Psyllid ID: psy11170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MFVTKIPSRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLLH
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccccccccccccccEEEEEHHHHHccccEEEEcccccc
Coil and Loop (DISEMBL)
mfvtkipsryplltlmsnmgyddkRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESfiritpwkdgkpirhyseplhyvtpillqddldifsistpllh
Flexible Loop (DISEMBL)
mfvtkipsryplLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFradaekreesfiritpwkdgkpiRHYSEPLHYVTPILLQDDLDIFSISTPLLH
Low Complexity Region (SEG)
MFVTKIPSRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLLH
Disordered region (IsUnstruct)
*******SRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAE*REESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSIS*****
Disordered Region (DISOPRED)
*******SRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALK**************IRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLL*
Disordered Region (DISEMBL)
MFVTKIPSRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLLH
Disordered Region (DISPRO)
MFVTKIPSRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFVTKIPSRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDIFSISTPLLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q96253	70	ATP synthase subunit epsi	yes	N/A	0.378	0.6	0.452	0.0006
Q06450	70	ATP synthase subunit epsi	N/A	N/A	0.378	0.6	0.452	0.0007
Q41898	70	ATP synthase subunit epsi	N/A	N/A	0.369	0.585	0.463	0.0009

>sp|Q96253|ATP5E_ARATH ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
          YI YSNI A  +R  LK   +A+A  RE+    ++ W DGKP
Sbjct: 17 YISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Arabidopsis thaliana (taxid: 3702)

>sp|Q06450|ATP5E_IPOBA ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
          YI YSN+ A  +R  LK  +RA+A  RE+     + W DGKP
Sbjct: 17 YITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKP 58

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Ipomoea batatas (taxid: 4120)

>sp|Q41898|ATP5E_MAIZE ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGK 79
          YI YSNI A  +R  LK  F+++A  RE+    I+ W DGK
Sbjct: 18 YIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGK 58

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
242023987	67	ATP synthase epsilon chain, putative [Pe	0.504	0.835	0.607	1e-11
90820042	56	putative mitochondrial ATP synthase epsi	0.387	0.767	0.744	1e-11
282847467	59	ATP synthase subunit epsilon, mitochondr	0.423	0.796	0.744	3e-11
194769141	82	GF17416 [Drosophila ananassae] gi|190619	0.414	0.560	0.673	1e-10
270004859	57	stunted [Tribolium castaneum]	0.387	0.754	0.767	3e-10
195432575	62	GK19782 [Drosophila willistoni] gi|19416	0.387	0.693	0.674	1e-09
195134628	56	GI11196 [Drosophila mojavensis] gi|19390	0.405	0.803	0.622	3e-09
195041132	56	GH12534 [Drosophila grimshawi] gi|193900	0.405	0.803	0.622	7e-09
195403211	56	GJ18479 [Drosophila virilis] gi|19414103	0.405	0.803	0.622	7e-09
17864256	61	stunted, isoform A [Drosophila melanogas	0.441	0.803	0.571	9e-09

>gi|242023987|ref|XP_002432412.1| ATP synthase epsilon chain, putative [Pediculus humanus corporis] gi|212517835|gb|EEB19674.1| ATP synthase epsilon chain, putative [Pediculus humanus corporis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLHYVTPI 94
          Y+QYSNIAAR LRRALK E RADA KREES I+ T WKDGKP+  Y+  ++++  +
Sbjct: 11 YVQYSNIAARMLRRALKPEKRADAAKREESHIKFTQWKDGKPVGVYNFNIYFLLQV 66

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820042|gb|ABD98778.1| putative mitochondrial ATP synthase epsilon chain [Graphocephala atropunctata]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPI 81
          YIQYSNIAA+ +RRALK E RA+A +R+ESF+R TPWKDGKPI
Sbjct: 11 YIQYSNIAAKLVRRALKVELRAEAARRDESFVRFTPWKDGKPI 53

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282847467|ref|NP_001164282.1| ATP synthase subunit epsilon, mitochondrial [Tribolium castaneum]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 38/47 (80%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYS 85
          YI +SNIAAR LRRALK EFRA+A KR+ES IRIT W DGKPIR  S
Sbjct: 11 YINFSNIAARLLRRALKPEFRAEAAKRDESHIRITKWADGKPIRQES 57

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194769141|ref|XP_001966665.1| GF17416 [Drosophila ananassae] gi|190619892|gb|EDV35416.1| GF17416 [Drosophila ananassae]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHY 84
          YIQYSNIAAR LR AL+TE RADA KR ES ++ TPW +G+P R Y
Sbjct: 11 YIQYSNIAARVLREALRTELRADAAKRNESHVKFTPWANGRPARTY 56

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004859|gb|EFA01307.1| stunted [Tribolium castaneum]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPI 81
          YI +SNIAAR LRRALK EFRA+A KR+ES IRIT W DGKPI
Sbjct: 11 YINFSNIAARLLRRALKPEFRAEAAKRDESHIRITKWADGKPI 53

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432575|ref|XP_002064292.1| GK19782 [Drosophila willistoni] gi|194160377|gb|EDW75278.1| GK19782 [Drosophila willistoni]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 38 CYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
           YIQYSNIAAR LR AL+TE RADA KR ES ++ TPW +G+P
Sbjct: 11 TYIQYSNIAARVLREALRTELRADAAKRNESHVKFTPWANGRP 53

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195134628|ref|XP_002011739.1| GI11196 [Drosophila mojavensis] gi|193906862|gb|EDW05729.1| GI11196 [Drosophila mojavensis]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 38 CYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIR 82
           YIQYSNIAAR LR AL+ E RADA KR E+ ++ TPW +G+P R
Sbjct: 11 TYIQYSNIAARVLRNALRAELRADAAKRNETHVKFTPWANGRPAR 55

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195041132|ref|XP_001991199.1| GH12534 [Drosophila grimshawi] gi|193900957|gb|EDV99823.1| GH12534 [Drosophila grimshawi]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 38 CYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIR 82
           YIQYSNIAAR LR AL+T+ RA A KR ES ++ TPW +G+P R
Sbjct: 11 TYIQYSNIAARVLREALRTDLRASAAKRNESHVKFTPWANGRPAR 55

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195403211|ref|XP_002060188.1| GJ18479 [Drosophila virilis] gi|194141032|gb|EDW57458.1| GJ18479 [Drosophila virilis]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 38 CYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIR 82
           YIQYSNIAAR LR +L+T+ RA A KR+ES ++ TPW +GKP R
Sbjct: 11 TYIQYSNIAARVLRESLRTDLRAAAAKRDESHVKFTPWANGKPAR 55

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17864256|ref|NP_524682.1| stunted, isoform A [Drosophila melanogaster] gi|194894162|ref|XP_001978021.1| GG19366 [Drosophila erecta] gi|195355447|ref|XP_002044203.1| GM22520 [Drosophila sechellia] gi|195479017|ref|XP_002100734.1| GE16014 [Drosophila yakuba] gi|195553727|ref|XP_002076729.1| GD24676 [Drosophila simulans] gi|7293142|gb|AAF48526.1| stunted, isoform A [Drosophila melanogaster] gi|17945453|gb|AAL48780.1| RE19513p [Drosophila melanogaster] gi|17946671|gb|AAL49366.1| RH48911p [Drosophila melanogaster] gi|190649670|gb|EDV46948.1| GG19366 [Drosophila erecta] gi|194129492|gb|EDW51535.1| GM22520 [Drosophila sechellia] gi|194188258|gb|EDX01842.1| GE16014 [Drosophila yakuba] gi|194202719|gb|EDX16295.1| GD24676 [Drosophila simulans] gi|220950884|gb|ACL87985.1| sun-PA [synthetic construct] gi|220959532|gb|ACL92309.1| sun-PA [synthetic construct]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 38 CYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSE 86
           YIQYSNIAAR LR +LKT  RADA KR+ S ++ TPW +GKP +  ++
Sbjct: 10 TYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANGKPAQRQTQ 58

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0014391	61	sun "stunted" [Drosophila mela	0.432	0.786	0.583	7.4e-11
FB|FBgn0051477	64	CG31477 [Drosophila melanogast	0.387	0.671	0.627	2.5e-10
TAIR|locus:2017657	70	AT1G51650 [Arabidopsis thalian	0.378	0.6	0.452	3e-05
UNIPROTKB|P56381	51	ATP5E "ATP synthase subunit ep	0.342	0.745	0.526	6.3e-05
MGI|MGI:1855697	52	Atp5e "ATP synthase, H+ transp	0.306	0.653	0.558	0.00013
UNIPROTKB|P05632	51	ATP5E "ATP synthase subunit ep	0.342	0.745	0.526	0.00021
UNIPROTKB|A5GFX4	51	ATP5E "ATP synthase, H+ transp	0.342	0.745	0.5	0.00021
UNIPROTKB|Q5VTU8	51	ATP5EP2 "ATP synthase subunit	0.342	0.745	0.473	0.00027
UNIPROTKB|G4N9Y1	73	MGG_03227 "Uncharacterized pro	0.369	0.561	0.439	0.00057
RGD|621374	51	Atp5e "ATP synthase, H+ transp	0.297	0.647	0.515	0.00073

FB|FBgn0014391 sun "stunted" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 28/48 (58%), Positives = 36/48 (75%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSE 86
             YIQYSNIAAR LR +LKT  RADA KR+ S ++ TPW +GKP +  ++
Sbjct:    11 YIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANGKPAQRQTQ 58

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0051477 CG31477 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPI 81
             YIQYSNIAAR +R AL+ E RADA KR  S ++ TPW +GKP+
Sbjct:    11 YIQYSNIAARVVREALRIELRADAAKRNISHVKFTPWVNGKPV 53

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

TAIR|locus:2017657 AT1G51650 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
             YI YSNI A  +R  LK   +A+A  RE+    ++ W DGKP
Sbjct:    17 YISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0006754 "ATP biosynthetic process" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

UNIPROTKB|P56381 ATP5E "ATP synthase subunit epsilon, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWK 76
             YI+YS I A+ +R ALKTEF+A+AEK   S ++I   K
Sbjct:    12 YIRYSQICAKAVRDALKTEFKANAEKTSGSNVKIVKVK 49

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

MGI|MGI:1855697 Atp5e "ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit" [Mus musculus (taxid:10090)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRI 72
             YI++S I A+ +R ALKTEF+A+AEK   S I+I
Sbjct:    12 YIRFSQICAKAVRDALKTEFKANAEKTSGSSIKI 45

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;ISA

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO;ISA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISA

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|P05632 ATP5E "ATP synthase subunit epsilon, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWK 76
             YI+YS I A+ +R ALKTEF+A+A K   S I+I   K
Sbjct:    12 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKVK 49

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|A5GFX4 ATP5E "ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit" [Sus scrofa (taxid:9823)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWK 76
             YI+YS I A+ +R ALK EF+A+AEK   S ++I   K
Sbjct:    12 YIRYSQICAKAVRDALKAEFKANAEKTSGSNVKIVKVK 49

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|Q5VTU8 ATP5EP2 "ATP synthase subunit epsilon-like protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWK 76
             YI+YS I A+ +R ALKTEF+A+A+K   + ++I   K
Sbjct:    12 YIRYSQICAKVVRDALKTEFKANAKKTSGNSVKIVKVK 49

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|G4N9Y1 MGG_03227 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGK 79
             Y +Y  IA R +RR+LK + R  AE+R E  +R   W +GK
Sbjct:    12 YNRYLAIAGRAVRRSLKEDKRIAAERRGEMELRFAKWNNGK 52

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|621374 Atp5e "ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit" [Rattus norvegicus (taxid:10116)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query:    39 YIQYSNIAARTLRRALKTEFRADAEKREESFIR 71
             YI++S I A+ +R ALKTEF+A+AEK   + I+
Sbjct:    12 YIRFSQICAKAVRDALKTEFKANAEKTSGTSIK 44

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO;IMP

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam04627	49	pfam04627, ATP-synt_Eps, Mitochondrial ATP synthas	3e-19
cd12153	45	cd12153, F1-ATPase_epsilon, eukaryotic mitochondri	2e-15

>gnl|CDD|203059 pfam04627, ATP-synt_Eps, Mitochondrial ATP synthase epsilon chain

 Score = 73.8 bits (182), Expect = 3e-19
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDG 78
          Y +YSNIAAR +RRALK E RA AE+R ES ++ T WK+G
Sbjct: 10 YNRYSNIAARAVRRALKPELRAAAERRGESEVKFTKWKNG 49

This family constitutes the mitochondrial ATP synthase epsilon subunit. This is not to be confused with the bacterial epsilon subunit, which is homologous to the mitochondrial delta subunit (pfam00401 and pfam02823) The epsilon subunit is located in the extrinsic membrane section F1, which is the catalytic site of ATP synthesis. The epsilon subunit was not well ordered in the crystal structure of bovine F1, but it is known to be located in the stalk region of F1. E subunit is thought to be involved in the regulation of ATP synthase, since a null mutation increased oligomycin sensitivity and decreased inhibition by inhibitor protein IF1. Length = 49

>gnl|CDD|213396 cd12153, F1-ATPase_epsilon, eukaryotic mitochondrial ATP synthase epsilon subunit

 Score = 64.2 bits (157), Expect = 2e-15
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPW 75
          Y++YSNI AR LRRALK  FRA A KREE+ ++ T W
Sbjct: 9  YLRYSNICARALRRALKEPFRAKALKREETELKQTKW 45

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes, and in chloroplast thylakoid membranes. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits (only found in eukaryotes, lacking in bacteria) with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.The epsilon subunit is thought to be involved in the regulation of ATP synthase, since a null mutation increased oligomycin sensitivity and decreased inhibition by inhibitor protein IF1. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF04627	50	ATP-synt_Eps: Mitochondrial ATP synthase epsilon c	99.92
KOG3495|consensus	50		99.91

>PF04627 ATP-synt_Eps: Mitochondrial ATP synthase epsilon chain; InterPro: IPR006721 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.92  E-value=6.2e-27  Score=149.03  Aligned_cols=49  Identities=49%  Similarity=0.725  Sum_probs=41.6

Q ss_pred             HHHHHhccchHHHHHHHHHHHHHhcChHHHHHHhhcccceeEEeecCCC
Q psy11170         30 FSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDG   78 (111)
Q Consensus        30 ~aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~kR~~t~lK~tkWenG   78 (111)
                      .+||+|||||++|+||||++||+|||||+|++|++|+.+++|+++|+||
T Consensus         2 ~~WR~AGlsY~~Ys~iaA~~vR~aLKe~~r~~A~~r~~~~~k~~~w~nG   50 (50)
T PF04627_consen    2 SAWRAAGLSYNKYSNIAARAVRNALKEEFRAAAEKRESTELKYTKWENG   50 (50)
T ss_dssp             -SSTTSS--HHHHHHHHHHHTTTTC-CTSTTTHHHCCS---EEEEBBTT
T ss_pred             hHHHHhCcCHHHHHHHHHHHHHHHhCchHHHHHHhcccceEEEEecCCC
Confidence            4799999999999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family constitutes the mitochondrial ATP synthase epsilon subunit, which is distinct from the bacterial epsilon subunit (the latter being homologous to the mitochondrial delta subunit, IPR001469 from INTERPRO). The mitochondrial epsilon subunit is located in the stalk region of the F1 complex, and acts as an inhibitor of the ATPase catalytic core. The epsilon subunit can assume two conformations, contracted and extended, where the latter inhibits ATP hydrolysis. The conformation of the epsilon subunit is determined by the direction of rotation of the gamma subunit, and possibly by the presence of ADP. The extended epsilon subunit is thought to become extended in the presence of ADP, thereby acting as a safety lock to prevent wasteful ATP hydrolysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OEH_R 3OE7_1 3OFN_R 3OEE_I 2HLD_I 3FKS_I 2WPD_I 3ZRY_I 2V7Q_I 1H8E_I ....

>KOG3495|consensus

Probab=99.91  E-value=1.2e-24  Score=139.97  Aligned_cols=49  Identities=45%  Similarity=0.699  Sum_probs=48.0

Q ss_pred             HHHHHhccchHHHHHHHHHHHHHhcChHHHHHHhhcccceeEEeecCCC
Q psy11170         30 FSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDG   78 (111)
Q Consensus        30 ~aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~kR~~t~lK~tkWenG   78 (111)
                      .+||+|||||++||||||++||+|||+|++.+|++|+++++|+++|+||
T Consensus         2 ~awr~aGlsYi~Ys~I~A~vvR~~LK~e~ka~a~k~~~s~~k~t~wkng   50 (50)
T KOG3495|consen    2 AAWRKAGLSYIRYSQIAAQVVRQALKTELKAEALKRPQSHVKYTKWKNG   50 (50)
T ss_pred             chHHHcCccHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCeeEEEecccC
Confidence            4899999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2xnd_I	47	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		3e-04
2w6i_I	51	Low Resolution Structures Of Bovine Mitochondrial F		3e-04
1e79_I	50	Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcar		4e-04

>pdb|2XND|I Chain I, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 47

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
          YI+YS I A+ +R ALKTEF+A+A K   S I+I  
Sbjct: 11 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 46

>pdb|2W6I|I Chain I, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 4b. Length = 51

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
          YI+YS I A+ +R ALKTEF+A+A K   S I+I  
Sbjct: 12 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 47

>pdb|1E79|I Chain I, Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide) Length = 50

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
          YI+YS I A+ +R ALKTEF+A+A K   S I+I  
Sbjct: 11 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2ck3_I	50	ATP synthase subunit epsilon\, mitochondrial; hydr	3e-15
3oee_I	61	ATP synthase subunit epsilon; ATP phosphatase, F1F	6e-15

>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I* Length = 50

 Score = 63.5 bits (154), Expect = 3e-15
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKD 77
          YI+YS I A+ +R ALKTEF+A+A K   S I+I   K 
Sbjct: 11 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKVKK 49

>3oee_I ATP synthase subunit epsilon; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_I* 3fks_I 3oe7_I* 2hld_I* 3oeh_I* 3ofn_I* 2xok_I* 3zry_I* Length = 61

 Score = 62.7 bits (152), Expect = 6e-15
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 39 YIQYSNIAARTLRRALKTEFRADA-EKREESFIRITPWKDGKPIRHYSEP 87
          Y  Y N+AA+ +R +LKTE +  +   R ++    T +K+G      SEP
Sbjct: 10 YAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAA---SEP 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3oee_I	61	ATP synthase subunit epsilon; ATP phosphatase, F1F	99.93
2ck3_I	50	ATP synthase subunit epsilon\, mitochondrial; hydr	99.9

>3oee_I ATP synthase subunit epsilon; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_I* 3fks_I 3oe7_I* 2hld_I* 3oeh_I* 3ofn_I* 4b2q_I* 2xok_I* 3zry_I*

Probab=99.93  E-value=7.5e-28  Score=158.19  Aligned_cols=56  Identities=25%  Similarity=0.337  Sum_probs=41.5

Q ss_pred             HHHHhccchHHHHHHHHHHHHHhcChHHHHHHh-hcccceeEEeecCCCcccc-cccc
Q psy11170         31 SAEVLNRCYIQYSNIAARTLRRALKTEFRADAE-KREESFIRITPWKDGKPIR-HYSE   86 (111)
Q Consensus        31 aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~-kR~~t~lK~tkWenGKp~~-~~~l   86 (111)
                      +||+|||||++|+||||++||+|||||+|++|+ +|+.+++|+++|+||++++ +.+|
T Consensus         2 ~WR~AGltY~~Ys~iaA~~vR~aLKe~~r~~A~~~R~~~~~k~~~w~nGk~~~e~~~l   59 (61)
T 3oee_I            2 AWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI   59 (61)
T ss_dssp             ------CCHHHHHHHTTTTTTC--CCSSCCHHHHTTTCCCCEEEECCC---CCCSCCE
T ss_pred             cHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhcccceEEEEeccCCcccCCCccC
Confidence            699999999999999999999999999999999 9999999999999995544 4443

>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*

Probab=99.90  E-value=4.2e-25  Score=140.45  Aligned_cols=47  Identities=43%  Similarity=0.532  Sum_probs=22.7

Q ss_pred             HHHHhccchHHHHHHHHHHHHHhcChHHHHHHhhcccceeEEeecCC
Q psy11170         31 SAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKD   77 (111)
Q Consensus        31 aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~kR~~t~lK~tkWen   77 (111)
                      +||+|||||++|+||||++||+|||||+|++|++|+++++|+++|+|
T Consensus         3 ~WR~aG~sY~~Ys~i~A~~vR~~LKe~~r~~A~~R~~~~~k~~kW~~   49 (50)
T 2ck3_I            3 YWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKVKK   49 (50)
T ss_dssp             TTSSSSCCHHHHHHHHHHHHHTC------------------------
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHhCcHHHHHHHhcccceeeeecCCC
Confidence            69999999999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d2v7qi1	47	a.137.8.1 (I:1-47) Epsilon subunit of mitochondria	3e-14

>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 47

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Epsilon subunit of mitochondrial F1F0-ATP synthase
family: Epsilon subunit of mitochondrial F1F0-ATP synthase
domain: Epsilon subunit of mitochondrial F1F0-ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.8 bits (145), Expect = 3e-14
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
          YI+YS I A+ +R ALKTEF+A+A K   S I+I  
Sbjct: 11 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2v7qi1	47	Epsilon subunit of mitochondrial F1F0-ATP synthase	99.89

>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Epsilon subunit of mitochondrial F1F0-ATP synthase
family: Epsilon subunit of mitochondrial F1F0-ATP synthase
domain: Epsilon subunit of mitochondrial F1F0-ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=9.8e-25  Score=136.23  Aligned_cols=45  Identities=42%  Similarity=0.530  Sum_probs=43.5

Q ss_pred             HHHHHhccchHHHHHHHHHHHHHhcChHHHHHHhhcccceeEEee
Q psy11170         30 FSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITP   74 (111)
Q Consensus        30 ~aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~kR~~t~lK~tk   74 (111)
                      ++||+|||||++||||||++||+|||||+|++|++|+.+++|+++
T Consensus         2 ayWR~AGlsYi~Ys~iaA~~vR~aLK~e~r~~A~~R~~~~~K~tK   46 (47)
T d2v7qi1           2 AYWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK   46 (47)
T ss_dssp             CTTTTTTCCHHHHHHHHHHHHHTTBCTTTTHHHHTSSCCCCEEEC
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHhChHHHHHHHhcccceeeeec
Confidence            479999999999999999999999999999999999999999986