984 533    235689862  22111       10         11222221 22345699999999


Q ss_pred             CCCeeEEEEEE
Q psy11132        173 AHSGEYTCVAS  183 (243)
Q Consensus       173 ~d~g~y~C~~~  183 (243)
                      +|+..|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.15  E-value=0.0025  Score=37.84  Aligned_cols=69  Identities=19%  Similarity=0.378  Sum_probs=44.1

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CCC----------CCeeEEee-ccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SPR----------FPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~~----------~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      ..+++|+++.|.|.++ |..  .-.+.|+|.  |+.+      ...          .+..+... ......|.|++++.+
T Consensus        10 ~~vkPg~sl~LsC~~S-G~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVS-GFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             SEECTTSCEEEEEEEE-SSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEc-ccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            3467899999999995 544  446788873  2211      111          11222222 223456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998644

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.15  E-value=0.0019  Score=38.59  Aligned_cols=66  Identities=26%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CC----------CCCeeEEee-ccceeEEEEeecCCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SP----------RFPVNVSDL-DSFSSLLSINSVSAAH  174 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~----------~~~~~~~~~-~~~~~~l~i~~~~~~d  174 (243)
                      .+++|++++|.|+++ |..  .-.+.|+|.  |+.+      ..          ..+..+... ......|.|++++.+|
T Consensus        11 ~vkPG~sl~LsC~~S-G~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVY-GGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEE-SSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEc-cccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            467899999999994 654  346788872  2111      11          112333332 2334569999999999


Q ss_pred             CeeEEEEE
Q psy11132        175 SGEYTCVA  182 (243)
Q Consensus       175 ~g~y~C~~  182 (243)
                      ++.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999943

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=0.0008  Score=40.07  Aligned_cols=70  Identities=19%  Similarity=0.343  Sum_probs=44.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEe--CCEec------CCC----------CCeeEEee-ccceeEEEEeecCCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLK--DGKPL------SPR----------FPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~~~~~------~~~----------~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      ..+++|++++|+|++ .|..  .-.+.|+|  .|+.+      ...          .+..+... ......|.+++++.+
T Consensus        10 ~~vkPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1          10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             SBCCTTSEECCEEEC-CSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             ceECCCCCeEEEEEE-eCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            346789999999999 4643  44788987  22211      111          11122221 222356889999999


Q ss_pred             CCeeEEEEEEcc
Q psy11132        174 HSGEYTCVASNT  185 (243)
Q Consensus       174 d~g~y~C~~~n~  185 (243)
                      |++.|.|.....
T Consensus        89 DTAvYyCAr~~~  100 (116)
T d1fn4b1          89 DTGTYYCTRDLY  100 (116)
T ss_dssp             CCEEEEEEEECS
T ss_pred             CCEEEEEEeecC
Confidence            999999976543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.14  E-value=0.0025  Score=37.93  Aligned_cols=71  Identities=18%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cCC-----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LSP-----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~~-----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|+++ |..  .-.+.|+|.  |+.      +..           ..+..+... ......|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~~S-G~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          11 LVQPGGSLKLSCAAS-GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEC-CccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            467899999999994 654  335788762  211      111           111223222 223356899999999


Q ss_pred             CCeeEEEEEEccCc
Q psy11132        174 HSGEYTCVASNTAA  187 (243)
Q Consensus       174 d~g~y~C~~~n~~g  187 (243)
                      |++.|.|......+
T Consensus        90 DtAvYYCAr~~~~~  103 (118)
T d2fbjh1          90 DTALYYCARLHYYG  103 (118)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             cceEEEeeEecCCC
Confidence            99999998765433

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=0.0011  Score=40.29  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=44.5

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC--------------------C--CCCeeEEe-eccceeEEEEe
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS--------------------P--RFPVNVSD-LDSFSSLLSIN  168 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~--------------------~--~~~~~~~~-~~~~~~~l~i~  168 (243)
                      .+++|++++|.|+++ |..  .-.+.|+|.  |+.+.                    +  ..+..+.. .......|+|+
T Consensus        11 lvkpg~sl~LsC~~S-G~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEAS-GDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEE-SSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEc-CCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            467899999999994 653  446889873  11100                    0  01222222 22334569999


Q ss_pred             ecCCCCCeeEEEEEEcc
Q psy11132        169 SVSAAHSGEYTCVASNT  185 (243)
Q Consensus       169 ~~~~~d~g~y~C~~~n~  185 (243)
                      +++.+|++.|.|.....
T Consensus        90 ~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             cccccceeEEEEEEEee
Confidence            99999999999987643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00085  Score=36.84  Aligned_cols=64  Identities=20%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             CCCCcEEEEEEeecCCCCCEEEEEeCCEe-cCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132        118 PEGARTRVICGVTHGDPPLTIRWLKDGKP-LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  196 (243)
Q Consensus       118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~  196 (243)
                      ..|..+.|.|..   .....+.|.+++.. +...           ..++.+.--...++|+|+|. .  .|..-....+.
T Consensus        19 ~~~~~V~L~C~t---~eE~~I~W~kd~~se~~~~-----------GntltV~VkE~~~aGnYTCh-k--~g~~Lnht~lL   81 (87)
T d3d85d1          19 APGEMVVLTCDT---PEEDGITWTLDQSSEVLGS-----------GKTLTIQVKEFGDAGQYTCH-K--GGEVLSHSLLL   81 (87)
T ss_dssp             CCCEEEEEECSS---SCCSSCEEEETTCCCCCEE-----------SSEEEEEECSGGGCEEEEEE-E--TTEEEEEEEEE
T ss_pred             CCccEEEEecCC---CcccccEEeeCCccccccC-----------CCEEEEEEEeccCCcceeEe-C--CCcEeeeEEEE
Confidence            357889999954   23458999998765 2111           23455543345689999996 3  35554444443


Q ss_pred             EE
Q psy11132        197 VK  198 (243)
Q Consensus       197 v~  198 (243)
                      ++
T Consensus        82 ih   83 (87)
T d3d85d1          82 LH   83 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00051  Score=37.75  Aligned_cols=50  Identities=24%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132         23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT   85 (243)
Q Consensus        23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   85 (243)
                      .|+.+.|+|.-.  . .-.|.|.+++..-....          +.++++.--...|+|+|+|.
T Consensus        20 ~~~~V~L~C~t~--e-E~~I~W~kd~~se~~~~----------GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTP--E-EDGITWTLDQSSEVLGS----------GKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSS--C-CSSCEEEETTCCCCCEE----------SSEEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCC--c-ccccEEeeCCccccccC----------CCEEEEEEEeccCCcceeEe
Confidence            467899999642  2 23799999976521111          44566665566799999996

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.12  E-value=0.0018  Score=38.81  Aligned_cols=69  Identities=19%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cC-C----------CCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LS-P----------RFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~-~----------~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+++|+++.|.|++ +|..  .-.+.|+|.  |+.      +. .          ..+..+... ......|.|.+++.
T Consensus        11 ~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          11 EVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             EEECTTCCEEEEEEE-CSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEE-cCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            346899999999999 4654  346888872  111      11 0          112222222 22345689999999


Q ss_pred             CCCeeEEEEEEc
Q psy11132        173 AHSGEYTCVASN  184 (243)
Q Consensus       173 ~d~g~y~C~~~n  184 (243)
                      +|++.|.|....
T Consensus        90 eDtA~YYCAr~~  101 (122)
T d1vgeh1          90 EDTAVYYCARDP  101 (122)
T ss_dssp             GGCEEEEEEEET
T ss_pred             CcceEEEEeecC
Confidence            999999997754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.11  E-value=0.0014  Score=38.38  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=41.4

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CC----------CCCeeEEee-ccceeEEEEeecCCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SP----------RFPVNVSDL-DSFSSLLSINSVSAAH  174 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~----------~~~~~~~~~-~~~~~~l~i~~~~~~d  174 (243)
                      .+++|++++|.|++ .|..  .-.+.|+|.  |+.+      ..          ..+..+... ......|.|++++.+|
T Consensus         4 lvkPG~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAA-SGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCTTCCEEEEECC-CC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             EecCCCCcEEEEEE-CCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCccc
Confidence            46789999999998 4543  345788873  1111      11          112223222 2234569999999999


Q ss_pred             CeeEEEEEE
Q psy11132        175 SGEYTCVAS  183 (243)
Q Consensus       175 ~g~y~C~~~  183 (243)
                      ++.|.|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.09  E-value=0.0021  Score=38.57  Aligned_cols=68  Identities=16%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cC-C----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LS-P----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~-~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|+++ |..  .-.+.|+|.  |+.      +. .          ..+..+... ......|.|++++.+
T Consensus        11 lvkPg~sl~LsC~~S-G~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAAS-GFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEc-CCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            357899999999994 654  346788872  111      11 1          112222222 223456899999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.08  E-value=0.0026  Score=38.16  Aligned_cols=68  Identities=18%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEecC-------CC----------CCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPLS-------PR----------FPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~-------~~----------~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|+++ |..  ...+.|+|.  |+.+.       ..          .+..+... ......|.|.+++.+
T Consensus        11 ~~kpG~sv~LsC~~S-G~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          11 LVEPGASVKLSCTAS-GFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEe-cCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            467899999999984 543  447888862  22110       00          11222221 223456999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1j05b_          90 DTAVYYCAPFG  100 (121)
T ss_dssp             GCEEEEEEEEB
T ss_pred             cceEEEeEeec
Confidence            99999997654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.07  E-value=0.0037  Score=37.09  Aligned_cols=67  Identities=21%  Similarity=0.401  Sum_probs=43.2

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C---------C--CCCeeEEeec-cceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S---------P--RFPVNVSDLD-SFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~---------~--~~~~~~~~~~-~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|+++ |..  .-.+.|+|.  |+.+      .         +  ..+..+.... .....|.|.+++.+
T Consensus        11 ~~kpg~sl~lsC~~S-G~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          11 LARPGASVKLSCRTS-GYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             ECCTTCCEEEEEEEE-SSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEc-CCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            357899999999995 654  446788872  1110      0         1  1123333322 23456899999999


Q ss_pred             CCeeEEEEEE
Q psy11132        174 HSGEYTCVAS  183 (243)
Q Consensus       174 d~g~y~C~~~  183 (243)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.04  E-value=0.0012  Score=39.30  Aligned_cols=69  Identities=22%  Similarity=0.458  Sum_probs=43.9

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C-C----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S-P----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~-~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+.+|+++.|.|+++ |..  .-.+.|+|.  |+.+      . .          ..+..+... ......|.|+.++.+
T Consensus        11 ~~kPg~sv~LsC~~S-G~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          11 VKKPGASVKVSCKVS-GYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEc-CCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            357899999999994 653  345788862  2111      1 1          111222222 223456999999999


Q ss_pred             CCeeEEEEEEcc
Q psy11132        174 HSGEYTCVASNT  185 (243)
Q Consensus       174 d~g~y~C~~~n~  185 (243)
                      |++.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999987654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.04  E-value=0.0028  Score=37.46  Aligned_cols=67  Identities=19%  Similarity=0.381  Sum_probs=42.8

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cC-C----------CCCeeEEeec-cceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LS-P----------RFPVNVSDLD-SFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~-~----------~~~~~~~~~~-~~~~~l~i~~~~~  172 (243)
                      ..+++|++++|.|.++ |..  .-.+.|+|.  |+.      +. .          ..+..+.... .....|.|++++.
T Consensus        10 ~~vkpG~sl~LsC~~S-G~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAAS-GFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEC-ccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            3467899999999994 654  346788862  111      11 1          1122333222 2345699999999


Q ss_pred             CCCeeEEEEE
Q psy11132        173 AHSGEYTCVA  182 (243)
Q Consensus       173 ~d~g~y~C~~  182 (243)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999974

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.04  E-value=0.00091  Score=40.10  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             CCCCCCCcEEEEEEeecCCC----CCEEEEEeC--CEec------CCC----------CCeeEEee-ccceeEEEEeecC
Q psy11132        115 DGLPEGARTRVICGVTHGDP----PLTIRWLKD--GKPL------SPR----------FPVNVSDL-DSFSSLLSINSVS  171 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--~~~~------~~~----------~~~~~~~~-~~~~~~l~i~~~~  171 (243)
                      ..+++|++++|.|+++ |..    .-.+.|+|.  |+.+      ...          .+..+... ......|.|.+++
T Consensus        10 ~~vkPg~sl~LsC~~S-G~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVS-GFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             SEECSSSCEEEEEEEE-SSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             ceECCCCCEEEEEEEc-ccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            3467899999999995 543    235789873  2211      111          11222222 2234569999999


Q ss_pred             CCCCeeEEEEEEc
Q psy11132        172 AAHSGEYTCVASN  184 (243)
Q Consensus       172 ~~d~g~y~C~~~n  184 (243)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (120)
T d1ai1h1          89 NEDTAMYYCSREN  101 (120)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccceeEEEEEecC
Confidence            9999999997543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.03  E-value=0.0036  Score=37.74  Aligned_cols=68  Identities=21%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------C-C----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------S-P----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~-~----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|++ +|..  .-.+.|+|.  |+.+      . .          ..+..+... ......|.|++++.+
T Consensus        10 lvkPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1          10 SVQAGQSLRLSCAT-SGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EECTTCCEEEEEEC-C-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEE-CCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            45789999999998 4543  446788872  2111      1 1          012223222 223355999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999998654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.03  E-value=0.0038  Score=37.38  Aligned_cols=70  Identities=19%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             CCCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cCC-----------CCCeeEEee-ccceeEEEEeecCC
Q psy11132        115 DGLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LSP-----------RFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~~-----------~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      ..+++|+++.|.|+++ |..  .-.+.|+|.  |+.      +..           ..+..+... ......|.|.+++.
T Consensus        10 ~lvkPG~sl~LsC~~S-G~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAAS-GFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEC-cccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            3467899999999994 654  345788762  211      111           111223222 22345699999999


Q ss_pred             CCCeeEEEEEEcc
Q psy11132        173 AHSGEYTCVASNT  185 (243)
Q Consensus       173 ~d~g~y~C~~~n~  185 (243)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (123)
T d1mqkh_          89 EDTAMYYCVRHEY  101 (123)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcccceeEEecCC
Confidence            9999999976543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.02  E-value=0.0054  Score=37.09  Aligned_cols=68  Identities=24%  Similarity=0.476  Sum_probs=42.4

Q ss_pred             CCCCCCcEEEEEEeecCCC----CCEEEEEeC--CEecC--------------C--CCCeeEEee-ccceeEEEEeecCC
Q psy11132        116 GLPEGARTRVICGVTHGDP----PLTIRWLKD--GKPLS--------------P--RFPVNVSDL-DSFSSLLSINSVSA  172 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--~~~~~--------------~--~~~~~~~~~-~~~~~~l~i~~~~~  172 (243)
                      .+++|++++|.|.+. |..    ...+.|+|.  |+.+.              +  ..+..+... ......|.|.+++.
T Consensus        11 lvkPg~sv~LsC~~S-G~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          11 ILQPSQTLSLTCSFS-GFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             EECTTCCEEEEEEEE-SSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEe-CCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            457899999999984 532    224578862  11110              0  112222222 22345699999999


Q ss_pred             CCCeeEEEEEEc
Q psy11132        173 AHSGEYTCVASN  184 (243)
Q Consensus       173 ~d~g~y~C~~~n  184 (243)
                      +|++.|.|....
T Consensus        90 eDtAvYyCAr~~  101 (126)
T d1etzb1          90 SDTATYHCARRT  101 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceEEEEEec
Confidence            999999998643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.02  E-value=0.003  Score=36.97  Aligned_cols=68  Identities=19%  Similarity=0.390  Sum_probs=43.2

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cCC-------------CCCeeEEee-ccceeEEEEeecC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LSP-------------RFPVNVSDL-DSFSSLLSINSVS  171 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~~-------------~~~~~~~~~-~~~~~~l~i~~~~  171 (243)
                      .+++|++++|.|+++ |..  .-.+.|+|.  |+.      +..             ..+..+... ......|.|++++
T Consensus        11 ~vkPG~Sl~LsC~~S-G~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          11 LVQPRGSLKLSCAAS-GFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEC-CCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            467899999999994 544  346788762  211      110             112233322 2334568999999


Q ss_pred             CCCCeeEEEEEEc
Q psy11132        172 AAHSGEYTCVASN  184 (243)
Q Consensus       172 ~~d~g~y~C~~~n  184 (243)
                      .+|++.|.|.-..
T Consensus        90 ~eDTAvYYCAr~~  102 (109)
T d2ck0h1          90 TEDTGIYYCVRGR  102 (109)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HhHCEEEEEEEcC
Confidence            9999999998543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.01  E-value=0.0045  Score=36.80  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=42.7

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEe------cC---------C--CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKP------LS---------P--RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~------~~---------~--~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|+++ |..  .-.+.|+|.  |+.      +.         +  ..+..+... ......|.|.+++.+
T Consensus        11 ~~kPg~sl~LsC~~S-G~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          11 LVKPGASVKLSCKTS-GFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EECTTCCEEEEEEEE-SSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEc-cccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            457899999999995 543  346778762  211      10         1  112222222 233456899999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (118)
T d1ct8b1          90 DSAIYYCARYR  100 (118)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeec
Confidence            99999996543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.01  E-value=0.0061  Score=36.74  Aligned_cols=68  Identities=21%  Similarity=0.392  Sum_probs=43.7

Q ss_pred             CCCCCCcEEEEEEeecCCC---CCEEEEEeC--CEecC------C----------CCCeeEEe-eccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP---PLTIRWLKD--GKPLS------P----------RFPVNVSD-LDSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p---~~~~~W~~~--~~~~~------~----------~~~~~~~~-~~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|.+. |..   .-.+.|+|.  |+.++      .          ..+..+.. .......|.|.+++.+
T Consensus        11 lvkPg~sl~LsC~~S-G~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVT-GYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEE-SSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEe-cccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            457899999999995 543   246789872  22110      0          01122222 2233467999999999


Q ss_pred             CCeeEEEEEEc
Q psy11132        174 HSGEYTCVASN  184 (243)
Q Consensus       174 d~g~y~C~~~n  184 (243)
                      |++.|.|....
T Consensus        90 DtAvYyCAr~~  100 (127)
T d3cx5j1          90 DTATYYCARSE  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEeeeec
Confidence            99999998543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.00  E-value=0.0028  Score=37.67  Aligned_cols=66  Identities=20%  Similarity=0.460  Sum_probs=41.7

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEe--CCEec---------------CC--CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLK--DGKPL---------------SP--RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~~~~~---------------~~--~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|++++|.|+++ |..  ...+.|+|  .|+.+               .+  ..+..+... ......|.|.+++.+
T Consensus        11 ~~kPG~sl~LsC~~S-G~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          11 VARPGASVKMSCKAS-GYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EECTTCCEEEEEEEE-SSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEc-ccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            357899999999995 543  44677876  22211               01  112222222 223456899999999


Q ss_pred             CCeeEEEEE
Q psy11132        174 HSGEYTCVA  182 (243)
Q Consensus       174 d~g~y~C~~  182 (243)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (117)
T d1mfah1          90 DSAVYYCTR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999964

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.00  E-value=0.00017  Score=42.92  Aligned_cols=68  Identities=21%  Similarity=0.371  Sum_probs=43.6

Q ss_pred             cccccCCeEEEEEEeeCC-CCCceeEEEEC--Cee------ec-C----------CCceEEEEee-eeceEEEEeecCCC
Q psy11132         19 RTLNVGERASLICSITKG-DIPLTIKWLKD--GRY------LD-N----------SAALSITHVD-QYNSMLVIDSVSAR   77 (243)
Q Consensus        19 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~------~~-~----------~~~~~~~~~~-~~~~~l~i~~~~~~   77 (243)
                      ..++.|+++.|.|.+++. .....+.|+|.  |+.      +. .          ..++.+.... .....|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            457899999999998631 22346788873  221      11 1          1233333322 22357999999999


Q ss_pred             CCeeEEEEE
Q psy11132         78 HSGNYSCTV   86 (243)
Q Consensus        78 d~G~Y~C~~   86 (243)
                      |++.|.|.-
T Consensus        90 DTAvYYCAr   98 (117)
T d1b2wh1          90 DTAVYYCAR   98 (117)
T ss_dssp             GCEEEECCE
T ss_pred             cceEEEEcc
Confidence            999999953

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.99  E-value=0.0046  Score=37.50  Aligned_cols=69  Identities=23%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             CCCCCCcEEEEEEeecCCC--CCEEEEEeC--CEec------CC-----------CCCeeEEee-ccceeEEEEeecCCC
Q psy11132        116 GLPEGARTRVICGVTHGDP--PLTIRWLKD--GKPL------SP-----------RFPVNVSDL-DSFSSLLSINSVSAA  173 (243)
Q Consensus       116 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~------~~-----------~~~~~~~~~-~~~~~~l~i~~~~~~  173 (243)
                      .+++|+++.|.|+++ |..  .-.+.|+|.  |+.+      ..           ..+..+... ......|.|.+++.+
T Consensus        11 lvkPG~Sl~LsC~~S-G~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAAS-GFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEE-SSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEc-CCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            467899999999995 643  446788862  2111      11           112222222 122356899999999


Q ss_pred             CCeeEEEEEEcc
Q psy11132        174 HSGEYTCVASNT  185 (243)
Q Consensus       174 d~g~y~C~~~n~  185 (243)
                      |++.|.|.....
T Consensus        90 DTAvYYCAr~~~  101 (135)
T d1ieha_          90 DTAVYYCAKYSG  101 (135)
T ss_dssp             SCEEEEEEEBSS
T ss_pred             cceeeEEEEecC
Confidence            999999976543