Psyllid ID: psy11185

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MNKRNHKEHAPKGNLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccEEEEHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccEEEEEcccEEcccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEEcccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEEEEEEcccEEEEEEccccEEEEEccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcHHHHHHHHHHHHHcccccEEEEEEEEHHccccHHHHHHHHHHHHHccccEEccccccEEEEccccccEEEEEEEEcccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHccccccccEcccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEccEEEEccEEEEcccEEEcccEEEcccccccHHHHcEcHHHHccccccccEEEEEcccHHHHHHHHHHHHccccEEEc
Coil and Loop (DISEMBL)
mnkrnhkehapkgnlkdkvdsglecagflnglgfnATVMIrsvplrgfDQQMAKLICEEMAEggvhflhkclplsvtkladgklkVQYKNVAEvrqdnthkydydllvlgggsgGLAAAKEAAAHGRKVIVLDyvipspqgttwglggtcvnvgcipKKLMHQAALLGEAIKDAVAygweipnvksVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMkngekktlTAENILIatggrpnypdipgakehcissddifslekppgktlvvgagyigkletwdsnsgcgnvtih
Flexible Loop (DISEMBL)
mnkrnhkehapkgnlkdkvdSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVaevrqdnthkYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSpqgttwglgGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEatmkngekktLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGkletwdsnsgcgnvtih
Low Complexity Region (SEG)
MNKRNHKEHAPKGNLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDllvlgggsgglaaakeaaahgRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH
Disordered region (IsUnstruct)
*********************GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEAT******KTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGC******
Disordered Region (DISOPRED)
*******EHAPKGNLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVT**
Disordered Region (DISEMBL)
**************LKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH
Disordered Region (DISPRO)
*************NLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKRNHKEHAPKGNLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
P91938	596	Thioredoxin reductase 1,	no	N/A	0.637	0.333	0.624	3e-70
Q9VNT5	516	Thioredoxin reductase 2,	no	N/A	0.621	0.375	0.622	4e-70
Q9JLT4	524	Thioredoxin reductase 2,	yes	N/A	0.615	0.366	0.635	3e-66
Q9Z0J5	526	Thioredoxin reductase 2,	no	N/A	0.615	0.365	0.635	5e-66
Q9N2I8	511	Thioredoxin reductase 2,	no	N/A	0.602	0.367	0.651	1e-65
B9A1H3	495	Thioredoxin reductase SEP	N/A	N/A	0.602	0.379	0.617	3e-64
Q16881	649	Thioredoxin reductase 1,	yes	N/A	0.631	0.303	0.628	2e-61
Q5NVA2	499	Thioredoxin reductase 1,	yes	N/A	0.631	0.394	0.623	4e-61
Q99MD6	697	Thioredoxin reductase 3 (	no	N/A	0.634	0.284	0.603	9e-61
O62768	499	Thioredoxin reductase 1,	no	N/A	0.631	0.394	0.618	2e-60

>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 164/205 (80%), Gaps = 6/205 (2%)

Query: 94  VRQDNTH--KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ-GTTWGLGGTC 150
           VR+ +T    YDYDL+V+GGGS GLA AKEA  +G +V  LD+V P+P  GT WG+GGTC
Sbjct: 103 VRKMSTKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTC 162

Query: 151 VNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR 210
           VNVGCIPKKLMHQA+LLGEA+ +A AYGW +   + ++ +W  L ++VQNH+KSVNWVTR
Sbjct: 163 VNVGCIPKKLMHQASLLGEAVHEAAAYGWNVD--EKIKPDWHKLVQSVQNHIKSVNWVTR 220

Query: 211 VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC 270
           V LRDKKV+Y+N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ 
Sbjct: 221 VDLRDKKVEYINGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYG 279

Query: 271 ISSDDIFSLEKPPGKTLVVGAGYIG 295
           I+SDD+FSL++ PGKTLVVGAGYIG
Sbjct: 280 ITSDDLFSLDREPGKTLVVGAGYIG 304

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=2 SV=1

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 155/196 (79%), Gaps = 2/196 (1%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           +YDYDL+VLGGGS GLA AKEAA  G +V+  DYV P+P GT WG+GGTCVNVGCIPKKL
Sbjct: 30  RYDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKL 89

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQA+LLGEA+ +AVAYGW + +  +++ +W  L  +VQNH+KSVNWVTRV LRDKKV+Y
Sbjct: 90  MHQASLLGEAVHEAVAYGWNVDDT-NIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEY 148

Query: 221 LNALGKFIDQHSVE-ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL 279
           +N++  F D H++E   M   E + +T+E +++A GGRP YPDIPGA E  I+SDDIFS 
Sbjct: 149 VNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSY 208

Query: 280 EKPPGKTLVVGAGYIG 295
           E+ PG+TLVVGAGY+G
Sbjct: 209 EREPGRTLVVGAGYVG 224

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4

 Score =  252 bits (643), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 149/195 (76%), Gaps = 3/195 (1%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           +  +DLLV+GGGSGGLA AKEAA  G+KV V DYV PSP+GT WGLGGTCVNVGCIPKKL
Sbjct: 37  QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 96

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQAALLG  I+DA  YGWE+   + VQHNW  + EAVQNHVKS+NW  RV L+D+KV Y
Sbjct: 97  MHQAALLGGMIRDAHHYGWEV--AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKY 154

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDDIFSL 279
            N    F+D+H+V    K G+   L+AE+I+IATGGRP YP  + GA E+ I+SDDIF L
Sbjct: 155 FNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWL 214

Query: 280 EKPPGKTLVVGAGYI 294
           ++ PGKTLVVGA Y+
Sbjct: 215 KESPGKTLVVGASYV 229

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 150/195 (76%), Gaps = 3/195 (1%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           + ++DLLV+GGGSGGLA AKEAA  GRKV V DYV PSP+GT WGLGGTCVNVGCIPKKL
Sbjct: 39  QQNFDLLVIGGGSGGLACAKEAAQLGRKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 98

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQAALLG  I+DA  YGWE+   + VQHNW  + EAVQNHVKS+NW  RV L+D+KV Y
Sbjct: 99  MHQAALLGGMIRDAQHYGWEV--AQPVQHNWKAMAEAVQNHVKSLNWGHRVQLQDRKVKY 156

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDDIFSL 279
            N    F+++H+V    K G+   L+A++I+IATGGRP YP  + GA EH I+SDDIF L
Sbjct: 157 FNIKASFVNEHTVHGVDKAGKVTQLSAKHIVIATGGRPKYPTQVKGALEHGITSDDIFWL 216

Query: 280 EKPPGKTLVVGAGYI 294
           ++ PGKTLVVGA Y+
Sbjct: 217 KESPGKTLVVGASYV 231

Maintains mitochondrial thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 146/192 (76%), Gaps = 4/192 (2%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YDLLV+GGGSGGLA AKEAA  G+KV VLDYV PSPQGT WGLGGTCVNVGCIPKKLMHQ
Sbjct: 28  YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 87

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           AALLG  I+DA  YGW    V    H+WA L +AVQNHVKS+NW  R+ L+D+KV Y N 
Sbjct: 88  AALLGGMIRDAPHYGW---GVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNV 144

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD-IPGAKEHCISSDDIFSLEKP 282
              F+D H+V    K GE+  L+AE+I+IATGGRP YP  I GA E+ I+SDD+F L++ 
Sbjct: 145 KASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKES 204

Query: 283 PGKTLVVGAGYI 294
           PGKTLVVGA Y+
Sbjct: 205 PGKTLVVGASYV 216

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|B9A1H3|TRXR1_EMIHU Thioredoxin reductase SEP1 OS=Emiliania huxleyi GN=SEP1 PE=1 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 143/191 (74%), Gaps = 3/191 (1%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YDLLV+GGGSGGLA +K AA+HG+KV V D+V PSP GTTWGLGGTCVNVGCIPKKLMHQ
Sbjct: 8   YDLLVIGGGSGGLACSKRAASHGKKVAVCDFVKPSPPGTTWGLGGTCVNVGCIPKKLMHQ 67

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           AALLGE + DA ++GWE   V + +HNW  +   VQ H+KS+N+  R  L    V Y NA
Sbjct: 68  AALLGEGMTDAESFGWE---VAAPKHNWETMVGNVQGHIKSLNFGYRSDLMSNGVKYYNA 124

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPP 283
              F+D H+VEA  K G+   +TA  I+I TGGRP YPDIPGAKE  I+SDD+F+L+ PP
Sbjct: 125 YATFLDPHTVEAVDKKGKVTKITASEIVICTGGRPRYPDIPGAKELGITSDDVFALKSPP 184

Query: 284 GKTLVVGAGYI 294
           G+TLVVGA Y+
Sbjct: 185 GRTLVVGASYV 195

Emiliania huxleyi (taxid: 2903)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYDL+++GGGSGGLAAAKEAA +G+KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 155 EDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 214

Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 215 IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 272

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 273 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 332

Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTLVVGA Y+
Sbjct: 333 LFSLPYCPGKTLVVGASYV 351

Isoform 1 may possess glutaredoxin activity as well as thioredoxin reductase activity and induces actin and tubulin polymerization, leading to formation of cell membrane protrusions. Isoform 4 enhances the transcriptional activity of estrogen receptors alpha and beta while isoform 5 enhances the transcriptional activity of the beta receptor only. Isoform 5 also mediates cell death induced by a combination of interferon-beta and retinoic acid.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q5NVA2|TRXR1_PONAB Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYDL+++GGGSGGLAAAKEAA +G+KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 5   EDLPESYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64

Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 65  IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 122

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 123 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 182

Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTL+VGA Y+
Sbjct: 183 LFSLPYCPGKTLIVGASYV 201

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q99MD6|TRXR3_MOUSE Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2

 Score =  234 bits (596), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 156/202 (77%), Gaps = 4/202 (1%)

Query: 94  VRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
           ++ D+ H  DYDL+++GGGSGGL+ AKEAA  G+KV+VLD+V+PSPQGTTWGLGGTCVNV
Sbjct: 203 LQDDSAH--DYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNV 260

Query: 154 GCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVML 213
           GCIPKKLMHQAALLG A++DA  YGWE    + V+HNW  + EA+Q+H+ S+NW  RV L
Sbjct: 261 GCIPKKLMHQAALLGHALQDAKKYGWEYN--QQVKHNWEAMTEAIQSHIGSLNWGYRVTL 318

Query: 214 RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS 273
           R+K V Y+N+ G+F+D H ++AT K G++   TA   +IATG RP Y  I G KE+CI+S
Sbjct: 319 REKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITS 378

Query: 274 DDIFSLEKPPGKTLVVGAGYIG 295
           DD+FSL   PG TLVVGA Y+G
Sbjct: 379 DDLFSLPYCPGCTLVVGASYVG 400

Displays thioredoxin reductase, glutaredoxin and glutathione reductase activities. Catalyzes disulfide bond isomerization. Promotes disulfide bond formation between GPX4 and various sperm proteins and may play a role in sperm maturation by promoting formation of sperm structural components.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3

 Score =  233 bits (594), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 155/199 (77%), Gaps = 2/199 (1%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYDL+++GGGSGGLAAAKEAA + +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 5   KDLPEPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64

Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW +   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 65  IPKKLMHQAALLGQALRDSRNYGWNVE--ETVKHDWERMTEAVQNHIGSLNWGYRVALRE 122

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+F+  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 123 KKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 182

Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTLVVGA Y+
Sbjct: 183 LFSLPYCPGKTLVVGASYV 201

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
1848294	495	glutathione reductase family member [Mus	0.628	0.395	0.705	4e-79
312378803	510	hypothetical protein AND_09546 [Anophele	0.644	0.394	0.676	9e-77
157132842	497	thioredoxin reductase [Aedes aegypti] gi	0.647	0.406	0.678	9e-76
383854008	514	PREDICTED: thioredoxin reductase 1, mito	0.660	0.400	0.711	1e-75
328702950	492	PREDICTED: thioredoxin reductase 1, mito	0.618	0.392	0.666	2e-75
157132844	521	thioredoxin reductase [Aedes aegypti] gi	0.615	0.368	0.701	2e-75
170039980	536	thioredoxin reductase 1, mitochondrial [	0.708	0.412	0.606	5e-75
347964059	502	AGAP000565-PC [Anopheles gambiae str. PE	0.634	0.394	0.661	6e-75
119113490	529	AGAP000565-PA [Anopheles gambiae str. PE	0.621	0.366	0.670	1e-74
119113492	505	AGAP000565-PB [Anopheles gambiae str. PE	0.621	0.384	0.670	2e-74

>gi|1848294|gb|AAC69637.1| glutathione reductase family member [Musca domestica]

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 166/197 (84%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
           +H+YDYDL+V+GGGSGGLA AKEA A+G KV  LDYV P+P GT WG+GGTCVNVGCIPK
Sbjct: 7   SHEYDYDLIVIGGGSGGLACAKEAVANGAKVACLDYVKPTPLGTKWGIGGTCVNVGCIPK 66

Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
           KLMHQA+LLGE+I +A AYGWEIPN ++++  W NL +AVQNH+KSVNWVTRV LRDKKV
Sbjct: 67  KLMHQASLLGESIHEATAYGWEIPNKEAIKPKWENLVQAVQNHIKSVNWVTRVDLRDKKV 126

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
           +Y+N  G F D H+V A MKNG ++TLT  N++IA GGRP YPDIPGA E+ I+SDD+FS
Sbjct: 127 EYINGAGSFKDPHTVVAKMKNGSERTLTGRNVVIAVGGRPRYPDIPGAVEYGITSDDLFS 186

Query: 279 LEKPPGKTLVVGAGYIG 295
           L+K PGKTLVVGAGYIG
Sbjct: 187 LDKEPGKTLVVGAGYIG 203

Source: Musca domestica

Species: Musca domestica

Genus: Musca

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378803|gb|EFR25272.1| hypothetical protein AND_09546 [Anopheles darlingi]

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 138/204 (67%), Positives = 165/204 (80%), Gaps = 3/204 (1%)

Query: 92  AEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV 151
           A  +Q+N   YDYDL+V+GGGSGGLA AK+A   G KV VLD+V PSPQGT WGLGGTCV
Sbjct: 12  AFTQQEN---YDYDLVVIGGGSGGLACAKQAVQLGAKVAVLDFVKPSPQGTRWGLGGTCV 68

Query: 152 NVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRV 211
           NVGCIPKKLMHQA+LLGEAI D+  YGW+  +  SV+H+WA L E+VQNH+KSVNWVTRV
Sbjct: 69  NVGCIPKKLMHQASLLGEAIHDSQPYGWQFTDPASVRHDWATLTESVQNHIKSVNWVTRV 128

Query: 212 MLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI 271
            LRD+KV+Y+N LG F D H+V A MKN  ++ L  ++++IA GGRP YPDIPGA EHCI
Sbjct: 129 DLRDQKVEYINGLGYFRDAHTVVARMKNDTERELRTKHVVIAVGGRPRYPDIPGAVEHCI 188

Query: 272 SSDDIFSLEKPPGKTLVVGAGYIG 295
           +SDDIFSL + PGKTL+VGAGYIG
Sbjct: 189 TSDDIFSLPRAPGKTLLVGAGYIG 212

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132842|ref|XP_001662665.1| thioredoxin reductase [Aedes aegypti] gi|108881628|gb|EAT45853.1| AAEL002886-PB [Aedes aegypti]

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 164/205 (80%), Gaps = 3/205 (1%)

Query: 91  VAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC 150
           +A + Q+N   +DYDL+V+GGGSGGLA AKEA   G KV VLD+V PSP+GT WGLGGTC
Sbjct: 1   MAPINQEN---FDYDLVVIGGGSGGLACAKEAVQFGAKVAVLDFVKPSPRGTKWGLGGTC 57

Query: 151 VNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR 210
           VNVGCIPKKLMHQA+LLGEAI DA  YGW+    +SV+H+WA L E+VQNH+KSVNWVTR
Sbjct: 58  VNVGCIPKKLMHQASLLGEAIHDAQPYGWKFAEPESVKHDWATLTESVQNHIKSVNWVTR 117

Query: 211 VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC 270
           V LRDKKV+Y+N LG F D H+V A MKN  ++ L  +N++IA GGRP YP+IPGA EH 
Sbjct: 118 VDLRDKKVEYVNGLGYFKDAHNVVAVMKNQTERVLNTKNVVIAVGGRPRYPNIPGALEHG 177

Query: 271 ISSDDIFSLEKPPGKTLVVGAGYIG 295
           I+SDDIFSL   PGKTLVVGAGYIG
Sbjct: 178 ITSDDIFSLPHEPGKTLVVGAGYIG 202

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854008|ref|XP_003702514.1| PREDICTED: thioredoxin reductase 1, mitochondrial-like [Megachile rotundata]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 175/208 (84%), Gaps = 2/208 (0%)

Query: 90  NVAEVRQDNT--HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLG 147
           ++ E + D++   KY YDL+VLGGGSGGLAAAKEA  +G KV V D+V PSP+GTTWGLG
Sbjct: 15  DLVETQIDSSADQKYTYDLIVLGGGSGGLAAAKEAVNYGAKVAVFDFVTPSPRGTTWGLG 74

Query: 148 GTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW 207
           GTCVNVGCIPKKLMHQAALLGEA+ ++  YGW++P+ K+++H+W  L+ AVQNHVKSVNW
Sbjct: 75  GTCVNVGCIPKKLMHQAALLGEAVHESTFYGWQLPDPKTIKHDWEALKTAVQNHVKSVNW 134

Query: 208 VTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK 267
           VTRV LR KKV+Y+NALG F DQH+V   MKNGE+K  TA+NIL+A GGRP YPDIPGA 
Sbjct: 135 VTRVELRTKKVEYINALGYFKDQHTVCGVMKNGEEKLYTAQNILVAVGGRPRYPDIPGAL 194

Query: 268 EHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           E+ ISSDDIFSLEKPPGKTLVVGAGYIG
Sbjct: 195 EYGISSDDIFSLEKPPGKTLVVGAGYIG 222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702950|ref|XP_001942650.2| PREDICTED: thioredoxin reductase 1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 166/195 (85%), Gaps = 2/195 (1%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           +YD+DLLV+GGGSGGLA AKEA++ G++V+VLD+VIPS +GTTWG+GGTCVNVGCIPKKL
Sbjct: 9   QYDFDLLVIGGGSGGLACAKEASSFGKQVVVLDFVIPSEKGTTWGIGGTCVNVGCIPKKL 68

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQA+LLGE+I++A +YGW IP+   +  NW +L EAVQNH+KSVNWVTRV LRDKK++Y
Sbjct: 69  MHQASLLGESIQEARSYGWNIPD--PISFNWESLVEAVQNHIKSVNWVTRVQLRDKKIEY 126

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +N  G F D H+V A MKNG+++ +TA++I+IA GGRP YPD PG KE+CI+SDD+FS+ 
Sbjct: 127 VNGHGVFEDAHTVIAKMKNGKERRITAKDIVIAVGGRPRYPDFPGCKEYCITSDDLFSMP 186

Query: 281 KPPGKTLVVGAGYIG 295
             PG TLV+GAGYIG
Sbjct: 187 TSPGNTLVIGAGYIG 201

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132844|ref|XP_001662666.1| thioredoxin reductase [Aedes aegypti] gi|108881629|gb|EAT45854.1| AAEL002886-PA [Aedes aegypti]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/194 (70%), Positives = 158/194 (81%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           +DYDL+V+GGGSGGLA AKEA   G KV VLD+V PSP+GT WGLGGTCVNVGCIPKKLM
Sbjct: 33  FDYDLVVIGGGSGGLACAKEAVQFGAKVAVLDFVKPSPRGTKWGLGGTCVNVGCIPKKLM 92

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           HQA+LLGEAI DA  YGW+    +SV+H+WA L E+VQNH+KSVNWVTRV LRDKKV+Y+
Sbjct: 93  HQASLLGEAIHDAQPYGWKFAEPESVKHDWATLTESVQNHIKSVNWVTRVDLRDKKVEYV 152

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           N LG F D H+V A MKN  ++ L  +N++IA GGRP YP+IPGA EH I+SDDIFSL  
Sbjct: 153 NGLGYFKDAHNVVAVMKNQTERVLNTKNVVIAVGGRPRYPNIPGALEHGITSDDIFSLPH 212

Query: 282 PPGKTLVVGAGYIG 295
            PGKTLVVGAGYIG
Sbjct: 213 EPGKTLVVGAGYIG 226

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039980|ref|XP_001847793.1| thioredoxin reductase 1, mitochondrial [Culex quinquefasciatus] gi|167863573|gb|EDS26956.1| thioredoxin reductase 1, mitochondrial [Culex quinquefasciatus]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 172/229 (75%), Gaps = 8/229 (3%)

Query: 67  FLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHG 126
            L    PL+++   D      ++N+   R +    YDYDL+V+GGGSGGLA AKEA   G
Sbjct: 21  LLSNVCPLAMSDSGD------HQNLTPHRHEE--NYDYDLVVIGGGSGGLACAKEAIQFG 72

Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
            KV VLD+V+PSP+GT WGLGGTCVNVGCIPKKLMHQA+LLGEAI D+  YGW+     S
Sbjct: 73  AKVAVLDFVVPSPRGTKWGLGGTCVNVGCIPKKLMHQASLLGEAIHDSQPYGWKFAEPAS 132

Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLT 246
           V+H+WA L E+VQNH+KSVNWVTRV LRDKKV+Y+N  G F D H+V A MKN  ++ L+
Sbjct: 133 VKHDWATLTESVQNHIKSVNWVTRVDLRDKKVEYVNGFGYFKDAHNVVAVMKNKTERVLS 192

Query: 247 AENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            + ++IA GGRP YP+IPGA+E+ I+SDDIFSL + PGKTLVVGAGYIG
Sbjct: 193 TKYVVIAVGGRPRYPNIPGAEEYGITSDDIFSLPQEPGKTLVVGAGYIG 241

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964059|ref|XP_003437030.1| AGAP000565-PC [Anopheles gambiae str. PEST] gi|20792390|emb|CAD30858.1| thioredoxin reductase [Anopheles gambiae] gi|333466908|gb|EGK96416.1| AGAP000565-PC [Anopheles gambiae str. PEST]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 163/198 (82%)

Query: 98  NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP 157
           N   Y+YDL+V+GGGSGGLA AK+A   G KV VLD+V PSP+GT WGLGGTCVNVGCIP
Sbjct: 5   NQENYEYDLVVIGGGSGGLACAKQAVQLGAKVAVLDFVKPSPRGTKWGLGGTCVNVGCIP 64

Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           KKLMHQA+LLGEAI D+  YGW++P+  +++H+WA L E+VQNH+KSVNWVTRV LRD+K
Sbjct: 65  KKLMHQASLLGEAIHDSQPYGWQLPDPAAIRHDWATLTESVQNHIKSVNWVTRVDLRDQK 124

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
           V+Y+N LG F D H+V A MKN  ++ L A++++IA GGRP YPDIPGA E+ I+SDDIF
Sbjct: 125 VEYVNGLGYFKDDHTVVAVMKNQTERELRAKHVVIAVGGRPRYPDIPGAAEYGITSDDIF 184

Query: 278 SLEKPPGKTLVVGAGYIG 295
           SL + PG+TL+VGAGYIG
Sbjct: 185 SLPQAPGRTLLVGAGYIG 202

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113490|ref|XP_001237264.1| AGAP000565-PA [Anopheles gambiae str. PEST] gi|28865110|emb|CAD70159.1| thioredoxin-disulfide reductase [Anopheles gambiae] gi|116130384|gb|EAU77244.1| AGAP000565-PA [Anopheles gambiae str. PEST]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 162/194 (83%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           Y+YDL+V+GGGSGGLA AK+A   G KV VLD+V PSP+GT WGLGGTCVNVGCIPKKLM
Sbjct: 36  YEYDLVVIGGGSGGLACAKQAVQLGAKVAVLDFVKPSPRGTKWGLGGTCVNVGCIPKKLM 95

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           HQA+LLGEAI D+  YGW++P+  +++H+WA L E+VQNH+KSVNWVTRV LRD+KV+Y+
Sbjct: 96  HQASLLGEAIHDSQPYGWQLPDPAAIRHDWATLTESVQNHIKSVNWVTRVDLRDQKVEYV 155

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           N LG F D H+V A MKN  ++ L A++++IA GGRP YPDIPGA E+ I+SDDIFSL +
Sbjct: 156 NGLGYFKDDHTVVAVMKNQTERELRAKHVVIAVGGRPRYPDIPGAAEYGITSDDIFSLPQ 215

Query: 282 PPGKTLVVGAGYIG 295
            PG+TL+VGAGYIG
Sbjct: 216 APGRTLLVGAGYIG 229

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113492|ref|XP_310514.3| AGAP000565-PB [Anopheles gambiae str. PEST] gi|28865108|emb|CAD70158.1| thioredoxin-disulfide reductase [Anopheles gambiae] gi|116130385|gb|EAA06298.3| AGAP000565-PB [Anopheles gambiae str. PEST]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 162/194 (83%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           Y+YDL+V+GGGSGGLA AK+A   G KV VLD+V PSP+GT WGLGGTCVNVGCIPKKLM
Sbjct: 12  YEYDLVVIGGGSGGLACAKQAVQLGAKVAVLDFVKPSPRGTKWGLGGTCVNVGCIPKKLM 71

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           HQA+LLGEAI D+  YGW++P+  +++H+WA L E+VQNH+KSVNWVTRV LRD+KV+Y+
Sbjct: 72  HQASLLGEAIHDSQPYGWQLPDPAAIRHDWATLTESVQNHIKSVNWVTRVDLRDQKVEYV 131

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           N LG F D H+V A MKN  ++ L A++++IA GGRP YPDIPGA E+ I+SDDIFSL +
Sbjct: 132 NGLGYFKDDHTVVAVMKNQTERELRAKHVVIAVGGRPRYPDIPGAAEYGITSDDIFSLPQ 191

Query: 282 PPGKTLVVGAGYIG 295
            PG+TL+VGAGYIG
Sbjct: 192 APGRTLLVGAGYIG 205

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
FB|FBgn0020653	596	Trxr-1 "Thioredoxin reductase-	0.673	0.352	0.543	4e-58
UNIPROTKB|F1M0T6	695	Txnrd3 "Protein Txnrd3" [Rattu	0.682	0.306	0.520	9.6e-57
UNIPROTKB|F1NWD6	549	TXNRD1 "Uncharacterized protei	0.830	0.471	0.464	1.6e-56
UNIPROTKB|E2QRB9	541	TXNRD1 "Thioredoxin reductase	0.766	0.441	0.489	1.6e-56
FB|FBgn0037170	516	Trxr-2 "thioredoxin reductase	0.621	0.375	0.540	2.5e-56
UNIPROTKB|G1K1Q2	497	TXNRD1 "Thioredoxin reductase	0.682	0.428	0.525	4.2e-56
UNIPROTKB|G3MWU1	609	TXNRD1 "Thioredoxin reductase	0.682	0.349	0.525	4.2e-56
UNIPROTKB|O62768	499	TXNRD1 "Thioredoxin reductase	0.682	0.426	0.525	4.2e-56
RGD|61959	499	Txnrd1 "thioredoxin reductase	0.682	0.426	0.529	5.3e-56
UNIPROTKB|G3V9V0	611	Txnrd1 "Thioredoxin reductase	0.682	0.348	0.529	5.3e-56

FB|FBgn0020653 Trxr-1 "Thioredoxin reductase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 118/217 (54%), Positives = 151/217 (69%)

Query:    94 VRQDNTH--KYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQ-GTTWGLGGTC 150
             VR+ +T    YDYD                      +V  LD+V P+P  GT WG+GGTC
Sbjct:   103 VRKMSTKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTC 162

Query:   151 VNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR 210
             VNVGCIPKKLMHQA+LLGEA+ +A AYGW +   + ++ +W  L ++VQNH+KSVNWVTR
Sbjct:   163 VNVGCIPKKLMHQASLLGEAVHEAAAYGWNVD--EKIKPDWHKLVQSVQNHIKSVNWVTR 220

Query:   211 VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC 270
             V LRDKKV+Y+N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ 
Sbjct:   221 VDLRDKKVEYINGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYG 279

Query:   271 ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG 307
             I+SDD+FSL++ PGKTLVVGAGYIG LE      G G
Sbjct:   280 ITSDDLFSLDREPGKTLVVGAGYIG-LECAGFLKGLG 315

GO:0001666 "response to hypoxia" evidence=IMP

GO:0004362 "glutathione-disulfide reductase activity" evidence=IDA;NAS;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS;IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1M0T6 Txnrd3 "Protein Txnrd3" [Rattus norvegicus (taxid:10116)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 114/219 (52%), Positives = 150/219 (68%)

Query:    94 VRQDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
             ++ D+TH  DYD                     +KV+VLD+V+PSPQGT+WGLGGTCVNV
Sbjct:   203 LQDDSTH--DYDLIVIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTSWGLGGTCVNV 260

Query:   154 GCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVML 213
             GCIPKKLMHQAALLG A++DA  YGW+  N + V+HNW  +REA+QNH+ S+NW  RV L
Sbjct:   261 GCIPKKLMHQAALLGHALQDARKYGWDY-N-QQVKHNWETMREAIQNHIGSLNWGYRVTL 318

Query:   214 RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS 273
             R+K V Y+N+ G+F++ H ++AT K G++   TA   +IATG RP Y  I G KE+CI+S
Sbjct:   319 REKGVTYVNSFGEFVELHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITS 378

Query:   274 DDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             DD+FSL   PG TL+VGA Y+G LE     +G G +VT+
Sbjct:   379 DDLFSLPYCPGNTLIVGASYVG-LECAGFLAGLGLDVTV 416

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|F1NWD6 TXNRD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 124/267 (46%), Positives = 164/267 (61%)

Query:    50 QQMAKLICEEMAEGG--VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT--HKYDYD 105
             Q++  ++CE  AE    V F+ +       K      + + + V E+       H YDYD
Sbjct:     7 QKLQGVLCEVTAETSQPVGFVEEKQIEGHEKTLKAHKEDKPQKVLEMNGHTAVPHSYDYD 66

Query:   106 XXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAA 165
                                  +KV+VLD+V P+P G +WGLGGTCVNVGCIPKKLMHQAA
Sbjct:    67 LIVIGGGSGGLAAAKEAAKYEKKVMVLDFVTPTPLGNSWGLGGTCVNVGCIPKKLMHQAA 126

Query:   166 LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALG 225
             LLG+A++D+  +GW+    + V+HNW  + E+VQN++ S+NW  RV LR+KKV Y NA G
Sbjct:   127 LLGQALQDSRKFGWQF--TEEVKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYG 184

Query:   226 KFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGK 285
             +F+  H+V+AT K G +K  TAE  LIATG RP Y  IPG KE+CISSDD+FSL   PGK
Sbjct:   185 EFVGPHTVKATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGK 244

Query:   286 TLVVGAGYIGKLETWDSNSGCG-NVTI 311
             TLVVGA Y+  LE     +G G +VT+
Sbjct:   245 TLVVGASYVA-LECAGFLAGLGLDVTV 270

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

UNIPROTKB|E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 120/245 (48%), Positives = 159/245 (64%)

Query:    70 KCLPLSVTKLADGKLKVQYKNVAEVR--QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXR 127
             K L L VT  ++   + + + + ++   +D    YDYD                     +
Sbjct:    21 KVLGLQVTTFSEAYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGK 80

Query:   128 KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSV 187
             KV+VLD+V P+P GT WGLGGTCVNVGCIPKKLMHQAALLG+A++D+  YGW++   ++V
Sbjct:    81 KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE--ETV 138

Query:   188 QHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTA 247
             +H+W  + EAVQNH+ S+NW  RV LR+KKV Y NA G+FI  H ++AT   G++K  +A
Sbjct:   139 KHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSA 198

Query:   248 ENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG 307
             E  LIATG RP Y  IPG KE+CISSDD+FSL   PGKTLVVGA Y+  LE     +G G
Sbjct:   199 ERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVA-LECAGFLAGIG 257

Query:   308 -NVTI 311
              +VT+
Sbjct:   258 LDVTV 262

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

FB|FBgn0037170 Trxr-2 "thioredoxin reductase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 106/196 (54%), Positives = 138/196 (70%)

Query:   101 KYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
             +YDYD                      +V+  DYV P+P GT WG+GGTCVNVGCIPKKL
Sbjct:    30 RYDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKL 89

Query:   161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
             MHQA+LLGEA+ +AVAYGW + +  +++ +W  L  +VQNH+KSVNWVTRV LRDKKV+Y
Sbjct:    90 MHQASLLGEAVHEAVAYGWNVDDT-NIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEY 148

Query:   221 LNALGKFIDQHSVE-ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL 279
             +N++  F D H++E   M   E + +T+E +++A GGRP YPDIPGA E  I+SDDIFS 
Sbjct:   149 VNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSY 208

Query:   280 EKPPGKTLVVGAGYIG 295
             E+ PG+TLVVGAGY+G
Sbjct:   209 EREPGRTLVVGAGYVG 224

GO:0016209 "antioxidant activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0045454 "cell redox homeostasis" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G1K1Q2 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 114/217 (52%), Positives = 145/217 (66%)

Query:    96 QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
             +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct:     5 KDLPEPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64

Query:   156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
             IPKKLMHQAALLG+A++D+  YGW +   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct:    65 IPKKLMHQAALLGQALRDSRNYGWNVE--ETVKHDWERMTEAVQNHIGSLNWGYRVALRE 122

Query:   216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             KKV Y NA G+F+  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct:   123 KKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 182

Query:   276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct:   183 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 218

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|G3MWU1 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 114/217 (52%), Positives = 145/217 (66%)

Query:    96 QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
             +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct:   117 KDLPEPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 176

Query:   156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
             IPKKLMHQAALLG+A++D+  YGW +   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct:   177 IPKKLMHQAALLGQALRDSRNYGWNVE--ETVKHDWERMTEAVQNHIGSLNWGYRVALRE 234

Query:   216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             KKV Y NA G+F+  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct:   235 KKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 294

Query:   276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct:   295 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 330

GO:0008283 "cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|O62768 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 114/217 (52%), Positives = 145/217 (66%)

Query:    96 QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
             +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct:     5 KDLPEPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64

Query:   156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
             IPKKLMHQAALLG+A++D+  YGW +   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct:    65 IPKKLMHQAALLGQALRDSRNYGWNVE--ETVKHDWERMTEAVQNHIGSLNWGYRVALRE 122

Query:   216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             KKV Y NA G+F+  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct:   123 KKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 182

Query:   276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct:   183 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 218

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|61959 Txnrd1 "thioredoxin reductase 1" [Rattus norvegicus (taxid:10116)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 115/217 (52%), Positives = 145/217 (66%)

Query:    96 QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
             +D    YD+D                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct:     5 KDAPKSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64

Query:   156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
             IPKKLMHQAALLG+A+KD+  YGW++ +  +V+H+W  + E+VQNH+ S+NW  RV LR+
Sbjct:    65 IPKKLMHQAALLGQALKDSRNYGWKLED--TVKHDWEKMTESVQNHIGSLNWGYRVALRE 122

Query:   216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             KKV Y NA GKFI  H + AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct:   123 KKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDD 182

Query:   276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct:   183 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 218

GO:0001707 "mesoderm formation" evidence=IEA;ISO

GO:0001890 "placenta development" evidence=IEP

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006749 "glutathione metabolic process" evidence=IEP

GO:0006790 "sulfur compound metabolic process" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0007369 "gastrulation" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0010269 "response to selenium ion" evidence=IEP

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0016174 "NAD(P)H oxidase activity" evidence=IDA

GO:0016259 "selenocysteine metabolic process" evidence=IMP

GO:0033797 "selenate reductase activity" evidence=IDA

GO:0042191 "methylmercury metabolic process" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042537 "benzene-containing compound metabolic process" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045340 "mercury ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048678 "response to axon injury" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0055093 "response to hyperoxia" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070276 "halogen metabolic process" evidence=IEP

GO:0070995 "NADPH oxidation" evidence=IDA

GO:0071280 "cellular response to copper ion" evidence=IEP

GO:0071455 "cellular response to hyperoxia" evidence=IEP

UNIPROTKB|G3V9V0 Txnrd1 "Thioredoxin reductase 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 115/217 (52%), Positives = 145/217 (66%)

Query:    96 QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
             +D    YD+D                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct:   119 KDAPKSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 178

Query:   156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
             IPKKLMHQAALLG+A+KD+  YGW++ +  +V+H+W  + E+VQNH+ S+NW  RV LR+
Sbjct:   179 IPKKLMHQAALLGQALKDSRNYGWKLED--TVKHDWEKMTESVQNHIGSLNWGYRVALRE 236

Query:   216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             KKV Y NA GKFI  H + AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct:   237 KKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDD 296

Query:   276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
             +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct:   297 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 332

GO:0001707 "mesoderm formation" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61076	TRXR2_PLAF7	1, ., 8, ., 1, ., 9	0.55	0.6185	0.3128	yes	N/A
Q5NVA2	TRXR1_PONAB	1, ., 8, ., 1, ., 9	0.6231	0.6314	0.3947	yes	N/A
Q16881	TRXR1_HUMAN	1, ., 8, ., 1, ., 9	0.6281	0.6314	0.3035	yes	N/A
Q17745	TRXR1_CAEEL	1, ., 8, ., 1, ., 9	0.5387	0.7179	0.3358	yes	N/A
Q9JLT4	TRXR2_MOUSE	1, ., 8, ., 1, ., 9	0.6358	0.6153	0.3664	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	312
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	1e-101
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	4e-88
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	5e-64
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-49
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-44
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-42
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	6e-41
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-40
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	2e-37
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	6e-36
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	4e-34
PLN02546	558	PLN02546, PLN02546, glutathione reductase	2e-33
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-30
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-30
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	1e-29
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	5e-29
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	2e-27
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	4e-27
TIGR02053	463	TIGR02053, MerA, mercuric reductase	7e-27
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-25
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-21
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	2e-20
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	4e-20
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	9e-20
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	2e-19
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	7e-19
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-18
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	3e-17
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	6e-17
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	2e-15
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	3e-15
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	3e-14
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	2e-13
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	4e-12
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-10
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	7e-08
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-07
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	1e-06
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	2e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	5e-06
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	6e-06
PLN02546	558	PLN02546, PLN02546, glutathione reductase	6e-06
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	1e-05
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	1e-05
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	8e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-04
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	3e-04
PLN02463	447	PLN02463, PLN02463, lycopene beta cyclase	4e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	4e-04
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	4e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-04
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	6e-04
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	6e-04
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	7e-04
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	9e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.001
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	0.002
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	0.002
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.002
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.002
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.003
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	0.004
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.004
PRK08274	466	PRK08274, PRK08274, tricarballylate dehydrogenase;	0.004
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	0.004

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  306 bits (784), Expect = e-101
 Identities = 127/193 (65%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           YDYDL+V+GGGSGGLAAAKEAAA+G KV++LD+V P+P GT WG+GGTCVNVGCIPKKLM
Sbjct: 1   YDYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           HQAALLG+A+KD+  YGW++    +V+H+W  L EAVQNH+ S+NW  RV LR+KKV Y 
Sbjct: 61  HQAALLGQALKDSRNYGWKVEE--TVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYE 118

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           NA  +F+D+H ++AT K G++K  +AE  LIATG RP YP IPGAKE CI+SDD+FSL  
Sbjct: 119 NAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPY 178

Query: 282 PPGKTLVVGAGYI 294
            PGKTLVVGA Y+
Sbjct: 179 CPGKTLVVGASYV 191

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  271 bits (695), Expect = 4e-88
 Identities = 119/202 (58%), Positives = 148/202 (73%), Gaps = 8/202 (3%)

Query: 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
             + YDL+V+GGGSGG+AAAKEAAAHG+KV + DYV PS QGT WGLGGTCVNVGC+PKK
Sbjct: 2   LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKK 61

Query: 160 LMHQAALLGEAIK-DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
           LMH AA +G     D+  YGW+  +      NW  L   VQNH++S+N+  R  LR  KV
Sbjct: 62  LMHYAANIGSIFHHDSQMYGWKTSSS----FNWGKLVTTVQNHIRSLNFSYRTGLRSSKV 117

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDDIF 277
           +Y+N L K  D+H+V     N +++T+TA+ ILIATGGRP+ P D+PGAKE+ I+SDDIF
Sbjct: 118 EYINGLAKLKDEHTVSYG-DNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIF 176

Query: 278 SLEKPPGKTLVVGAGYIGKLET 299
           SL K PGKTL+VGA YIG LET
Sbjct: 177 SLSKDPGKTLIVGASYIG-LET 197

Length = 499

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  208 bits (531), Expect = 5e-64
 Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 19/195 (9%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
            DYDL+V+GGGSGG+A+A  AA +G KV +++            LGGTCVNVGC+PKKLM
Sbjct: 3   KDYDLIVIGGGSGGIASANRAAMYGAKVALIEA---------KRLGGTCVNVGCVPKKLM 53

Query: 162 HQAALLGEAIKD-AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
              A + EA  D A  YG+   +V   + +WA L      ++  ++   R  L +  VD 
Sbjct: 54  WYGAQIAEAFHDYAPGYGF---DVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDL 110

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +    +F+D H+VE    NGE+   TA++ILIATGGRP+ PDIPGA E+ I+SD  F+LE
Sbjct: 111 IEGFARFVDAHTVEV---NGER--YTADHILIATGGRPSIPDIPGA-EYGITSDGFFALE 164

Query: 281 KPPGKTLVVGAGYIG 295
           + P +  VVGAGYI 
Sbjct: 165 ELPKRVAVVGAGYIA 179

Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  170 bits (433), Expect = 2e-49
 Identities = 71/195 (36%), Positives = 98/195 (50%), Gaps = 15/195 (7%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM- 161
           +YD++V+G G  G  AA  AA  G KV +   V          LGGTC+NVGCIP K + 
Sbjct: 4   EYDVVVIGAGPAGYVAAIRAAQLGLKVAL---VEKGE-----RLGGTCLNVGCIPSKALL 55

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H A ++ EA   A  YG      K    ++  L       V+ +      +L+   VD +
Sbjct: 56  HAAEVIEEARHAAKEYGISAEVPKI---DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI 112

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI-SSDDIFSLE 280
               +F+D H+VE T    +K+T+TA+NI+IATG RP  P  PG     I  S D   L 
Sbjct: 113 RGEARFVDPHTVEVT--GEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLL 170

Query: 281 KPPGKTLVVGAGYIG 295
           + P   ++VG GYIG
Sbjct: 171 ELPKSLVIVGGGYIG 185

Length = 454

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score =  156 bits (397), Expect = 2e-44
 Identities = 74/196 (37%), Positives = 100/196 (51%), Gaps = 20/196 (10%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIV--LDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
           +DYDL V+G GSGG+ AA+ AAA G KV +     V           GGTCV  GC+PKK
Sbjct: 1   FDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEFRV-----------GGTCVIRGCVPKK 49

Query: 160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD 219
           LM  A+   E  +DA  YGW    V   + +W  L  A    +  ++ + R  L +   +
Sbjct: 50  LMVYASQFAEHFEDAAGYGWT---VGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAE 106

Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL 279
            L+   + +  ++VE        KT TAE ILIA GGRP  P +PG  E  I+S++ F L
Sbjct: 107 LLDGRAELVGPNTVEVLASG---KTYTAEKILIAVGGRPPKPALPGH-ELGITSNEAFHL 162

Query: 280 EKPPGKTLVVGAGYIG 295
              P   L+ G GYI 
Sbjct: 163 PTLPKSILIAGGGYIA 178

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score =  152 bits (386), Expect = 2e-42
 Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 13/219 (5%)

Query: 79  LADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP- 137
           L DG++      V     + TH YD+DL V+G GSGG+ AA+ +A  G KV + +  +P 
Sbjct: 6   LIDGEVAK----VNADEANATH-YDFDLFVIGAGSGGVRAARFSANFGAKVGICE--LPF 58

Query: 138 SPQGTTW--GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLR 195
            P  +    G+GGTCV  GC+PKK++   A  G   +DA  YGWEI     V  NW  L 
Sbjct: 59  HPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEINE--KVDFNWKKLL 116

Query: 196 EAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG 255
           +   + +  +N + + +L +  V      GK +  + VE T  +G K   TA++ILIATG
Sbjct: 117 QKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATG 176

Query: 256 GRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
            R   P+IPG KE  I+SD+  SLE+ P + +V+G GYI
Sbjct: 177 SRAQRPNIPG-KELAITSDEALSLEELPKRAVVLGGGYI 214

Length = 499

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score =  147 bits (373), Expect = 6e-41
 Identities = 81/193 (41%), Positives = 112/193 (58%), Gaps = 18/193 (9%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD LV+GGGSGG+A+A+ AA HG K ++++            LGGTCVNVGC+PKK+M  
Sbjct: 3   YDYLVIGGGSGGIASARRAAEHGAKALLVE---------AKKLGGTCVNVGCVPKKVMWY 53

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           A+ L E + DA  YG+          NW  L+E    +V  +N + +  L   KVD +  
Sbjct: 54  ASDLAERMHDAADYGF--YQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFG 111

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD-IPGAKEHCISSDDIFSLEKP 282
             +F    +VE    NG     TA +ILIATGG+P++P+ IPGA E    SD  F+LE+ 
Sbjct: 112 HARFTKDGTVEV---NGRD--YTAPHILIATGGKPSFPENIPGA-ELGTDSDGFFALEEL 165

Query: 283 PGKTLVVGAGYIG 295
           P + ++VGAGYI 
Sbjct: 166 PKRVVIVGAGYIA 178

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score =  144 bits (367), Expect = 6e-40
 Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 33/206 (16%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YD++V+G G  G  AA+ AA  G+KV +++      +G    LGGTC+NVGCIP K + 
Sbjct: 3   KYDVIVIGAGPAGYVAARRAAKLGKKVALIE------KGP---LGGTCLNVGCIPSKALI 53

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS-----VNWVTRVMLRDKK 217
            AA      K A  +G  I +    + ++      V   V+      V  V   + +  K
Sbjct: 54  AAAEAFHEAKHAEEFG--I-HADGPKIDFK----KVMARVRRERDRFVGGVVEGLEKKPK 106

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE----HCISS 273
           +D +    +F+D ++VE        + + A+NI+IATG R   P IPG         ++S
Sbjct: 107 IDKIKGTARFVDPNTVEV-----NGERIEAKNIVIATGSR--VPPIPGVWLILGDRLLTS 159

Query: 274 DDIFSLEKPPGKTLVVGAGYIGKLET 299
           DD F L+K P    V+G G IG LE 
Sbjct: 160 DDAFELDKLPKSLAVIGGGVIG-LEL 184

Length = 460

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score =  138 bits (349), Expect = 2e-37
 Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 104 YDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
           +DL+V+G GSGGL A   AA  + ++V V+D            LGGTCVNVGC+PKKLM 
Sbjct: 4   FDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPFYAALGGTCVNVGCVPKKLMV 63

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYL 221
             A   + ++++  +GWE  +  SV+ NW  L  A    V  +N     M  D + + + 
Sbjct: 64  TGAQYMDTLRESAGFGWEF-DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFF 122

Query: 222 NALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
              G   D++ V     A  K+  K+ L AE+IL+ATG  P    IPG  EHCISS++ F
Sbjct: 123 LGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGI-EHCISSNEAF 181

Query: 278 SLEKPPGKTLVVGAGYI 294
            L++PP + L VG G+I
Sbjct: 182 YLDEPPRRVLTVGGGFI 198

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  134 bits (339), Expect = 6e-36
 Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 15/194 (7%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD++V+GGG GG  AA  AA  G KV +    +         LGGTC+NVGCIP K +  
Sbjct: 2   YDVIVIGGGPGGYVAAIRAAQLGLKVAL----VEKEY-----LGGTCLNVGCIPTKALLH 52

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           +A + + IK A   G E+ NV     +W  +++     VK +      +L+  KV  +  
Sbjct: 53  SAEVYDEIKHAKDLGIEVENVSV---DWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKG 109

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC--ISSDDIFSLEK 281
             KF+D  +V  T +NGE +TL A+NI+IATG RP     P   +    I+S    +LE+
Sbjct: 110 EAKFLDPGTVSVTGENGE-ETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEE 168

Query: 282 PPGKTLVVGAGYIG 295
            P   +++G G IG
Sbjct: 169 VPESLVIIGGGVIG 182

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score =  130 bits (328), Expect = 4e-34
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 39/216 (18%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YDL+V+GGGSGG+AAA+ AA +  KV +++            LGGTCVNVGC+PKK+M 
Sbjct: 48  VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY---------LGGTCVNVGCVPKKIMF 98

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
            AA + + ++++  YG++         N   L E    +++ +N + R  L+   V+Y  
Sbjct: 99  NAASIHDILENSRHYGFDTQFS----FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFE 154

Query: 223 ALGKFIDQHSV------------------------EATMKNGEKKTLTAENILIATGGRP 258
             G  + ++ V                            +  + + +  +NILIA G +P
Sbjct: 155 GKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKP 214

Query: 259 NYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
            +PD+ G KE  ISSDD F +++   +  + G+GYI
Sbjct: 215 IFPDVKG-KEFTISSDDFFKIKEAK-RIGIAGSGYI 248

Length = 561

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score =  128 bits (323), Expect = 2e-33
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGC 155
           ++   YD+DL  +G GSGG+ A++ A+  G    V +    +    T  G+GGTCV  GC
Sbjct: 73  ESERHYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGC 132

Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           +PKKL+  A+      +++  +GW+       +H+W  L       ++ +  + + +L++
Sbjct: 133 VPKKLLVYASKYSHEFEESRGFGWKYET--EPKHDWNTLIANKNAELQRLTGIYKNILKN 190

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
             V  +   GK +D H+V+      + K  TA NILIA GGRP  PDIPG  EH I SD 
Sbjct: 191 AGVTLIEGRGKIVDPHTVDV-----DGKLYTARNILIAVGGRPFIPDIPG-IEHAIDSDA 244

Query: 276 IFSLEKPPGKTLVVGAGYI 294
              L   P K  +VG GYI
Sbjct: 245 ALDLPSKPEKIAIVGGGYI 263

Length = 558

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  116 bits (292), Expect = 1e-30
 Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 45/195 (23%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA 164
           D++++GGG  GLAAA   A  G KV +++             GGTC N GC+PKKL+ + 
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIE-----------REGGTCYNRGCLPKKLLLEV 49

Query: 165 ALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL 224
           A   E                             +   K       V+L  + VD     
Sbjct: 50  AEGLELAIGL---------------------ALPEEVYKEFG--VEVLLGTEVVDIDRGE 86

Query: 225 GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH----CISSDDIFSLE 280
              + +            + +T + ++IATG RP  P IPG +       I SD+I  L 
Sbjct: 87  KTVVLKDVE-------TGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELL 139

Query: 281 KPPGKTLVVGAGYIG 295
           + P + +VVG GYIG
Sbjct: 140 ELPKRVVVVGGGYIG 154

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score =  118 bits (298), Expect = 3e-30
 Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 36/205 (17%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL--DYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           +YD++V+G G GG  AA  AA  G KV ++  +            LGGTC+N GCIP K 
Sbjct: 4   EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-----------LGGTCLNRGCIPSKA 52

Query: 161 MHQAALLGEAIKDAVAYGWEIPNV----KSVQHNWAN-----LREAVQNHVKSVNWVTRV 211
           +  AA   +  + +  +G +  NV    K VQ  W N     L   V+  +K        
Sbjct: 53  LLHAAERADEARHSEDFGIKAENVGIDFKKVQ-EWKNGVVNRLTGGVEGLLKK------- 104

Query: 212 MLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHC 270
                KVD +    K +D ++V    ++GE +T TA+NI++ATG RP   P I       
Sbjct: 105 ----NKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVI 159

Query: 271 ISSDDIFSLEKPPGKTLVVGAGYIG 295
            +SD+  +L++ P   +V+G GYIG
Sbjct: 160 WTSDEALNLDEVPKSLVVIGGGYIG 184

Length = 462

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score =  116 bits (294), Expect = 1e-29
 Identities = 64/204 (31%), Positives = 92/204 (45%), Gaps = 26/204 (12%)

Query: 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
           H YDYDL+V+G G  G  AA +AA  G++V V++            +GG C + G IP K
Sbjct: 2   HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE--------RYRNVGGGCTHTGTIPSK 53

Query: 160 LMHQAALL-------GEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVM 212
            + +A L               V       ++       A     +   V+    V R  
Sbjct: 54  ALREAVLRLIGFNQNPLYSSYRVKLRITFADLL------ARADHVINKQVE----VRRGQ 103

Query: 213 LRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCI 271
               +VD +    +F+D H+VE    +GE +TLTA+ I+IATG RP  P D+        
Sbjct: 104 YERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY 163

Query: 272 SSDDIFSLEKPPGKTLVVGAGYIG 295
            SD I SL+  P   ++ GAG IG
Sbjct: 164 DSDSILSLDHLPRSLIIYGAGVIG 187

Length = 461

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score =  115 bits (290), Expect = 5e-29
 Identities = 66/203 (32%), Positives = 91/203 (44%), Gaps = 31/203 (15%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD +V+G G  G   A  AA  G KV ++             LGGTCVN GC+P K +  
Sbjct: 6   YDAIVIGAGQAGPPLAARAAGLGMKVALI--------ERGL-LGGTCVNTGCVPTKTLIA 56

Query: 164 AALLGEAIKDAVAYGWEIP-----NVKSVQHNWANLREAVQN-HVKSVNWVTRVMLRDKK 217
           +A      + A  YG  +      + K+V    A  R         S  W     LR  +
Sbjct: 57  SARAAHLARRAAEYGVSVGGPVSVDFKAVM---ARKRRIRARSRHGSEQW-----LRGLE 108

Query: 218 -VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDD 275
            VD      +F   ++V      GE  TL A+ I I TG R   P IPG  E   ++++ 
Sbjct: 109 GVDVFRGHARFESPNTVRV---GGE--TLRAKRIFINTGARAAIPPIPGLDEVGYLTNET 163

Query: 276 IFSLEKPPGKTLVVGAGYIGKLE 298
           IFSL++ P   +++G GYIG LE
Sbjct: 164 IFSLDELPEHLVIIGGGYIG-LE 185

Length = 463

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score =  110 bits (278), Expect = 2e-27
 Identities = 67/198 (33%), Positives = 96/198 (48%), Gaps = 17/198 (8%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
             ++VLG G  G +AA  AA  G + V V  Y           LGG C+NVGCIP K L+
Sbjct: 5   TQVVVLGAGPAGYSAAFRAADLGLETVCVERYST---------LGGVCLNVGCIPSKALL 55

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H A ++ EA K    +G      K    +   +R   +  VK +      M + +KV  +
Sbjct: 56  HVAKVIEEA-KALAEHGIVFGEPKI---DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVV 111

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLE 280
           N LGKF   +++E T ++G+   +  +N +IA G RP   P IP        S D   L+
Sbjct: 112 NGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELK 171

Query: 281 KPPGKTLVVGAGYIGKLE 298
           + P + LV+G G IG LE
Sbjct: 172 EVPKRLLVMGGGIIG-LE 188

Length = 471

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score =  109 bits (276), Expect = 4e-27
 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 42/211 (19%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LMH 162
           YDL+++GGG GG  AA  A   G K  +++      +G    LGGTC++ GCIP K L+H
Sbjct: 5   YDLVIIGGGPGGYVAAIRAGQLGLKTALVE------KGK---LGGTCLHKGCIPSKALLH 55

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW----VTRV------M 212
            A +  +  K A  +G  +                  +  K        V R+      +
Sbjct: 56  SAEVF-QTAKKASPFGISVSGP-------------ALDFAKVQERKDGIVDRLTKGVAAL 101

Query: 213 LRDKKVDYLNALGKFID-------QHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIP 264
           L+  K+D  + +G+ +          +V    + GE + +  EN+LIATG RP   P +P
Sbjct: 102 LKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161

Query: 265 GAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
              E+ ISSD+  SLE  P   ++VG G IG
Sbjct: 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIG 192

Length = 472

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score =  109 bits (274), Expect = 7e-27
 Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 34/202 (16%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YDL+++G G+   AAA +AA  G  V +++      +G    LGGTCVNVGC+P K++ +
Sbjct: 1   YDLVIIGSGAAAFAAAIKAAELGASVAMVE------RGP---LGGTCVNVGCVPSKMLLR 51

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK------ 217
           AA         VA+    P    +    A     +    + V  V    LR +K      
Sbjct: 52  AA--------EVAHYARKPPFGGLAATVAVDFGELLEGKREV--VEE--LRHEKYEDVLS 99

Query: 218 ---VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISS 273
              VDYL    +F D  +V+    +  ++   A+  LIATG RP  P IPG KE   ++S
Sbjct: 100 SYGVDYLRGRARFKDPKTVKV---DLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTS 156

Query: 274 DDIFSLEKPPGKTLVVGAGYIG 295
           ++  +L++ P    V+G G IG
Sbjct: 157 EEALALDRIPESLAVIGGGAIG 178

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score =  104 bits (261), Expect = 3e-25
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 20/195 (10%)

Query: 106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAA 165
           L+V+GGG  G  AA  AA +G+ V ++D      +     LGGTC+N GC+P K + ++A
Sbjct: 3   LVVIGGGPAGYVAAITAAQNGKNVTLID------EAD---LGGTCLNEGCMPTKSLLESA 53

Query: 166 LLGEAIKDAVAYGWEIPNVKSVQHNWANL----REAVQNHVKSVNWVTRVMLRDKKVDYL 221
            + + +K A  +G  +PN  S+  +W  +     + V   V+ + +    +++  K+  +
Sbjct: 54  EVHDKVKKANHFGITLPN-GSISIDWKQMQARKSQIVTQLVQGIQY----LMKKNKIKVI 108

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLE 280
                F   H V     + E + + AE  +IA G  P   P  P   +  I+S    SL 
Sbjct: 109 QGKASFETDHRVRVEYGDKE-EVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLP 167

Query: 281 KPPGKTLVVGAGYIG 295
             P   L+VG G IG
Sbjct: 168 SIPSSLLIVGGGVIG 182

Length = 458

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 57/213 (26%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YDL+++G GSG     +  A   +++ +++      +GT    GGTC+NVGCIP K+  
Sbjct: 1   HYDLIIIGTGSGNSILDERFA--DKRIAIVE------KGT---FGGTCLNVGCIPTKMFV 49

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW---VTRVMLR----- 214
            AA +   I++A   G                   V   +  V W   V+RV  R     
Sbjct: 50  YAADVARTIREAARLG-------------------VDAELDGVRWPDIVSRVFGRIDPIA 90

Query: 215 ----------DKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
                        +D      +FI       T++ G+ + +TA+ ++IA G RP  P + 
Sbjct: 91  AGGEEYRGRDTPNIDVYRGHARFIGPK----TLRTGDGEEITADQVVIAAGSRPVIPPVI 146

Query: 265 ---GAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
              G + H  +SD I  L + P   ++VG G+I
Sbjct: 147 ADSGVRYH--TSDTIMRLPELPESLVIVGGGFI 177

Length = 451

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 9/197 (4%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            +D++V+G G GG  AA  AA  G KV  ++    +P+G    LGGTC+NVGCIP K + 
Sbjct: 4   QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW-KNPKGKP-ALGGTCLNVGCIPSKALL 61

Query: 163 QAALLGEAIKDAVA-YGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
            ++   E      A +G  +  VK         ++ V   VK +      + +  K+  L
Sbjct: 62  ASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKV---VKKMTGGIEGLFKKNKITVL 118

Query: 222 NALGKFI--DQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFS 278
              G F+       E  +   ++  +TA++++IATG  P + P +P   +  + +    +
Sbjct: 119 KGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALN 178

Query: 279 LEKPPGKTLVVGAGYIG 295
             + P K  V+GAG IG
Sbjct: 179 FTEVPKKLAVIGAGVIG 195

Length = 475

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 89.8 bits (223), Expect = 4e-20
 Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 30/194 (15%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YDL+V+G G  G   A + A+ G+KV +++    S        GGTC+N+GCIP K +  
Sbjct: 4   YDLIVIGFGKAGKTLAAKLASAGKKVALVE---ESKAM----YGGTCINIGCIPTKTLLV 56

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           AA    + +  +A                  +  V + ++  N+    ML    VD  +A
Sbjct: 57  AAEKNLSFEQVMAT-----------------KNTVTSRLRGKNY---AMLAGSGVDLYDA 96

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE--HCISSDDIFSLEK 281
              F+    +E    + EK  LTAE I+I TG   N   IPG  +  H   S  I SLE 
Sbjct: 97  EAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLET 155

Query: 282 PPGKTLVVGAGYIG 295
            P +  ++G G IG
Sbjct: 156 LPERLGIIGGGNIG 169

Length = 438

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 88.8 bits (220), Expect = 9e-20
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 17/196 (8%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD++++GGG GG  AA  A   G KV  ++      + T   LGGTC+NVGC+P K +  
Sbjct: 4   YDVVIIGGGPGGYNAAIRAGQLGLKVACVE-----GRST---LGGTCLNVGCMPSKALLH 55

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR---VMLRDKKVDY 220
           A+ L EA     A G E  ++        NL + ++   +SV  +T+    + R  KVD+
Sbjct: 56  ASELYEA-----ASGGEFAHLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDW 110

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-YPDIPGAKEHCISSDDIFSL 279
           +   G+      V    ++G +  L A++I+IATG  P   P +    +  I S    SL
Sbjct: 111 IKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSL 170

Query: 280 EKPPGKTLVVGAGYIG 295
            + P   +V+GAG IG
Sbjct: 171 PEVPKHLVVIGAGVIG 186

Length = 466

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 87.7 bits (217), Expect = 2e-19
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 24/195 (12%)

Query: 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALL 167
           V+G G   +AAA +A   G +V +++      +GT   +GGTCVN+GC+P K+M +AA +
Sbjct: 11  VIGSGGSAMAAALKATERGARVTLIE------RGT---IGGTCVNIGCVPSKIMIRAAHI 61

Query: 168 GEAIKDAVAYGWEIP-----NVKSVQHNWANLREAVQNHVKSV--NWVTRVMLRDKKVDY 220
               +       E P     + ++   + + L    Q  V+ +  +    ++  +  +  
Sbjct: 62  AHLRR-------ESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITV 114

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG-AKEHCISSDDIFSL 279
           LN   +F+D+ ++  T+ +G ++T+  +   I TG RP  P +PG A+   ++S     L
Sbjct: 115 LNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALEL 174

Query: 280 EKPPGKTLVVGAGYI 294
           +  P + LV+GA  +
Sbjct: 175 DHIPERLLVIGASVV 189

Length = 468

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 86.2 bits (214), Expect = 7e-19
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 30/201 (14%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD--YVIPSPQGTTWGLGGTCVNVGCIPKK-L 160
           YD++VLG G GG  AA  AA  G K  V++  Y         WG  G C+NVGCIP K L
Sbjct: 5   YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY---------WG--GVCLNVGCIPSKAL 53

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           +  A L     K+A  +G            +   R+  +  VK V++    +++  K+  
Sbjct: 54  LRNAELAHIFTKEAKTFGISGEVTFDYGAAFDRSRKVAEGRVKGVHF----LMKKNKITE 109

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           ++  G F D +++E  + +G  +T+T +N +IATG       +PG       S+++ + E
Sbjct: 110 IHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL--LPGTS----LSENVVTYE 163

Query: 281 KP------PGKTLVVGAGYIG 295
           +       P   ++ GAG IG
Sbjct: 164 EQILSRELPKSIVIAGAGAIG 184

Length = 466

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 85.6 bits (212), Expect = 1e-18
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 55/213 (25%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YDL+++G GSG  +      A  R  IV        +GT    GGTC+NVGCIP K+  
Sbjct: 2   HYDLIIIGTGSGN-SIPDPRFADKRIAIV-------EKGT---FGGTCLNVGCIPTKMFV 50

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW---VTRVMLRDKKVD 219
            AA + ++I ++   G                   +   + SV W   V+RV     ++D
Sbjct: 51  YAAEVAQSIGESARLG-------------------IDAEIDSVRWPDIVSRVF--GDRID 89

Query: 220 YLNALGK------------FIDQHSV---EATMKNGEKKTLTAENILIATGGRPNYPDI- 263
            + A G+              D H+      T++ G+ + +T + I+IA G RP  P   
Sbjct: 90  PIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAI 149

Query: 264 --PGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
              G + H  +++DI  L + P   ++VG GYI
Sbjct: 150 ADSGVRYH--TNEDIMRLPELPESLVIVGGGYI 180

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 81.8 bits (202), Expect = 3e-17
 Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
           GLE AGFLN LGF+ TV +RS+PLRGFD+Q ++ + E M E G  FL   +P+++ K+ D
Sbjct: 194 GLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDD 253

Query: 82  GKLKVQYKN 90
            K+KV + +
Sbjct: 254 -KIKVLFSD 261

Length = 499

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 80.7 bits (199), Expect = 6e-17
 Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 4/88 (4%)

Query: 23  LECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG 82
           LECAGFL G+G + TVM+RS+ LRGFDQ  A  + E M E GV F  + +P+ V ++ + 
Sbjct: 193 LECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EA 251

Query: 83  KLKVQYKNVAEVRQDNTHKYDYDLLVLG 110
           K+ V++ +     ++   +YD  LL +G
Sbjct: 252 KVLVEFTDSTNGIEE---EYDTVLLAIG 276

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALL 167
           ++G GS   AAA +AA HG +V +++            +GG CVNVGC+P K++ +AA L
Sbjct: 21  IIGSGSAAFAAAIKAAEHGARVTIIE------GADV--IGGCCVNVGCVPSKILIRAAQL 72

Query: 168 GEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKF 227
               +     G E       +    + ++A    ++   +   ++  +  +  L    +F
Sbjct: 73  AHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKY-QSILDGNPALTLLKGYARF 131

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE--HCISSDDIFSLEKPPGK 285
            D +++   + +G ++ L A+  LIATG  P  P IPG  +  +  S++ +FS E P   
Sbjct: 132 KDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELP--A 189

Query: 286 TLVV 289
           +L V
Sbjct: 190 SLTV 193

Length = 479

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 65/215 (30%), Positives = 91/215 (42%), Gaps = 30/215 (13%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD+ ++G G GG AAA  A   G KVI+         G    +GGTCVNVGCIP K +  
Sbjct: 117 YDVGIIGCGVGGHAAAINAMERGLKVIIF-------TGDDDSIGGTCVNVGCIPSKALLY 169

Query: 164 AALLGEAIK------------DAVAYGWEIPNVK------SVQHNWANLREAVQNHVKSV 205
           A      +K            +A   G   P  +      +VQ +   L+E  Q+ +  +
Sbjct: 170 ATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKL 229

Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHS--VEATMKNGEK--KTLTAENILIATGGRPNYP 261
                  L+ KK    +   + I +    V+      EK  K    +NI+IATG  PN P
Sbjct: 230 RGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIP 289

Query: 262 D-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           D I   ++   +SD    LE       +VG G IG
Sbjct: 290 DNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIG 324

Length = 659

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 32/196 (16%)

Query: 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALL 167
           V+G G   +AAA +A   G +V +++      +GT   +GGTCVNVGC+P K+M +AA +
Sbjct: 103 VIGSGGAAMAAALKAVEQGARVTLIE------RGT---IGGTCVNVGCVPSKIMIRAAHI 153

Query: 168 GEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK---------- 217
               +++   G     V ++    + L    Q  V          LR  K          
Sbjct: 154 AHLRRESPFDGGIAATVPTIDR--SRLLAQQQARVDE--------LRHAKYEGILDGNPA 203

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE--HCISSDD 275
           +  L+   +F D  ++   + +G ++ +  +  LIATG  P  P IPG KE  +  S++ 
Sbjct: 204 ITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEA 263

Query: 276 IFSLEKPPGKTLVVGA 291
           + S   P  +  V+G+
Sbjct: 264 LVSDTIPE-RLAVIGS 278

Length = 561

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALL 167
           ++GGG GG  AA  AA  G  V V++           GLGG  V   C+P K +   A +
Sbjct: 6   IIGGGPGGYEAALVAAQLGADVTVIERD---------GLGGAAVLTDCVPSKTLIATAEV 56

Query: 168 GEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVK------SVNWVTRVMLRDKKVDYL 221
              ++ A   G    +    +    +L  AV   VK      S +   R  L  + V  +
Sbjct: 57  RTELRRAAELGIRFIDDGEAR---VDL-PAVNARVKALAAAQSAD--IRARLEREGVRVI 110

Query: 222 NALGKFID----QHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK---EHCISSD 274
              G+ ID     H V+ T  +G ++TL A+ +LIATG  P    +P A+   E  ++  
Sbjct: 111 AGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR--ILPTAEPDGERILTWR 168

Query: 275 DIFSLEKPPGKTLVVGAGYIG 295
            ++ L++ P   +VVG+G  G
Sbjct: 169 QLYDLDELPEHLIVVGSGVTG 189

Length = 466

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 49/204 (24%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP-KKLMH 162
           Y  +++G G  G   A   A  G +V +++      Q      GGTC+N+GCIP K L+H
Sbjct: 4   YQAVIIGFGKAGKTLAVTLAKAGWRVALIE------QSNAM-YGGTCINIGCIPTKTLVH 56

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK------ 216
            A    + ++                        A+Q   + VN+     LR+K      
Sbjct: 57  DAQQHTDFVR------------------------AIQRKNEVVNF-----LRNKNFHNLA 87

Query: 217 ---KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG--AKEHCI 271
               +D ++   +FI+ HS+      G  + +  E I I TG +   P IPG        
Sbjct: 88  DMPNIDVIDGQAEFINNHSLRVHRPEGNLE-IHGEKIFINTGAQTVVPPIPGITTTPGVY 146

Query: 272 SSDDIFSLEKPPGKTLVVGAGYIG 295
            S  + +L++ PG   ++G GYIG
Sbjct: 147 DSTGLLNLKELPGHLGILGGGYIG 170

Length = 441

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 22  GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E AG LNGLG    + +R   PLRGFD  + + + EEM + G+      +P +V K A
Sbjct: 179 AVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238

Query: 81  DGKLKVQYKN 90
           DG L +  ++
Sbjct: 239 DGSLTLTLED 248

Length = 450

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTK 78
            GLE A  L  LG   TV+ R    LRGFD+++AK++ E++ + G+  L       +  
Sbjct: 9  YIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEG 68

Query: 79 LADGKL 84
            DG +
Sbjct: 69 NGDGVV 74

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E AG   GLG   T++ R    LRGFD  M + +   + E G+  L +    S++K  
Sbjct: 178 AVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISKDD 237

Query: 81  DGKLKVQYKNVAEVRQD 97
           DG+LK       E+  D
Sbjct: 238 DGRLKATLSKHEEIVAD 254

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149
            +++D++V+GGG  GL AA EAA  G KV +L    P    T    GG 
Sbjct: 4   IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGI 52

Length = 562

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 94  VRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ--GTTWGLGGTCV 151
                    + D+LV+G G+ GL+AA  AA HG KVIV   V   P   GTT   GG   
Sbjct: 3   SAAAYPPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIV---VEKDPVFGGTTAWSGG--- 56

Query: 152 NVGCIPKKLMHQAALLGEAIKDAVAY 177
               IP+  + + A + E I+    Y
Sbjct: 57  -WMWIPRNPLARRAGIVEDIEQPRTY 81

Length = 581

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV 151
           D++V+G G  GLAAA EAA  G KV V++   P    T W  GG   
Sbjct: 1   DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDA 47

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E AG L+GLG    ++IR    LR FD  +++ I EE  + G++      P+ V K  
Sbjct: 178 AVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237

Query: 81  DGKLKVQYKNVAEV 94
           +GKL + +++   +
Sbjct: 238 EGKLVIHFEDGKSI 251

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 24/155 (15%)

Query: 23  LECAGFLNGLGFNATVMIRSVP-LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
           LE AG  NGL  +  V IR    LRGFD+++   + E+M+  G+ F  +  P ++ K AD
Sbjct: 265 LEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD 324

Query: 82  GKLKVQ--------YKNV--AEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIV 131
           G L ++        + +V  A  R+ NT         LG    G+   K  A      I 
Sbjct: 325 GSLSLKTNKGTVEGFSHVMFATGRKPNTKN-------LGLEEVGVKMDKNGA------IE 371

Query: 132 LDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
           +D    +   + W +G     +   P  LM   AL
Sbjct: 372 VDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGAL 406

Length = 558

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
           GLE A     LG   TV+ R    L G D +++K + +++ +GGV  L     ++  +  
Sbjct: 185 GLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILL-NTKVTAVEKK 243

Query: 81  DGKLKVQYKNVAEVRQDNTHKYDYDLLV 108
           D  + V  ++     +  T + D  +LV
Sbjct: 244 DDGVLVTLEDG----EGGTIEADA-VLV 266

Length = 454

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPK----KL 160
           LV+G G+ G+A A      G   VI++D      Q G  W      V +           
Sbjct: 1   LVVGAGAAGMAFADHLLDLGDAPVIIVD---RGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANL--REAVQNHVKSVNWVTRVMLRDKKV 218
           M     L            E+ +   +     +L  R  +   ++    VT V       
Sbjct: 58  MPDLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLP--IRLSTRVTAVE------ 109

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR--PNYPDIPGAKEHCISSDDI 276
                     D       + +GE  T+ A+ ++ ATG    P  P  PGA    +   D+
Sbjct: 110 ---------RDGGRFVVRLTDGE--TVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDV 158

Query: 277 FSLEKPPGKT-LVVGAGY 293
                  GKT  V+G G+
Sbjct: 159 LERIDLKGKTVAVIGGGH 176

Length = 202

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLG 147
             +  + YD++V+G G+GGL+AA  AA  G KV+V++        T W  G
Sbjct: 2   TPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGG 52

Length = 572

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
             D D++V+G G  GL AA E A  G++V++LD
Sbjct: 2   AMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34

Length = 549

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 20  DSGLECAGFLNGLGFNATVMIRSV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTK 78
             GLE A  L  LG   TV+ R    L   D +++  + E++ +  +          V  
Sbjct: 152 YIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGVT-------VLL 204

Query: 79  LADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
           +    +KV    V EV+  +  + D D++++  G
Sbjct: 205 VVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIG 238

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149
           D++V+GGG  G+AAA  AA  G KV++++            LGG 
Sbjct: 1   DVVVVGGGPAGVAAAIAAARLGAKVLLVE---RRGW-----LGGM 37

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 94  VRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ 140
            R D +     DL+V+GGG  GLA A++ +  G  V  +D   PSP 
Sbjct: 19  PRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCID---PSPL 62

Length = 447

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           YD++V+GGG+ GL AA  AA  GR+V+++D
Sbjct: 1   YDVIVIGGGAAGLMAAISAAKRGRRVLLID 30

Length = 405

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 47/173 (27%), Positives = 67/173 (38%), Gaps = 63/173 (36%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
            D+LV+G G+GGL+AA  A   G  V+VL+     P       GGT              
Sbjct: 10  CDVLVIGSGAGGLSAAITARKLGLDVVVLE---KEPV-----FGGTT------------- 48

Query: 164 AALLGEAIKDAVAYGWE-IP-NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
                     A + G   IP N  + +   A+ REA + ++K                  
Sbjct: 49  ----------AFSGGVLWIPGNPHAREAGVADSREAARTYLK------------------ 80

Query: 222 NALGKFIDQHSVEATMKNG-------EKKTLTAENILIATGGRPNY-PDIPGA 266
           +  G F D  +VEA + NG       E++T   E   + T   P+Y PD PG 
Sbjct: 81  HETGAFFDAAAVEAFLDNGPEMVEFFERET---EVKFVPT-LYPDYHPDAPGG 129

Length = 574

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK----- 158
            D++++GGG  GL+AA   A  G  V VL+    +  G      G  +     P      
Sbjct: 5   MDVVIIGGGIVGLSAAYYLAERGADVTVLE-AGEAGGGAAGRNAGGILAPWASPGGELEV 63

Query: 159 -KLMHQAALLGEAIKDAVAYGWEI 181
             L   +  L   + + +  G  +
Sbjct: 64  RPLADLSLALWRELSEELGTGAGL 87

Length = 387

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           D+LV+G G  GLAAA  AA  G +VI++D
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVD 193

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGGTCVNVG 154
           YD +V+G G GGL  A + A  G KV+VL+ Y+IP      +   G   +VG
Sbjct: 1   YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVG 52

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 58/199 (29%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YD++++GGG  GL AA  AA  G KV+++                     G    +L  
Sbjct: 3   IYDVIIIGGGPAGLTAAIYAARAGLKVVLIL--------------EGGEPGG----QLTK 44

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHN--WANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
                            ++ N            L E ++   +    V  V    +KV+ 
Sbjct: 45  TT---------------DVENYPGFPGGILGPELMEQMKEQAEKFG-VEIVEDEVEKVE- 87

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-------HCISS 273
                       V+      +K T  A+ ++IATG       +PG +E       +C + 
Sbjct: 88  -----LEGGPFKVK-----TDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATC 137

Query: 274 DDIFSLEKPPGKTLVVGAG 292
           D  F         +V+G G
Sbjct: 138 DGFF----KGKDVVVIGGG 152

Length = 305

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
           D++V+GGG  GL+ A E A  G  V +L+   + S  G +    G
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS--GASGRNAG 43

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           +D++++GGG  GL AA  AA  GR+V+++D
Sbjct: 4   FDVIIIGGGPAGLMAAISAAKAGRRVLLID 33

Length = 408

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
               D++V+G G  GL AA E A  G++V++LD
Sbjct: 3   GLTADVIVVGAGLAGLVAAAELADAGKRVLILD 35

Length = 552

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 52/176 (29%)

Query: 106 LLVLGGGSGGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA 164
           +++LGGG GGL+AAK  A     V I L  V        +               L+++ 
Sbjct: 6   IVILGGGFGGLSAAKRLARKLPDVEITL--VDRRDY-HLF-------------TPLLYEV 49

Query: 165 ALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL 224
           A  G   +  +A    +  +     N       VQ  V  ++                  
Sbjct: 50  AT-GTLSESEIAI--PLRALLRKSGN-VQF---VQGEVTDID------------------ 84

Query: 225 GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
               D   V  T+ +  +  ++ + +++A G   NY  IPGA E+      + +LE
Sbjct: 85  ---RDAKKV--TLADLGE--ISYDYLVVALGSETNYFGIPGAAEYAFG---LKTLE 130

Length = 405

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 54/190 (28%)

Query: 83  KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGT 142
           KL+      A           YD+LV+GGG  G AAA  AA  G +  ++          
Sbjct: 194 KLEETAGVEAA--SALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMV---------- 241

Query: 143 TWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQH-NWANLREAVQNH 201
                                A  +G  +KD V     I N+ SV +   + L   ++ H
Sbjct: 242 ---------------------AERIGGQVKDTVG----IENLISVPYTTGSQLAANLEEH 276

Query: 202 VKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHS--VEATMKNGEKKTLTAENILIATGGRP 258
           +K              +D +     K I+     +  T+++GE   L A+++++ATG R 
Sbjct: 277 IKQYP-----------IDLMENQRAKKIETEDGLIVVTLESGE--VLKAKSVIVATGARW 323

Query: 259 NYPDIPGAKE 268
               +PG KE
Sbjct: 324 RKLGVPGEKE 333

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            YDYD++++GG   G   AK  +  GRKV++L+
Sbjct: 31  NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLE 63

Length = 567

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 39/204 (19%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQ-GTTWGLG---GTCVNVGCIP 157
             D+ ++G G  GLAAA      G    ++ +        G TW      G  ++    P
Sbjct: 8   HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE---KRDDVGGTWRYNRYPGLRLD---SP 61

Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           K L+     L     +A A   EI +          LR  ++      N    V   D+ 
Sbjct: 62  KWLLGFPF-LPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIR-----FNTRVEVADWDE- 114

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG--GRPNYPDIPGAKE------H 269
                      D      T  +G    LTA+ +++ATG    P  PD  G  E      H
Sbjct: 115 -----------DTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163

Query: 270 CISSDDIFSLEKPPGKTLVVGAGY 293
             S+D     +    + LV+GAG 
Sbjct: 164 --SADWPNPEDLRGKRVLVIGAGA 185

Length = 443

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTT 143
           YDL+++G G  GLA A  AA  G  V V++      QG +
Sbjct: 1   YDLIIVGAGILGLAHAYAAARRGLSVTVIERS-SRAQGAS 39

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           + D++V+G G+ G  AA EAAA G +V+VL+
Sbjct: 20  EADVVVVGFGAAGACAAIEAAAAGARVLVLE 50

Length = 492

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
             +YD++++G G  G +AA+  A  G  V+VL+
Sbjct: 1   MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLE 33

Length = 396

>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
             D+LV+GGG+  L AA  A   G  V++L+
Sbjct: 4   MVDVLVIGGGNAALCAALAAREAGASVLLLE 34

Length = 466

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            +  K +YD +++G GS G   A   +  G  V+VL+
Sbjct: 1   MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE 37

Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG4716|consensus	503		99.96
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.92
PLN02507	499	glutathione reductase	99.91
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.91
PLN02546	558	glutathione reductase	99.91
KOG0405|consensus	478		99.9
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.9
PTZ00058	561	glutathione reductase; Provisional	99.9
PTZ00052	499	thioredoxin reductase; Provisional	99.9
PRK06370	463	mercuric reductase; Validated	99.9
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.9
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.89
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.89
PRK14694	468	putative mercuric reductase; Provisional	99.89
PRK06116	450	glutathione reductase; Validated	99.89
PRK14727	479	putative mercuric reductase; Provisional	99.88
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.88
PRK07846	451	mycothione reductase; Reviewed	99.88
PRK13748	561	putative mercuric reductase; Provisional	99.87
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.87
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.87
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.87
TIGR02053	463	MerA mercuric reductase. This model represents the	99.86
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.86
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.86
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.85
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.85
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.85
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.84
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.83
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.83
KOG1335|consensus	506		99.82
KOG1335|consensus	506		99.81
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.75
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.74
KOG0405|consensus	478		99.73
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.72
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.71
KOG1399|consensus	448		99.71
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.7
KOG4716|consensus	503		99.66
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.65
PRK10262	321	thioredoxin reductase; Provisional	99.65
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.64
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.63
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.62
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.62
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.61
PLN02546	558	glutathione reductase	99.61
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.6
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.6
PTZ00058	561	glutathione reductase; Provisional	99.59
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.59
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.59
PLN02507	499	glutathione reductase	99.59
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.58
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.57
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.57
PRK14727	479	putative mercuric reductase; Provisional	99.57
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.56
PRK07846	451	mycothione reductase; Reviewed	99.54
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.53
PRK14694	468	putative mercuric reductase; Provisional	99.53
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.53
PRK06370	463	mercuric reductase; Validated	99.53
PRK06116	450	glutathione reductase; Validated	99.53
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.53
PRK13748	561	putative mercuric reductase; Provisional	99.53
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.53
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.52
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.52
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.5
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.5
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.5
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.49
TIGR02053	463	MerA mercuric reductase. This model represents the	99.48
PTZ00052	499	thioredoxin reductase; Provisional	99.48
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.48
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.47
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.47
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.47
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.46
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.45
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.45
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.45
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.43
PRK12831	464	putative oxidoreductase; Provisional	99.41
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.41
KOG0404|consensus	322		99.4
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.4
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.4
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.39
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.39
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.39
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.39
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.38
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.37
KOG2495|consensus	491		99.36
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.36
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.36
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.34
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.32
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.31
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.31
PRK10262	321	thioredoxin reductase; Provisional	99.3
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.28
KOG1336|consensus	478		99.25
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.24
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.24
KOG1336|consensus	478		99.24
COG2081	408	Predicted flavoproteins [General function predicti	99.23
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.23
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.23
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.22
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.22
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.2
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.17
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.16
PLN02852	491	ferredoxin-NADP+ reductase	99.15
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.15
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.12
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.1
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.06
PRK12831	464	putative oxidoreductase; Provisional	99.05
PRK13984	604	putative oxidoreductase; Provisional	99.05
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.04
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.04
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.02
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.02
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.01
PRK09897	534	hypothetical protein; Provisional	99.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.89
KOG2495|consensus	491		98.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.86
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.86
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.82
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.82
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.78
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.77
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.77
KOG0404|consensus	322		98.76
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.75
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.7
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.68
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.66
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.66
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.65
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.59
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.59
PRK13984	604	putative oxidoreductase; Provisional	98.57
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.57
PLN02463	447	lycopene beta cyclase	98.56
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.55
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.54
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.53
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.51
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.47
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.46
KOG0399|consensus	2142		98.46
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.44
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.43
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.43
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.4
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.37
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.34
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.34
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.34
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.34
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.34
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.33
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.32
PRK07804	541	L-aspartate oxidase; Provisional	98.32
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.31
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.31
KOG1346|consensus	659		98.31
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.3
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.3
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.29
PLN02815	594	L-aspartate oxidase	98.28
PRK08401	466	L-aspartate oxidase; Provisional	98.26
PRK08275	554	putative oxidoreductase; Provisional	98.26
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.22
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.21
PRK10157	428	putative oxidoreductase FixC; Provisional	98.2
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.2
PRK10015	429	oxidoreductase; Provisional	98.2
PLN02697	529	lycopene epsilon cyclase	98.19
PTZ00188	506	adrenodoxin reductase; Provisional	98.19
PRK08274	466	tricarballylate dehydrogenase; Validated	98.19
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.19
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.18
KOG2755|consensus	334		98.18
PRK06175	433	L-aspartate oxidase; Provisional	98.18
PRK08071	510	L-aspartate oxidase; Provisional	98.17
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.16
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.16
PRK06834	488	hypothetical protein; Provisional	98.15
PRK06847	375	hypothetical protein; Provisional	98.14
KOG1800|consensus	468		98.13
PRK11445	351	putative oxidoreductase; Provisional	98.12
PRK09077	536	L-aspartate oxidase; Provisional	98.11
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.09
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.09
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.07
PRK07512	513	L-aspartate oxidase; Provisional	98.07
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.07
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.06
PRK07190	487	hypothetical protein; Provisional	98.04
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.03
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.03
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.02
PRK07121	492	hypothetical protein; Validated	98.02
KOG0399|consensus	2142		98.02
PRK07395	553	L-aspartate oxidase; Provisional	98.01
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.0
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.99
PRK06184	502	hypothetical protein; Provisional	97.99
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.98
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.98
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.96
PRK08244	493	hypothetical protein; Provisional	97.94
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.93
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.92
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.91
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.88
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.88
PRK06126	545	hypothetical protein; Provisional	97.88
PRK09126	392	hypothetical protein; Provisional	97.88
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.87
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.87
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.87
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.82
PLN02661	357	Putative thiazole synthesis	97.81
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.81
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.8
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.79
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.78
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.78
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.77
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.77
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.74
PLN02852	491	ferredoxin-NADP+ reductase	97.74
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.74
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.72
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.71
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.71
PRK08013	400	oxidoreductase; Provisional	97.71
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.7
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.67
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.67
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.67
PRK12839	572	hypothetical protein; Provisional	97.66
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.66
PRK08163	396	salicylate hydroxylase; Provisional	97.65
PRK07588	391	hypothetical protein; Provisional	97.63
PLN02985	514	squalene monooxygenase	97.61
PRK06753	373	hypothetical protein; Provisional	97.61
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.61
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.58
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.58
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.57
PRK07045	388	putative monooxygenase; Reviewed	97.54
PRK06185	407	hypothetical protein; Provisional	97.53
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.53
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.52
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.52
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.52
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.5
KOG2820|consensus	399		97.5
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.49
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.48
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.47
PTZ00367	567	squalene epoxidase; Provisional	97.46
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.45
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.4
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.38
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.37
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.37
COG2081	408	Predicted flavoproteins [General function predicti	97.35
PRK07236	386	hypothetical protein; Provisional	97.33
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.3
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.29
PRK08294	634	phenol 2-monooxygenase; Provisional	97.24
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.23
PRK05868	372	hypothetical protein; Validated	97.2
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.2
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.19
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.16
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.16
KOG2311|consensus	679		97.16
PRK06475	400	salicylate hydroxylase; Provisional	97.06
PRK06996	398	hypothetical protein; Provisional	97.01
KOG1346|consensus	659		97.01
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.97
COG0579	429	Predicted dehydrogenase [General function predicti	96.92
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.9
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.9
KOG2404|consensus	477		96.89
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.88
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.84
KOG1298|consensus	509		96.77
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.76
KOG3851|consensus	446		96.74
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.68
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	96.61
PRK06847	375	hypothetical protein; Provisional	96.59
KOG2853|consensus	509		96.35
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.34
KOG2614|consensus	420		96.33
PRK07236	386	hypothetical protein; Provisional	96.14
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.13
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	96.08
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.0
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	95.99
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.99
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	95.9
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.83
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.78
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	95.77
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	95.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.76
PRK12842	574	putative succinate dehydrogenase; Reviewed	95.75
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.37
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.35
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.29
PRK08163	396	salicylate hydroxylase; Provisional	95.21
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.18
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.12
KOG0029|consensus	501		95.04
PRK06834	488	hypothetical protein; Provisional	95.04
PLN02463	447	lycopene beta cyclase	94.94
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	94.94
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.9
COG0579	429	Predicted dehydrogenase [General function predicti	94.83
PRK07588	391	hypothetical protein; Provisional	94.82
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.82
KOG2415|consensus	621		94.8
PLN02576	496	protoporphyrinogen oxidase	94.74
KOG2852|consensus	380		94.72
PRK08244	493	hypothetical protein; Provisional	94.69
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.56
PRK02106	560	choline dehydrogenase; Validated	94.55
COG3573	552	Predicted oxidoreductase [General function predict	94.49
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.48
PRK07233	434	hypothetical protein; Provisional	94.47
PRK07538	413	hypothetical protein; Provisional	94.4
PRK06184	502	hypothetical protein; Provisional	94.39
PRK07208	479	hypothetical protein; Provisional	94.31
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.27
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	94.1
PLN02268	435	probable polyamine oxidase	94.07
KOG2844|consensus	856		94.06
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.04
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.01
PRK11883	451	protoporphyrinogen oxidase; Reviewed	93.91
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	93.89
PRK05868	372	hypothetical protein; Validated	93.88
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	93.81
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	93.7
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	93.66
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.51
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	93.47
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.45
PLN02697	529	lycopene epsilon cyclase	93.4
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	93.38
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.37
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	93.32
PRK10157	428	putative oxidoreductase FixC; Provisional	93.14
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	93.1
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	92.98
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	92.9
PRK06753	373	hypothetical protein; Provisional	92.85
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	92.77
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	92.74
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.71
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	92.69
PTZ00188	506	adrenodoxin reductase; Provisional	92.68
PLN02568	539	polyamine oxidase	92.64
PRK07045	388	putative monooxygenase; Reviewed	92.58
PRK06475	400	salicylate hydroxylase; Provisional	92.54
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.36
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.35
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.31
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.2
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	92.2
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	92.18
PLN02464	627	glycerol-3-phosphate dehydrogenase	92.13
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.1
PLN02676	487	polyamine oxidase	92.05
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.01
PRK05257	494	malate:quinone oxidoreductase; Validated	92.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	91.83
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	91.82
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	91.81
KOG0685|consensus	498		91.79
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	91.65
PRK13977	576	myosin-cross-reactive antigen; Provisional	91.65
PLN02328	808	lysine-specific histone demethylase 1 homolog	91.59
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	91.48
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	91.26
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	91.22
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.93
PTZ00383	497	malate:quinone oxidoreductase; Provisional	90.88
PLN02529	738	lysine-specific histone demethylase 1	90.68
PRK12416	463	protoporphyrinogen oxidase; Provisional	90.63
PRK08132	547	FAD-dependent oxidoreductase; Provisional	90.62
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	90.58
KOG1399|consensus	448		90.46
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	90.19
PLN02661	357	Putative thiazole synthesis	90.18
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	90.14
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	90.0
PLN02785	587	Protein HOTHEAD	89.98
PRK07538	413	hypothetical protein; Provisional	89.78
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.76
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	89.59
PRK05257	494	malate:quinone oxidoreductase; Validated	89.42
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	89.25
COG3349	485	Uncharacterized conserved protein [Function unknow	89.22
KOG0042|consensus	680		89.16
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	88.85
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	88.78
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	88.54
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	88.45
PRK11728	393	hydroxyglutarate oxidase; Provisional	88.33
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.19
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	88.06
PRK13339	497	malate:quinone oxidoreductase; Reviewed	88.04
KOG3851|consensus	446		87.88
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	87.5
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	87.34
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	87.1
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	87.1
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.03
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	86.67
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	86.62
PRK13977	576	myosin-cross-reactive antigen; Provisional	86.49
PLN02612	567	phytoene desaturase	86.47
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	86.41
PLN03000	881	amine oxidase	85.95
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	85.09
PLN02612	567	phytoene desaturase	85.04
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	85.0
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	84.95
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	84.68
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	84.39
KOG1238|consensus	623		84.37
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	84.19
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	83.69
KOG4254|consensus	561		83.6
PLN02487	569	zeta-carotene desaturase	83.6
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	83.48
PRK11445	351	putative oxidoreductase; Provisional	83.41
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	83.09
KOG2403|consensus	642		83.06
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	83.01
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	82.97
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	82.93
PRK07233	434	hypothetical protein; Provisional	81.82
PRK09126	392	hypothetical protein; Provisional	81.72
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	81.37
PRK07190	487	hypothetical protein; Provisional	81.34
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	81.03
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	80.97
PLN02976	1713	amine oxidase	80.77
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	80.62
PLN02529	738	lysine-specific histone demethylase 1	80.4
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	80.24
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	80.2
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	80.11
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	80.07
PRK06996	398	hypothetical protein; Provisional	80.04

>KOG4716|consensus

Probab=99.96  E-value=2.7e-28  Score=206.49  Aligned_cols=211  Identities=62%  Similarity=1.030  Sum_probs=199.6

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...++|++|||+|..||++|..+...|.++.++|.-.++..+.-|.+|+.|.+.+|+|.+++|.+...+..+.+...|||
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW   95 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW   95 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            46789999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      +..+. ..++||+.+...++.+...+.|...-+++...|+++++...+.+++.+..+...|+.+.++|+.+|||||.+|+
T Consensus        96 ~~~e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr  174 (503)
T KOG4716|consen   96 NVDEQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR  174 (503)
T ss_pred             CCccc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence            87652 58899999999999999999999888899999999999999999999999998888889999999999999999


Q ss_pred             CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|.+||..++++++++.+.+...|++-+|||+|+.|.|+|-.|...+.+||+
T Consensus       175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtV  226 (503)
T KOG4716|consen  175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTV  226 (503)
T ss_pred             CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEE
Confidence            9999999999999999999999999999999999999999999998888875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.93  E-value=1.8e-24  Score=202.16  Aligned_cols=207  Identities=61%  Similarity=1.029  Sum_probs=172.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|+||||+|++|+.+|..+.+.|.++.++|+..++.....+..|+.|.+.+|.|++....+............+++...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            68999999999999999999999999999997544444444568999999999999988887776666555555665432


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                      .  ...+||..+..+.......+.......++..+|+++.+...+.++..+.++..+|+...+.||+||+|||+.|+.|+
T Consensus        82 ~--~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~  159 (484)
T TIGR01438        82 E--TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG  159 (484)
T ss_pred             C--CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence            1  14679999999888887777666677788899999999999999888888776665568999999999999999999


Q ss_pred             CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +||......+++++..+...+++++|||||++|+|.|..+...+.+||+
T Consensus       160 ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  208 (484)
T TIGR01438       160 IPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV  208 (484)
T ss_pred             CCCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence            9998666677888887777889999999999999999999988888886

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.92  E-value=2.9e-23  Score=189.76  Aligned_cols=198  Identities=35%  Similarity=0.524  Sum_probs=170.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH-HcCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV-AYGW  179 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~  179 (312)
                      ..+||+||||+||+|..+|..+.+.|.++.++|+..        ..|+.|.+.+|.|++....+......+.... .+|.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~--------~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi   73 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE--------RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGI   73 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC--------CcCceEEeeCccccHHHHHHHHHHHHHhhcccccce
Confidence            357999999999999999999999999988899752        2788999999999999988888777666554 4665


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ....   ..+||..+..+...............++..+|+++.++..+.++..+.+...  +.+++.++++|||||+.|.
T Consensus        74 ~~~~---~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~  148 (454)
T COG1249          74 SAEV---PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPR  148 (454)
T ss_pred             ecCC---CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCc
Confidence            5443   2689999999999877777778888888889999999999999888888776  3489999999999999999


Q ss_pred             CCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|++++.+.. .+++++.+.+...|++++|||||.+|+|.+..++..+.+|||
T Consensus       149 ~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTi  201 (454)
T COG1249         149 IPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTV  201 (454)
T ss_pred             CCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            9999998664 677878676669999999999999999999999999999997

>PLN02507 glutathione reductase

Probab=99.91  E-value=9.7e-23  Score=191.15  Aligned_cols=208  Identities=37%  Similarity=0.634  Sum_probs=168.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC-CCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI-PSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~-~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..+||++|||+||+|+.+|..+.+.|.++.++|+.. ..+.......|+.|.+.+|.|++....+......+.....+++
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            457999999999999999999999999999999532 1122222347889999999999988777766666666666776


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ....  ...+||..+........+.+.......+...+|+++.+.+.+++...+.+++.+|+...+.||+||+|||+.|.
T Consensus       103 ~~~~--~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        103 EINE--KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             ccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence            5432  34689999888877777777666667778889999999988889999999988886567999999999999999


Q ss_pred             CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|++||.+. .+++++...+...+++++|||+|.+|+|.|..+...+.+|+|
T Consensus       181 ~p~ipG~~~-~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  231 (499)
T PLN02507        181 RPNIPGKEL-AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDL  231 (499)
T ss_pred             CCCCCCccc-eechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            999999743 356677777777789999999999999999999988889887

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.91  E-value=1.9e-22  Score=188.33  Aligned_cols=199  Identities=30%  Similarity=0.434  Sum_probs=161.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+||+|+.+|..+.+.|.++.++|+..        ..|+.|.+.+|.|++....+......+.....+++.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~--------~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~   74 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS--------TLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF   74 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--------cccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc
Confidence            46899999999999999999999999999999642        2688899999999988776666555555555566543


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC-
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY-  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~-  260 (312)
                      .   ...+||..+..+.....+.+.......++..+|+++.++..+.+...+.+...+|+..++.||+||+|||+.|+. 
T Consensus        75 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~  151 (471)
T PRK06467         75 G---EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQL  151 (471)
T ss_pred             C---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCC
Confidence            2   246789998888877766665556667788899999999888888888888777755689999999999999975 


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.+++.....+++.+...+...+++++|||+|.+|+|.|..+...+.+|||
T Consensus       152 p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtl  202 (471)
T PRK06467        152 PFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDV  202 (471)
T ss_pred             CCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            546665445677777777777889999999999999999999988889887

>PLN02546 glutathione reductase

Probab=99.91  E-value=1.6e-22  Score=190.85  Aligned_cols=203  Identities=35%  Similarity=0.644  Sum_probs=167.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC-CCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..+||++|||+|++|+.+|..+.+.|.++.++|+...+ ..+.....|+.|.+.+|.|++....+......+.....+++
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~  156 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW  156 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence            56799999999999999999999999999999964322 22223457999999999999999888777777776666776


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ....  ...+||..+..+.....+.+...+...++..+|+++.+....++...+.+   +|  ..+.||+||+|||+.|.
T Consensus       157 ~~~~--~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~  229 (558)
T PLN02546        157 KYET--EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPF  229 (558)
T ss_pred             ccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCC
Confidence            5321  24689999999988888877777777888899999999888888776655   56  57999999999999999


Q ss_pred             CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|++||.+ ..++++++......+++|+|||||.+|+|.|..+...+.+|+|
T Consensus       230 ~P~IpG~~-~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl  280 (558)
T PLN02546        230 IPDIPGIE-HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV  280 (558)
T ss_pred             CCCCCChh-hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            99999974 4567777777777789999999999999999999888888886

>KOG0405|consensus

Probab=99.90  E-value=3.8e-23  Score=175.92  Aligned_cols=200  Identities=41%  Similarity=0.674  Sum_probs=180.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..++|.++||+|..|+..|......|.++.++|..        |..|+.|...+|.|.+...++......+.+...|||.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~--------f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~   89 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP--------FGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFP   89 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC--------CCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCc
Confidence            45899999999999999999999999999888863        4799999999999999999999999999998889987


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ...  ...+||..+.+....+...+.-..+..+.+..|+++.++..+.++..+.++..||.+..|++++++||||+.|.+
T Consensus        90 ~~~--~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~  167 (478)
T KOG0405|consen   90 INE--EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII  167 (478)
T ss_pred             ccc--ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence            654  578999999998888888888778888999999999999999999999999999866679999999999999999


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.+||. ++.++++.++.+...|+|++|||+|++|+|.|--+...+.+++|
T Consensus       168 PnIpG~-E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethl  217 (478)
T KOG0405|consen  168 PNIPGA-ELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHL  217 (478)
T ss_pred             CCCCch-hhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEE
Confidence            999999 58899999999999999999999999999988888877777765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.90  E-value=3e-22  Score=186.03  Aligned_cols=193  Identities=36%  Similarity=0.662  Sum_probs=159.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +||++|||+||+|+.+|..+.+.|.+++++|+.         ..|+.|.+.+|.|++....+......+.....+++...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP---------RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC---------ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence            689999999999999999999999999999963         27888999999999988877777666666666765432


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                         ...++|..+..+.......+...+...+...+|+++.+....++...+.+. .+|  ..+.||+||+|||+.|..|+
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~~p~  146 (446)
T TIGR01424        73 ---KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQKPN  146 (446)
T ss_pred             ---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCCCCC
Confidence               246899999988877777776677778888999999988877777777665 355  57999999999999999999


Q ss_pred             CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +||.+ ...++.+...+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       147 i~G~~-~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl  194 (446)
T TIGR01424       147 LPGHE-LGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTL  194 (446)
T ss_pred             CCCcc-ceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            99874 3456666666667789999999999999999998888888886

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=99.90  E-value=2.4e-22  Score=189.59  Aligned_cols=194  Identities=35%  Similarity=0.628  Sum_probs=160.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..++|++|||+|++|+.+|..+.+.|.++.++|+.         ..|+.|.+++|.|++....+......+.....+|..
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~---------~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~  116 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD---------YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD  116 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc---------cccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999963         388999999999999888777766666666666654


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEE------------------------
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEAT------------------------  236 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~------------------------  236 (312)
                      .    ...+||..+..+.......+.......++..+|+++.++..+.++..+.++                        
T Consensus       117 ~----~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~  192 (561)
T PTZ00058        117 T----QFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGV  192 (561)
T ss_pred             c----cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccc
Confidence            2    135789998888887777766666677788899999999888777766531                        


Q ss_pred             --ecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        237 --MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       237 --~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                        ..+|  .++.||+||+|||+.|..|+++|.+ +.++++++..+.. +++|+|||+|.+|+|.|..+...+.+||+
T Consensus       193 ~~~~~g--~~i~ad~lVIATGS~P~~P~IpG~~-~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl  265 (561)
T PTZ00058        193 SQLDDG--QVIEGKNILIAVGNKPIFPDVKGKE-FTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYI  265 (561)
T ss_pred             eecCCC--cEEECCEEEEecCCCCCCCCCCCce-eEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence              2355  5799999999999999999999975 5667777766655 88999999999999999999988889986

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.90  E-value=5.9e-22  Score=186.01  Aligned_cols=205  Identities=57%  Similarity=0.946  Sum_probs=162.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  180 (312)
                      +.+|++|||+||+|+.+|..+.+.|.+++++|+..+.+....|..|+.|.+.+|.|++....+......+.. ...|++.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~   83 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK   83 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence            468999999999999999999999999999997443333333557999999999999877666555554432 2335543


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..   . .++|..+.++.....+.+.......+...+|+++.+...+.+.+.+.+... ++...+.||+||+|||+.|..
T Consensus        84 ~~---~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~  158 (499)
T PTZ00052         84 TS---S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSI  158 (499)
T ss_pred             CC---C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCC
Confidence            21   2 689999999999888877666666677789999999888777777777643 223679999999999999998


Q ss_pred             CC-CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PD-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~-~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+ +||...+..++.++..+...+++++|||+|.+|+|.|..|...+.+||+
T Consensus       159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  210 (499)
T PTZ00052        159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTV  210 (499)
T ss_pred             CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            85 9998766777778877777788999999999999999999988889987

>PRK06370 mercuric reductase; Validated

Probab=99.90  E-value=9.7e-22  Score=183.62  Aligned_cols=194  Identities=31%  Similarity=0.497  Sum_probs=156.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+||+|+.+|..+.+.|.++.++|+.         ..|+.|.+.+|.|++....+......+.....+++..
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   74 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG---------LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSV   74 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC---------ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            4689999999999999999999999999999963         2677899999999998887777766666666666542


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..  ...+||..+..+.....+.+.......++.. +|+++.++....+...+.+   +|  .++.||+||+|||+.|+.
T Consensus        75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~  147 (463)
T PRK06370         75 GG--PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAI  147 (463)
T ss_pred             Cc--cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCC
Confidence            21  2367899988888777766555566677776 9999988876666666655   45  578999999999999999


Q ss_pred             CCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+.. .+++.++......+++|+|||+|++|+|.|..+...+.+|++
T Consensus       148 p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl  199 (463)
T PRK06370        148 PPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTV  199 (463)
T ss_pred             CCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            999998653 456666666667789999999999999999999888888886

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.90  E-value=8.1e-22  Score=183.11  Aligned_cols=192  Identities=42%  Similarity=0.704  Sum_probs=155.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+||+|+.+|..+.+.|.++.++|+.         ..|+.|.+.+|.|++....+......+.....++....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK---------KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN   72 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc---------ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC
Confidence            589999999999999999999999999999963         27888999999999987777666666666555665422


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC-
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p-  261 (312)
                      .  ...++|..+..+.....+.+...+...+...+|+++.++....+...+.+   +|  ..+.||+||+|||+.|..| 
T Consensus        73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~  145 (450)
T TIGR01421        73 L--ENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPE  145 (450)
T ss_pred             C--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCC
Confidence            1  12478888888877777766666667788889999998876666665544   45  5799999999999999998 


Q ss_pred             CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+ ...+++++..+...+++++|||||.+|+|.|..+...+.+|||
T Consensus       146 ~i~g~~-~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl  194 (450)
T TIGR01421       146 NIPGAE-LGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHL  194 (450)
T ss_pred             CCCCCc-eeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            899874 3456777777777889999999999999999999988888886

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.89  E-value=1e-21  Score=183.28  Aligned_cols=208  Identities=37%  Similarity=0.609  Sum_probs=160.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .+||++|||+|++|+.+|..+.+. |.++.++|+......+.-...|+.|.+.+|.|++....+......+.....+++.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            468999999999999999999996 8899999964222222112489999999999999988887777766665556653


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEeeCCeEEEEecC---C-CeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFIDQHSVEATMKN---G-EKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~---G-~~~~i~ad~vVlAtG  255 (312)
                      .. .....+||..+..+.......+.......++. .+|+++.+...+.++..+.+....   + +.+++.||+||+|||
T Consensus        82 ~~-~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG  160 (486)
T TIGR01423        82 FD-RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG  160 (486)
T ss_pred             cc-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence            21 11346799999988888877776666666766 599999999988898888886421   1 136899999999999


Q ss_pred             CCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhc---Cceeeee
Q psy11185        256 GRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNS---GCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~---~~~~V~~  311 (312)
                      +.|..|++||.+. .+++.+++.+...+++++|||||.+|+|.|..+..   .+.+|||
T Consensus       161 s~p~~p~i~G~~~-~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl  218 (486)
T TIGR01423       161 SWPQMLGIPGIEH-CISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL  218 (486)
T ss_pred             CCCCCCCCCChhh-eechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence            9999999999753 46666777676778999999999999998875543   3668876

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.89  E-value=1.8e-21  Score=182.23  Aligned_cols=198  Identities=31%  Similarity=0.485  Sum_probs=157.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+||+|+.+|..+.+.|.++.++|+.         ..|+.|...+|.|++....+......+.....++...
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   73 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG---------KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV   73 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc---------CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence            3689999999999999999999999999999963         2688899999999998777666555555555555432


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC-------eEEEEecCCCeEEEEcCeEEEcc
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH-------SVEATMKNGEKKTLTAENILIAT  254 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~-------~~~v~~~~G~~~~i~ad~vVlAt  254 (312)
                      .   ...++|..+..+.....+.+.......++..+|+++.+.+..++..       .+.+.+.+|+..++.||+||+||
T Consensus        74 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViAT  150 (472)
T PRK05976         74 S---GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIAT  150 (472)
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeC
Confidence            2   2357888888887777766665566677788999999998888877       88888877755689999999999


Q ss_pred             CCCCCCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        255 GGRPNYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       255 G~~p~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|..|+.... ..+.+++.+...+...+++++|||||++|+|+|..+...+.+|+|
T Consensus       151 Gs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtl  208 (472)
T PRK05976        151 GSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTV  208 (472)
T ss_pred             CCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            999976543222 234667777777777789999999999999999999988888886

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.89  E-value=1.6e-21  Score=182.16  Aligned_cols=201  Identities=32%  Similarity=0.477  Sum_probs=156.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      +...+|++|||+||+|+.+|..+.+.|.+++++|+..        ..|+.|...+|.|++...........+.....+ .
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~--------~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~   72 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR--------NVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-S   72 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc--------cccccccccCCCCHHHHHHHHHHHHHHhhhhhh-c
Confidence            3456899999999999999999999999999999743        267788899999987665544433333322222 1


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ....  ...+++..+..+.....+.+...+...+...+|+++.+....++...+.+...+|+...+.||+||+|||+.|.
T Consensus        73 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~  150 (461)
T PRK05249         73 SYRV--KLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPY  150 (461)
T ss_pred             ccCC--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence            1111  24568888888877766666556667778889999999888888888888887775568999999999999999


Q ss_pred             CCCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|++++... ..+++.++......+++++|||+|.+|+|.|..+...+.+|+|
T Consensus       151 ~p~~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtl  203 (461)
T PRK05249        151 RPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTL  203 (461)
T ss_pred             CCCCCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            988777643 3567777777777889999999999999999999988888886

>PRK14694 putative mercuric reductase; Provisional

Probab=99.89  E-value=1.5e-21  Score=182.52  Aligned_cols=200  Identities=27%  Similarity=0.481  Sum_probs=153.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH-HcC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV-AYG  178 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~  178 (312)
                      ....+|++|||+|++|+.+|..+.+.+.++.++|+..         .|+.|.+.+|.|++....+........... .++
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~---------~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g   73 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT---------IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDG   73 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc---------cccceecCCccccHHHHHHHHHHHHHhhccccCC
Confidence            4568999999999999999999999999999999642         688899999999988776665555443322 123


Q ss_pred             CccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhc-CCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185        179 WEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRD-KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                      ....   ...++|..+..+.......+... ....+.. .+|+++.+.+..++...+.++..+|+..++.||+||+|||+
T Consensus        74 ~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs  150 (468)
T PRK14694         74 LSAQ---APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA  150 (468)
T ss_pred             cccC---CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC
Confidence            2211   23578888887776665544322 2333443 48999999988888888888887775568999999999999


Q ss_pred             CCCCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+.|++||.+.. ..++.+...+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       151 ~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtl  206 (468)
T PRK14694        151 RPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTV  206 (468)
T ss_pred             CCCCCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            9999999998643 455566666666789999999999999999999988888886

>PRK06116 glutathione reductase; Validated

Probab=99.89  E-value=1.8e-21  Score=181.26  Aligned_cols=192  Identities=45%  Similarity=0.747  Sum_probs=153.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  180 (312)
                      .++|++|||+||+|+.+|..+.+.|.+++++|+.         ..|+.|.+.+|.|++....+......+.. ...+++.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~---------~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~   73 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK---------RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFD   73 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc---------chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCC
Confidence            3689999999999999999999999999999974         27888999999999987776655554444 3345543


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..   ...++|..+..+.....+.+.......+...+|+++.+++..++...+.+   +|  .++.||+||+|||+.|..
T Consensus        74 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~~  145 (450)
T PRK06116         74 VT---ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPSI  145 (450)
T ss_pred             CC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCC
Confidence            22   24678888888877666666555666777889999998877777766655   56  579999999999999999


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+ ..+++.++......+++++|||+|.+|+|.|..+...+.+|++
T Consensus       146 p~i~g~~-~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  195 (450)
T PRK06116        146 PDIPGAE-YGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHL  195 (450)
T ss_pred             CCCCCcc-eeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            9999875 3566777777777789999999999999999999888888876

>PRK14727 putative mercuric reductase; Provisional

Probab=99.88  E-value=2.9e-21  Score=180.89  Aligned_cols=201  Identities=27%  Similarity=0.433  Sum_probs=151.9

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...++|++|||+|++|+.+|..+.+.+.+++++|+..        .+|+.|.+.+|.|++....+............+++
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~--------~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~   84 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD--------VIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV   84 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC--------cceeEeccccccccHHHHHHHHHHHHHhhccccCc
Confidence            3467999999999999999999999999999999642        26888999999999987776655554444333343


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhc-CCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRD-KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      ...   ...++|..+..+.......+.. .....++. .+|+++.+...+.+...+.++..+|+..++.||+||||||+.
T Consensus        85 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~  161 (479)
T PRK14727         85 EAV---APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGST  161 (479)
T ss_pred             ccC---CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCC
Confidence            321   1245777766665555444322 23334443 489999999888888889998877755679999999999999


Q ss_pred             CCCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+++|.... .+++.+.......+++++|||+|.+|+|.|..+...+.+|++
T Consensus       162 p~~p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtl  216 (479)
T PRK14727        162 PTIPPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTI  216 (479)
T ss_pred             CCCCCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            999999997543 344444444455688999999999999999999888888886

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.88  E-value=5.8e-21  Score=178.43  Aligned_cols=195  Identities=33%  Similarity=0.549  Sum_probs=155.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+||+|+.+|..+.+.|.++.++|+..         .|+.|...+|.|++.................+++..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~---------~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~   73 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK---------LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA   73 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc---------cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc
Confidence            46899999999999999999999999999999632         688899999999988777766666666666666543


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      .   ...++|..+..+.....+.+...+...++..+|+++.+++..++...+++...+|. .++.||+||+|||+.|..|
T Consensus        74 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~  149 (462)
T PRK06416         74 E---NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPREL  149 (462)
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCC
Confidence            2   23578898888888777766656666777889999999888888888888754432 6799999999999999765


Q ss_pred             CCCCCC---cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~---~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +  |.+   ...+++.+...+...+++++|||+|++|+|.|..+...+.+||+
T Consensus       150 p--g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl  200 (462)
T PRK06416        150 P--GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTI  200 (462)
T ss_pred             C--CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            3  432   23457777777767789999999999999999999888878876

>PRK07846 mycothione reductase; Reviewed

Probab=99.88  E-value=3.5e-21  Score=178.81  Aligned_cols=191  Identities=25%  Similarity=0.466  Sum_probs=152.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|+||||+||+|..+|..  ..|.++.++|+..         .|+.|.+.+|.|++....+......+.....++....
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~---------~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   69 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT---------FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE   69 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC---------CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence            3799999999999988755  4588999999642         7889999999999988888777777766666775422


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhH-HHHHH-HhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNW-VTRVM-LRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                         ...+||..+..+.....+.+.. ..... ++..+|+++.++..+.+...+.+  .+|  +++.||+||+|||+.|+.
T Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v--~~g--~~~~~d~lViATGs~p~~  142 (451)
T PRK07846         70 ---LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRT--GDG--EEITADQVVIAAGSRPVI  142 (451)
T ss_pred             ---CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEE--CCC--CEEEeCEEEEcCCCCCCC
Confidence               2467999999888777666543 23344 67789999999988887766665  456  479999999999999999


Q ss_pred             CCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.... .++++++..+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       143 p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  194 (451)
T PRK07846        143 PPVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTV  194 (451)
T ss_pred             CCCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            999986443 456777777777889999999999999999999888888886

>PRK13748 putative mercuric reductase; Provisional

Probab=99.87  E-value=6.4e-21  Score=182.32  Aligned_cols=198  Identities=26%  Similarity=0.422  Sum_probs=150.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHH-cCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVA-YGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~  180 (312)
                      .++|++|||+||+|+.+|..+.+.|.++.++|+..         .|+.|.+.+|.|++....+............ +|+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~---------~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~  167 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT---------IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA  167 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc---------ceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence            36899999999999999999999999999999642         7888999999999987766655544433221 2432


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ..   ....+|..+..+.......+... ....+... +|+++.+.+.+.+...+.+++.+|+..++.||+||+|||+.|
T Consensus       168 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p  244 (561)
T PRK13748        168 AT---VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP  244 (561)
T ss_pred             CC---CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence            11   23467888777766555444321 22334444 899999998888888888887777556799999999999999


Q ss_pred             CCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|++||.+.. .+++.........+++++|||+|++|+|.|..+...+.+|+|
T Consensus       245 ~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  298 (561)
T PRK13748        245 AVPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTI  298 (561)
T ss_pred             CCCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            99999998642 344444444556788999999999999999999988889887

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.87  E-value=1.9e-20  Score=174.56  Aligned_cols=196  Identities=29%  Similarity=0.475  Sum_probs=158.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV  184 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  184 (312)
                      +++|||+|++|+.+|..+.+.|.++.++|+..         .|+.|.+.+|.|++....+............+|..... 
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~---------~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-   71 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD---------LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN-   71 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc---------ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC-
Confidence            68999999999999999999999999999742         67889999999999888777666666555556654321 


Q ss_pred             cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCC
Q psy11185        185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP  264 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~  264 (312)
                      ....+||..+..+.....+.+.......+...+++++.+...+.+...+.++..+| ..++.||+||+|||+.|+.|+++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~  150 (458)
T PRK06912         72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFA  150 (458)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCC
Confidence            12467898888887777666655666677888999999998888888888877555 35799999999999999888888


Q ss_pred             CCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        265 GAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       265 g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.+. ..+++.+...+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       151 ~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl  198 (458)
T PRK06912        151 PFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTI  198 (458)
T ss_pred             CCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            7643 4677778888778889999999999999999998887778876

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.87  E-value=1.2e-20  Score=180.46  Aligned_cols=200  Identities=32%  Similarity=0.425  Sum_probs=159.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH---HHcC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA---VAYG  178 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~  178 (312)
                      .+||++|||+|++|+.+|..+.+.|.++.++|...       ..+|+.|.+.+|.|++....+......+...   ..+|
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~-------~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G  187 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDD-------DSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG  187 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-------CccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence            47999999999999999999999999999999521       1389999999999999988888777766543   2344


Q ss_pred             Ccc---C------------CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCC-------ceEEeceeEEeeCCeEEEE
Q psy11185        179 WEI---P------------NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-------VDYLNALGKFIDQHSVEAT  236 (312)
Q Consensus       179 ~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------V~~~~~~~~~~~~~~~~v~  236 (312)
                      +..   +            ......+||..+..+.....+.+.......++..+       |+++.+...+.++..+.+.
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~  267 (659)
T PTZ00153        188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE  267 (659)
T ss_pred             eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence            320   0            00124679999999999888887766666676654       8999998888888877765


Q ss_pred             ecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        237 MKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       237 ~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       .+|  .++.||+||||||+.|..|++++.+. ..++++++..+...+++++|||||++|+|.|..+...+++||+
T Consensus       268 -~~g--~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTL  340 (659)
T PTZ00153        268 -KSG--KEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVS  340 (659)
T ss_pred             -cCC--EEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence             356  57999999999999999988766543 3667777777777889999999999999999998888888887

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.87  E-value=3.1e-20  Score=173.39  Aligned_cols=198  Identities=25%  Similarity=0.394  Sum_probs=157.9

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV  184 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  184 (312)
                      |++|||+|++|+.+|..+.+.+.++.++|+..         .|+.|.+.+|.|++....+......+.....+|......
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~---------~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~   73 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG---------LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDD   73 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC---------CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccC
Confidence            78999999999999999999999999999632         588899999999998777666666666655666543211


Q ss_pred             cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEE----eeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKF----IDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~----~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ....+||..+..+.....+.+.......++..+|+++.+++..    .+...+.+++.+|+..++.||+||+|||+.|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         74 GEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence            1346789998888888777666667777888899999998777    567788888877754579999999999999987


Q ss_pred             CCCCCCC-cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAK-EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.++.. ...+++.++......+++++|||+|.+|+|.|..|...+.+|++
T Consensus       154 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtl  205 (466)
T PRK07845        154 LPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTL  205 (466)
T ss_pred             CCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            7665443 23556666666667789999999999999999999988888886

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.87  E-value=3.4e-20  Score=173.07  Aligned_cols=195  Identities=32%  Similarity=0.516  Sum_probs=150.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH--HHHcCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD--AVAYGWE  180 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  180 (312)
                      ++|++|||+||+|+.+|..+.+.|.+++++|+..        ..|+.|.+.+|.|++....+....+.+..  ...++..
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~--------~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~   74 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS--------TLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE   74 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC--------ceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence            4899999999999999999999999999999632        27888999999999987766554443332  2334433


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .    ...++|.....+.......+.......++..+|+++.+.....+...+.+...+|+..++.||+||||||+.|. 
T Consensus        75 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-  149 (466)
T PRK06115         75 V----KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT-  149 (466)
T ss_pred             c----cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC-
Confidence            2    13568888777776666666556667777889999999887777778888777775567999999999999885 


Q ss_pred             CCCCCCC---cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~---~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       ++||..   .+.+++.+++.....+++++|||+|.+|+|.|..+...+.+|++
T Consensus       150 -~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtl  202 (466)
T PRK06115        150 -PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTV  202 (466)
T ss_pred             -CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence             345542   23566777766666789999999999999999999888888886

>TIGR02053 MerA mercuric reductase

Probab=99.86  E-value=4e-20  Score=172.81  Aligned_cols=192  Identities=34%  Similarity=0.553  Sum_probs=148.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      +|++|||+||+|+.+|..+.+.|.++.++|+..         .|+.|.+.+|.|++....+.......... .++.... 
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~---------~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~~-   69 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP---------LGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLAA-   69 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc---------ccCCeeeecEEccHHHHHHHHHHHHhhcc-CcccccC-
Confidence            699999999999999999999999999999632         67889999999998877666554444432 2443211 


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                        ...++|..+..........+.. .....++..+|+++.++....+...+.+  .+| ...+.+|+||+|||+.|+.|+
T Consensus        70 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v--~~g-~~~~~~~~lIiATGs~p~~p~  144 (463)
T TIGR02053        70 --TVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV--DLG-REVRGAKRFLIATGARPAIPP  144 (463)
T ss_pred             --CCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEE--cCC-eEEEEeCEEEEcCCCCCCCCC
Confidence              2467888888777666555543 2445567789999998877766665555  344 246899999999999999999


Q ss_pred             CCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +||.+.. .+++.++......+++++|||+|.+|+|+|..+...+.+|++
T Consensus       145 i~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtl  194 (463)
T TIGR02053       145 IPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTI  194 (463)
T ss_pred             CCCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            9998654 466777776666788999999999999999999988888886

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.86  E-value=9e-20  Score=170.47  Aligned_cols=196  Identities=37%  Similarity=0.565  Sum_probs=153.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.|.+++++|+..         .|+.|.+.+|.|++...........+.....++....
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~---------~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~   71 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEY---------LGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE   71 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC---------CCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC
Confidence            3799999999999999999999999999999722         5778999999998876655554444444444554322


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                         ...++|..+..+.......+.......++..+++++.+.....+...+.+++.+|. .++.||+||+|||+.|+.|+
T Consensus        72 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~  147 (461)
T TIGR01350        72 ---NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLP  147 (461)
T ss_pred             ---CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCC
Confidence               24578888877776666666555666777889999999887778888888876652 57999999999999999888


Q ss_pred             CC-CCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IP-GAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~-g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++ +... .++++.+...+...+++++|||+|.+|+++|..+...+.+|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  198 (461)
T TIGR01350       148 GPFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTV  198 (461)
T ss_pred             CCCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            76 4332 4667777777777789999999999999999999888888876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.86  E-value=1.1e-19  Score=169.87  Aligned_cols=194  Identities=28%  Similarity=0.487  Sum_probs=146.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~  181 (312)
                      ++|++|||+||+|+.+|..+.+.|.+++++|+.         ..|+.|.+.+|.|++...........+.. ...++.. 
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~---------~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-   73 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK---------YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-   73 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC---------CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-
Confidence            589999999999999999999999999999964         26888999999998876654443333332 2334432 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                       .  ...+++..+..+.....+.........+...+|+.+.+...+.+...+.+...+|+..++.||+||+|||+.|+.|
T Consensus        74 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~  150 (466)
T PRK07818         74 -G--EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL  150 (466)
T ss_pred             -c--CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence             1  2457888877776666555544555556677999999888888888888887777556899999999999999765


Q ss_pred             CCCCCC--cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAK--EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~--~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                        ||.+  ...+++.+.......+++++|||+|.+|+|.|..++..+.+|+|
T Consensus       151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl  200 (466)
T PRK07818        151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTI  200 (466)
T ss_pred             --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence              4432  23455555444455788999999999999999999988888886

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.85  E-value=1.3e-19  Score=169.75  Aligned_cols=202  Identities=27%  Similarity=0.365  Sum_probs=149.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH-HHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA-VAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..  +..+-...|+.|.+.+|.|++...........+... ..++...
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~--~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~   81 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWK--NPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV   81 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEeccc--CCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence            6899999999999999999999999999999721  111122478889999999987766555444444332 3455432


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee----CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID----QHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~----~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      .   ...+||..+..+.......+.......++..+|+++.++..+.+    .+.+.+...++  .++.||+||+|||+.
T Consensus        82 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~  156 (475)
T PRK06327         82 D---GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSE  156 (475)
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCC
Confidence            2   24578888888877766666556666777889999998877666    55565554444  589999999999999


Q ss_pred             CCCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+..+. ....+++.+...+...+++|+|||+|++|+|.+..+...+.+|+|
T Consensus       157 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl  211 (475)
T PRK06327        157 PRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTI  211 (475)
T ss_pred             CCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            976543332 223566676777667789999999999999999998888888886

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.85  E-value=1.1e-19  Score=169.83  Aligned_cols=190  Identities=34%  Similarity=0.544  Sum_probs=147.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|+||||+|++|+.+|..+.+.+.+++++|+.         ..|+.|...+|.|++...........+.....++....
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~---------~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~   73 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG---------PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD   73 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC---------ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            589999999999999999999999999999972         26888999999999877766655555555555664322


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHH-HHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVT-RVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                         ...+++..+..+.......+.... ...+...+++++.+.....+.+.+.+   ++  .++.||+||+|||+.  .|
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~--~p  143 (460)
T PRK06292         74 ---GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSR--VP  143 (460)
T ss_pred             ---CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCC--CC
Confidence               246788888888887777665544 45566789999988877777766655   55  679999999999998  44


Q ss_pred             CCCCCC----cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAK----EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~----~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||..    ...+++.+...+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       144 ~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl  197 (460)
T PRK06292        144 PIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTV  197 (460)
T ss_pred             CCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            556552    22456777777777889999999999999999998888888886

>TIGR03452 mycothione_red mycothione reductase

Probab=99.85  E-value=6.8e-20  Score=170.37  Aligned_cols=191  Identities=25%  Similarity=0.475  Sum_probs=146.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +||+||||+|++|+.++..  ..|.++.++|+..         .|+.|.+++|.|++....+......+.....++....
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~---------~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   70 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT---------FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE   70 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC---------CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence            5899999999999888644  4688999999642         7899999999999999888887777776666765422


Q ss_pred             CccccccCHHHHHHHHHH-HHHHhhHH-HHHHH--hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        183 NVKSVQHNWANLREAVQN-HVKSVNWV-TRVML--RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                         ...+||..+..+... ....+... .....  +..+|+++.++..+.+.+.+.+  .+|  .++.||+||+|||+.|
T Consensus        71 ---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g--~~~~~d~lIiATGs~p  143 (452)
T TIGR03452        71 ---IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDG--EEITGDQIVIAAGSRP  143 (452)
T ss_pred             ---CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCC--cEEEeCEEEEEECCCC
Confidence               245799999988866 44433221 12222  3479999999988777666555  456  4799999999999999


Q ss_pred             CCCCCCCCC-cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAK-EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|+..+.. ....++.++..+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       144 ~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  197 (452)
T TIGR03452       144 YIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTI  197 (452)
T ss_pred             CCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            888754432 23567777777777789999999999999999999888888886

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.84  E-value=2.2e-19  Score=166.73  Aligned_cols=181  Identities=32%  Similarity=0.454  Sum_probs=138.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+||+|+.+|..+.+.+.+++++|+...       ..|+.|...+|.|++....+...               
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~-------~~GG~c~~~gciP~k~~~~~~~~---------------   60 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA-------MYGGTCINIGCIPTKTLLVAAEK---------------   60 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc-------ccceeeecCccccchHhhhhhhc---------------
Confidence            58999999999999999999999999999997431       25888888899887765443221               


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                           .++|..+..+.......+.......+...+|+++.++..+.+...+.++..++ ..++.||+||+|||+.|+.|+
T Consensus        61 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~-~~~~~~d~vViATGs~~~~p~  134 (438)
T PRK07251         61 -----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDE-KIELTAETIVINTGAVSNVLP  134 (438)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCC-cEEEEcCEEEEeCCCCCCCCC
Confidence                 13555555544443333333334556778999999888777777777765332 357999999999999999999


Q ss_pred             CCCCCc--ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKE--HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +||...  ..+++.++..+...+++|+|||+|.+|+|.|..++..+.+|++
T Consensus       135 i~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtl  185 (438)
T PRK07251        135 IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTV  185 (438)
T ss_pred             CCCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            999743  3567777777767789999999999999999998888888876

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.83  E-value=9.1e-21  Score=173.44  Aligned_cols=188  Identities=21%  Similarity=0.256  Sum_probs=149.4

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -.||+|+|++|+++|++|||+|| +++|+.+|+++++.+.+.|++.|+++++++++++++...++ +.+.++++..    
T Consensus       182 G~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~----  256 (454)
T COG1249         182 GYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEG----  256 (454)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCC----
Confidence            45999999999999999999999 69999999999999999999999999999999999875554 7788877632    


Q ss_pred             CCccccccEEEEecCc----chHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                        .++++|.++++.|+    .++.+.....+.+.+ .+.+|..++|+.|+|||+||++...     .+.|.+..+++...
T Consensus       257 --~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~-----~Lah~A~~eg~iaa  329 (454)
T COG1249         257 --GTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGP-----MLAHVAMAEGRIAA  329 (454)
T ss_pred             --CEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCc-----ccHhHHHHHHHHHH
Confidence              26789999999997    345555555555553 6888888888899999999954443     36788888888888


Q ss_pred             HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185        173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL  224 (312)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~  224 (312)
                      .+. ++.     .....|+..+|..+|+.|+....+ .+.++.+.++++....
T Consensus       330 ~~i-~g~-----~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~  376 (454)
T COG1249         330 ENI-AGG-----KRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGK  376 (454)
T ss_pred             HHH-hCC-----CCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEE
Confidence            876 331     135678889999999998876663 4667777777764443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.83  E-value=6.2e-19  Score=163.80  Aligned_cols=181  Identities=27%  Similarity=0.429  Sum_probs=134.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+..       +..|+.|.+.+|.|++.......                
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~-------~~~GG~~~~~gcip~k~l~~~~~----------------   59 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN-------AMYGGTCINIGCIPTKTLVHDAQ----------------   59 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC-------CccceeEeeccccchHHHHHHhc----------------
Confidence            5899999999999999999999999999999743       13588888899988775432211                


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHH-hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                          ...+|.....+.....+.+.......+ +..+++++.+...+++...+.+.+.+|. .++.||+||+|||+.|..|
T Consensus        60 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         60 ----QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCC
Confidence                012444333333222222221122233 3458999999888888888888877762 3699999999999999999


Q ss_pred             CCCCCCc--ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKE--HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+.  ..+++..+......+++++|||+|.+|+|.|..+...+.+|++
T Consensus       135 ~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtl  186 (441)
T PRK08010        135 PIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTI  186 (441)
T ss_pred             CCCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            9999753  2456666776667788999999999999999999988888886

>KOG1335|consensus

Probab=99.82  E-value=7.2e-19  Score=151.81  Aligned_cols=197  Identities=35%  Similarity=0.547  Sum_probs=167.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH--HHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD--AVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~  179 (312)
                      .++|++|||+||.|..+|..+.+.|.....+|+..        ..|+.|.+.+|.|++.........+.+..  ...+|.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~--------~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi  109 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG--------TLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGI  109 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC--------ccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCc
Confidence            47999999999999999999999999999999754        38899999999999877766655555443  333454


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ...   +..+|.+.+..........+...+...+++++|+++.++..+.++..+.+...||+..++.++.+|+|||+.- 
T Consensus       110 ~vs---~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV-  185 (506)
T KOG1335|consen  110 DVS---SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV-  185 (506)
T ss_pred             ccc---ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc-
Confidence            433   4778999999998888888888899999999999999999999999999999999889999999999999853 


Q ss_pred             CCCCCCC---CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGA---KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~---~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       +++||.   +..+.++...+.+...|++.+|||+|.+|.|...-..+.+++||+
T Consensus       186 -~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~  239 (506)
T KOG1335|consen  186 -TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTV  239 (506)
T ss_pred             -CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEE
Confidence             346666   334788899999999999999999999999888887777789986

>KOG1335|consensus

Probab=99.81  E-value=2.9e-20  Score=160.37  Aligned_cols=198  Identities=18%  Similarity=0.214  Sum_probs=157.0

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -.||+|++..+.++|.+||++|. +++.+.+|.+++..+++.|+++||+|+++++++..+.+.++.+.+.+.+.++.+. 
T Consensus       220 G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~-  298 (506)
T KOG1335|consen  220 GYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKK-  298 (506)
T ss_pred             ceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCce-
Confidence            46999999999999999999998 7999999999999999999999999999999999998888778888887666554 


Q ss_pred             CCccccccEEEEecCc----chHHHHHHHHHCCCcE-EEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                        +++++|+++|+.|+    .||.+.....+.+.+. +.++...+|..|+||++||+. ..+    .+.|.+..++....
T Consensus       299 --~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~-~gp----MLAhkAeeegI~~V  371 (506)
T KOG1335|consen  299 --ETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVT-LGP----MLAHKAEEEGIAAV  371 (506)
T ss_pred             --eEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccC-Ccc----hhhhhhhhhchhhe
Confidence              78999999999996    6777666555554443 666777799999999999954 333    45666666666554


Q ss_pred             HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEeceeEEeeCC
Q psy11185        173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNALGKFIDQH  231 (312)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~~~~~~~~  231 (312)
                      ....-+       ..+.++..+|..++++|+.... ..++++++.||.|-.+...+..+.
T Consensus       372 E~i~g~-------~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNs  424 (506)
T KOG1335|consen  372 EGIAGG-------HGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANS  424 (506)
T ss_pred             eeeccc-------CcccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccc
Confidence            433212       3577888899999999985544 577889999999977765554433

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.75  E-value=2.1e-17  Score=152.56  Aligned_cols=188  Identities=20%  Similarity=0.239  Sum_probs=117.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      -..|++|||+|++|++++..|.+.+.. ++++|+...        .|+.... ..++.-...    .........  ..+
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~--------~Gg~W~~-~ry~~l~~~----~p~~~~~~~--~~p   71 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD--------VGGTWRY-NRYPGLRLD----SPKWLLGFP--FLP   71 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC--------cCCcchh-ccCCceEEC----CchheeccC--CCc
Confidence            467999999999999999999999998 999998653        3332111 000000000    000000000  111


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece--e-EEeeCCeEEEEecCCCeEEEEcCeEEEccC--
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL--G-KFIDQHSVEATMKNGEKKTLTAENILIATG--  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~--~-~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG--  255 (312)
                      ++ ......++.....++..+.+.+..       ...+.+....  + ...+...|+++.++|...++.||.||+|||  
T Consensus        72 ~~-~~~~~~~~~~~~~y~~~~~~~y~~-------~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~  143 (443)
T COG2072          72 FR-WDEAFAPFAEIKDYIKDYLEKYGL-------RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL  143 (443)
T ss_pred             cC-CcccCCCcccHHHHHHHHHHHcCc-------eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence            11 012233344444554444443331       2222221111  1 122345788888777443488999999999  


Q ss_pred             CCCCCCCCCCCCcc---eeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185        256 GRPNYPDIPGAKEH---CISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH  312 (312)
Q Consensus       256 ~~p~~p~~~g~~~~---~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~  312 (312)
                      +.|++|+++|.+.|   ..|++++.+. .+.+|+|+|||+|+||++.+.+|...+++||++
T Consensus       144 ~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~  204 (443)
T COG2072         144 SEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLS  204 (443)
T ss_pred             CCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEE
Confidence            68999999999887   5677666655 567889999999999999999999998999974

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.74  E-value=5.8e-18  Score=159.00  Aligned_cols=196  Identities=20%  Similarity=0.314  Sum_probs=121.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc--cccchhhHHHHHHHHHHHHHHHHHc-CCcc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN--VGCIPKKLMHQAALLGEAIKDAVAY-GWEI  181 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~  181 (312)
                      .++|||+|++||.++..+.+.|.+++++|+  ....+++|...+....  ...+++.....+    +   ....| .+++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~--~~~iGG~W~~~~~~~~g~~~~y~sl~~n~s----k---~~~~fsdfp~   73 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEK--SDDIGGLWRYTENPEDGRSSVYDSLHTNTS----K---EMMAFSDFPF   73 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEES--SSSSSGGGCHSTTCCCSEGGGSTT-B-SS-----G---GGSCCTTS-H
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEec--CCCCCccCeeCCcCCCCccccccceEEeeC----c---hHhcCCCcCC
Confidence            589999999999999999999999999996  4566777765431100  000000000000    0   00001 2233


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeE--EeeCCeEEEEe-cCCCeEEEEcCeEEEccC--C
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK--FIDQHSVEATM-KNGEKKTLTAENILIATG--G  256 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~--~~~~~~~~v~~-~~G~~~~i~ad~vVlAtG--~  256 (312)
                      +...+.++....+.+|+..+++.++..-..   +.+.++..-...  ......|.+++ .+|+.++..+|+||+|||  .
T Consensus        74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I---~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   74 PEDYPDFPSHSEVLEYLESYAEHFGLRKHI---RFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             CCCCSSSEBHHHHHHHHHHHHHHTTGGGGE---ETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhCCcceE---EEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence            433356778899999999999887642111   222222221110  00123566665 455556677999999999  5


Q ss_pred             CCCCCC--CCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185        257 RPNYPD--IPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH  312 (312)
Q Consensus       257 ~p~~p~--~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~  312 (312)
                      .|++|.  +||++.|   .+|+.++.... +.+|||+|||+|.||+|+|.+|+..+++|++|
T Consensus       151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s  212 (531)
T PF00743_consen  151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLS  212 (531)
T ss_dssp             CESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEE
T ss_pred             CCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEE
Confidence            688885  8998776   68888887664 57889999999999999999999999999875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG0405|consensus

Probab=99.73  E-value=3.7e-18  Score=145.75  Aligned_cols=171  Identities=23%  Similarity=0.322  Sum_probs=133.1

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -+||+|+|..|+.+|++++|+-| +.+|+.||+++++.+.++|..+||+++.++.++++.+..++-..+....+      
T Consensus       198 GYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~------  271 (478)
T KOG0405|consen  198 GYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG------  271 (478)
T ss_pred             ceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecc------
Confidence            36999999999999999999999 69999999999999999999999999999999999886555223333333      


Q ss_pred             CCccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                        ....+|.++|+.|+.    +|.+.....+... ..+++|++++|+.|+||+.||.|....     +.+.+...++.+.
T Consensus       272 --~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~-----LTPVAiaagr~la  344 (478)
T KOG0405|consen  272 --TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN-----LTPVAIAAGRKLA  344 (478)
T ss_pred             --ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe-----cchHHHhhhhhHH
Confidence              344699999999974    4554444444433 358889999999999999999876653     4445666677666


Q ss_pred             HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhH
Q psy11185        173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW  207 (312)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (312)
                      ... |+..    .+.++||+.++..+|++|..-..
T Consensus       345 ~rl-F~~~----~~~kldY~nVp~vVFshP~igtV  374 (478)
T KOG0405|consen  345 NRL-FGGG----KDTKLDYENVPCVVFSHPPIGTV  374 (478)
T ss_pred             HHh-hcCC----CCCccccccCceEEEecCCcccc
Confidence            643 5532    35789999999999999875444

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.3e-16  Score=137.92  Aligned_cols=162  Identities=23%  Similarity=0.251  Sum_probs=110.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .+|++|||+||+|+.+|.++.+.+.+ .++++...+...+..+.  + ..+.                       .++  
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~--~-veny-----------------------pg~--   54 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT--D-VENY-----------------------PGF--   54 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce--e-ecCC-----------------------CCC--
Confidence            58999999999999999999999988 67777643322111111  1 0000                       010  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC--eEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH--SVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~--~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                          +.......+...           +..++...++++....+..++..  .+.+++.+|  . +.+++||+|||..++
T Consensus        55 ----~~~~~g~~L~~~-----------~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~--~-~~ak~vIiAtG~~~~  116 (305)
T COG0492          55 ----PGGILGPELMEQ-----------MKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG--T-YEAKAVIIATGAGAR  116 (305)
T ss_pred             ----ccCCchHHHHHH-----------HHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC--e-EEEeEEEECcCCccc
Confidence                011222223222           22344566777776555544433  688999888  3 999999999999999


Q ss_pred             CCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|.+||...|    .+.+..++. .+.+|+|+|||||+||++.|.+|+..+++||+
T Consensus       117 ~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl  171 (305)
T COG0492         117 KLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTL  171 (305)
T ss_pred             CCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence            9988876543    123333344 46778999999999999999999999999987

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.71  E-value=7.1e-17  Score=149.67  Aligned_cols=195  Identities=19%  Similarity=0.289  Sum_probs=117.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc--cccchhh-HHHHHHHHHHHHHHH-----
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN--VGCIPKK-LMHQAALLGEAIKDA-----  174 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~--~~~~~~~-~~~~a~~~~~~~~~~-----  174 (312)
                      ..+++|||+|++|+.+|..+.+.|.+++++|+...  .++.|...+....  .+..+.. ..+..  ....+..+     
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~--vGG~W~~~~~~~~d~~~~~~~~~~~~s~--~Y~~L~tn~p~~~   85 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ--VGGLWVYTPKSESDPLSLDPTRSIVHSS--VYESLRTNLPREC   85 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC--CcceeecCCCcCCCccccCCCCcccchh--hhhhhhccCCHhh
Confidence            57899999999999999999999999999997643  3445543221100  0000000 00000  00001101     


Q ss_pred             HHc-CCccCC-------ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCce--E-EeceeEEee--CCeEEEEecC--
Q psy11185        175 VAY-GWEIPN-------VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD--Y-LNALGKFID--QHSVEATMKN--  239 (312)
Q Consensus       175 ~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~-~~~~~~~~~--~~~~~v~~~~--  239 (312)
                      ..| .+++..       ..+.++....+..|+..+.+.+           ++.  + .+..+..++  ...|.+++.+  
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-----------gl~~~I~~~t~V~~V~~~~~~w~V~~~~~~  154 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-----------KIEEMVRFETEVVRVEPVDGKWRVQSKNSG  154 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-----------CCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence            111 111111       0123445566666666555443           322  1 112222222  2456665543  


Q ss_pred             CCeEEEEcCeEEEccC--CCCCCCCCCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185        240 GEKKTLTAENILIATG--GRPNYPDIPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH  312 (312)
Q Consensus       240 G~~~~i~ad~vVlAtG--~~p~~p~~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~  312 (312)
                      +...+..+|+||+|||  +.|+.|+++|.+.+   .+|+.++.... +.+|+|+|||+|.||+++|.+|+..+++||++
T Consensus       155 ~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~  233 (461)
T PLN02172        155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIA  233 (461)
T ss_pred             CceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence            3334678999999999  67999999998765   45666665543 46788999999999999999999999999974

>KOG1399|consensus

Probab=99.71  E-value=9.8e-17  Score=146.45  Aligned_cols=201  Identities=20%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .-+++|||+|++||.+|..+.+.|..++++|+..+  .+++|..-..... ... +..........+.+...  ..++++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~--iGGlW~y~~~~~~-~~s-s~Y~~l~tn~pKe~~~~--~dfpf~   79 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD--IGGLWKYTENVEV-VHS-SVYKSLRTNLPKEMMGY--SDFPFP   79 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC--ccceEeecCcccc-ccc-chhhhhhccCChhhhcC--CCCCCc
Confidence            45899999999999999999999999999997543  2333322210000 000 00000000000111111  122333


Q ss_pred             Cc-cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC--CC
Q psy11185        183 NV-KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR--PN  259 (312)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~--p~  259 (312)
                      .. ....++...+..|+..+++.|.......+...-+++.....   +.|.+..+...+...+..+|.||+|||.+  |+
T Consensus        80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~---gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~  156 (448)
T KOG1399|consen   80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK---GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR  156 (448)
T ss_pred             ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC---CceeEEEecCCcceeEEEeeEEEEcccCcCCCC
Confidence            32 23457888999999999998885444433332222221110   34555554444324688899999999965  89


Q ss_pred             CCCCCC--CCcc---eeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185        260 YPDIPG--AKEH---CISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH  312 (312)
Q Consensus       260 ~p~~~g--~~~~---~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~  312 (312)
                      +|.++|  .+.|   .+|+.++... .+..|+|+|||.|+||+|++.+++..++.|+++
T Consensus       157 ~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~  215 (448)
T KOG1399|consen  157 IPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLS  215 (448)
T ss_pred             CCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCccee
Confidence            999888  3354   5788888865 456788999999999999999998888877753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.70  E-value=2.4e-17  Score=137.15  Aligned_cols=184  Identities=21%  Similarity=0.267  Sum_probs=96.9

Q ss_pred             EEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCccccc-C--CcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        107 LVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGL-G--GTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       107 vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~-G--d~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +|||+|++|+++|..|.+.+.+ ++++|+...  ..+.|.- .  ......... ...................+.  . 
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~--~Gg~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-   74 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR--PGGVWRRYYSYTRLHSPSFF-SSDFGLPDFESFSFDDSPEWR--W-   74 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSS--STTHHHCH-TTTT-BSSSCC-TGGSS--CCCHSCHHHHHHHH--H-
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC--CCCeeEEeCCCCccccCccc-cccccCCcccccccccCCCCC--C-
Confidence            6999999999999999999998 899997532  2333331 0  000000000 000000000000000000000  0 


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEE--eeCCeEEEEecCCCeEEEEcCeEEEccC--CC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKF--IDQHSVEATMKNGEKKTLTAENILIATG--GR  257 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~--~~~~~~~v~~~~G~~~~i~ad~vVlAtG--~~  257 (312)
                        ....+....+.+++..+.+.+           ++++..++ +..  .+...|.+++.++  +++.||.||+|||  +.
T Consensus        75 --~~~~~~~~~v~~yl~~~~~~~-----------~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   75 --PHDFPSGEEVLDYLQEYAERF-----------GLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSH  139 (203)
T ss_dssp             --SBSSEBHHHHHHHHHHHHHHT-----------TGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCS
T ss_pred             --CcccCCHHHHHHHHHHHHhhc-----------CcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCC
Confidence              012345555666555554433           33332222 211  1244588888888  7889999999999  48


Q ss_pred             CCCCCCCC-CCcceeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPG-AKEHCISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g-~~~~~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+++| .....+|+.++... ...+++|+|||+|.||++++..|...+++|++
T Consensus       140 p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~  195 (203)
T PF13738_consen  140 PRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTL  195 (203)
T ss_dssp             B---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred             CCccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence            88899999 44456677666554 45678899999999999999999999999987

...

>KOG4716|consensus

Probab=99.66  E-value=4.3e-17  Score=138.83  Aligned_cols=194  Identities=27%  Similarity=0.414  Sum_probs=142.8

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      -++|+|||.+|+.+|.+||++-||-+|++||+++++.+.+.|++.||+|...+.+.+++..+++.+.|..++..++..  
T Consensus       207 ~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~--  284 (503)
T KOG4716|consen  207 GYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEE--  284 (503)
T ss_pred             ceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeeccccccc--
Confidence            468999999999999999999999999999999999999999999999999999999998888877887766543322  


Q ss_pred             CccccccEEEEecCcchHHHHHHHHHCCC------cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGLAAAKEAAAHGR------KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~------~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                       .+-++|.|+|+.|+.++.-...|-..|.      +-+.++...+|+.|.|||+||..-..+    .+.+.+.+.++.++
T Consensus       285 -~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp----ELTPvAIqsGrlLa  359 (503)
T KOG4716|consen  285 -GEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP----ELTPVAIQSGRLLA  359 (503)
T ss_pred             -ccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc----ccchhhhhhchHHH
Confidence             3457999999999866543333322221      236677778999999999999776654    45566777788877


Q ss_pred             HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHH-----HHHhcCCceEEecee
Q psy11185        173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR-----VMLRDKKVDYLNALG  225 (312)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~gV~~~~~~~  225 (312)
                      +.. |+..     ....||+.++..+|+-.+.-...+.     ....+.+|+++++..
T Consensus       360 ~Rl-f~gs-----~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f  411 (503)
T KOG4716|consen  360 RRL-FAGS-----TQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYF  411 (503)
T ss_pred             HHH-hcCc-----ceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccc
Confidence            755 3321     3567888888877776543332221     123344677776653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.7e-16  Score=134.49  Aligned_cols=158  Identities=27%  Similarity=0.413  Sum_probs=106.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcE-EEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .||++|||+||+|-++|.+.++.|.+. ++-|.           .|+....+-.                  -.+|- . 
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer-----------fGGQvldT~~------------------IENfI-s-  259 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER-----------FGGQVLDTMG------------------IENFI-S-  259 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh-----------hCCeeccccc------------------hhhee-c-
Confidence            589999999999999999999988863 55443           2221111000                  00000 0 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe-----eCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI-----DQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~-----~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                          ....+.+.+...+           +...+...|++++.. ....     ...-+.+++.+|  -.+.++.+|+|||
T Consensus       260 ----v~~teGpkl~~al-----------e~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstG  322 (520)
T COG3634         260 ----VPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATG  322 (520)
T ss_pred             ----cccccchHHHHHH-----------HHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecC
Confidence                0111223333333           333444445543332 1111     134577889999  7899999999999


Q ss_pred             CCCCCCCCCCCCcc-------eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        256 GRPNYPDIPGAKEH-------CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~~~-------~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++++...+||.++|       |.||+..+   +.+|+|+|||||+||+|+|..|+--..+||+
T Consensus       323 ArWRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtl  382 (520)
T COG3634         323 ARWRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL  382 (520)
T ss_pred             cchhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeee
Confidence            99999999999875       45655544   7899999999999999999999999999986

>PRK10262 thioredoxin reductase; Provisional

Probab=99.65  E-value=1e-14  Score=130.11  Aligned_cols=166  Identities=19%  Similarity=0.250  Sum_probs=104.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      .+...|++|||+||+|+.+|..+.+.+.+++++|...         .|+.+.....                    .+.+
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~---------~gg~~~~~~~--------------------~~~~   53 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME---------KGGQLTTTTE--------------------VENW   53 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec---------CCCceecCce--------------------ECCC
Confidence            4567899999999999999999999998888887432         1222211100                    0111


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe--eCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                        +. .+..++++.+..++..+           ....++++..+....+  ....++++.+++   .+.||+||+|||+.
T Consensus        54 --~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~  116 (321)
T PRK10262         54 --PG-DPNDLTGPLLMERMHEH-----------ATKFETEIIFDHINKVDLQNRPFRLTGDSG---EYTCDALIIATGAS  116 (321)
T ss_pred             --CC-CCCCCCHHHHHHHHHHH-----------HHHCCCEEEeeEEEEEEecCCeEEEEecCC---EEEECEEEECCCCC
Confidence              10 01223444444443322           2223334433332222  234455654433   68999999999999


Q ss_pred             CCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|++||...+    ...+.........+++|+|||+|.+|+|.|..|+..+++|++
T Consensus       117 ~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtl  174 (321)
T PRK10262        117 ARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHL  174 (321)
T ss_pred             CCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            999999997543    122222233335678999999999999999999988888886

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.64  E-value=3.9e-16  Score=145.84  Aligned_cols=188  Identities=17%  Similarity=0.167  Sum_probs=128.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|.+|+++|.+|||+++ +++|+.+++++++.+.+.|++.||++++++.+++++..+++ +.+.+.+...+   .
T Consensus       184 ~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v~v~~~~~~~g---~  259 (466)
T PRK06115        184 VIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADG-VSLTLEPAAGG---A  259 (466)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-EEEEEEEcCCC---c
Confidence            4799999999999999999999 68999999999999999999999999999999999764333 44444321100   0


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ...+++|.||++.|+..    +.+.......+.+.++++.+++|+.|+|||+||++...     .+.+.+..++..+.++
T Consensus       260 ~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~-----~la~~A~~~g~~aa~~  334 (466)
T PRK06115        260 AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGP-----MLAHKAEDEAVACIER  334 (466)
T ss_pred             eeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHH
Confidence            14689999999999632    22222112222233566888899999999999965432     4677888888888777


Q ss_pred             HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185        175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA  223 (312)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~  223 (312)
                      . ++..      ..+++..++..+++.++....+ .+.+++..++++...
T Consensus       335 i-~~~~------~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~  377 (466)
T PRK06115        335 I-AGKA------GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVG  377 (466)
T ss_pred             H-cCCC------CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEE
Confidence            6 3311      1234445555555555543332 344555566665433

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.63  E-value=1.6e-14  Score=127.34  Aligned_cols=163  Identities=23%  Similarity=0.251  Sum_probs=105.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      +|++|||+|++|+.+|..+.+.+.+++++|+...         |+.+.....                  .  ..  ++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---------gg~~~~~~~------------------~--~~--~~~   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP---------GGQLTTTTE------------------V--EN--YPG   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC---------Ccceeeccc------------------c--cc--cCC
Confidence            5899999999999999999999999999996431         221111000                  0  00  000


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      . +..+....+..           .+...+++.++++....+..++  ...+.+++.+|  .++.||+||+|||+.|+.|
T Consensus        50 ~-~~~~~~~~~~~-----------~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        50 F-PEGISGPELME-----------KMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKL  115 (300)
T ss_pred             C-CCCCChHHHHH-----------HHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccC
Confidence            0 00011112221           2223455668888665554443  23466777676  6899999999999999989


Q ss_pred             CCCCCCcce----eccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHC----ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~----~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+||...+.    ..+.........+++|+|||+|.+|++.+..+...+.+|++
T Consensus       116 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~  169 (300)
T TIGR01292       116 GIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTL  169 (300)
T ss_pred             CCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence            999875431    11212222223567899999999999999999888888876

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.62  E-value=3.8e-15  Score=140.92  Aligned_cols=164  Identities=26%  Similarity=0.329  Sum_probs=108.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+||+|+.+|..+.+.|.+++++++.          .|+.+.....+                .+ ..++ 
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~----------~GG~~~~~~~~----------------~~-~~~~-  260 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER----------FGGQVLDTMGI----------------EN-FISV-  260 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCeeeccCcc----------------cc-cCCC-
Confidence            34689999999999999999999999999888642          34432211000                00 0000 


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQ--HSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                            ....+..+..+           +...++..++++...+ +..++.  ..+.+.+.+|  .++.||.||+|||+.
T Consensus       261 ------~~~~~~~l~~~-----------l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~  321 (517)
T PRK15317        261 ------PETEGPKLAAA-----------LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGAR  321 (517)
T ss_pred             ------CCCCHHHHHHH-----------HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCC
Confidence                  11233333333           2344556677776543 444432  3567777777  579999999999999


Q ss_pred             CCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|++||...+    .+.+.........+++|+|||||++|+++|..|...+++|+|
T Consensus       322 ~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl  379 (517)
T PRK15317        322 WRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTV  379 (517)
T ss_pred             cCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            999999987544    111112222234577999999999999999999999889886

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.62  E-value=2.8e-15  Score=134.41  Aligned_cols=144  Identities=17%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             hhhhhhhHhhhccCC-------------eEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE
Q psy11185         20 DSGLECAGFLNGLGF-------------NATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK   85 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-------------~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~   85 (312)
                      ..|+|+|..|+++..             +|+|+|+ +++|+.|++++++++++.|+++||++++++.|++++.+     .
T Consensus       165 ~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~  239 (405)
T COG1252         165 PTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-----G  239 (405)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----c
Confidence            378899988877643             8999999 69999999999999999999999999999999999643     4


Q ss_pred             EEEeeccccccCCCccccccEEEEecCcchHHHHHHH--HHCC--CcEEEEeccCCCCCCcccccCCccccccc-chhhH
Q psy11185         86 VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA--AAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGC-IPKKL  160 (312)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~--~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-~~~~~  160 (312)
                      |++++++       +.++++.+||++|..+..+...+  .+.+  .++++.+..+..+.++||++|||+..... .-++.
T Consensus       240 v~~~~g~-------~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~t  312 (405)
T COG1252         240 VTLKDGE-------EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT  312 (405)
T ss_pred             EEEccCC-------eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCCh
Confidence            7777662       25899999999997666655543  3323  23455445556789999999997655442 22355


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11185        161 MHQAALLGEAIKDAV  175 (312)
Q Consensus       161 ~~~a~~~~~~~~~~~  175 (312)
                      .+.|.+++..+..+.
T Consensus       313 AQ~A~Qqg~~~a~ni  327 (405)
T COG1252         313 AQAAHQQGEYAAKNI  327 (405)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            666777777776664

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.61  E-value=4.6e-15  Score=141.27  Aligned_cols=162  Identities=22%  Similarity=0.281  Sum_probs=105.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+||+|+.+|..+.+.+.+++++|+..         .|+.+......                    ..  .+
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~---------~GG~~~~~~~i--------------------~~--~p   52 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD---------FGGQITITSEV--------------------VN--YP   52 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC---------CCceEEecccc--------------------cc--CC
Confidence            4899999999999999999999999999999642         33322211100                    00  00


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .  ...+....+..++           ...+...++++....+..++.  ..+.+.+.+|   .+.+++||+|||++|+.
T Consensus        53 g--~~~~~~~~l~~~l-----------~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        53 G--ILNTTGPELMQEM-----------RQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASPRK  116 (555)
T ss_pred             C--CcCCCHHHHHHHH-----------HHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCccCC
Confidence            0  0011122222222           233455678876655544432  2355666665   57899999999999999


Q ss_pred             CCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+.+    .+.+.........+++|+|||||++|+|.|..|...+.+|++
T Consensus       117 ~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtl  171 (555)
T TIGR03143       117 LGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTV  171 (555)
T ss_pred             CCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEE
Confidence            999997532    111222222234678999999999999999999988888886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02546 glutathione reductase

Probab=99.61  E-value=2.2e-15  Score=142.54  Aligned_cols=182  Identities=23%  Similarity=0.338  Sum_probs=126.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|.+|+++|.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+.+++...++.+.+...++       
T Consensus       262 ~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g-------  334 (558)
T PLN02546        262 YIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG-------  334 (558)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe-------
Confidence            6999999999999999999999 58899999999999999999999999999999999764444333332211       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ....+|.||++.|+..    +.+.....+.+. ..+.+|++++|+.|+|||+||++...     ...+.+..++..+..
T Consensus       335 -~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~-----~l~~~A~~~g~~~a~  408 (558)
T PLN02546        335 -TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRI-----NLTPVALMEGGALAK  408 (558)
T ss_pred             -EEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCc-----ccHHHHHHHHHHHHH
Confidence             2334899999999632    112222223332 34788888999999999999976432     345567777777777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceE
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDY  220 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~  220 (312)
                      +. ++..     ....++..++..+|+.++....+ .+.++...++++
T Consensus       409 ~i-~g~~-----~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~  450 (558)
T PLN02546        409 TL-FGNE-----PTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDV  450 (558)
T ss_pred             HH-cCCC-----CCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCe
Confidence            65 3321     12234445556677766655443 344555555554

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.60  E-value=6.5e-15  Score=137.73  Aligned_cols=143  Identities=24%  Similarity=0.324  Sum_probs=109.0

Q ss_pred             hhhhhhhHhhhcc---CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~---g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      .+|+|+|.+|+.+   |.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++...++...+.+.++    
T Consensus       197 ~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g----  272 (486)
T TIGR01423       197 FISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG----  272 (486)
T ss_pred             HHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC----
Confidence            5899999888766   999999999 58999999999999999999999999999999999764444345555443    


Q ss_pred             cCCCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                          ..+++|.+|++.|+..    +.+.....+.+. ..+.+|+.++|+.|+|||+||++..     ....+.+..++..
T Consensus       273 ----~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~-----~~l~~~A~~qG~~  343 (486)
T TIGR01423       273 ----KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDR-----VMLTPVAINEGAA  343 (486)
T ss_pred             ----CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCC-----cccHHHHHHHHHH
Confidence                4689999999999532    222211122222 3477888889999999999996532     2455667788888


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +.++.
T Consensus       344 aa~ni  348 (486)
T TIGR01423       344 FVDTV  348 (486)
T ss_pred             HHHHH
Confidence            77766

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.60  E-value=7.2e-15  Score=136.72  Aligned_cols=167  Identities=23%  Similarity=0.321  Sum_probs=119.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++...++.+.+.+.++.      
T Consensus       176 ~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~------  249 (450)
T TIGR01421       176 YIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK------  249 (450)
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc------
Confidence            4899999999999999999999 589999999999999999999999999999999998643333455554431      


Q ss_pred             CccccccEEEEecCcchH----HHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGL----AAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl----~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|+..-    .+.....+.+. ..+.+|+.++|+.|+||++||++...     ...+.+..+++.+..
T Consensus       250 -~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~-----~~~~~A~~~g~~aa~  323 (450)
T TIGR01421       250 -SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV-----ELTPVAIAAGRKLSE  323 (450)
T ss_pred             -EEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc-----ccHHHHHHHHHHHHH
Confidence             35799999999996322    12211122222 34778888999999999999976432     345667788888777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHH
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVK  203 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (312)
                      +..-+..     ...+++..++..+|+.++
T Consensus       324 ~i~~~~~-----~~~~~~~~~p~~~f~~p~  348 (450)
T TIGR01421       324 RLFNGKT-----DDKLDYNNVPTVVFSHPP  348 (450)
T ss_pred             HHhcCCC-----CCccCcccCCeEEeCCCc
Confidence            6522210     122344455555555544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=99.59  E-value=8.1e-15  Score=138.70  Aligned_cols=149  Identities=15%  Similarity=0.220  Sum_probs=111.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .||+|+|.+|+++|++|||+++ +++|+.+|+++.+.+.+.|++.||++++++.+.+++...++.+.+.+.++.      
T Consensus       247 ~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~------  320 (561)
T PTZ00058        247 YIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR------  320 (561)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC------
Confidence            5899999999999999999999 589999999999999999999999999999999998643333444443321      


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc--------------------
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG--------------------  154 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~--------------------  154 (312)
                       ..+++|.|+++.|+..    +.+...........+.+|++++|+.|+|||+||++....                    
T Consensus       321 -~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~  399 (561)
T PTZ00058        321 -KYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLK  399 (561)
T ss_pred             -EEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccc
Confidence             3689999999999632    222211111223457888889999999999999765211                    


Q ss_pred             -------c--chhhHHHHHHHHHHHHHHHH
Q psy11185        155 -------C--IPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       155 -------~--~~~~~~~~a~~~~~~~~~~~  175 (312)
                             .  ....+.+.+..+++.+..+.
T Consensus       400 ~~~~~~~~~~~~~~la~~A~~~g~~aa~ni  429 (561)
T PTZ00058        400 KKENTSGESYYNVQLTPVAINAGRLLADRL  429 (561)
T ss_pred             cccccccccccCcCchHHHHHHHHHHHHHH
Confidence                   0  02356677888888887776

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.59  E-value=1.3e-14  Score=137.12  Aligned_cols=164  Identities=24%  Similarity=0.300  Sum_probs=106.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+||+|+.+|..+.+.|.++++++..          .|+.+.....+                .+ ..++ 
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~----------~GG~~~~~~~~----------------~~-~~~~-  261 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER----------IGGQVKDTVGI----------------EN-LISV-  261 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCccccCcCc----------------cc-cccc-
Confidence            34689999999999999999999999999888642          34322111000                00 0000 


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                            ....+..+...           +...+...++++...+ +..++  ...+.+++.+|  ..+.||+||+|||+.
T Consensus       262 ------~~~~~~~l~~~-----------l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       262 ------PYTTGSQLAAN-----------LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGAR  322 (515)
T ss_pred             ------CCCCHHHHHHH-----------HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCC
Confidence                  01122222222           2234455678876543 33332  33466777777  579999999999999


Q ss_pred             CCCCCCCCCCcce----eccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEHC----ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~~----~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|++||...+.    ..+.........+++|+|||||++|+|.|..|...+++|++
T Consensus       323 ~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtl  380 (515)
T TIGR03140       323 WRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTV  380 (515)
T ss_pred             cCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEE
Confidence            9989999864331    11111111223577999999999999999999988888886

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.59  E-value=4.8e-15  Score=138.63  Aligned_cols=182  Identities=17%  Similarity=0.155  Sum_probs=126.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|++.||++++++.+++++..++ .+.+.+.++       
T Consensus       185 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~g-------  256 (461)
T PRK05249        185 VIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GVIVHLKSG-------  256 (461)
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eEEEEECCC-------
Confidence            4899999999999999999999 5899999999999999999999999999999999976433 344555443       


Q ss_pred             CccccccEEEEecCcchH----HHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGL----AAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl----~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|+..-    .+.....+.+ ...+.+|..++|+.|+||++||++...     ...+.+..++..+..
T Consensus       257 -~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~  330 (461)
T PRK05249        257 -KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP-----SLASASMDQGRIAAQ  330 (461)
T ss_pred             -CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc-----ccHhHHHHHHHHHHH
Confidence             46889999999996321    1111112222 234778888999999999999965322     345677778877777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEe
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLN  222 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~  222 (312)
                      +.. +..      ...++..++..+++.++....+ .+.+++..++++..
T Consensus       331 ~i~-g~~------~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~  373 (461)
T PRK05249        331 HAV-GEA------TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEV  373 (461)
T ss_pred             HHc-CCC------cccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEE
Confidence            652 321      1234444555555554433332 34456666666543

>PLN02507 glutathione reductase

Probab=99.59  E-value=9.8e-15  Score=137.24  Aligned_cols=142  Identities=20%  Similarity=0.373  Sum_probs=110.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|++.||++++++.+++++...++ +.+.+.++       
T Consensus       213 ~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~~v~~~~g-------  284 (499)
T PLN02507        213 YIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-IKVITDHG-------  284 (499)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-EEEEECCC-------
Confidence            4899999999999999999999 58899999999999999999999999999999999754332 44554433       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.||++.|+..    +.+.....+.+. ..+.+|++++|+.|+|||+||++...     .+.+.+..+++.+..
T Consensus       285 -~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~-----~l~~~A~~qg~~aa~  358 (499)
T PLN02507        285 -EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI-----NLTPVALMEGTCFAK  358 (499)
T ss_pred             -cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC-----ccHHHHHHHHHHHHH
Confidence             4689999999999522    112222122222 34788888999999999999965432     356777888888877


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       359 ni  360 (499)
T PLN02507        359 TV  360 (499)
T ss_pred             HH
Confidence            75

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.58  E-value=3.9e-15  Score=139.23  Aligned_cols=187  Identities=14%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|+++ |++++++.+++++..++ .+.+.+.++..    .
T Consensus       184 ~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~-~~~v~~~~~~~----~  257 (471)
T PRK06467        184 IIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKED-GIYVTMEGKKA----P  257 (471)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCC-EEEEEEEeCCC----c
Confidence            4799999999999999999999 5899999999999999999988 99999999999876433 34555544311    0


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.||++.|+..    +.+.....+.+. ..+.+|.+++|+.|+|||+||++...     ...+.+..++..+..
T Consensus       258 ~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~-----~la~~A~~eG~~aa~  332 (471)
T PRK06467        258 AEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP-----MLAHKGVHEGHVAAE  332 (471)
T ss_pred             ceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc-----ccHHHHHHHHHHHHH
Confidence            14689999999999632    112211122222 34788888999999999999965322     356677778887777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL  224 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~  224 (312)
                      +. ++..      ..+++...+..++..++.... ..+.+++..|+++....
T Consensus       333 ~i-~g~~------~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~  377 (471)
T PRK06467        333 VI-AGKK------HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETAT  377 (471)
T ss_pred             HH-cCCC------CCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEE
Confidence            65 2311      123333344444444443322 23445666677765443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.57  E-value=6.5e-15  Score=137.64  Aligned_cols=182  Identities=18%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++||++++ +++|+.+++++.+.+.+.|+++||++++++.+.+++...+ .+.+.+.++       
T Consensus       187 ~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~g-------  258 (466)
T PRK07845        187 VTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGD-GVVVTLTDG-------  258 (466)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EEEEEECCC-------
Confidence            4899999999999999999999 5899999999999999999999999999999999975433 345555444       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.||++.|...    +.+.......+. ..+.+|+.++|+.|+|||+||++...     .+.+.+..++.....
T Consensus       259 -~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa~  332 (466)
T PRK07845        259 -RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVL-----PLASVAAMQGRIAMY  332 (466)
T ss_pred             -cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCc-----cchhHHHHHHHHHHH
Confidence             4689999999999522    112222122222 34778888999999999999965432     456677777777766


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEE
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYL  221 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~  221 (312)
                      +. ++...     ...++..++..+|+.++....+ .+.+++..++++.
T Consensus       333 ~i-~g~~~-----~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~  375 (466)
T PRK07845        333 HA-LGEAV-----SPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPAR  375 (466)
T ss_pred             HH-cCCCC-----CcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceE
Confidence            54 23110     1223444555555544433332 2344555565553

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.57  E-value=1.8e-14  Score=134.90  Aligned_cols=146  Identities=29%  Similarity=0.470  Sum_probs=110.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|.+|+++|.+|||++++++|+.+|+++++.+++.|+++||++++++.+.+++... +.+.+.+.++..     .
T Consensus       190 ~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~v~~~~~~~-----~  263 (484)
T TIGR01438       190 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKVKVTFTDSTN-----G  263 (484)
T ss_pred             HHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEEEEEecCCc-----c
Confidence            5899999999999999999999888999999999999999999999999999998887643 334566654421     1


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      .++++|.||++.|+..    +.+.....+.+  ...+.+|+.++|+.|+|||+||++...+    ...+.+..+++.+..
T Consensus       264 ~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~----~l~~~A~~~g~~aa~  339 (484)
T TIGR01438       264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ----ELTPVAIQAGRLLAQ  339 (484)
T ss_pred             eEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc----cchHHHHHHHHHHHH
Confidence            3689999999999632    11222122222  2357788889999999999999764332    345667778888777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       340 ~i  341 (484)
T TIGR01438       340 RL  341 (484)
T ss_pred             HH
Confidence            65

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.57  E-value=7.9e-15  Score=137.56  Aligned_cols=183  Identities=13%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+|||++++++|+.+|+++.+.+.+.|++.||++++++.+++++..++. +.+...+         
T Consensus       198 ~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~-~~v~~~~---------  267 (479)
T PRK14727        198 VVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNG-FVLTTGH---------  267 (479)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE-EEEEEcC---------
Confidence            589999999999999999999988889999999999999999999999999999998754332 3333322         


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      .++++|.+|++.|+..    +.+.....+.+. ..+.+|+.++|+.|+|||+||++...     ...+.+..+++.+..+
T Consensus       268 g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~G~~aa~~  342 (479)
T PRK14727        268 GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP-----QFVYVAAAAGSRAGIN  342 (479)
T ss_pred             CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc-----hhhhHHHHHHHHHHHH
Confidence            3578999999999632    222221122222 34788888999999999999965332     3445666777777776


Q ss_pred             HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185        175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL  224 (312)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~  224 (312)
                      . ++..      ..+++...+..++..++....+ .+.+++..|+++....
T Consensus       343 i-~g~~------~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~  386 (479)
T PRK14727        343 M-TGGN------ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRV  386 (479)
T ss_pred             H-cCCC------cccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEE
Confidence            5 3321      1233333444445555433332 3445666677765443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.56  E-value=3.5e-15  Score=133.21  Aligned_cols=195  Identities=18%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCCCCCccc----------ccCCcccccccc-hhhHHHHHHHHHHH
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQGTTW----------GLGGTCVNVGCI-PKKLMHQAALLGEA  170 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~~~~~v~----------a~Gd~~~~~~~~-~~~~~~~a~~~~~~  170 (312)
                      .+|+|.||.||++|++|..+.+.+ .+...+|+....++..=+          ..-|.++..+.. +.....+....++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            379999999999999999987766 678999976655544322          223333222211 11122222222222


Q ss_pred             HHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEe--cCCCeEEEE
Q psy11185        171 IKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATM--KNGEKKTLT  246 (312)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~--~~G~~~~i~  246 (312)
                       ......+       ...+...++..|+.+..+.+...    + ..+-++..-... .+.  ..+.|.+  .+|+..++.
T Consensus        82 -~~f~~~~-------~~~p~R~ef~dYl~Wva~~~~~~----v-~~~~~V~~I~~~-~~~~~~~~~V~~~~~~g~~~~~~  147 (341)
T PF13434_consen   82 -YEFYNRG-------YFFPSRREFNDYLRWVAEQLDNQ----V-RYGSEVTSIEPD-DDGDEDLFRVTTRDSDGDGETYR  147 (341)
T ss_dssp             -HHHHHH---------SS-BHHHHHHHHHHHHCCGTTT----E-EESEEEEEEEEE-EETTEEEEEEEEEETTS-EEEEE
T ss_pred             -hhhhhcC-------CCCCCHHHHHHHHHHHHHhCCCc----e-EECCEEEEEEEe-cCCCccEEEEEEeecCCCeeEEE
Confidence             1211111       23455566666655554433200    0 011111111110 111  2344444  567678999


Q ss_pred             cCeEEEccCCCCCCCCCCCC---CcceeccccccCC---CCCCCeEEEEcCchhhHHHHHHhhcCce--eeee
Q psy11185        247 AENILIATGGRPNYPDIPGA---KEHCISSDDIFSL---EKPPGKTLVVGAGYIGKLETWDSNSGCG--NVTI  311 (312)
Q Consensus       247 ad~vVlAtG~~p~~p~~~g~---~~~~~~~~~~~~~---~~~~~~v~VvG~G~sa~~~a~~l~~~~~--~V~~  311 (312)
                      |+.||+|||..|.+|++...   ...+.|+.++...   ...+++|+|||||+||.|++..|.....  +|++
T Consensus       148 ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~  220 (341)
T PF13434_consen  148 ARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTW  220 (341)
T ss_dssp             ESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred             eCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEE
Confidence            99999999999999876543   2456777766544   3456689999999999999999777653  5554

>PRK07846 mycothione reductase; Reviewed

Probab=99.54  E-value=1.2e-14  Score=135.25  Aligned_cols=184  Identities=17%  Similarity=0.140  Sum_probs=123.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|.+|+++|.+|||+++ +++|+.+++++++.+.+.+ +.+|++++++.+++++..+ +.+.+.+.++       
T Consensus       176 ~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~v~v~~~~g-------  246 (451)
T PRK07846        176 FIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SGVTLRLDDG-------  246 (451)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CEEEEEECCC-------
Confidence            5899999999999999999999 5889999999998887655 5689999999999997543 3345555443       


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|+.    .+.+.....+.+. ..+.+|++++|+.|+|||+||++...     .+.+.+..+++.+..
T Consensus       247 -~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~-----~l~~~A~~~g~~~a~  320 (451)
T PRK07846        247 -STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY-----QLKHVANHEARVVQH  320 (451)
T ss_pred             -cEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc-----cChhHHHHHHHHHHH
Confidence             468999999999952    2211211122222 34788888999999999999965332     355677788888877


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEec
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNA  223 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~  223 (312)
                      +.. +...    ....++..++..+|+.++.... ..+.+++..|+++...
T Consensus       321 ni~-~~~~----~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~  366 (451)
T PRK07846        321 NLL-HPDD----LIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVK  366 (451)
T ss_pred             HHc-CCCC----ccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEE
Confidence            662 2100    1122333344444444443332 2344555667665443

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.53  E-value=2e-14  Score=134.26  Aligned_cols=183  Identities=16%  Similarity=0.189  Sum_probs=123.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++++.+.+.|++.||++++++++++++... .  .+.+..+..     
T Consensus       180 ~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~--~v~~~~~g~-----  251 (458)
T PRK06912        180 VIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYK-K--QALFEYEGS-----  251 (458)
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-C--EEEEEECCc-----
Confidence            4899999999999999999999 589999999999999999999999999999999987532 2  233332211     


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ..++++|.+|++.|...    +.+.......+.+.+.+|++++|+.|+||++||++..     ..+.+.+..++.....+
T Consensus       252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~-----~~la~~A~~~g~~aa~~  326 (458)
T PRK06912        252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGG-----IQLAHVAFHEGTTAALH  326 (458)
T ss_pred             eEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCC-----cccHHHHHHHHHHHHHH
Confidence            13588999999999522    2112111122223477888899999999999996532     24566777788877776


Q ss_pred             HHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEe
Q psy11185        175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLN  222 (312)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~  222 (312)
                      . .+..      ..+++..++..+++.++.... ..+.+++..++++..
T Consensus       327 ~-~g~~------~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~  368 (458)
T PRK06912        327 A-SGED------VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRI  368 (458)
T ss_pred             H-cCCC------CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEE
Confidence            5 3311      122333344444544443333 234455555665543

>PRK14694 putative mercuric reductase; Provisional

Probab=99.53  E-value=2.1e-14  Score=134.44  Aligned_cols=182  Identities=16%  Similarity=0.134  Sum_probs=123.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+||+++++++|+.+++++.+.+.+.|++.||++++++.+.+++.++ +.+.+.. ++        
T Consensus       188 ~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~~v~~-~~--------  257 (468)
T PRK14694        188 VVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REFILET-NA--------  257 (468)
T ss_pred             HHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEE-CC--------
Confidence            4899999999999999999998888999999999999999999999999999999987543 3223332 22        


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      .++++|.||++.|...    +.+.....+.....+.+|++++|+.|+|||+||++...     ...+.+..++.....+.
T Consensus       258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~G~~aa~~i  332 (468)
T PRK14694        258 GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQP-----QFVYVAAAGGSRAAINM  332 (468)
T ss_pred             CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCc-----ccHHHHHHHHHHHHHHh
Confidence            3589999999999521    11111112223345788888999999999999965432     24455666777776665


Q ss_pred             HcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185        176 AYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA  223 (312)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~  223 (312)
                       ++.      ...+++..++..++..++....+ .+.+++..++++...
T Consensus       333 -~~~------~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~  374 (468)
T PRK14694        333 -TGG------DASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSR  374 (468)
T ss_pred             -cCC------CcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEE
Confidence             221      12233444444455555433332 344556666665443

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.53  E-value=2.4e-14  Score=134.26  Aligned_cols=188  Identities=17%  Similarity=0.186  Sum_probs=128.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|+++||++++++.+++++.+.+ .+.+.+.+++. +   
T Consensus       193 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~~~g-~---  267 (475)
T PRK06327        193 VIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GVSVAYTDADG-E---  267 (475)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EEEEEEEeCCC-c---
Confidence            3799999999999999999999 5889999999999999999999999999999999986433 34555554311 1   


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ...+++|.+|++.|...    +.+.....+.+ ...+.+|+.++|+.|+||++||++...     ...+.+..++..+..
T Consensus       268 ~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~-----~~~~~A~~~G~~aa~  342 (475)
T PRK06327        268 AQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP-----MLAHKAEEEGVAVAE  342 (475)
T ss_pred             eeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc-----chHHHHHHHHHHHHH
Confidence            13689999999999532    22222112222 235778888899999999999965432     356677777777777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL  224 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~  224 (312)
                      +. .+..      ..+++..++..+++.++.... ..+.+++..|+++....
T Consensus       343 ~i-~g~~------~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~  387 (475)
T PRK06327        343 RI-AGQK------GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGK  387 (475)
T ss_pred             HH-cCCC------CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEE
Confidence            65 2311      112333444444544443322 24455666787765554

>PRK06370 mercuric reductase; Validated

Probab=99.53  E-value=2.1e-14  Score=134.31  Aligned_cols=188  Identities=15%  Similarity=0.084  Sum_probs=125.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||+++ +++++.+++++.+.+.+.|++.||++++++.+.+++..+++ +.+.+.....     
T Consensus       181 ~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~~v~~~~~~~-----  254 (463)
T PRK06370        181 YIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDG-IAVGLDCNGG-----  254 (463)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEEEEeCCC-----
Confidence            4799999999999999999999 58999999999999999999999999999999999764333 3444432111     


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.||++.|...    +.+.....+.+. ..+.+|+.++|+.|+|||+||++..     ....+.+..++..+..
T Consensus       255 ~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~-----~~~~~~A~~~g~~aa~  329 (463)
T PRK06370        255 APEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGR-----GAFTHTAYNDARIVAA  329 (463)
T ss_pred             ceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCC-----cccHHHHHHHHHHHHH
Confidence            14689999999999522    222221122222 3478888899999999999996533     2355677778888877


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL  224 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~  224 (312)
                      +.. +..     ...+++..++..++..++....+ .+.++++.|+++....
T Consensus       330 ni~-~~~-----~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~  375 (463)
T PRK06370        330 NLL-DGG-----RRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGT  375 (463)
T ss_pred             HHh-CCC-----CCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEE
Confidence            762 210     11233333444444444433332 3345556676654443

>PRK06116 glutathione reductase; Validated

Probab=99.53  E-value=6.7e-14  Score=130.51  Aligned_cols=181  Identities=24%  Similarity=0.362  Sum_probs=126.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++++.+++.++++.+.+.+.++       
T Consensus       177 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g-------  249 (450)
T PRK06116        177 YIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG-------  249 (450)
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC-------
Confidence            5899999999999999999999 58899999999999999999999999999999999865444345555544       


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.||++.|..    .+.+.....+.+. ..+.+|.+++|+.|+||++||++...     ...+.+..++..+..
T Consensus       250 -~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~  323 (450)
T PRK06116        250 -ETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV-----ELTPVAIAAGRRLSE  323 (450)
T ss_pred             -cEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc-----CcHHHHHHHHHHHHH
Confidence             468999999999952    2222221122222 34778888999999999999965322     355677888888877


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCc
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKV  218 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV  218 (312)
                      +. ++...    +..+++..++..+|+.++....+ .+.+++..+.
T Consensus       324 ~i-~g~~~----~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~  364 (450)
T PRK06116        324 RL-FNNKP----DEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYG  364 (450)
T ss_pred             HH-hCCCC----CCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCC
Confidence            65 23110    12344555566666655433332 2333444443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.53  E-value=6.1e-14  Score=130.49  Aligned_cols=142  Identities=23%  Similarity=0.341  Sum_probs=109.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++++.+.+.|++.||++++++.+.+++...++ +.+.+.++       
T Consensus       176 ~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g-------  247 (446)
T TIGR01424       176 YIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-LKVTLSHG-------  247 (446)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-EEEEEcCC-------
Confidence            6899999999999999999999 58899999999999999999999999999999999764333 45555443       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.+|++.|...    +.+.....+.+. ..+.+|++++|+.|+|||+||++..     ....+.+..+++.+..
T Consensus       248 -~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~-----~~l~~~A~~~g~~~a~  321 (446)
T TIGR01424       248 -EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR-----INLTPVAIMEATCFAN  321 (446)
T ss_pred             -cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC-----ccchhHHHHHHHHHHH
Confidence             4689999999999632    212211122222 3478888899999999999996532     2456677778887777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       322 ~i  323 (446)
T TIGR01424       322 TE  323 (446)
T ss_pred             HH
Confidence            65

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK13748 putative mercuric reductase; Provisional

Probab=99.53  E-value=2.1e-14  Score=137.59  Aligned_cols=181  Identities=15%  Similarity=0.165  Sum_probs=122.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|.+|+++|.+|||++++++|+.+|+++++.+.+.|++.||++++++.+++++..+ +.+.+...+         
T Consensus       280 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~~v~~~~---------  349 (561)
T PRK13748        280 VVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEFVLTTGH---------  349 (561)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEecC---------
Confidence            5899999999999999999999878888999999999999999999999999999987543 323333221         


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      .++++|.||++.|...    +.+.....+.+. ..+.+|++++|+.|+|||+||++...     ...+.+..++..+..+
T Consensus       350 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~~  424 (561)
T PRK13748        350 GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP-----QFVYVAAAAGTRAAIN  424 (561)
T ss_pred             CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc-----cchhHHHHHHHHHHHH
Confidence            3589999999999532    212221122222 34788889999999999999965432     3445566677777776


Q ss_pred             HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEe
Q psy11185        175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLN  222 (312)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~  222 (312)
                      . ++..      ..+++...+..++..++....+ .+.+++..|+++..
T Consensus       425 i-~g~~------~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~  466 (561)
T PRK13748        425 M-TGGD------AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDS  466 (561)
T ss_pred             H-cCCC------cccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEE
Confidence            5 2321      1223333333444444433332 33455556665543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.53  E-value=2.3e-14  Score=133.24  Aligned_cols=141  Identities=17%  Similarity=0.272  Sum_probs=104.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+.+++.++ +.+.+...+        
T Consensus       168 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v~v~~~~--------  238 (441)
T PRK08010        168 YIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHE-NQVQVHSEH--------  238 (441)
T ss_pred             HHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEcC--------
Confidence            4799999999999999999999 588999999999999999999999999999999997643 323333221        


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.+|++.|...    +.+.....+.+. ..+.+|++++|+.|+|||+||++...     ...+.+..+++.+..
T Consensus       239 -g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~a~~~~~~~~~  312 (441)
T PRK08010        239 -AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGL-----QFTYISLDDYRIVRD  312 (441)
T ss_pred             -CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCc-----cchhHHHHHHHHHHH
Confidence             3478999999999522    222221122222 34788888999999999999965432     345556666666665


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       313 ~~  314 (441)
T PRK08010        313 EL  314 (441)
T ss_pred             HH
Confidence            54

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.52  E-value=8.3e-14  Score=130.37  Aligned_cols=185  Identities=18%  Similarity=0.209  Sum_probs=126.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--ecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++..+ +.+.+.+.  +++    
T Consensus       182 ~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~----  256 (466)
T PRK07818        182 AIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKVTVTVSKKDGK----  256 (466)
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeEEEEEEecCCC----
Confidence            3799999999999999999999 599999999999999999999999999999999997643 33445554  221    


Q ss_pred             CCCccccccEEEEecCcchH----HHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSGGL----AAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAI  171 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~gl----~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~  171 (312)
                        ..++++|.||++.|+...    .+.......+. ..+.+|..++|+.|+||++||++..     ..+.+.+..++...
T Consensus       257 --~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~-----~~l~~~A~~~g~~a  329 (466)
T PRK07818        257 --AQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAK-----LQLAHVAEAQGVVA  329 (466)
T ss_pred             --eEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCC-----cccHhHHHHHHHHH
Confidence              136899999999996321    12221122222 3477888899999999999996532     24667777888888


Q ss_pred             HHHHHcCCccCCcccccc-CHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEe
Q psy11185        172 KDAVAYGWEIPNVKSVQH-NWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLN  222 (312)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~  222 (312)
                      ..+. ++...     ..+ ++..++..+++.++.... ..+.+++..|+++..
T Consensus       330 a~~i-~g~~~-----~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~  376 (466)
T PRK07818        330 AETI-AGAET-----LELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKV  376 (466)
T ss_pred             HHHH-cCCCC-----CccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEE
Confidence            7766 23210     112 344444444544443332 234455555666543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.52  E-value=8.2e-14  Score=128.77  Aligned_cols=143  Identities=23%  Similarity=0.211  Sum_probs=104.0

Q ss_pred             hhhhhhhHhhhcc--------------CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee
Q psy11185         20 DSGLECAGFLNGL--------------GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL   84 (312)
Q Consensus        20 ~ig~E~A~~l~~~--------------g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~   84 (312)
                      .+|+|+|..|+.+              +.+|||+++ +++|+.+++++++.+++.|+++||++++++.++++..+     
T Consensus       183 ~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-----  257 (424)
T PTZ00318        183 PTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-----  257 (424)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-----
Confidence            5899999998863              789999999 58999999999999999999999999999999988632     


Q ss_pred             EEEEeeccccccCCCccccccEEEEecCcchHHHHHHH-HHCC-CcEEEEeccCC-CCCCcccccCCcccccccchhhHH
Q psy11185         85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAHG-RKVIVLDYVIP-SPQGTTWGLGGTCVNVGCIPKKLM  161 (312)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~~-~~~~~ve~~~~-~~~~~v~a~Gd~~~~~~~~~~~~~  161 (312)
                      .+.+.++        +++++|++||+.|.....+...+ ...+ ...+.+|+.++ ++.|+|||+|||+...+....+..
T Consensus       258 ~v~~~~g--------~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~  329 (424)
T PTZ00318        258 EVVLKDG--------EVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLA  329 (424)
T ss_pred             EEEECCC--------CEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCch
Confidence            4667665        57899999999995332222222 1112 23466777776 689999999997654322122344


Q ss_pred             HHHHHHHHHHHHHH
Q psy11185        162 HQAALLGEAIKDAV  175 (312)
Q Consensus       162 ~~a~~~~~~~~~~~  175 (312)
                      ..+..++..+..+.
T Consensus       330 ~~A~~qg~~~A~ni  343 (424)
T PTZ00318        330 QVASQQGVYLAKEF  343 (424)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55566666655543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.50  E-value=2.2e-13  Score=127.44  Aligned_cols=145  Identities=18%  Similarity=0.234  Sum_probs=109.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++++++++.+++ .+.+.+.++..     
T Consensus       182 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~gg~-----  255 (462)
T PRK06416        182 YIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GVTVTLEDGGK-----  255 (462)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEEeCCe-----
Confidence            4899999999999999999999 6899999999999999999999999999999999986433 34555544311     


Q ss_pred             CccccccEEEEecCcchH-H---HHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGL-A---AAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl-~---~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ...+++|.+|++.|.... .   +.......+...+.+|.+++|+.|+||++||++..     ....+.+..++..+..+
T Consensus       256 ~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~-----~~~~~~A~~~g~~aa~n  330 (462)
T PRK06416        256 EETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGG-----PMLAHKASAEGIIAAEA  330 (462)
T ss_pred             eEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCC-----cchHHHHHHHHHHHHHH
Confidence            145789999999995321 1   11111222333477888889999999999996542     23566777788877776


Q ss_pred             H
Q psy11185        175 V  175 (312)
Q Consensus       175 ~  175 (312)
                      .
T Consensus       331 i  331 (462)
T PRK06416        331 I  331 (462)
T ss_pred             H
Confidence            5

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.50  E-value=1.7e-13  Score=127.27  Aligned_cols=143  Identities=14%  Similarity=0.143  Sum_probs=105.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++++++++.   .  .+.+.++       
T Consensus       158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~--~v~~~~g-------  225 (438)
T PRK13512        158 YISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING---N--EVTFKSG-------  225 (438)
T ss_pred             HHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C--EEEECCC-------
Confidence            5899999999999999999999 5889999999999999999999999999999999863   2  4556554       


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccc----cc-hhhHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVG----CI-PKKLMHQAALLGEA  170 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~----~~-~~~~~~~a~~~~~~  170 (312)
                       ..+++|.+|++.|+.. ....... ...+. ..+.+|+.++|+.|+|||+||++....    .. .....+.+..++..
T Consensus       226 -~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~  304 (438)
T PRK13512        226 -KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI  304 (438)
T ss_pred             -CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence             4578999999999632 2222111 22222 346778888999999999999764321    10 12344556666666


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       305 ~a~ni  309 (438)
T PRK13512        305 VAEQI  309 (438)
T ss_pred             HHHHh
Confidence            66654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.50  E-value=5.5e-14  Score=131.79  Aligned_cols=188  Identities=18%  Similarity=0.195  Sum_probs=122.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-CCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-ADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+.+++.. .++...+...+++.    
T Consensus       190 ~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~----  265 (472)
T PRK05976        190 VIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEE----  265 (472)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCce----
Confidence            4799999999999999999999 58999999999999999999999999999999998742 22212222333321    


Q ss_pred             CCccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                        ..+++|.+|++.|...    +.+...........+.+++.++++.++||++||++...     ...+.+..++.....
T Consensus       266 --~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~  338 (472)
T PRK05976        266 --KTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP-----QLAHVAMAEGEMAAE  338 (472)
T ss_pred             --EEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHH
Confidence              3689999999999632    21111111122345778888899999999999965321     345566777777666


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL  224 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~  224 (312)
                      +. .+..     ...+++...+..++..++.... ..+.+++..|+++....
T Consensus       339 ~i-~g~~-----~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~  384 (472)
T PRK05976        339 HI-AGKK-----PRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGK  384 (472)
T ss_pred             HH-cCCC-----CCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEE
Confidence            54 2311     1122222233333333332222 24455666677765443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.49  E-value=3.5e-13  Score=123.62  Aligned_cols=144  Identities=16%  Similarity=0.127  Sum_probs=107.2

Q ss_pred             hhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         21 SGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      +|+|+|..|+++|.+|||+++ +++|+. +++.+.+++.+.+++.||++++++.+++++.  ++.+.+.+.++       
T Consensus       155 ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g-------  225 (396)
T PRK09754        155 IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSG-------  225 (396)
T ss_pred             HHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCC-------
Confidence            799999999999999999999 577764 6889999999999999999999999999874  33345566555       


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc----hhhHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI----PKKLMHQAALLGEAIK  172 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~----~~~~~~~a~~~~~~~~  172 (312)
                       ..+++|.||++.|... ..++..+ ...+ +.+++|.+++|+.|+|||+||++......    .....+.+..+++.+.
T Consensus       226 -~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa  303 (396)
T PRK09754        226 -ETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAA  303 (396)
T ss_pred             -CEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHH
Confidence             5689999999999633 2222211 1122 34788988999999999999977543211    1123456777788777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       304 ~ni  306 (396)
T PRK09754        304 AAM  306 (396)
T ss_pred             HHh
Confidence            766

>TIGR02053 MerA mercuric reductase

Probab=99.48  E-value=2.1e-13  Score=127.67  Aligned_cols=187  Identities=16%  Similarity=0.154  Sum_probs=125.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||+++ +++|+.+|+++.+.+.+.|++.||++++++++++++.+++ ...+.+...+.     
T Consensus       176 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~~~v~~~~~~~-----  249 (463)
T TIGR02053       176 AIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGG-GKIITVEKPGG-----  249 (463)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-EEEEEEEeCCC-----
Confidence            4799999999999999999999 5899999999999999999999999999999999976433 23444432111     


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.||++.|..    ++.+.....+.+. ..+.+|..++|+.|+|||+||++..     ....+.+..++..+..
T Consensus       250 ~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~-----~~~~~~A~~~g~~aa~  324 (463)
T TIGR02053       250 QGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGG-----LQLEYVAAKEGVVAAE  324 (463)
T ss_pred             ceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCC-----cccHhHHHHHHHHHHH
Confidence            1468999999999952    2222221122222 3477888899999999999996543     2356677788887777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA  223 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~  223 (312)
                      +. ++..     ...+++..++..++..++....+ .+.+++..|+++...
T Consensus       325 ni-~~~~-----~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~  369 (463)
T TIGR02053       325 NA-LGGA-----NAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCR  369 (463)
T ss_pred             Hh-cCCC-----CCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEE
Confidence            65 2310     11223333344444444433332 334555666665443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.48  E-value=2.3e-13  Score=128.05  Aligned_cols=175  Identities=25%  Similarity=0.349  Sum_probs=121.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+|||++++++|+.+|+++++.+.+.|++.||++++++.+.+++...+ .+.+.+.++        
T Consensus       192 ~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~g--------  262 (499)
T PTZ00052        192 YIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDD-KIKVLFSDG--------  262 (499)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC-eEEEEECCC--------
Confidence            48999999999999999999988888999999999999999999999999999998876433 245555544        


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..+++|.||++.|+..    +.+.....+.+.  .+++++.  +|+.|+|||+||++...+    ...+.+..++..+..
T Consensus       263 ~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~----~l~~~A~~~g~~aa~  336 (499)
T PTZ00052        263 TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRP----ELTPVAIKAGILLAR  336 (499)
T ss_pred             CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCc----ccHHHHHHHHHHHHH
Confidence            4578999999999632    222211122222  2344444  899999999999664332    355677778887777


Q ss_pred             HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhc
Q psy11185        174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRD  215 (312)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  215 (312)
                      +.. +..     ...+++..++..+|+.++....+ .+.+++.
T Consensus       337 ni~-g~~-----~~~~~~~~~p~~ift~p~ia~vGlte~~A~~  373 (499)
T PTZ00052        337 RLF-KQS-----NEFIDYTFIPTTIFTPIEYGACGYSSEAAIA  373 (499)
T ss_pred             HHh-CCC-----CCcCccccCCeEEecCCcceeecCCHHHHHH
Confidence            652 211     12345555666666666544433 3334443

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.48  E-value=5e-13  Score=121.83  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=105.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|.+.|.+||++++ +++++. +++++.+.+.+.|++.||++++++.+.++..+. +...+.+.++      
T Consensus       151 ~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~g------  223 (377)
T PRK04965        151 LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SGIRATLDSG------  223 (377)
T ss_pred             HHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-CEEEEEEcCC------
Confidence            4899999999999999999999 577765 588999999999999999999999999987543 3345666554      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                        ..+++|.+|++.|.. ...++..+ ...+ +.+++|+.++|+.|+|||+||++...+... .....+..++..+..+.
T Consensus       224 --~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~gi~vd~~l~ts~~~VyA~GD~a~~~~~~~-~~~~~a~~~g~~~a~n~  299 (377)
T PRK04965        224 --RSIEVDAVIAAAGLRPNTALARRAGLAVN-RGIVVDSYLQTSAPDIYALGDCAEINGQVL-PFLQPIQLSAMALAKNL  299 (377)
T ss_pred             --cEEECCEEEECcCCCcchHHHHHCCCCcC-CCEEECCCcccCCCCEEEeeecEeECCcee-ehHHHHHHHHHHHHHHh
Confidence              578999999999953 23333221 1222 247788889999999999999765543211 12233455666665554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.47  E-value=4.1e-13  Score=132.73  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=110.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC-CeeEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD-GKLKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+ .+|+++++.+.+.|+++||++++++.++++..+++ ....+.+.++     
T Consensus       155 ~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG-----  229 (847)
T PRK14989        155 LLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG-----  229 (847)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC-----
Confidence            3899999999999999999999 57776 58999999999999999999999999999975332 2235666655     


Q ss_pred             CCCccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                         .++++|.||++.|... ..++... ...+. ..+++|..++|+.|+|||+||++...+.. ..+...+..++..+..
T Consensus       230 ---~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-~gl~~~a~~~a~vaa~  305 (847)
T PRK14989        230 ---SELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-FGLVAPGYKMAQVAVD  305 (847)
T ss_pred             ---CEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-cccHHHHHHHHHHHHH
Confidence               5789999999999532 2232211 22222 35888999999999999999976554321 2344566677777766


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       306 ~i  307 (847)
T PRK14989        306 HL  307 (847)
T ss_pred             Hh
Confidence            54

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.47  E-value=4.7e-13  Score=128.54  Aligned_cols=151  Identities=15%  Similarity=0.098  Sum_probs=108.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHH-hccceEEEeeceeeEEEEcCCC-eeEEEEeeccccc-
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEM-AEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVR-   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~-   95 (312)
                      .||+|+|.+|+++|++|||+++ +++|+.+|+++++++.+.+ ++.||++++++.+.+++...++ .+.+.+.+..+.. 
T Consensus       322 ~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~  401 (659)
T PTZ00153        322 IIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGES  401 (659)
T ss_pred             HHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccc
Confidence            5899999999999999999999 6999999999999999986 6799999999999999864332 2444443211000 


Q ss_pred             ------cCCCccccccEEEEecCcc----hHHHHHHHHHCCCcEEEEeccCCCC------CCcccccCCcccccccchhh
Q psy11185         96 ------QDNTHKYDYDLLVLGGGSG----GLAAAKEAAAHGRKVIVLDYVIPSP------QGTTWGLGGTCVNVGCIPKK  159 (312)
Q Consensus        96 ------~~~~~~~~~d~vivg~G~~----gl~~a~~~~~~~~~~~~ve~~~~~~------~~~v~a~Gd~~~~~~~~~~~  159 (312)
                            .....++++|.|||++|+.    ++.+.....+.+...+.+|++++++      .|+|||+||++ ..    ..
T Consensus       402 ~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~----~~  476 (659)
T PTZ00153        402 DGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GK----QM  476 (659)
T ss_pred             cccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecC-CC----cc
Confidence                  0001268999999999962    2222221122233457888888886      58999999964 32    24


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11185        160 LMHQAALLGEAIKDAV  175 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~~  175 (312)
                      +.+.+..++..+..+.
T Consensus       477 La~~A~~qg~~aa~ni  492 (659)
T PTZ00153        477 LAHTASHQALKVVDWI  492 (659)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            6678888888887766

>TIGR03452 mycothione_red mycothione reductase

Probab=99.47  E-value=3.6e-13  Score=125.45  Aligned_cols=141  Identities=19%  Similarity=0.209  Sum_probs=106.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.+ +.+|++++++.+++++.++++ +.+.+.++       
T Consensus       179 ~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~-v~v~~~~g-------  249 (452)
T TIGR03452       179 YIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDG-VTLTLDDG-------  249 (452)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCe-EEEEEcCC-------
Confidence            5899999999999999999999 5888999999999888755 468999999999999764333 45555443       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.+|++.|+..    +.+.....+.+. ..+.+|++++|+.|+|||+||++..     ..+.+.+..++..+..
T Consensus       250 -~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~-----~~l~~~A~~~g~~~a~  323 (452)
T TIGR03452       250 -STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP-----YQLKHVANAEARVVKH  323 (452)
T ss_pred             -CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc-----ccChhHHHHHHHHHHH
Confidence             4689999999999632    222221222322 3478888899999999999996532     2456677788888877


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       324 ni  325 (452)
T TIGR03452       324 NL  325 (452)
T ss_pred             Hh
Confidence            65

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.46  E-value=7e-13  Score=121.60  Aligned_cols=97  Identities=23%  Similarity=0.343  Sum_probs=71.0

Q ss_pred             HhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-cee---ccccccCCC---CCCC
Q psy11185        213 LRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCI---SSDDIFSLE---KPPG  284 (312)
Q Consensus       213 ~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~---~~~~~~~~~---~~~~  284 (312)
                      +...+|++..++ +..++.....+.+.+|  .++.||+||+|||+.|+.|++++... ..+   +..++..+.   ..++
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~  145 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPER  145 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCC
Confidence            345689988764 5566665556666777  67999999999999998877765422 222   233433322   2467


Q ss_pred             eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +++|||+|.+|+|.|..|...+.+|||
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtl  172 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTV  172 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            899999999999999999988888886

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.45  E-value=5.3e-13  Score=124.88  Aligned_cols=144  Identities=22%  Similarity=0.196  Sum_probs=107.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+|+++.+.+.+.|+++ |++++++.+.+++..++..+.+...+++      
T Consensus       179 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~------  251 (460)
T PRK06292        179 VIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK------  251 (460)
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc------
Confidence            5899999999999999999999 5899999999999999999999 9999999999997643322333332331      


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.+|++.|..    .+.+.....+.+ ...+.+|++++|+.|+|||+||++...     ...+.+..++..+..
T Consensus       252 ~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~-----~~~~~A~~qg~~aa~  326 (460)
T PRK06292        252 TETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP-----PLLHEAADEGRIAAE  326 (460)
T ss_pred             eEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc-----cchhHHHHHHHHHHH
Confidence            1468999999999952    212222112222 234778988999999999999965432     345667778887777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       327 ~i  328 (460)
T PRK06292        327 NA  328 (460)
T ss_pred             Hh
Confidence            65

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.45  E-value=3.8e-13  Score=132.93  Aligned_cols=98  Identities=18%  Similarity=0.332  Sum_probs=76.0

Q ss_pred             HHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-ee---ccccccCC---CCCC
Q psy11185        212 MLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CI---SSDDIFSL---EKPP  283 (312)
Q Consensus       212 ~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~---~~~~~~~~---~~~~  283 (312)
                      .+...+|+++.++ +..++.....+.+.+|  ..+.||+||+|||++|..|++||.+.. .+   +..+...+   ...+
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~  145 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRS  145 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcC
Confidence            3456799998775 5666666666777778  679999999999999999999998643 22   33444332   2357


Q ss_pred             CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        284 GKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++++|||||.+|+|+|..|...+.+|+|
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~Vtv  173 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHV  173 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            7899999999999999999988888886

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.45  E-value=7.6e-13  Score=120.64  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=69.0

Q ss_pred             HhcCCceEEec-eeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceecccc---ccCC---CCCCCe
Q psy11185        213 LRDKKVDYLNA-LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD---IFSL---EKPPGK  285 (312)
Q Consensus       213 ~~~~gV~~~~~-~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~---~~~~---~~~~~~  285 (312)
                      +.+.+++++.+ .+..++.....+.+ +|  ..+.||+||+|||+.|..|+++|.+. .++..+   +...   ...+++
T Consensus        68 ~~~~gv~~~~~~~V~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~  143 (377)
T PRK04965         68 AEQFNLRLFPHTWVTDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRDAQR  143 (377)
T ss_pred             HHhCCCEEECCCEEEEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhcCCe
Confidence            45668888754 45556654444554 44  57999999999999999999999754 332222   2211   134678


Q ss_pred             EEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        286 TLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       286 v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+|||+|.+|+|+|..|...+.+|++
T Consensus       144 vvViGgG~~g~e~A~~L~~~g~~Vtl  169 (377)
T PRK04965        144 VLVVGGGLIGTELAMDLCRAGKAVTL  169 (377)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999988888876

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.43  E-value=4.8e-13  Score=132.07  Aligned_cols=97  Identities=21%  Similarity=0.310  Sum_probs=74.9

Q ss_pred             HhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eec---cccccCC---CCCCC
Q psy11185        213 LRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CIS---SDDIFSL---EKPPG  284 (312)
Q Consensus       213 ~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~---~~~~~~~---~~~~~  284 (312)
                      +...+|+++.++ +..++.....+.+.+|  .++.||+||+|||+.|+.|++||.+.. .++   .++...+   ...++
T Consensus        64 ~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k  141 (785)
T TIGR02374        64 YEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFK  141 (785)
T ss_pred             HHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCC
Confidence            456799998764 6667766667777788  689999999999999999999998643 222   2222222   23567


Q ss_pred             eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +++|||||.+|+|+|..|...+.+|+|
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtv  168 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSV  168 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            899999999999999999998888886

>PRK12831 putative oxidoreductase; Provisional

Probab=99.41  E-value=9.4e-13  Score=122.81  Aligned_cols=155  Identities=21%  Similarity=0.298  Sum_probs=98.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...|++|||+||+|+.+|..+.+.|.+++++|....        .|+.+.                         ++.  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi--  183 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE--------PGGVLV-------------------------YGI--  183 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC--------CCCeee-------------------------ecC--
Confidence            457899999999999999999999999999986432        233221                         110  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~  260 (312)
                      +.   +.++.+.+..+           ....+...|+++..++..  . .  .+...+. ...+.||+||+|||+ .|+.
T Consensus       184 p~---~~l~~~~~~~~-----------~~~~~~~~gv~i~~~~~v--~-~--~v~~~~~-~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        184 PE---FRLPKETVVKK-----------EIENIKKLGVKIETNVVV--G-K--TVTIDEL-LEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             CC---ccCCccHHHHH-----------HHHHHHHcCCEEEcCCEE--C-C--cCCHHHH-HhccCCCEEEEeCCCCCCCC
Confidence            00   00111111111           113455678888766532  1 1  1222222 134569999999998 6999


Q ss_pred             CCCCCCCcc-eecccccc--------------CCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH-CISSDDIF--------------SLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~--------------~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+.. .++..+++              .....+++|+|||||++|+++|..+...+.+||+
T Consensus       244 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtl  309 (464)
T PRK12831        244 MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHI  309 (464)
T ss_pred             CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            999997642 22222221              1124578999999999999999988777777886

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.41  E-value=1.4e-12  Score=118.27  Aligned_cols=91  Identities=15%  Similarity=0.234  Sum_probs=67.3

Q ss_pred             HHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceecc---ccccC--------C-
Q psy11185        212 MLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS---DDIFS--------L-  279 (312)
Q Consensus       212 ~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~---~~~~~--------~-  279 (312)
                      .++..+++++.+.+..++...-++.+.+|  +++.||+||+|||+.|..|++||.....++.   +++..        . 
T Consensus        63 ~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (364)
T TIGR03169        63 LARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESAD  140 (364)
T ss_pred             HHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHh
Confidence            34566899988887777766567777788  5799999999999999999999964432211   11111        1 


Q ss_pred             -CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        280 -EKPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       280 -~~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                       ...+++++|||+|.+|+|.|..|..
T Consensus       141 ~~~~~~~vvVvG~G~~g~E~A~~l~~  166 (364)
T TIGR03169       141 APPGTKRLAVVGGGAAGVEIALALRR  166 (364)
T ss_pred             cCCCCceEEEECCCHHHHHHHHHHHH
Confidence             1235689999999999999988874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0404|consensus

Probab=99.40  E-value=1.6e-12  Score=105.20  Aligned_cols=171  Identities=15%  Similarity=0.156  Sum_probs=111.0

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      .++.-.++|||.||++..+|.++.+...+.+++|-.+..+.    +.|+.....-                  +..+|. 
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i----~pGGQLtTTT------------------~veNfP-   61 (322)
T KOG0404|consen    5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGI----APGGQLTTTT------------------DVENFP-   61 (322)
T ss_pred             ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCc----CCCceeeeee------------------ccccCC-
Confidence            45566899999999999999999998888899987553221    1222111110                  011111 


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      .+    +.-+....+...+           ..+..+.|.+++..++...+  ..-+++.++.   +.+.+|+||+|||+.
T Consensus        62 GF----Pdgi~G~~l~d~m-----------rkqs~r~Gt~i~tEtVskv~~sskpF~l~td~---~~v~~~avI~atGAs  123 (322)
T KOG0404|consen   62 GF----PDGITGPELMDKM-----------RKQSERFGTEIITETVSKVDLSSKPFKLWTDA---RPVTADAVILATGAS  123 (322)
T ss_pred             CC----CcccccHHHHHHH-----------HHHHHhhcceeeeeehhhccccCCCeEEEecC---CceeeeeEEEecccc
Confidence            11    1122333333333           33445667777776654443  3345665544   488999999999999


Q ss_pred             CCCCCCCCC-Cc-ce----eccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGA-KE-HC----ISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~-~~-~~----~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+...+||. +. |+    ..+.-++..  .+.+|-.+|||||.||+|.|.+|...+++|++
T Consensus       124 AkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyi  185 (322)
T KOG0404|consen  124 AKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYI  185 (322)
T ss_pred             eeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEE
Confidence            988888887 33 31    122222222  36778899999999999999999999999986

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.40  E-value=2.7e-12  Score=126.86  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=108.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+ .+|+++.+.+.+.|++.||++++++.++++..+ +....+.+.++      
T Consensus       150 ~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG------  222 (785)
T TIGR02374       150 LLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDG------  222 (785)
T ss_pred             HHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCC------
Confidence            4799999999999999999998 57775 589999999999999999999999999988743 22245667665      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                        ..+++|.||++.|.. ...++..+ ...+ +.+++|..++|+.|+|||+||++...+. .......+..++..+..+.
T Consensus       223 --~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~-~~gl~~~a~~qa~vaA~ni  298 (785)
T TIGR02374       223 --SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGR-VYGLVAPLYEQAKVLADHI  298 (785)
T ss_pred             --CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCc-ccccHHHHHHHHHHHHHHh
Confidence              578999999999953 22333221 1222 3477888899999999999997655432 2223344566777777665

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.40  E-value=2.1e-12  Score=120.03  Aligned_cols=121  Identities=24%  Similarity=0.299  Sum_probs=93.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.++ +.+.+. .++       
T Consensus       167 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v~v~-~~g-------  237 (438)
T PRK07251        167 NIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQVLVV-TED-------  237 (438)
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEEEEE-ECC-------
Confidence            5899999999999999999999 589999999999999999999999999999999997533 222222 222       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcc
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                       .++++|.+|++.|...    +.+.......+. ..+.+|..++|+.++||++||++
T Consensus       238 -~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~  293 (438)
T PRK07251        238 -ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN  293 (438)
T ss_pred             -eEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence             4689999999999632    222211112222 34778888999999999999965

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.39  E-value=2.8e-12  Score=120.04  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=107.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++.+.+++..+ +.+.+...++.      
T Consensus       180 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~v~~~~g~------  252 (461)
T TIGR01350       180 VIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVVYENKGGE------  252 (461)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEEEEEeCCc------
Confidence            4799999999999999999999 589999999999999999999999999999999987643 32444443331      


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ...+++|.+|++.|...    +.+.......+. ..+.+|+.++++.|+||++||++...     ...+.+..++..+..
T Consensus       253 ~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~-----~~~~~A~~~g~~aa~  327 (461)
T TIGR01350       253 TETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP-----MLAHVASHEGIVAAE  327 (461)
T ss_pred             EEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHH
Confidence            03688999999999532    112222122222 34777888899999999999965422     355667777777776


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       328 ~i  329 (461)
T TIGR01350       328 NI  329 (461)
T ss_pred             HH
Confidence            65

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.39  E-value=4e-12  Score=117.54  Aligned_cols=152  Identities=20%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..++||||+|.+|+.++..+...+.+++++++.....            ..++               +.. ...+    
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~------------~~~~---------------l~~-~~~g----   57 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML------------FTPL---------------LPQ-TTTG----   57 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc------------hhhh---------------HHH-hccc----
Confidence            4589999999999999988865556788988632100            0000               000 0001    


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCe--EEEEe--------cCCCeEEEEcCeEEE
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHS--VEATM--------KNGEKKTLTAENILI  252 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~--~~v~~--------~~G~~~~i~ad~vVl  252 (312)
                           ..+.+.+..           .+...+...+++++.+.+..++...  +.+..        .+|  .++.||+||+
T Consensus        58 -----~~~~~~~~~-----------~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LVi  119 (424)
T PTZ00318         58 -----TLEFRSICE-----------PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVV  119 (424)
T ss_pred             -----CCChHHhHH-----------HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEE
Confidence                 111111111           1223345567889888877776543  44421        344  6899999999


Q ss_pred             ccCCCCCCCCCCCCCcceecccccc---CC--------------------CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        253 ATGGRPNYPDIPGAKEHCISSDDIF---SL--------------------EKPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       253 AtG~~p~~p~~~g~~~~~~~~~~~~---~~--------------------~~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      |||+.|..|++||..++.++...+.   .+                    ....++++|||||.+|+|.|.+|..
T Consensus       120 AtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~  194 (424)
T PTZ00318        120 AHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD  194 (424)
T ss_pred             CCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence            9999999999999865422211111   00                    0112489999999999999988764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.39  E-value=4e-12  Score=118.45  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|+++++ +++|+ .+++++.+.+.+.|++.||+++++++++++..+ +....+.. ++      
T Consensus       159 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~~v~~-~~------  230 (444)
T PRK09564        159 FIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGE-DKVEGVVT-DK------  230 (444)
T ss_pred             HHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC-CcEEEEEe-CC------
Confidence            4899999999999999999998 57886 589999999999999999999999999998642 22112222 22      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGE  169 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~  169 (312)
                        ..+++|.+|++.|.. ........ .+.+ ...+.+|+.++|+.++|||+|||+......     ..+..+.+..+++
T Consensus       231 --~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~  308 (444)
T PRK09564        231 --GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR  308 (444)
T ss_pred             --CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence              358999999999963 22222111 2222 234778888899999999999976543211     1245667888888


Q ss_pred             HHHHHH
Q psy11185        170 AIKDAV  175 (312)
Q Consensus       170 ~~~~~~  175 (312)
                      .+..+.
T Consensus       309 ~~a~ni  314 (444)
T PRK09564        309 MVGENL  314 (444)
T ss_pred             HHHHHh
Confidence            887765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.39  E-value=2e-12  Score=120.41  Aligned_cols=99  Identities=22%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             HhcCCceEEec-eeEEeeC--CeEEEEe-cCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-ceecccc---ccCC-----
Q psy11185        213 LRDKKVDYLNA-LGKFIDQ--HSVEATM-KNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDD---IFSL-----  279 (312)
Q Consensus       213 ~~~~gV~~~~~-~~~~~~~--~~~~v~~-~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~~~~~---~~~~-----  279 (312)
                      +...++++..+ .+..++.  ..+.++. .+|+...+.||+||+|||+.|..|+++|.+. ..++...   ...+     
T Consensus        66 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  145 (444)
T PRK09564         66 FIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLK  145 (444)
T ss_pred             HHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh
Confidence            45668888644 4555543  4455543 2352333449999999999999999998753 2332222   1111     


Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ...+++|+|||+|.+|+|.+..+...+.+|++
T Consensus       146 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  177 (444)
T PRK09564        146 DEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRI  177 (444)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence            13468999999999999999998888888876

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.38  E-value=3.9e-12  Score=127.02  Aligned_cols=152  Identities=24%  Similarity=0.326  Sum_probs=98.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+++|..|.+.|.+++++|+...        .|+...                         ++  ++
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~--------~GG~l~-------------------------yG--IP  350 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD--------LGGVLR-------------------------YG--IP  350 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC--------CCceEE-------------------------cc--CC
Confidence            56899999999999999999999999999997542        343211                         11  11


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p  261 (312)
                      .   ++.+.+.+.+            ....+...||++..+....     ..++.++.  ....||+||+|||+ .|+.+
T Consensus       351 ~---~rlp~~vi~~------------~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l  408 (944)
T PRK12779        351 E---FRLPNQLIDD------------VVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFM  408 (944)
T ss_pred             C---CcChHHHHHH------------HHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcC
Confidence            1   1111111111            1134556789887665321     23444444  44579999999998 58889


Q ss_pred             CCCCCCcc-eeccccccC----------------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEH-CISSDDIFS----------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~-~~~~~~~~~----------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+.. .++..+++.                ....+++|+|||||++|+++|..+...+.+|++
T Consensus       409 ~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl  475 (944)
T PRK12779        409 NVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTI  475 (944)
T ss_pred             CCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            99997543 222222211                012467899999999999999887776667876

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.37  E-value=4.2e-12  Score=117.92  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             hcCCceEEe-ceeEEeeCC--eEEEEecC-CCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eeccccccCC-----CCCC
Q psy11185        214 RDKKVDYLN-ALGKFIDQH--SVEATMKN-GEKKTLTAENILIATGGRPNYPDIPGAKEH-CISSDDIFSL-----EKPP  283 (312)
Q Consensus       214 ~~~gV~~~~-~~~~~~~~~--~~~v~~~~-G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~~~~~~~~-----~~~~  283 (312)
                      .+.++++.. ..+..++..  .+.+...+ ++..++.||+||+|||+.|+.|++++...+ ..+..+...+     ...+
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  148 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQV  148 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCC
Confidence            456888854 445555543  44444422 334468999999999999988876643222 1111222111     2357


Q ss_pred             CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        284 GKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++++|||||.+|+|.|..+...+.+|+|
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtl  176 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTL  176 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            8999999999999999999988888886

>KOG2495|consensus

Probab=99.36  E-value=3e-12  Score=112.85  Aligned_cols=147  Identities=18%  Similarity=0.261  Sum_probs=107.5

Q ss_pred             hhhhhhhhhHhhhccC--------------CeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC
Q psy11185         18 KVDSGLECAGFLNGLG--------------FNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG   82 (312)
Q Consensus        18 ~~~ig~E~A~~l~~~g--------------~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~   82 (312)
                      +-+.|||+|.+|+..=              .+|||+|. +.+|..||+.+.+|++++|.+.||.+.+++.|..+...   
T Consensus       226 GGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---  302 (491)
T KOG2495|consen  226 GGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---  302 (491)
T ss_pred             CCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc---
Confidence            3458999999998762              58999998 68999999999999999999999999999999988532   


Q ss_pred             eeEEEEeeccccccCCCccccccEEEEecCcchHHHHHHHH----HCCCcEEEEeccC-CCCCCcccccCCcccccccch
Q psy11185         83 KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVI-PSPQGTTWGLGGTCVNVGCIP  157 (312)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~~----~~~~~~~~ve~~~-~~~~~~v~a~Gd~~~~~~~~~  157 (312)
                      .+.+..++|+      .++++|-+++|++|...-.....+.    +.+.+.+.+|+.+ ..+.++|||+|||....+..|
T Consensus       303 ~I~~~~~~g~------~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~  376 (491)
T KOG2495|consen  303 TIHAKTKDGE------IEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKP  376 (491)
T ss_pred             EEEEEcCCCc------eeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCcc
Confidence            2344444332      2689999999999954333333332    2333467777665 568899999999664555443


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy11185        158 KKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       158 ~~~~~~a~~~~~~~~~~~  175 (312)
                        ..+.|.+++..+..+.
T Consensus       377 --tAQVA~QqG~yLAk~f  392 (491)
T KOG2495|consen  377 --TAQVAEQQGAYLAKNF  392 (491)
T ss_pred             --HHHHHHHHHHHHHHHH
Confidence              4556667777666653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.36  E-value=7e-12  Score=88.01  Aligned_cols=72  Identities=29%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeec
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNV   91 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~   91 (312)
                      -.+|+|+|.+|+++|++|||+++ +.+++.+++++++++.+.|++.||++++++.+.+++.++++ +.|++++|
T Consensus         8 G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~g   80 (80)
T PF00070_consen    8 GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred             CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence            36899999999999999999999 58889999999999999999999999999999999988777 66887764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.36  E-value=4e-12  Score=118.27  Aligned_cols=152  Identities=22%  Similarity=0.284  Sum_probs=97.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...+++|||+|++|+.+|..+.+.+.+++++|....        .|+.+.                         ++.  
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~--------~GG~l~-------------------------~gi--  176 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK--------PGGVVT-------------------------YGI--  176 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC--------CCcEee-------------------------ecC--
Confidence            356999999999999999999999999999997432        222110                         110  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~  260 (312)
                      +   ....+.+.+ .           .....+...+|++..+...   .  ..+...+.   ...||+||+|||+ .|+.
T Consensus       177 p---~~~~~~~~~-~-----------~~~~~l~~~gv~~~~~~~v---~--~~v~~~~~---~~~yd~viiAtGa~~p~~  233 (449)
T TIGR01316       177 P---EFRLPKEIV-V-----------TEIKTLKKLGVTFRMNFLV---G--KTATLEEL---FSQYDAVFIGTGAGLPKL  233 (449)
T ss_pred             C---CccCCHHHH-H-----------HHHHHHHhCCcEEEeCCcc---C--CcCCHHHH---HhhCCEEEEeCCCCCCCc
Confidence            0   011111111 0           0112345678998776532   1  12333333   2468999999997 7999


Q ss_pred             CCCCCCCcc-eeccccccC---------------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH-CISSDDIFS---------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~~---------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+.. .++..++..               ....+++|+|||+|++|+|+|..+...+.+||+
T Consensus       234 ~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtl  300 (449)
T TIGR01316       234 MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHC  300 (449)
T ss_pred             CCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            999997532 222222210               113567899999999999999998877777886

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.34  E-value=9.9e-12  Score=115.21  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=106.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCC-CccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVP-LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~-l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|++.|++||++++ +++ .+.+++++.+.+.+.|++.||++++++.+.++..+  +.+ +.+.++      
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~~~g------  217 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVFTSG------  217 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEEcCC------
Confidence            4899999999999999999999 466 47789999999999999999999999999998743  322 445444      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGE  169 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~  169 (312)
                        ..+++|.+|++.|.. .......+ .+.+. ..+.+|+.++|+.|+||++||++......     .....+.+..+++
T Consensus       218 --~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~  295 (427)
T TIGR03385       218 --GVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGR  295 (427)
T ss_pred             --CEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHH
Confidence              468999999999963 22222221 12222 34677888899999999999976542211     1235566778888


Q ss_pred             HHHHHH
Q psy11185        170 AIKDAV  175 (312)
Q Consensus       170 ~~~~~~  175 (312)
                      .+..+.
T Consensus       296 ~~a~ni  301 (427)
T TIGR03385       296 IAGENI  301 (427)
T ss_pred             HHHHHh
Confidence            877765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.32  E-value=1.6e-11  Score=115.10  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=111.2

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC-ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL-RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l-~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .|+|+|..|..+|.+|++++.+ .++ +++|+...+.+++.+.++||++++++..+++.. .+....+.+++|       
T Consensus       156 LGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG-------  227 (793)
T COG1251         156 LGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADG-------  227 (793)
T ss_pred             hhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecCC-------
Confidence            6899999999999999999985 554 678999999999999999999999988887764 333457888887       


Q ss_pred             CccccccEEEEecC-cchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGG-SGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        99 ~~~~~~d~vivg~G-~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                       ..+++|.||++.| +.++.++...--.-++.++++.+++|+.|+|||+|.|+...+.. ..+.-....+.+.+.+..
T Consensus       228 -~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqTsdpdIYAvGEcae~~g~~-yGLVaP~yeq~~v~a~hl  303 (793)
T COG1251         228 -TEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKV-YGLVAPLYEQAKVLADHL  303 (793)
T ss_pred             -CcccceeEEEecccccccHhHHhcCcCcCCCeeecccccccCCCeeehhhHHHhcCcc-ceehhHHHHHHHHHHHHh
Confidence             6789999999999 45666655432222347999999999999999999976665432 223334455566665544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.31  E-value=3e-11  Score=119.56  Aligned_cols=150  Identities=21%  Similarity=0.247  Sum_probs=93.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+.+|..|.+.|.+++++|+...        .|+.+...                           ++
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~--------~GG~lr~~---------------------------IP  583 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN--------AGGVVKNI---------------------------IP  583 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc--------cCcceeee---------------------------cc
Confidence            45899999999999999999999999999997542        23322110                           00


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                         ..+++.+.+.            .....+...||++..++..       .+...+.  ....||+||||||+. |+.+
T Consensus       584 ---~~Rlp~evL~------------~die~l~~~GVe~~~gt~V-------di~le~L--~~~gYDaVILATGA~~~~~l  639 (1019)
T PRK09853        584 ---QFRIPAELIQ------------HDIEFVKAHGVKFEFGCSP-------DLTVEQL--KNEGYDYVVVAIGADKNGGL  639 (1019)
T ss_pred             ---cccccHHHHH------------HHHHHHHHcCCEEEeCcee-------EEEhhhh--eeccCCEEEECcCCCCCCCC
Confidence               0111111110            0113445678988776532       1222333  455699999999986 5556


Q ss_pred             CCCCCCcceecccccc-------CCCCCCCeEEEEcCchhhHHHHHHhhcC--ceeeee
Q psy11185        262 DIPGAKEHCISSDDIF-------SLEKPPGKTLVVGAGYIGKLETWDSNSG--CGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~-------~~~~~~~~v~VvG~G~sa~~~a~~l~~~--~~~V~~  311 (312)
                      +++|.+...++..++.       .....+++|+|||||++|+++|..+...  +++|++
T Consensus       640 ~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTL  698 (1019)
T PRK09853        640 KLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV  698 (1019)
T ss_pred             CCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEE
Confidence            7888753333222111       1124578999999999999988775543  357776

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.31  E-value=1.1e-11  Score=122.49  Aligned_cols=153  Identities=26%  Similarity=0.366  Sum_probs=96.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...+++|||+||+|+.+|..+.+.|.+++++|+...        .|+...                         ++.  
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi--  474 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE--------IGGVLK-------------------------YGI--  474 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC--------CCCeee-------------------------ecC--
Confidence            356899999999999999999999999999997432        222110                         111  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~  260 (312)
                      +.   +..+.. +   +.        .....+...||++..+...  . .  .++.++.  ....||+||+|||+ .|+.
T Consensus       475 p~---~rlp~~-~---~~--------~~~~~l~~~gv~~~~~~~v--~-~--~v~~~~l--~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        475 PE---FRLPKK-I---VD--------VEIENLKKLGVKFETDVIV--G-K--TITIEEL--EEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             CC---CCCCHH-H---HH--------HHHHHHHHCCCEEECCCEE--C-C--cCCHHHH--hhcCCCEEEEeCCCCCCCC
Confidence            00   111111 1   10        1112345678998765532  1 1  1223333  35669999999998 6999


Q ss_pred             CCCCCCCcc-eeccccccC--------------CCCCCCeEEEEcCchhhHHHHHHhhcCcee-eee
Q psy11185        261 PDIPGAKEH-CISSDDIFS--------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGN-VTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~~--------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~-V~~  311 (312)
                      |++||.+.. .++..+++.              ....+++|+|||||++|+++|..+...+.+ ||+
T Consensus       533 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtl  599 (752)
T PRK12778        533 MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTI  599 (752)
T ss_pred             CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            999997643 222222211              113467899999999999988887665554 876

>PRK10262 thioredoxin reductase; Provisional

Probab=99.30  E-value=3.3e-11  Score=107.45  Aligned_cols=130  Identities=14%  Similarity=0.142  Sum_probs=92.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      ++|+|+|..|+++|++||+++++..+. .++.+.+.+.+.|++.||++++++.++++..+..+...+.+.++....  ..
T Consensus       156 ~~g~e~A~~l~~~~~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~--~~  232 (321)
T PRK10262        156 NTAVEEALYLSNIASEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSD--NI  232 (321)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCccC-CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCC--eE
Confidence            689999999999999999999953233 457788889999999999999999999997543232346665432100  01


Q ss_pred             ccccccEEEEecCcch-HHHHHHHHHCCCcEEEEec-----cCCCCCCcccccCCcccc
Q psy11185        100 HKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDY-----VIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~-----~~~~~~~~v~a~Gd~~~~  152 (312)
                      .++++|.|||+.|... ..+.......+...+.++.     +++|+.|+|||+||++..
T Consensus       233 ~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~  291 (321)
T PRK10262        233 ESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH  291 (321)
T ss_pred             EEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCC
Confidence            4689999999999632 2222212223334566675     678999999999996543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.28  E-value=3.6e-11  Score=109.12  Aligned_cols=143  Identities=15%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             hhhhhhhHhhhc----cC--CeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc
Q psy11185         20 DSGLECAGFLNG----LG--FNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE   93 (312)
Q Consensus        20 ~ig~E~A~~l~~----~g--~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~   93 (312)
                      .+|+|+|..|++    .|  .+|||+..+++|+.+++++++.+.+.|++.||++++++.+.+++.   +  .+.+.++  
T Consensus       155 ~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~--~v~~~~g--  227 (364)
T TIGR03169       155 AAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G--ALILADG--  227 (364)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C--eEEeCCC--
Confidence            479999999975    34  589999446888889999999999999999999999999998852   2  4666554  


Q ss_pred             cccCCCccccccEEEEecCcchHHHHHHH-HHC-CCcEEEEeccCCC-CCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         94 VRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAH-GRKVIVLDYVIPS-PQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        94 ~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~-~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                            .++++|.+|++.|.......... ... ....+.+|..+++ +.++||++||++........+....+..++..
T Consensus       228 ------~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~  301 (364)
T TIGR03169       228 ------RTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPI  301 (364)
T ss_pred             ------CEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHH
Confidence                  57899999999995432211111 111 1235777777776 99999999997654322112333445556655


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       302 ~a~ni  306 (364)
T TIGR03169       302 LAANL  306 (364)
T ss_pred             HHHHH
Confidence            55443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1336|consensus

Probab=99.25  E-value=1.9e-11  Score=109.51  Aligned_cols=125  Identities=20%  Similarity=0.227  Sum_probs=100.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~   96 (312)
                      .||||+|..|..-+++||+|++ ..+|+ .|-+.+++.+++.+++.||++++++.+.+++.+.++. ..|.+.++     
T Consensus       223 ~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg-----  297 (478)
T KOG1336|consen  223 FIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG-----  297 (478)
T ss_pred             HHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC-----
Confidence            4899999999999999999999 57776 5889999999999999999999999999998776554 47788777     


Q ss_pred             CCCccccccEEEEecCcchHHH--HHHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185         97 DNTHKYDYDLLVLGGGSGGLAA--AKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~gl~~--a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                         .++++|+||+|.|.....-  ...........+-++...+++.|+|||+||+.+.
T Consensus       298 ---~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~f  352 (478)
T KOG1336|consen  298 ---KTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATF  352 (478)
T ss_pred             ---CEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeec
Confidence               6789999999999522211  1111112223588899999999999999997654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.24  E-value=1.2e-10  Score=102.56  Aligned_cols=191  Identities=14%  Similarity=0.026  Sum_probs=106.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCCCCC-c---------ccccCCcccccccchhhHHHHHHHHHH
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQG-T---------TWGLGGTCVNVGCIPKKLMHQAALLGE  169 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~~~~-~---------v~a~Gd~~~~~~~~~~~~~~~a~~~~~  169 (312)
                      ....|+|.||.||..|++|..+.+.+ .+.+.+|+...-++. +         +-.+-|.++-.+...+-.+.....+..
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~   82 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG   82 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence            44689999999999999999887765 457888876655543 2         122223222222111111222222222


Q ss_pred             HHHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee-CCeEEEEecCCCeEEEEcC
Q psy11185        170 AIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID-QHSVEATMKNGEKKTLTAE  248 (312)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-~~~~~v~~~~G~~~~i~ad  248 (312)
                      .+.....+.       ...+...++..|+.+.+..+.      .-+.|-++..-.....+ .....+.+.++  .++.|+
T Consensus        83 RLy~Fl~~e-------~f~i~R~Ey~dY~~Waa~~l~------~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar  147 (436)
T COG3486          83 RLYEFLNYE-------TFHIPRREYNDYCQWAASQLP------SLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRAR  147 (436)
T ss_pred             hHhhhhhhh-------cccccHHHHHHHHHHHHhhCC------ccccCCeeccccccCCcceeEEEEEcCCC--cEEEee
Confidence            222211111       344555555555555444432      11112222111100001 11223555666  599999


Q ss_pred             eEEEccCCCCCCCCCC-CCCc-ceeccccccCCC--CCCC-eEEEEcCchhhHHHHHHhhcCc
Q psy11185        249 NILIATGGRPNYPDIP-GAKE-HCISSDDIFSLE--KPPG-KTLVVGAGYIGKLETWDSNSGC  306 (312)
Q Consensus       249 ~vVlAtG~~p~~p~~~-g~~~-~~~~~~~~~~~~--~~~~-~v~VvG~G~sa~~~a~~l~~~~  306 (312)
                      .||+++|.+|.+|+.. .+.. .++|+.++....  ...+ +|+|||||+||.|+...|....
T Consensus       148 ~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~  210 (436)
T COG3486         148 NLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQ  210 (436)
T ss_pred             eEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCC
Confidence            9999999999998733 4433 467777766432  2334 4999999999999988876653

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.24  E-value=1e-10  Score=116.33  Aligned_cols=150  Identities=19%  Similarity=0.282  Sum_probs=92.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+++|..|.+.|.+++++|+...        .|+.+...                           .+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~--------lGG~l~~~---------------------------IP  581 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK--------PGGVVKNI---------------------------IP  581 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc--------cCceeeec---------------------------cc
Confidence            46899999999999999999999999999997542        34322110                           00


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                         ..+...+.+.            .....+...||++..+...     .++  ..+.  ....||+||+|||++ ++.+
T Consensus       582 ---~~rlp~e~l~------------~~ie~l~~~GVe~~~g~~~-----d~~--ve~l--~~~gYDaVIIATGA~~~~~l  637 (1012)
T TIGR03315       582 ---EFRISAESIQ------------KDIELVKFHGVEFKYGCSP-----DLT--VAEL--KNQGYKYVILAIGAWKHGPL  637 (1012)
T ss_pred             ---ccCCCHHHHH------------HHHHHHHhcCcEEEEeccc-----ceE--hhhh--hcccccEEEECCCCCCCCCC
Confidence               0111111110            0112345668888765321     111  1222  345689999999986 4556


Q ss_pred             CCCCCCcceecccccc-------CCCCCCCeEEEEcCchhhHHHHHHhhc--Cceeeee
Q psy11185        262 DIPGAKEHCISSDDIF-------SLEKPPGKTLVVGAGYIGKLETWDSNS--GCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~-------~~~~~~~~v~VvG~G~sa~~~a~~l~~--~~~~V~~  311 (312)
                      .++|.....++..++.       .....+++|+|||||++|+++|..+..  ++++|++
T Consensus       638 ~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtL  696 (1012)
T TIGR03315       638 RLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV  696 (1012)
T ss_pred             CcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEE
Confidence            7887644333222221       112467899999999999998877653  5567776

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1336|consensus

Probab=99.24  E-value=3.7e-11  Score=107.72  Aligned_cols=98  Identities=27%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             HHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc----eeccccccC---CCCCC
Q psy11185        212 MLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH----CISSDDIFS---LEKPP  283 (312)
Q Consensus       212 ~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~----~~~~~~~~~---~~~~~  283 (312)
                      ..+..+|+++.++ +..++-..-++.+.+|  +++.++++|||||+.|+.|++||....    ....++...   .-...
T Consensus       136 ~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~  213 (478)
T KOG1336|consen  136 FYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLG  213 (478)
T ss_pred             hHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccC
Confidence            4578899997776 6667777778888999  899999999999999999999999643    223333322   22346


Q ss_pred             CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        284 GKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++|+++|+|..|+|.+.+|...+.+||+
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~  241 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTV  241 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEE
Confidence            6799999999999999999999999987

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.23  E-value=2.2e-10  Score=101.08  Aligned_cols=145  Identities=20%  Similarity=0.299  Sum_probs=92.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHH-HHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM-HQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .+|++|||+||+|+.+|..+.+.|.+|+++|.......+=..+-|+.|+.++.-....+ ......++.+....      
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal------   76 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSAL------   76 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHH------
Confidence            47999999999999999999999999999998877666666667777876553222111 11111111111100      


Q ss_pred             CCccccccCHHHHHHHHHH---------------H---HHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEecCC
Q psy11185        182 PNVKSVQHNWANLREAVQN---------------H---VKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATMKNG  240 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~~~G  240 (312)
                           ..++...+..++..               .   ....-..+..++++.||++...+ ...++  ...+.+.+++|
T Consensus        77 -----~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g  151 (408)
T COG2081          77 -----ARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG  151 (408)
T ss_pred             -----HhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC
Confidence                 11122222222211               1   23344456678889999997776 33333  34788999999


Q ss_pred             CeEEEEcCeEEEccC--CCCCC
Q psy11185        241 EKKTLTAENILIATG--GRPNY  260 (312)
Q Consensus       241 ~~~~i~ad~vVlAtG--~~p~~  260 (312)
                        .++.+|+||+|||  ++|+.
T Consensus       152 --~~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         152 --ETVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             --CEEEccEEEEecCCcCCCCC
Confidence              5899999999999  55643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.23  E-value=6.6e-11  Score=110.59  Aligned_cols=152  Identities=22%  Similarity=0.269  Sum_probs=93.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...+++|||+|++|+.+|..+.+.+.+++++|+...        .|+...                         ++.  
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~--------~gG~l~-------------------------~gi--  183 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK--------AGGLLR-------------------------YGI--  183 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC--------CCcEee-------------------------ccC--
Confidence            457899999999999999999999999999987532        122100                         010  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~  260 (312)
                      +.   .... ..+.           ......+...++++..++...   .  .+...+.   .+.||+||+|||+. |+.
T Consensus       184 p~---~~~~-~~~~-----------~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~  240 (457)
T PRK11749        184 PE---FRLP-KDIV-----------DREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRF  240 (457)
T ss_pred             CC---ccCC-HHHH-----------HHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCC
Confidence            00   0001 0111           111233556688887665421   1  1222333   26799999999985 777


Q ss_pred             CCCCCCCcc-eeccccccC---------CCCCCCeEEEEcCchhhHHHHHHhhcC-ceeeee
Q psy11185        261 PDIPGAKEH-CISSDDIFS---------LEKPPGKTLVVGAGYIGKLETWDSNSG-CGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~l~~~-~~~V~~  311 (312)
                      ++++|.+.. .++..++..         ....+++|+|||+|++|+|+|..+... +++|++
T Consensus       241 ~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtl  302 (457)
T PRK11749        241 LGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTI  302 (457)
T ss_pred             CCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            888887532 222212111         112578999999999999999887655 447876

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.23  E-value=5.2e-11  Score=107.15  Aligned_cols=154  Identities=24%  Similarity=0.322  Sum_probs=101.0

Q ss_pred             ccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+||+|+|.+|+.++..+....  .+++++|++.....                .+.+..            ...+   
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~----------------~plL~e------------va~g---   52 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF----------------TPLLYE------------VATG---   52 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc----------------chhhhh------------hhcC---
Confidence            36899999999999999998754  67899987432100                000000            0001   


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                            .++...           ....+...+... ++.++.+++..++...-+|.+.++  ..+.||+||+|+|+.+..
T Consensus        53 ------~l~~~~-----------i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~  113 (405)
T COG1252          53 ------TLSESE-----------IAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADL--GEISYDYLVVALGSETNY  113 (405)
T ss_pred             ------CCChhh-----------eeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCC--ccccccEEEEecCCcCCc
Confidence                  011111           111122334434 499999998888887777777775  689999999999999999


Q ss_pred             CCCCCCCcceeccc---cccC-----------CCCCCC-----eEEEEcCchhhHHHHHHhhcCce
Q psy11185        261 PDIPGAKEHCISSD---DIFS-----------LEKPPG-----KTLVVGAGYIGKLETWDSNSGCG  307 (312)
Q Consensus       261 p~~~g~~~~~~~~~---~~~~-----------~~~~~~-----~v~VvG~G~sa~~~a~~l~~~~~  307 (312)
                      +.+||..++.+..+   +...           .....+     .++|+|||++|+|.|.+|.....
T Consensus       114 fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~  179 (405)
T COG1252         114 FGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLH  179 (405)
T ss_pred             CCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHH
Confidence            99999877644322   2211           111222     59999999999999988776543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.22  E-value=5.4e-11  Score=119.92  Aligned_cols=153  Identities=20%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+++|..|.+.|.+++++|....        .|+...                         ++  ++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~--------~GG~l~-------------------------~g--ip  474 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV--------VGGVLQ-------------------------YG--IP  474 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC--------Ccceee-------------------------cc--CC
Confidence            46899999999999999999999999999996432        222110                         11  01


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p  261 (312)
                      .   .+...+ +           .......+...||++..+...  + ..+++..-.   ....||+||||||+ .|+.|
T Consensus       475 ~---~rl~~e-~-----------~~~~~~~l~~~Gv~~~~~~~v--g-~~~~~~~l~---~~~~yDaViIATGa~~pr~l  533 (1006)
T PRK12775        475 S---FRLPRD-I-----------IDREVQRLVDIGVKIETNKVI--G-KTFTVPQLM---NDKGFDAVFLGVGAGAPTFL  533 (1006)
T ss_pred             c---cCCCHH-H-----------HHHHHHHHHHCCCEEEeCCcc--C-CccCHHHHh---hccCCCEEEEecCCCCCCCC
Confidence            0   111111 1           111223456678998766432  1 112221100   12458999999998 58989


Q ss_pred             CCCCCCcc-eecccccc---------------CCCCCCCeEEEEcCchhhHHHHHHhh-cCceeeee
Q psy11185        262 DIPGAKEH-CISSDDIF---------------SLEKPPGKTLVVGAGYIGKLETWDSN-SGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~-~~~~~~~~---------------~~~~~~~~v~VvG~G~sa~~~a~~l~-~~~~~V~~  311 (312)
                      ++||.+.. .++..+++               .....+++|+|||||++|++++..+. .+++.|++
T Consensus       534 ~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vti  600 (1006)
T PRK12775        534 GIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRC  600 (1006)
T ss_pred             CCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            99997532 22222211               11235789999999999998877754 45666764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.22  E-value=2.4e-10  Score=115.64  Aligned_cols=162  Identities=22%  Similarity=0.205  Sum_probs=96.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+||+|+.+|..+.+.+.+++++|+...        .|+......                      .  ..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~--------~GG~~~~~~----------------------~--~~  209 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE--------AGGSLLSEA----------------------E--TI  209 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC--------CCCeeeccc----------------------c--cc
Confidence            468999999999999999999999999999997543        222111000                      0  00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEece-eEEeeCC-eE-EEEe--------cC----CCeEEE
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNAL-GKFIDQH-SV-EATM--------KN----GEKKTL  245 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~-~~~~~~~-~~-~v~~--------~~----G~~~~i  245 (312)
                      +     ..+...+   .        ..+..++... ++++..++ +..+... .+ .+..        .+    +....+
T Consensus       210 ~-----g~~~~~~---~--------~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i  273 (985)
T TIGR01372       210 D-----GKPAADW---A--------AATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRI  273 (985)
T ss_pred             C-----CccHHHH---H--------HHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEE
Confidence            0     0011111   0        1112233333 47776543 3322211 11 1100        01    112378


Q ss_pred             EcCeEEEccCCCCCCCCCCCCCcc-eecccc---ccC-CC-CCCCeEEEEcCchhhHHHHHHhhcCc-eeeee
Q psy11185        246 TAENILIATGGRPNYPDIPGAKEH-CISSDD---IFS-LE-KPPGKTLVVGAGYIGKLETWDSNSGC-GNVTI  311 (312)
Q Consensus       246 ~ad~vVlAtG~~p~~p~~~g~~~~-~~~~~~---~~~-~~-~~~~~v~VvG~G~sa~~~a~~l~~~~-~~V~~  311 (312)
                      .||.||||||+.++.|+++|.+.. .++...   +.. .. ..+++|+|||+|.+|++.|..|...+ +.|+|
T Consensus       274 ~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v  346 (985)
T TIGR01372       274 RAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI  346 (985)
T ss_pred             EcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            999999999999999999997653 222221   211 11 24678999999999999999987766 44554

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.20  E-value=2e-10  Score=103.73  Aligned_cols=160  Identities=24%  Similarity=0.246  Sum_probs=91.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...+++|||+|++|+.+|..+.+.+.+++++++...        .|+....                         +  .
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--------~gg~~~~-------------------------~--~   61 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE--------PGGLMLF-------------------------G--I   61 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC--------CCceeee-------------------------c--C
Confidence            456899999999999999999999999999987432        1211000                         0  0


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee-------CCeEEEEecCCCeEEEEcCeEEEcc
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID-------QHSVEATMKNGEKKTLTAENILIAT  254 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-------~~~~~v~~~~G~~~~i~ad~vVlAt  254 (312)
                      +   ....+.+.+.           . ....+...++++..++.....       ...+..+..+.+...+.||+||+||
T Consensus        62 ~---~~~~~~~~~~-----------~-~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAt  126 (352)
T PRK12770         62 P---EFRIPIERVR-----------E-GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIAT  126 (352)
T ss_pred             c---ccccCHHHHH-----------H-HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEe
Confidence            0   0001111111           0 112234447777655432111       0111111111111247899999999


Q ss_pred             CC-CCCCCCCCCCCcc-eecccc-----------ccCCC----CCCCeEEEEcCchhhHHHHHHhhcCce-eeee
Q psy11185        255 GG-RPNYPDIPGAKEH-CISSDD-----------IFSLE----KPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI  311 (312)
Q Consensus       255 G~-~p~~p~~~g~~~~-~~~~~~-----------~~~~~----~~~~~v~VvG~G~sa~~~a~~l~~~~~-~V~~  311 (312)
                      |+ .|+.|++||.+.. ..++.+           +....    ..+++++|||+|++|+|+|..+...+. +|+|
T Consensus       127 Gs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtv  201 (352)
T PRK12770        127 GTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYL  201 (352)
T ss_pred             CCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            98 4788899987542 222211           11111    225789999999999999888765444 4776

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.17  E-value=2.7e-10  Score=107.86  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=86.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      ++|+|+|..|+++|.+|||+++. +++.  +    ..+.+.+++ .||++++++.+++++.+++....+.+.++..+.  
T Consensus       362 ~~g~E~A~~L~~~g~~Vtli~~~~~l~~--~----~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~--  433 (515)
T TIGR03140       362 NSGIEAAIDLAGIVRHVTVLEFADELKA--D----KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE--  433 (515)
T ss_pred             HHHHHHHHHHHhcCcEEEEEEeCCcCCh--h----HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc--
Confidence            58999999999999999999984 4432  2    345666665 699999999999987542222246665542211  


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                       ...+++|.||++.|... ......+...+. ..+.+|..++|+.|+|||+||++..
T Consensus       434 -~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~  489 (515)
T TIGR03140       434 -EKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTV  489 (515)
T ss_pred             -EEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCC
Confidence             14689999999999632 222222233322 3588888999999999999997643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.16  E-value=3.8e-10  Score=105.80  Aligned_cols=152  Identities=23%  Similarity=0.288  Sum_probs=92.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...+++|||+|++|+.+|..+.+.+.+++++|+...        .|+...                         ++  +
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~--------~GG~l~-------------------------~g--i  186 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR--------IGGLLR-------------------------YG--I  186 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC--------CCceee-------------------------ec--C
Confidence            346899999999999999999999999999997532        122100                         11  0


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~  260 (312)
                      +   .+.......            ......+...|+++..++....+     +.. +.  ....||+||+|||+. |+.
T Consensus       187 p---~~~~~~~~~------------~~~~~~~~~~gv~~~~~~~v~~~-----~~~-~~--~~~~~d~vvlAtGa~~~~~  243 (471)
T PRK12810        187 P---DFKLEKEVI------------DRRIELMEAEGIEFRTNVEVGKD-----ITA-EE--LLAEYDAVFLGTGAYKPRD  243 (471)
T ss_pred             C---cccCCHHHH------------HHHHHHHHhCCcEEEeCCEECCc-----CCH-HH--HHhhCCEEEEecCCCCCCc
Confidence            0   011111100            00112355678888766533111     111 11  234699999999986 777


Q ss_pred             CCCCCCCcce-eccccc--------------cCCCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        261 PDIPGAKEHC-ISSDDI--------------FSLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~-~~~~~~--------------~~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      ++++|.+... ++..++              ......+++|+|||+|++|+|+|.. +..++++|++
T Consensus       244 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~  310 (471)
T PRK12810        244 LGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQ  310 (471)
T ss_pred             CCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            8899875431 221110              0123457899999999999998864 6666667764

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.15  E-value=5e-10  Score=104.22  Aligned_cols=146  Identities=15%  Similarity=0.225  Sum_probs=86.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHH--CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA--HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~--~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...+++|||+||+|+.+|..|.+  .+.++.++|+...        .|+...                         ++.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~--------pgGlvr-------------------------~gv   71 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT--------PFGLVR-------------------------SGV   71 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC--------CcceEe-------------------------ecc
Confidence            35689999999999999999986  6788999997542        222111                         110


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-  258 (312)
                              .+++.........    +.    ..+...++++......  .   ..++.++-   ...||+||+|||+.+ 
T Consensus        72 --------aP~~~~~k~v~~~----~~----~~~~~~~v~~~~nv~v--g---~dvtl~~L---~~~yDaVIlAtGa~~~  127 (491)
T PLN02852         72 --------APDHPETKNVTNQ----FS----RVATDDRVSFFGNVTL--G---RDVSLSEL---RDLYHVVVLAYGAESD  127 (491)
T ss_pred             --------CCCcchhHHHHHH----HH----HHHHHCCeEEEcCEEE--C---ccccHHHH---hhhCCEEEEecCCCCC
Confidence                    0111111111111    11    1233456776543211  1   11222332   236999999999875 


Q ss_pred             CCCCCCCCCcc-eecccccc----------CC---CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        259 NYPDIPGAKEH-CISSDDIF----------SL---EKPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       259 ~~p~~~g~~~~-~~~~~~~~----------~~---~~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      +.+++||.+.. .++..++.          ..   ...+++|+|||+|++|+++|..|..
T Consensus       128 ~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~  187 (491)
T PLN02852        128 RRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLR  187 (491)
T ss_pred             CCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHh
Confidence            67889987542 22222221          11   1246789999999999998888765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.15  E-value=5.8e-10  Score=103.89  Aligned_cols=145  Identities=17%  Similarity=0.250  Sum_probs=93.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-C-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeec-----
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-V-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNV-----   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~-----   91 (312)
                      ++|+|+|..|.++|++||+++++ + .++....     ..+.++++||++++++.+.++..+.++.+ .+.+..-     
T Consensus       282 ~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~-----~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  356 (449)
T TIGR01316       282 NTAVDSARTALRLGAEVHCLYRRTREDMTARVE-----EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ  356 (449)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH-----HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCc
Confidence            58999999999999999999984 3 3333322     24567889999999999999876444433 3444310     


Q ss_pred             -cccc------cCCCccccccEEEEecCcch-HHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHH
Q psy11185         92 -AEVR------QDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM  161 (312)
Q Consensus        92 -~~~~------~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~  161 (312)
                       ..++      .+....+++|.||++.|... ..+...+ .+.+ ...+.+|..++|+.|+||++||++...     ...
T Consensus       357 ~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~-----~~v  431 (449)
T TIGR01316       357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA-----ATV  431 (449)
T ss_pred             CCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc-----HHH
Confidence             0010      11113689999999999632 2211111 1222 234777888899999999999965432     344


Q ss_pred             HHHHHHHHHHHHH
Q psy11185        162 HQAALLGEAIKDA  174 (312)
Q Consensus       162 ~~a~~~~~~~~~~  174 (312)
                      ..+..+++....+
T Consensus       432 ~~Ai~~G~~AA~~  444 (449)
T TIGR01316       432 IRAMGQGKRAAKS  444 (449)
T ss_pred             HHHHHHHHHHHHH
Confidence            5566666655544

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.12  E-value=7.6e-10  Score=103.95  Aligned_cols=151  Identities=22%  Similarity=0.316  Sum_probs=92.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+|++|+.+|..+.+.+.++++++....        .|+.+.                         ++.  +
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~--------~gG~l~-------------------------~gi--p  187 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR--------CGGLLM-------------------------YGI--P  187 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC--------CCceee-------------------------ccC--C
Confidence            35899999999999999999999999999986432        222110                         110  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                      .   ...+...+.            .....+...||++..++....     .+.. ++  ....||+||+|||+. |+.|
T Consensus       188 ~---~~~~~~~~~------------~~~~~~~~~Gv~~~~~~~v~~-----~~~~-~~--~~~~~d~VilAtGa~~~~~l  244 (485)
T TIGR01317       188 N---MKLDKAIVD------------RRIDLLSAEGIDFVTNTEIGV-----DISA-DE--LKEQFDAVVLAGGATKPRDL  244 (485)
T ss_pred             C---ccCCHHHHH------------HHHHHHHhCCCEEECCCEeCC-----ccCH-HH--HHhhCCEEEEccCCCCCCcC
Confidence            0   111111100            011335667898876653210     1111 11  245699999999987 8889


Q ss_pred             CCCCCCcce-ecccc-------------c---cCCCCCCCeEEEEcCchhhHHHH-HHhhcCceeeee
Q psy11185        262 DIPGAKEHC-ISSDD-------------I---FSLEKPPGKTLVVGAGYIGKLET-WDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~-~~~~~-------------~---~~~~~~~~~v~VvG~G~sa~~~a-~~l~~~~~~V~~  311 (312)
                      +++|.+... ++.-.             .   ......+++|+|||||++|++++ ..+..+++.|++
T Consensus       245 ~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~v  312 (485)
T TIGR01317       245 PIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQ  312 (485)
T ss_pred             CCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            999875421 11110             0   01123567899999999999864 557777778875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.10  E-value=5.6e-10  Score=108.40  Aligned_cols=151  Identities=24%  Similarity=0.313  Sum_probs=91.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+|++|+.+|..+.+.+.+++++|....        .|+...                         ++.  +
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~--------~GG~l~-------------------------~gi--p  237 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ--------AGGMMR-------------------------YGI--P  237 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC--------CCceee-------------------------ecC--C
Confidence            45899999999999999999999999999997542        232110                         110  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-CCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-~~p  261 (312)
                      .   .... ..+..+           ....+...|+++..++...     ..+...+.   ...||+||+|||+.+ +.+
T Consensus       238 ~---~~~~-~~~~~~-----------~~~~l~~~Gv~i~~~~~v~-----~dv~~~~~---~~~~DaVilAtGa~~~~~~  294 (652)
T PRK12814        238 R---FRLP-ESVIDA-----------DIAPLRAMGAEFRFNTVFG-----RDITLEEL---QKEFDAVLLAVGAQKASKM  294 (652)
T ss_pred             C---CCCC-HHHHHH-----------HHHHHHHcCCEEEeCCccc-----CccCHHHH---HhhcCEEEEEcCCCCCCCC
Confidence            0   0100 111100           1123456688876554321     11222222   234999999999875 567


Q ss_pred             CCCCCCcce-ecccccc------CCCCCCCeEEEEcCchhhHHHHHHhhc-Cceeeee
Q psy11185        262 DIPGAKEHC-ISSDDIF------SLEKPPGKTLVVGAGYIGKLETWDSNS-GCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~-~~~~~~~------~~~~~~~~v~VvG~G~sa~~~a~~l~~-~~~~V~~  311 (312)
                      ++||.+... ++..++.      .....+++|+|||+|++|+++|..+.. ++++|+|
T Consensus       295 ~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtl  352 (652)
T PRK12814        295 GIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTI  352 (652)
T ss_pred             CCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            888875432 2222221      123467899999999999998888554 5567876

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.06  E-value=3.9e-09  Score=92.96  Aligned_cols=141  Identities=17%  Similarity=0.122  Sum_probs=90.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|++.+.+|+++++...++. +    ..+.+.|+++ ||++++++.+++++.+. ....+.+.+...+   .
T Consensus       151 ~~~~e~a~~l~~~~~~V~~v~~~~~~~~-~----~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g---~  221 (300)
T TIGR01292       151 DSAIEEALYLTRIAKKVTLVHRRDKFRA-E----KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTG---E  221 (300)
T ss_pred             hHHHHHHHHHHhhcCEEEEEEeCcccCc-C----HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCC---c
Confidence            4799999999999999999999533332 2    3345667776 99999999999987532 2224444432111   1


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.+|++.|... ......+...+ ...+.+++.++++.|+||++||++...    ......+..++.....
T Consensus       222 ~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~  294 (300)
T TIGR01292       222 EEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG----YRQAVTAAGDGCIAAL  294 (300)
T ss_pred             eEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcc----hhhhhhhhhhHHHHHH
Confidence            14689999999999632 22222222222 234667888899999999999966421    1333445555554443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12831 putative oxidoreductase; Provisional

Probab=99.05  E-value=1.9e-09  Score=100.66  Aligned_cols=145  Identities=17%  Similarity=0.152  Sum_probs=91.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN------   90 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~------   90 (312)
                      ++|+|+|..|.++|.+|||++| + ..++....++     +.++++||++++++.+.++..+.++.+ .+.+..      
T Consensus       291 ~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  365 (464)
T PRK12831        291 NVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP  365 (464)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence            4799999999999999999998 4 3455544332     345678999999999999876444433 233320      


Q ss_pred             ccccc------cCCCccccccEEEEecCcchH-HHHHH--HHHCC-CcEEEEecc-CCCCCCcccccCCcccccccchhh
Q psy11185         91 VAEVR------QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHG-RKVIVLDYV-IPSPQGTTWGLGGTCVNVGCIPKK  159 (312)
Q Consensus        91 ~~~~~------~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~-~~~~~ve~~-~~~~~~~v~a~Gd~~~~~~~~~~~  159 (312)
                      ...++      .+....+++|.||++.|...- .+...  ..+.+ ...+.+|.. ++|+.|+||++||+....     .
T Consensus       366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-----~  440 (464)
T PRK12831        366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-----A  440 (464)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-----h
Confidence            00011      111135899999999996432 22111  01112 234667766 899999999999965432     2


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11185        160 LMHQAALLGEAIKDA  174 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~  174 (312)
                      ....+..+++....+
T Consensus       441 ~v~~Ai~~G~~AA~~  455 (464)
T PRK12831        441 TVILAMGAGKKAAKA  455 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345555555555443

>PRK13984 putative oxidoreductase; Provisional

Probab=99.05  E-value=1.2e-09  Score=105.59  Aligned_cols=145  Identities=21%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+|++|+.+|..+.+.|.+++++|....        .|+...                         ++  ++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~--------~gG~~~-------------------------~~--i~  327 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK--------PGGVMR-------------------------YG--IP  327 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCceEe-------------------------ec--CC
Confidence            45799999999999999999999999999986542        111100                         00  00


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                      .   .......+.            .....++..|+++..++....+     +...+   ....||+||+|||+. |+.+
T Consensus       328 ~---~~~~~~~~~------------~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l  384 (604)
T PRK13984        328 S---YRLPDEALD------------KDIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRST  384 (604)
T ss_pred             c---ccCCHHHHH------------HHHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccC
Confidence            0   000100000            0113455678887655432111     11111   235699999999976 6788


Q ss_pred             CCCCCCcc-eeccccccC-----------CCCCCCeEEEEcCchhhHHHHHHhhcC
Q psy11185        262 DIPGAKEH-CISSDDIFS-----------LEKPPGKTLVVGAGYIGKLETWDSNSG  305 (312)
Q Consensus       262 ~~~g~~~~-~~~~~~~~~-----------~~~~~~~v~VvG~G~sa~~~a~~l~~~  305 (312)
                      +++|.+.. .++..++..           ....+++|+|||||.+|+|.|..+...
T Consensus       385 ~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~  440 (604)
T PRK13984        385 RIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARL  440 (604)
T ss_pred             CCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhc
Confidence            89997542 222211111           112468999999999999999887654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.04  E-value=2.7e-09  Score=101.24  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      ++|+|+|..|+.++.+|||+++...++. +    +.+.+.+.+ .||++++++.+.+++.+++....+.+.+...+..  
T Consensus       361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-~----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~--  433 (517)
T PRK15317        361 NSGVEAAIDLAGIVKHVTVLEFAPELKA-D----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE--  433 (517)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEECccccc-c----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE--
Confidence            4899999999999999999999533332 2    344556665 6999999999999986432222456654322211  


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                       .++++|.++++.|... ..........+. ..+.+|+.++|+.|+|||+||++..
T Consensus       434 -~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~  488 (517)
T PRK15317        434 -HHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTV  488 (517)
T ss_pred             -EEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCC
Confidence             4689999999999633 222222222222 3477788889999999999997554

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.04  E-value=8.3e-10  Score=103.84  Aligned_cols=100  Identities=22%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             HHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc----eeccccccCC---CCC
Q psy11185        211 VMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH----CISSDDIFSL---EKP  282 (312)
Q Consensus       211 ~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~----~~~~~~~~~~---~~~  282 (312)
                      .+..+++|+++.+. +..++...-.+.+++|  .++.||+||+||||+|.+|++||.+.+    ..+.++...+   ...
T Consensus        67 dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~  144 (793)
T COG1251          67 DWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARN  144 (793)
T ss_pred             hhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhc
Confidence            34578899998776 7788888888999999  899999999999999999999999765    2344444333   233


Q ss_pred             CCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185        283 PGKTLVVGAGYIGKLETWDSNSGCGNVTIH  312 (312)
Q Consensus       283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~  312 (312)
                      .++.+|||||..|.|+|..|...+-+++|+
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vv  174 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVV  174 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEE
Confidence            446899999999999999999998888764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.02  E-value=1.9e-09  Score=99.12  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccch-HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE--EEEeeccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFD-QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK--VQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~-~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~--v~~~~~~~~~   95 (312)
                      .+|+|+|..|++.|++||++|+ +++++.+. +++.+.+.+.|++.||++++++.+.+++...+....  +...++    
T Consensus       146 ~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~----  221 (415)
T COG0446         146 PIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG----  221 (415)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC----
Confidence            5899999999999999999999 68888887 999999999999999999999999999864332111  233333    


Q ss_pred             cCCCccccccEEEEecCcch-HHHHHHHH---HCCCcEEEEeccCCCC-CCcccccCCccccc
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG-LAAAKEAA---AHGRKVIVLDYVIPSP-QGTTWGLGGTCVNV  153 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g-l~~a~~~~---~~~~~~~~ve~~~~~~-~~~v~a~Gd~~~~~  153 (312)
                          ..+++|.++++.|..+ ..++....   ......+.++..++++ .+++|++||++...
T Consensus       222 ----~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~  280 (415)
T COG0446         222 ----EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP  280 (415)
T ss_pred             ----cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeee
Confidence                5688999999999644 44444332   2222347788888887 99999999965443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.4e-09  Score=92.97  Aligned_cols=125  Identities=18%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -+.++|.|.+|++.+.+|||++|+..++. .+.+    .+.+++. +|++++++.+.++..+.  .-.+++++.. +   
T Consensus       152 G~sAve~Al~L~~~a~~Vtlv~r~~~~ra-~~~~----~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~-~---  220 (305)
T COG0492         152 GDSAVEEALYLSKIAKKVTLVHRRDEFRA-EEIL----VERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVK-G---  220 (305)
T ss_pred             CHHHHHHHHHHHHhcCeEEEEecCcccCc-CHHH----HHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecC-C---
Confidence            35899999999999999999999766676 4343    4444444 89999999999997543  2367777642 1   


Q ss_pred             CCccccccEEEEecCcchH-HHHHHHHHC-CCcEEEEeccCCCCCCcccccCCcccccc
Q psy11185         98 NTHKYDYDLLVLGGGSGGL-AAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGTCVNVG  154 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~gl-~~a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~  154 (312)
                      ....+.+|-+++..|.... .+...+... ....++++..++|+.|+|||+||++....
T Consensus       221 ~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~  279 (305)
T COG0492         221 EEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG  279 (305)
T ss_pred             ceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence            1157789999999996332 322222222 23457788889999999999999776543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.01  E-value=8.2e-10  Score=91.46  Aligned_cols=53  Identities=30%  Similarity=0.617  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCeEEEccCCCCCCCCCCCCCc--c---eeccccccCCCCCCCeEEEEcC
Q psy11185        239 NGEKKTLTAENILIATGGRPNYPDIPGAKE--H---CISSDDIFSLEKPPGKTLVVGA  291 (312)
Q Consensus       239 ~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~--~---~~~~~~~~~~~~~~~~v~VvG~  291 (312)
                      .++..++.||+||+|||+.|+.|.+||.+.  +   ..++..+......+++|+|||.
T Consensus       103 ~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  160 (201)
T PF07992_consen  103 TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT  160 (201)
T ss_dssp             TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred             cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence            334589999999999999999999998731  1   3455666666566779999993

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK09897 hypothetical protein; Provisional

Probab=99.00  E-value=3.4e-08  Score=93.07  Aligned_cols=195  Identities=12%  Similarity=0.026  Sum_probs=100.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCccc--ccc----cchhhHHHHHHH-HHHHHHHHH
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCV--NVG----CIPKKLMHQAAL-LGEAIKDAV  175 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~--~~~----~~~~~~~~~a~~-~~~~~~~~~  175 (312)
                      +++|||+|++|+.++..|.+.+.  ++.++|+......+-.|...+...  ..+    ..|....+.... .........
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~~   82 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQ   82 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHHH
Confidence            68999999999999999987543  689999866555555566543211  111    011100000000 000000011


Q ss_pred             HcCCccCC-ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCC--ceEEec-eeEEe--eCCeEEEEecCCCeEEEEcCe
Q psy11185        176 AYGWEIPN-VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK--VDYLNA-LGKFI--DQHSVEATMKNGEKKTLTAEN  249 (312)
Q Consensus       176 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--V~~~~~-~~~~~--~~~~~~v~~~~G~~~~i~ad~  249 (312)
                      .++..... ....++....+..|+....+.+    ...+...|  +.+... .+..+  +...+.+++.++ ...+.+|.
T Consensus        83 ~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l----~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-g~~i~aD~  157 (534)
T PRK09897         83 RYGVKKETLHDRQFLPRILLGEYFRDQFLRL----VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-LPSETFDL  157 (534)
T ss_pred             hcCCcceeecCCccCCeecchHHHHHHHHHH----HHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-CeEEEcCE
Confidence            11211100 0012334444555554443332    23344454  555433 33333  345577776443 15789999


Q ss_pred             EEEccCCCCCCCCCCCCCcceeccccccCCCC-CCCeEEEEcCchhhHHHHHHhhcC
Q psy11185        250 ILIATGGRPNYPDIPGAKEHCISSDDIFSLEK-PPGKTLVVGAGYIGKLETWDSNSG  305 (312)
Q Consensus       250 vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~-~~~~v~VvG~G~sa~~~a~~l~~~  305 (312)
                      ||+|||..+..+ ..+...|............ .+.+|+|+|.|.|+++++..|...
T Consensus       158 VVLAtGh~~p~~-~~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        158 AVIATGHVWPDE-EEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             EEECCCCCCCCC-ChhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence            999999643211 1222333222222222212 246799999999999999887744

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.98  E-value=6.8e-09  Score=97.10  Aligned_cols=145  Identities=16%  Similarity=0.166  Sum_probs=91.5

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeec-----
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNV-----   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~-----   91 (312)
                      ++|+|+|..|.++|. +||++++ + ..++....+     .+.++++||++++++.+.++..+.++...+.+...     
T Consensus       283 ~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~-----~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~  357 (457)
T PRK11749        283 NTAMDAARTAKRLGAESVTIVYRRGREEMPASEEE-----VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEP  357 (457)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH-----HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCc
Confidence            579999999999998 8999998 4 356655433     45678899999999999998764332112333210     


Q ss_pred             -cccc-----cCCCccccccEEEEecCcchH-HHHHH--HHHCC-CcEEEEec-cCCCCCCcccccCCcccccccchhhH
Q psy11185         92 -AEVR-----QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHG-RKVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKKL  160 (312)
Q Consensus        92 -~~~~-----~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~-~~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~~  160 (312)
                       ..++     +....++++|.||++.|...- .+...  ....+ ...+.++. .++|+.|+||++||+...     ...
T Consensus       358 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-----~~~  432 (457)
T PRK11749        358 DASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-----AAT  432 (457)
T ss_pred             CCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-----chH
Confidence             0000     111246899999999996332 21111  01111 12356665 788999999999996532     134


Q ss_pred             HHHHHHHHHHHHHH
Q psy11185        161 MHQAALLGEAIKDA  174 (312)
Q Consensus       161 ~~~a~~~~~~~~~~  174 (312)
                      ...+..++.....+
T Consensus       433 ~~~A~~~G~~aA~~  446 (457)
T PRK11749        433 VVWAVGDGKDAAEA  446 (457)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44566666655544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.96  E-value=7.3e-09  Score=100.96  Aligned_cols=151  Identities=18%  Similarity=0.282  Sum_probs=89.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+.+|..|.+.|.+++++|+...        .|+...                         ++.  +
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~--------~GG~l~-------------------------~gi--p  371 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE--------IGGLLT-------------------------FGI--P  371 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCceee-------------------------ecC--C
Confidence            46899999999999999999999999999987432        232110                         110  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                         ....+.+.+.            .....+...|+++..++...   ..  +...+   ....||+||+|||+. ++.+
T Consensus       372 ---~~~l~~~~~~------------~~~~~~~~~Gv~~~~~~~v~---~~--i~~~~---~~~~~DavilAtGa~~~~~l  428 (654)
T PRK12769        372 ---AFKLDKSLLA------------RRREIFSAMGIEFELNCEVG---KD--ISLES---LLEDYDAVFVGVGTYRSMKA  428 (654)
T ss_pred             ---CccCCHHHHH------------HHHHHHHHCCeEEECCCEeC---Cc--CCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence               0111111110            01133456688886554221   01  11111   123599999999975 4456


Q ss_pred             CCCCCCccee-cc--------ccccC---------CCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        262 DIPGAKEHCI-SS--------DDIFS---------LEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~-~~--------~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      .++|.+.... +.        +....         ....+++|+|||||++|++++.. +..++++|++
T Consensus       429 ~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~  497 (654)
T PRK12769        429 GLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC  497 (654)
T ss_pred             CCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            7777654211 10        11111         11346789999999999988764 6677777876

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.92  E-value=1.6e-08  Score=94.74  Aligned_cols=151  Identities=19%  Similarity=0.303  Sum_probs=89.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+|++|+.+|..+.+.+.+++++|....        .|+...                         ++.  +
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~--------~gG~l~-------------------------~gi--p  185 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE--------IGGLLT-------------------------FGI--P  185 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--------CCceee-------------------------ecC--c
Confidence            46899999999999999999999999999886532        222110                         110  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC-CC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-YP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~-~p  261 (312)
                         ....+.+.+            ......+...|+++..++..  ..   .+...+   ....||+||+|||+.+. .+
T Consensus       186 ---~~~~~~~~~------------~~~~~~~~~~Gv~~~~~~~v--~~---~~~~~~---~~~~~D~vilAtGa~~~~~~  242 (467)
T TIGR01318       186 ---SFKLDKAVL------------SRRREIFTAMGIEFHLNCEV--GR---DISLDD---LLEDYDAVFLGVGTYRSMRG  242 (467)
T ss_pred             ---cccCCHHHH------------HHHHHHHHHCCCEEECCCEe--CC---ccCHHH---HHhcCCEEEEEeCCCCCCcC
Confidence               011111100            01113456678888655422  11   111111   12469999999998764 46


Q ss_pred             CCCCCCcce-ecc--------cccc------CC---CCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        262 DIPGAKEHC-ISS--------DDIF------SL---EKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~-~~~--------~~~~------~~---~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      +++|.+... ++.        ....      ..   ...+++++|||+|++|++++.. +..++++|||
T Consensus       243 ~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtv  311 (467)
T TIGR01318       243 GLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTC  311 (467)
T ss_pred             CCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            788875431 111        0010      11   1346789999999999988776 5555567886

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.89  E-value=5.6e-09  Score=102.73  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...++|||+||+|+.+|..|.+.|.+++++|...
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            5689999999999999999999999999999753

>KOG2495|consensus

Probab=98.89  E-value=5.8e-09  Score=92.44  Aligned_cols=157  Identities=21%  Similarity=0.270  Sum_probs=93.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      -.-.+||+|+|.++.++...+-....+++++.+..-      |      .                         |.+.+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny------F------l-------------------------FTPLL   96 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY------F------L-------------------------FTPLL   96 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccc------e------E-------------------------Eeecc
Confidence            356799999999999988887666678888874210      0      0                         11111


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEe--cCC--CeEEEEcCeEEEccC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATM--KNG--EKKTLTAENILIATG  255 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~--~~G--~~~~i~ad~vVlAtG  255 (312)
                      |......++...+.+-++..         ......++.++++.-..+++  ..+.++.  .++  ....+.||+||+|+|
T Consensus        97 pS~~vGTve~rSIvEPIr~i---------~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~G  167 (491)
T KOG2495|consen   97 PSTTVGTVELRSIVEPIRAI---------ARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVG  167 (491)
T ss_pred             CCccccceeehhhhhhHHHH---------hhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEecc
Confidence            11111223333333332222         11223367787776555554  4455443  222  236799999999999


Q ss_pred             CCCCCCCCCCCCcceec------cccc-------------cCCC-CCCC---eEEEEcCchhhHHHHHHhhc
Q psy11185        256 GRPNYPDIPGAKEHCIS------SDDI-------------FSLE-KPPG---KTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       256 ~~p~~p~~~g~~~~~~~------~~~~-------------~~~~-~~~~---~v~VvG~G~sa~~~a~~l~~  304 (312)
                      +.+..+.+||..++++-      ...+             ..+. ...+   +++|||||++|+|.|.+|..
T Consensus       168 A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~D  239 (491)
T KOG2495|consen  168 AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELAD  239 (491)
T ss_pred             CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHH
Confidence            99999999999775332      1111             1111 0122   58999999999999988764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.86  E-value=5e-08  Score=93.30  Aligned_cols=123  Identities=13%  Similarity=0.003  Sum_probs=78.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      ++|+|+|.+|+++|++||+++++ ++..  .+.+   ..+.+++.||++++++.++++..+ +....+.+.+...+..  
T Consensus       153 ~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~~~V~~i~~~-~~v~~v~~~~~~~G~~--  224 (555)
T TIGR03143       153 FAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFNTELKEATGD-DGLRYAKFVNNVTGEI--  224 (555)
T ss_pred             HHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeCCEEEEEEcC-CcEEEEEEEECCCCCE--
Confidence            47999999999999999999994 4322  2222   233345579999999999998742 2211233332111100  


Q ss_pred             Ccc--ccccE----EEEecCcc-hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCccc
Q psy11185         99 THK--YDYDL----LVLGGGSG-GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        99 ~~~--~~~d~----vivg~G~~-gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                       ..  +++|.    ||++.|.. ...+.....+.+. ..+.+|..++|+.|+|||+||++.
T Consensus       225 -~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~  284 (555)
T TIGR03143       225 -TEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRP  284 (555)
T ss_pred             -EEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccC
Confidence             12  23565    99999952 2223332233332 357788889999999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.86  E-value=1.5e-08  Score=91.63  Aligned_cols=128  Identities=18%  Similarity=0.122  Sum_probs=81.0

Q ss_pred             hhhhhhhHhhhccCCe-EEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc-----
Q psy11185         20 DSGLECAGFLNGLGFN-ATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE-----   93 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~-vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~-----   93 (312)
                      ++|+|+|..|.++|.+ |||++++.....   .......+.|+++||++++++.+.+++.. +....+.+.....     
T Consensus       182 ~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~  257 (352)
T PRK12770        182 LTAVDAALEAVLLGAEKVYLAYRRTINEA---PAGKYEIERLIARGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDE  257 (352)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeecchhhC---CCCHHHHHHHHHcCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCc
Confidence            4799999999999997 999998432211   11133456688899999999999998743 2212344322100     


Q ss_pred             -------cccCCCccccccEEEEecCcch-HHHHHH-H-HHCCC-cEEEEeccCCCCCCcccccCCccc
Q psy11185         94 -------VRQDNTHKYDYDLLVLGGGSGG-LAAAKE-A-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        94 -------~~~~~~~~~~~d~vivg~G~~g-l~~a~~-~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                             ........+++|.+|++.|... ..+... + ...+. ..+.++...+++.++||++||++.
T Consensus       258 ~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~  326 (352)
T PRK12770        258 SGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT  326 (352)
T ss_pred             ccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEccccc
Confidence                   0000124689999999999532 222211 0 11111 246778888899999999999654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.82  E-value=3.4e-08  Score=97.81  Aligned_cols=145  Identities=19%  Similarity=0.201  Sum_probs=92.1

Q ss_pred             hhhhhhhHhhhccCCe-EEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185         20 DSGLECAGFLNGLGFN-ATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V-   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~-vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~-   91 (312)
                      ++|+|+|..+.++|.+ ||++++ + ..++....++     +.++++||++++++.+.++..+.++.+ .+.+..   + 
T Consensus       580 ~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  654 (752)
T PRK12778        580 NTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGE  654 (752)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecC
Confidence            5899999999999997 999998 4 3466544332     456788999999999999876444433 233321   0 


Q ss_pred             --cccc------cCCCccccccEEEEecCcchH-HHHHHH--HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhh
Q psy11185         92 --AEVR------QDNTHKYDYDLLVLGGGSGGL-AAAKEA--AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK  159 (312)
Q Consensus        92 --~~~~------~~~~~~~~~d~vivg~G~~gl-~~a~~~--~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~  159 (312)
                        ..++      +....++++|.||++.|...- .+...+  ...+ ...+.+|..++|+.|+|||+||+....     .
T Consensus       655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~-----~  729 (752)
T PRK12778        655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG-----A  729 (752)
T ss_pred             cCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc-----H
Confidence              0010      011135899999999996322 111111  1112 234677777799999999999965432     2


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11185        160 LMHQAALLGEAIKDA  174 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~  174 (312)
                      ....|..+++....+
T Consensus       730 ~vv~Av~~G~~AA~~  744 (752)
T PRK12778        730 TVILAMGDGKRAAAA  744 (752)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345566666655544

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.82  E-value=4.5e-08  Score=95.12  Aligned_cols=151  Identities=20%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+|++|+.+|..|.+.|.+++++|....        .|+...                         ++.  +
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~--------~GG~l~-------------------------~gi--p  354 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE--------IGGMLT-------------------------FGI--P  354 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC--------CCCeee-------------------------ccC--C
Confidence            46899999999999999999999999999987542        233110                         111  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p  261 (312)
                         +++++...+.            .....+...|+++..++...   .  .+...+   ....+|+||+|||+. ++.+
T Consensus       355 ---~~~l~~~~~~------------~~~~~~~~~Gv~~~~~~~v~---~--~~~~~~---l~~~~DaV~latGa~~~~~~  411 (639)
T PRK12809        355 ---PFKLDKTVLS------------QRREIFTAMGIDFHLNCEIG---R--DITFSD---LTSEYDAVFIGVGTYGMMRA  411 (639)
T ss_pred             ---cccCCHHHHH------------HHHHHHHHCCeEEEcCCccC---C--cCCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence               1122211111            01133556788886654211   1  111111   124589999999976 4557


Q ss_pred             CCCCCCcce-ec--------cccccC---------CCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        262 DIPGAKEHC-IS--------SDDIFS---------LEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~-~~--------~~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      +++|.+... ++        ..+...         ....+++|+|||+|.+|++.+.. +..++++||+
T Consensus       412 ~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~  480 (639)
T PRK12809        412 DLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC  480 (639)
T ss_pred             CCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            788865421 11        011111         11246789999999999987765 6677778886

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.78  E-value=8.3e-09  Score=94.31  Aligned_cols=144  Identities=26%  Similarity=0.273  Sum_probs=68.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCccccc-CCcccccc--cch-----------hhHH--HHHHHH
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGL-GGTCVNVG--CIP-----------KKLM--HQAALL  167 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~-Gd~~~~~~--~~~-----------~~~~--~~a~~~  167 (312)
                      ||++|||+|++|+.+|..+.+.+.+++++|++.+.... +.+. ++.|+..+  ..+           ....  ......
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkK-il~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKK-ILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH-HHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccc-eeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence            69999999999999999999999999999987655322 2233 24454332  100           0000  111111


Q ss_pred             HHHHHHHHHcCCccC--CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCe-EEEEecCCC
Q psy11185        168 GEAIKDAVAYGWEIP--NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHS-VEATMKNGE  241 (312)
Q Consensus       168 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~-~~v~~~~G~  241 (312)
                      ...+......|....  .....++.-+        .+......+...+.+.+|++...+ +..+  +... +.++++++ 
T Consensus        80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~--------~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~-  150 (409)
T PF03486_consen   80 EDLIAFFEELGVPTKIEEDGRVFPKSD--------KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG-  150 (409)
T ss_dssp             HHHHHHHHHTT--EEE-STTEEEETT----------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT-
T ss_pred             HHHHHHHHhcCCeEEEcCCCEECCCCC--------cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc-
Confidence            112222233343221  1001111110        112233344566778899997665 4433  2333 77877555 


Q ss_pred             eEEEEcCeEEEccCCCC
Q psy11185        242 KKTLTAENILIATGGRP  258 (312)
Q Consensus       242 ~~~i~ad~vVlAtG~~p  258 (312)
                       ..+.+|.||+|||+.+
T Consensus       151 -~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  151 -GEYEADAVILATGGKS  166 (409)
T ss_dssp             -EEEEESEEEE----SS
T ss_pred             -ccccCCEEEEecCCCC
Confidence             7999999999999654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.77  E-value=3e-08  Score=92.05  Aligned_cols=96  Identities=17%  Similarity=0.318  Sum_probs=66.7

Q ss_pred             hcCCceEEe-ceeEEee--CCeEEEEecC-CCeEEEE--cCeEEEccCCCCCCCCCCCCC-cceeccccccC---C----
Q psy11185        214 RDKKVDYLN-ALGKFID--QHSVEATMKN-GEKKTLT--AENILIATGGRPNYPDIPGAK-EHCISSDDIFS---L----  279 (312)
Q Consensus       214 ~~~gV~~~~-~~~~~~~--~~~~~v~~~~-G~~~~i~--ad~vVlAtG~~p~~p~~~g~~-~~~~~~~~~~~---~----  279 (312)
                      ...++++.. ..+..++  .+.+.+...+ +  .++.  ||+||+|||+.|+.|+++|.+ ...++..+...   +    
T Consensus        55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~--~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l  132 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTN--ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI  132 (427)
T ss_pred             HhcCCeEEecCEEEEEECCCCEEEEEECCCC--CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH
Confidence            566888753 4455554  3445554432 3  3566  999999999999999999975 22333222211   1    


Q ss_pred             -CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 -EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 -~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       ...+++|+|||+|.+|+|.|..|...+.+|++
T Consensus       133 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  165 (427)
T TIGR03385       133 DKNKVENVVIIGGGYIGIEMAEALRERGKNVTL  165 (427)
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence             13568999999999999999999888878876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.77  E-value=8.8e-08  Score=89.72  Aligned_cols=145  Identities=18%  Similarity=0.244  Sum_probs=90.6

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V-   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~-   91 (312)
                      ++|+|+|..+.++|. +|||++| + ..++..+.++     +.++++||++++++.+.++..+.++.+ .+++..   + 
T Consensus       292 ~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  366 (467)
T TIGR01318       292 DTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE  366 (467)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence            578999999999995 7999998 4 3567666543     456778999999999999875444433 233321   0 


Q ss_pred             --cccc------cCCCccccccEEEEecCcchH--H-HHHHHHHCCC-cEEEEe----ccCCCCCCcccccCCccccccc
Q psy11185         92 --AEVR------QDNTHKYDYDLLVLGGGSGGL--A-AAKEAAAHGR-KVIVLD----YVIPSPQGTTWGLGGTCVNVGC  155 (312)
Q Consensus        92 --~~~~------~~~~~~~~~d~vivg~G~~gl--~-~a~~~~~~~~-~~~~ve----~~~~~~~~~v~a~Gd~~~~~~~  155 (312)
                        ..++      ++....+++|.||++.|...-  . +.....+.+. ..+.++    ..++|+.++||++||++...  
T Consensus       367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~--  444 (467)
T TIGR01318       367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA--  444 (467)
T ss_pred             cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc--
Confidence              0010      011246899999999995321  1 1111112222 236666    46789999999999965432  


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q psy11185        156 IPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~  174 (312)
                         .....+..+++....+
T Consensus       445 ---~~~~~Ai~~G~~aA~~  460 (467)
T TIGR01318       445 ---DLVVTAVAEGRQAAQG  460 (467)
T ss_pred             ---cHHHHHHHHHHHHHHH
Confidence               2334455555555443

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0404|consensus

Probab=98.76  E-value=2.2e-08  Score=81.46  Aligned_cols=127  Identities=13%  Similarity=0.075  Sum_probs=87.1

Q ss_pred             hhhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         18 KVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        18 ~~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      +-+.+||.|.+|.+.+.+|+|++|++.++. +..+++   +.++..+|++++|+.+.+...++...-.+.+++-+++.. 
T Consensus       165 GGDsA~EEA~fLtkyaskVyii~Rrd~fRA-s~~Mq~---ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~-  239 (322)
T KOG0404|consen  165 GGDSAMEEALFLTKYASKVYIIHRRDHFRA-SKIMQQ---RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEE-  239 (322)
T ss_pred             CcHHHHHHHHHHHhhccEEEEEEEhhhhhH-HHHHHH---HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcc-
Confidence            457899999999999999999999766665 334433   345567899999998887764422112567776655433 


Q ss_pred             CCccccccEEEEecCcchHH-HHHHHHHCCCc--EEEEeccCCCCCCcccccCCccc
Q psy11185         98 NTHKYDYDLLVLGGGSGGLA-AAKEAAAHGRK--VIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~gl~-~a~~~~~~~~~--~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                        ..++.+-++.|.|.+.-. +-..-.+.+.+  +++.+....|+.|++||+||.+-
T Consensus       240 --~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD  294 (322)
T KOG0404|consen  240 --TDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD  294 (322)
T ss_pred             --cccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccch
Confidence              678999999999964322 11112233333  34444566899999999999653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.75  E-value=7.7e-08  Score=93.63  Aligned_cols=144  Identities=15%  Similarity=0.235  Sum_probs=88.0

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eeecc-
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKNVA-   92 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~~~-   92 (312)
                      ++|+|+|..+.++|. +|||+++ + ..|+..+.++.+     ..++||+|++++.+.++...++. +.+.   +..+. 
T Consensus       333 ~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~-----a~~eGV~i~~~~~~~~i~~~~~~-~~v~~~~~~~~~~  406 (652)
T PRK12814        333 NTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEE-----ALAEGVSLRELAAPVSIERSEGG-LELTAIKMQQGEP  406 (652)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHH-----HHHcCCcEEeccCcEEEEecCCe-EEEEEEEEEeccc
Confidence            479999999999996 6999998 4 467777655432     23579999999999998754332 2222   22211 


Q ss_pred             --ccc------cCCCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEe-ccCCCCCCcccccCCcccccccchhhH
Q psy11185         93 --EVR------QDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKKL  160 (312)
Q Consensus        93 --~~~------~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~~~~~~~~~~~~  160 (312)
                        .++      +.....+++|.||++.|.. ...+.... ...+. ..+.+| ..++|+.++|||+||+....     ..
T Consensus       407 d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~-----~~  481 (652)
T PRK12814        407 DESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA-----DI  481 (652)
T ss_pred             CCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc-----hH
Confidence              000      0111358999999999963 22211111 11121 235555 46889999999999965432     23


Q ss_pred             HHHHHHHHHHHHHH
Q psy11185        161 MHQAALLGEAIKDA  174 (312)
Q Consensus       161 ~~~a~~~~~~~~~~  174 (312)
                      ...+..+++....+
T Consensus       482 v~~Ai~~G~~AA~~  495 (652)
T PRK12814        482 AINAVEQGKRAAHA  495 (652)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455555554443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.70  E-value=1.4e-07  Score=91.97  Aligned_cols=145  Identities=15%  Similarity=0.220  Sum_probs=90.7

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-cC-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-SV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V-   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~-   91 (312)
                      ++|+|+|..+.++|. +||++++ ++ .++..+.+     .+.++++||++++++.+.++..+.++.+ .|.+..   + 
T Consensus       478 ~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  552 (654)
T PRK12769        478 DTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGE  552 (654)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecC
Confidence            589999999999996 7999998 43 46665544     3557889999999999999875444433 333321   0 


Q ss_pred             --cccc------cCCCccccccEEEEecCcchH--HHHHH-HHHCCC-cEEEEec----cCCCCCCcccccCCccccccc
Q psy11185         92 --AEVR------QDNTHKYDYDLLVLGGGSGGL--AAAKE-AAAHGR-KVIVLDY----VIPSPQGTTWGLGGTCVNVGC  155 (312)
Q Consensus        92 --~~~~------~~~~~~~~~d~vivg~G~~gl--~~a~~-~~~~~~-~~~~ve~----~~~~~~~~v~a~Gd~~~~~~~  155 (312)
                        ..++      ++...++++|.||++.|...-  ..... ..+.+. ..++++.    .++|+.++|||+||+....  
T Consensus       553 ~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~--  630 (654)
T PRK12769        553 PDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA--  630 (654)
T ss_pred             cCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC--
Confidence              0111      111136899999999996432  11111 122222 2355553    3689999999999965432  


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q psy11185        156 IPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~  174 (312)
                         .....|..+++....+
T Consensus       631 ---~~vv~Ai~~Gr~AA~~  646 (654)
T PRK12769        631 ---DLVVTAMAEGRHAAQG  646 (654)
T ss_pred             ---cHHHHHHHHHHHHHHH
Confidence               2334555555555443

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.68  E-value=9.1e-07  Score=80.39  Aligned_cols=198  Identities=14%  Similarity=0.126  Sum_probs=105.0

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC---cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHH-HHHHHHHHHHc--
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR---KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL-LGEAIKDAVAY--  177 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~---~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~--  177 (312)
                      .+++|||+|++|+..|..|.+...   .+.++|+...-..+-.|.....+...+.....+...... ...++......  
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            479999999999999999875432   377888766555444455444333222111111111011 11111111111  


Q ss_pred             CCc----cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe----eCCeEEEEecCCCeEEEEcCe
Q psy11185        178 GWE----IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI----DQHSVEATMKNGEKKTLTAEN  249 (312)
Q Consensus       178 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~----~~~~~~v~~~~G~~~~i~ad~  249 (312)
                      ...    .....+.++....|..|+..+.+.+.    .......+..++......    +.....+...+|  ....||-
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~----~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--~~~~ad~  155 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALL----ARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--PSEIADI  155 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHH----HhcCccceeEEeeeeecceeccCCceEEEecCCC--CeeeeeE
Confidence            000    11112344555666666655544332    111111355554443222    234566777888  7889999


Q ss_pred             EEEccCCCCCCCCC-----CCCCcceeccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCce
Q psy11185        250 ILIATGGRPNYPDI-----PGAKEHCISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCG  307 (312)
Q Consensus       250 vVlAtG~~p~~p~~-----~g~~~~~~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~  307 (312)
                      +|+|||+.+..++.     ++...++.+......+  -....+|+|+|+|.+-.+....+...+.
T Consensus       156 ~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh  220 (474)
T COG4529         156 IVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGH  220 (474)
T ss_pred             EEEeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCC
Confidence            99999965444332     3332232222222222  2334469999999999999998887553

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.66  E-value=1.9e-07  Score=86.27  Aligned_cols=150  Identities=25%  Similarity=0.323  Sum_probs=90.9

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      -.+.|||+||+|+.+|..|...+..+++++....        .|+...                         ++  ++ 
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~--------~GGll~-------------------------yG--IP-  167 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL--------DGGLLL-------------------------YG--IP-  167 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC--------CceeEE-------------------------ec--Cc-
Confidence            5799999999999999999999999999886442        222111                         11  00 


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccC-CCCCCCC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG-GRPNYPD  262 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG-~~p~~p~  262 (312)
                        ..+.+-+.+            ......+...|+++........     .++.+.   -.-.+|+|++||| ..|+..+
T Consensus       168 --~~kl~k~i~------------d~~i~~l~~~Gv~~~~~~~vG~-----~it~~~---L~~e~Dav~l~~G~~~~~~l~  225 (457)
T COG0493         168 --DFKLPKDIL------------DRRLELLERSGVEFKLNVRVGR-----DITLEE---LLKEYDAVFLATGAGKPRPLD  225 (457)
T ss_pred             --hhhccchHH------------HHHHHHHHHcCeEEEEcceECC-----cCCHHH---HHHhhCEEEEeccccCCCCCC
Confidence              011111111            1112345677888876553211     122211   1223599999999 5788888


Q ss_pred             CCCCCcc-eeccccc---------c------CCCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        263 IPGAKEH-CISSDDI---------F------SLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~-~~~~~~~---------~------~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      ++|.+.. .+...++         .      .....+++|+|||+|.+|++++.. +..++++|+.
T Consensus       226 i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~  291 (457)
T COG0493         226 IPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTC  291 (457)
T ss_pred             CCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEE
Confidence            9988642 1111111         1      111223789999999999977755 7777777763

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.66  E-value=3.2e-07  Score=92.29  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc--CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-ee-EEEEe-----e
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KL-KVQYK-----N   90 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~--~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~-~v~~~-----~   90 (312)
                      ++|+|+|..+.++|++||+++|+  ..++....++    .+ ..++||++++++.++++..++++ .+ .+.+.     .
T Consensus       457 ~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~  531 (944)
T PRK12779        457 NTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL----HH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE  531 (944)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEecCcccccccHHHH----HH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence            57999999999999999999983  3556544443    22 34679999999999998754322 22 22221     0


Q ss_pred             -ccccc-----cCCCccccccEEEEecCcchHHHHHHH---HHCCC-cEEEEec-cCCCCCCcccccCCcccccccchhh
Q psy11185         91 -VAEVR-----QDNTHKYDYDLLVLGGGSGGLAAAKEA---AAHGR-KVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKK  159 (312)
Q Consensus        91 -~~~~~-----~~~~~~~~~d~vivg~G~~gl~~a~~~---~~~~~-~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~  159 (312)
                       ...++     .+....+++|.||++.|..+-......   .+.+. ..+.++. .++|+.|+|||+||+....     .
T Consensus       532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~-----~  606 (944)
T PRK12779        532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG-----S  606 (944)
T ss_pred             ccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh-----H
Confidence             00010     111246899999999996443221111   11122 2355554 5789999999999965432     3


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11185        160 LMHQAALLGEAIKDAV  175 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~~  175 (312)
                      ....|..+++..+.+.
T Consensus       607 ~vv~Ai~eGr~AA~~I  622 (944)
T PRK12779        607 TAIRAAGDGQAAAKEI  622 (944)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555666666655544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.65  E-value=2.8e-07  Score=91.91  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             hhhhhhhHhhhccC--CeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eee-c
Q psy11185         20 DSGLECAGFLNGLG--FNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKN-V   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g--~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~-~   91 (312)
                      ++|+|+|..+.+++  .+|||++| + +.++..++++.+.+     ++||++++++.+.++..  ++.+.+.   +.. .
T Consensus       678 nVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-----eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d  750 (1019)
T PRK09853        678 NTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-----EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPD  750 (1019)
T ss_pred             hHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH-----HcCCEEEeCCceEEEEc--CCcEEEEEEEeeccc
Confidence            47999999998884  48999998 4 67777766653332     46999999999998863  2322221   110 0


Q ss_pred             cccc-----cCCCccccccEEEEecCcc-hHHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHH
Q psy11185         92 AEVR-----QDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ  163 (312)
Q Consensus        92 ~~~~-----~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~  163 (312)
                      ..++     ......+++|.||++.|.. ........ ...+ ...+.++..++|+.|+||++||+....     .....
T Consensus       751 ~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp-----~tvv~  825 (1019)
T PRK09853        751 ESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP-----STIVA  825 (1019)
T ss_pred             CCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc-----hHHHH
Confidence            0000     0112568999999999963 22222111 1111 123556878899999999999965332     24456


Q ss_pred             HHHHHHHHHHHH
Q psy11185        164 AALLGEAIKDAV  175 (312)
Q Consensus       164 a~~~~~~~~~~~  175 (312)
                      +..+++.+..+.
T Consensus       826 Ai~qGr~AA~nI  837 (1019)
T PRK09853        826 AIADARRAADAI  837 (1019)
T ss_pred             HHHHHHHHHHHH
Confidence            666666666654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.59  E-value=6.3e-07  Score=90.94  Aligned_cols=145  Identities=14%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             hhhhhhhHhhhccCCe-EEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee-----
Q psy11185         20 DSGLECAGFLNGLGFN-ATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN-----   90 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~-vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~-----   90 (312)
                      ++|+|+|..+.++|.+ |++++| + ..++....+     .+.++++||++++++.+.++..+.++.+ .+.+..     
T Consensus       581 ~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~  655 (1006)
T PRK12775        581 NTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGE  655 (1006)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecc
Confidence            5799999999999985 888987 3 344544333     3456788999999999999875444533 333321     


Q ss_pred             -ccccc-----cCCCccccccEEEEecCcchHH-HHHHH--HHCCC-cEEEEec-----cCCCCCCcccccCCccccccc
Q psy11185         91 -VAEVR-----QDNTHKYDYDLLVLGGGSGGLA-AAKEA--AAHGR-KVIVLDY-----VIPSPQGTTWGLGGTCVNVGC  155 (312)
Q Consensus        91 -~~~~~-----~~~~~~~~~d~vivg~G~~gl~-~a~~~--~~~~~-~~~~ve~-----~~~~~~~~v~a~Gd~~~~~~~  155 (312)
                       ...++     .+...++++|.||++.|...-. +....  ...+. ..+.++.     .++|+.|+|||+||++...  
T Consensus       656 ~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~--  733 (1006)
T PRK12775        656 PDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG--  733 (1006)
T ss_pred             cCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc--
Confidence             00010     1111358999999999964322 11110  11222 2355664     6789999999999966432  


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q psy11185        156 IPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~  174 (312)
                         .....+..+++....+
T Consensus       734 ---~~vv~Ai~~Gr~AA~~  749 (1006)
T PRK12775        734 ---ATVILAMGAGRRAARS  749 (1006)
T ss_pred             ---cHHHHHHHHHHHHHHH
Confidence               2334455555544443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.59  E-value=2.7e-07  Score=86.62  Aligned_cols=147  Identities=16%  Similarity=0.128  Sum_probs=85.8

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEccCCCccchH-------HHH-HHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEe
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIRSVPLRGFDQ-------QMA-KLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYK   89 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~~~~l~~~~~-------~~~-~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~   89 (312)
                      ++|+|+|..+.++|. +||++++.. ++..+.       .+. ....+.+++.||++++++.++++... ++.+ .|.+.
T Consensus       291 ~~g~e~A~~~~~~ga~~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~  368 (471)
T PRK12810        291 DTGMDCVGTAIRQGAKSVTQRDIMP-MPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVV  368 (471)
T ss_pred             HHHHHHHHHHHHcCCCeEEEccccC-CCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEE
Confidence            479999998888886 799776532 222221       000 11345677889999999999999742 3433 33332


Q ss_pred             -----ecc-ccccCCCccccccEEEEecCcch--HHHHHHH-HHCCC-cEEEEe-ccCCCCCCcccccCCcccccccchh
Q psy11185         90 -----NVA-EVRQDNTHKYDYDLLVLGGGSGG--LAAAKEA-AAHGR-KVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPK  158 (312)
Q Consensus        90 -----~~~-~~~~~~~~~~~~d~vivg~G~~g--l~~a~~~-~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~~~~~~~~~~  158 (312)
                           +++ ....+...++++|.||++.|...  ..+...+ ...+. ..++++ ..++|+.|+||++||+....     
T Consensus       369 ~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~-----  443 (471)
T PRK12810        369 RTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ-----  443 (471)
T ss_pred             EEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc-----
Confidence                 110 00011124689999999999432  1122111 22222 345666 67889999999999965422     


Q ss_pred             hHHHHHHHHHHHHHH
Q psy11185        159 KLMHQAALLGEAIKD  173 (312)
Q Consensus       159 ~~~~~a~~~~~~~~~  173 (312)
                      .....+..+++....
T Consensus       444 ~~~~~Av~~G~~AA~  458 (471)
T PRK12810        444 SLVVWAIAEGRQAAR  458 (471)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            233445555555444

>PRK13984 putative oxidoreductase; Provisional

Probab=98.57  E-value=8.3e-07  Score=86.00  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=78.2

Q ss_pred             hhhhhhhHhhhccCC------eEEEEEc--c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEe
Q psy11185         20 DSGLECAGFLNGLGF------NATVMIR--S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYK   89 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~------~vtl~~~--~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~   89 (312)
                      ++|+|+|..|+++|.      +|+++..  . ..++....++    .+ +.++||++++++.+.++... ++.+ .+.+.
T Consensus       428 ~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~  501 (604)
T PRK13984        428 NVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEI----EE-GLEEGVVIYPGWGPMEVVIE-NDKVKGVKFK  501 (604)
T ss_pred             hHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHH----HH-HHHcCCEEEeCCCCEEEEcc-CCEEEEEEEE
Confidence            589999999999864      7888753  2 3445444432    22 34679999999999888643 3322 33332


Q ss_pred             ec-----cccc------cCCCccccccEEEEecCcch-HHHHH-HH---HHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185         90 NV-----AEVR------QDNTHKYDYDLLVLGGGSGG-LAAAK-EA---AAHGRKVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        90 ~~-----~~~~------~~~~~~~~~d~vivg~G~~g-l~~a~-~~---~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      ..     ..++      +.....+++|.||++.|... ..... .+   .......+++|..++|+.++|||+||++.
T Consensus       502 ~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~  579 (604)
T PRK13984        502 KCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVH  579 (604)
T ss_pred             EEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCC
Confidence            10     0010      11124689999999999643 22111 11   11122347788889999999999999654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.57  E-value=6.3e-07  Score=87.19  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-cC-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEE---eecc
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-SV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQY---KNVA   92 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~---~~~~   92 (312)
                      ++|+|+|..+.++|. +||+++| ++ .++..+.++.     .++++||++++++.++++..++++.+ .+.+   ..++
T Consensus       461 ~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  535 (639)
T PRK12809        461 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGE  535 (639)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecC
Confidence            578999999889995 8999998 43 3666655532     35678999999999999975544533 2322   1110


Q ss_pred             ---ccc------cCCCccccccEEEEecCcchH--HHHH-HHHHCCC-cEEEEec----cCCCCCCcccccCCccccccc
Q psy11185         93 ---EVR------QDNTHKYDYDLLVLGGGSGGL--AAAK-EAAAHGR-KVIVLDY----VIPSPQGTTWGLGGTCVNVGC  155 (312)
Q Consensus        93 ---~~~------~~~~~~~~~d~vivg~G~~gl--~~a~-~~~~~~~-~~~~ve~----~~~~~~~~v~a~Gd~~~~~~~  155 (312)
                         .++      ++....+++|.||++.|...-  .... ...+.+. ..+.++.    .++|+.++||++||+....  
T Consensus       536 ~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~--  613 (639)
T PRK12809        536 PGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA--  613 (639)
T ss_pred             cCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc--
Confidence               111      112246899999999995331  1111 1112222 2344543    3689999999999965432  


Q ss_pred             chhhHHHHHHHHHHHHHH
Q psy11185        156 IPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~  173 (312)
                         .....+..+++....
T Consensus       614 ---~~vv~Ai~~Gr~AA~  628 (639)
T PRK12809        614 ---DLVVTAMAAGRQAAR  628 (639)
T ss_pred             ---hHHHHHHHHHHHHHH
Confidence               233455555555444

>PLN02463 lycopene beta cyclase

Probab=98.56  E-value=5e-07  Score=83.81  Aligned_cols=140  Identities=20%  Similarity=0.155  Sum_probs=76.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcC-Cc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYG-WE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~  180 (312)
                      ..+|++|||+|++|+++|..+.+.|.++.++|+......|+.|....         ...... .. ...+.. . +. ..
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~---------~~l~~l-gl-~~~l~~-~-w~~~~   93 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWV---------DEFEAL-GL-LDCLDT-T-WPGAV   93 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHH---------HHHHHC-Cc-HHHHHh-h-CCCcE
Confidence            45899999999999999999999999999999865433343332110         000000 00 000000 0 00 00


Q ss_pred             --cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185        181 --IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                        +........+.    .+.......+...+...+...++++....+..++  ...+.+++.+|  .++.||.||+|+|.
T Consensus        94 v~~~~~~~~~~~~----~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~  167 (447)
T PLN02463         94 VYIDDGKKKDLDR----PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGF  167 (447)
T ss_pred             EEEeCCCCccccC----cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCC
Confidence              00000000000    0111122334444445566678888765544333  34567788888  68999999999997


Q ss_pred             CCCC
Q psy11185        257 RPNY  260 (312)
Q Consensus       257 ~p~~  260 (312)
                      .+..
T Consensus       168 ~s~l  171 (447)
T PLN02463        168 SRCL  171 (447)
T ss_pred             CcCc
Confidence            6653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.55  E-value=1.8e-07  Score=85.92  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             hhhhhhh-Hhhh----ccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-ecc
Q psy11185         20 DSGLECA-GFLN----GLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVA   92 (312)
Q Consensus        20 ~ig~E~A-~~l~----~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~   92 (312)
                      .||+|++ .+++    ++|++|+++++ ++.++++  ++.+.+.+.|++.|+++++++++.+++..+ +.+..... ++.
T Consensus       225 vIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~  301 (422)
T PRK05329        225 VLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHG  301 (422)
T ss_pred             eecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCc
Confidence            4999999 8886    57999999998 6888875  688899999999999999999999988643 32333222 221


Q ss_pred             ccccCCCccccccEEEEecCc
Q psy11185         93 EVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        93 ~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .      ..+++|.+|+++|+
T Consensus       302 ~------~~i~AD~VVLAtGr  316 (422)
T PRK05329        302 D------IPLRARHFVLATGS  316 (422)
T ss_pred             e------EEEECCEEEEeCCC
Confidence            1      45789999999995

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.54  E-value=1.3e-06  Score=83.99  Aligned_cols=145  Identities=18%  Similarity=0.250  Sum_probs=89.2

Q ss_pred             hhhhhhhHhhhccC-CeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE---eec--
Q psy11185         20 DSGLECAGFLNGLG-FNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY---KNV--   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~g-~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~---~~~--   91 (312)
                      +.|+|+|..+.++| .+|+|++| + ..++..+.++     +...++||++++++.+.+++...++.+.+.+   ..+  
T Consensus       277 ~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~  351 (564)
T PRK12771        277 NTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMEL  351 (564)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEeccc
Confidence            57889999999998 78999998 4 3456555443     3345679999999999999764444332222   110  


Q ss_pred             -cccc----cCCCccccccEEEEecCcchH-HHHHH--HHHCCCcEEEEec-cCCCCCCcccccCCcccccccchhhHHH
Q psy11185         92 -AEVR----QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHGRKVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKKLMH  162 (312)
Q Consensus        92 -~~~~----~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~~~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~~~~  162 (312)
                       ..++    .....++++|.||++.|...- .....  ........+.+|. .++|+.++||++||+....     ....
T Consensus       352 ~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~-----~~v~  426 (564)
T PRK12771        352 DEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-----RTVT  426 (564)
T ss_pred             CCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc-----hHHH
Confidence             0011    112247899999999996432 11111  1111223456665 6789999999999965422     3444


Q ss_pred             HHHHHHHHHHHH
Q psy11185        163 QAALLGEAIKDA  174 (312)
Q Consensus       163 ~a~~~~~~~~~~  174 (312)
                      .+..+++....+
T Consensus       427 ~Av~~G~~aA~~  438 (564)
T PRK12771        427 TAIGHGKKAARN  438 (564)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.53  E-value=1e-06  Score=88.25  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             hhhhhhhHhhhcc-CC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eee-c
Q psy11185         20 DSGLECAGFLNGL-GF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKN-V   91 (312)
Q Consensus        20 ~ig~E~A~~l~~~-g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~-~   91 (312)
                      ++|||+|..+.++ |. +|||++| + +.++..+.++.+.     .++||++++++.+.+++   ++.+.+.   +.. +
T Consensus       676 nvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~a-----leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d  747 (1012)
T TIGR03315       676 NTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEA-----LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPD  747 (1012)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHH-----HHcCCEEEeCCceEEEE---CCeEEEEEEEeeccc
Confidence            5899999999887 75 8999998 4 5677766654332     24799999998888886   2223221   110 0


Q ss_pred             cccc-----cCCCccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEecc-CCCCCCcccccCCcccccccchhhHHH
Q psy11185         92 AEVR-----QDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYV-IPSPQGTTWGLGGTCVNVGCIPKKLMH  162 (312)
Q Consensus        92 ~~~~-----~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~-~~~~~~~v~a~Gd~~~~~~~~~~~~~~  162 (312)
                      ..++     .+....+++|.||++.|... ..+...+ ...+. ..+.+|.. .+|+.++||++||++...     ....
T Consensus       748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP-----~tVv  822 (1012)
T TIGR03315       748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP-----ATIV  822 (1012)
T ss_pred             CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc-----cHHH
Confidence            0000     01113689999999999632 2222211 11122 23556654 789999999999965432     2445


Q ss_pred             HHHHHHHHHHHHH
Q psy11185        163 QAALLGEAIKDAV  175 (312)
Q Consensus       163 ~a~~~~~~~~~~~  175 (312)
                      .+..+++....+.
T Consensus       823 ~AIaqGr~AA~nI  835 (1012)
T TIGR03315       823 EAIADGRKAANAI  835 (1012)
T ss_pred             HHHHHHHHHHHHH
Confidence            5666666666654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=1.7e-06  Score=83.33  Aligned_cols=51  Identities=31%  Similarity=0.455  Sum_probs=40.9

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCC---CcEEEEeccCCCCCCcccccCCcc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHG---RKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~---~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      +++++|+||||+|.+|+.+|..+.+.+   .+++++++.........++.|+.+
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~   55 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTA   55 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccc
Confidence            467899999999999999999998887   689999987655444556666544

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.51  E-value=2.2e-06  Score=82.52  Aligned_cols=159  Identities=17%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccc-------------------cchhh
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKK  159 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~  159 (312)
                      ++++|+||||+|.+|+.+|..+.+.+  .+|+++++.........++.|+.+...+                   +.+..
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~   81 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV   81 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence            56889999999999999999998764  5899999876555555556555432211                   11111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCccCCcccccc-----CHHHHHHHHHH---HHHHhhHHHHHHHhc-CCceEEece-eEE--
Q psy11185        160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQH-----NWANLREAVQN---HVKSVNWVTRVMLRD-KKVDYLNAL-GKF--  227 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~-~gV~~~~~~-~~~--  227 (312)
                      ...........+.+...+|..+.......+     ......+....   .-..+...+...+.. .+|+++..+ ...  
T Consensus        82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li  161 (582)
T PRK09231         82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL  161 (582)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence            222233334444445556766532111111     00000000000   001122222333333 478876554 222  


Q ss_pred             eeCCeEE----EEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        228 IDQHSVE----ATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       228 ~~~~~~~----v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      .+...+.    +...+|+...+.|+.||+|||+...
T Consensus       162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence            2233332    3345776678999999999996553

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=3.1e-06  Score=81.22  Aligned_cols=51  Identities=39%  Similarity=0.635  Sum_probs=40.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      ..+++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+
T Consensus         2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~   52 (566)
T PRK06452          2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIA   52 (566)
T ss_pred             CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchh
Confidence            346899999999999999999999989999999987654444455555443

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.47  E-value=4.8e-06  Score=80.72  Aligned_cols=158  Identities=18%  Similarity=0.238  Sum_probs=86.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhh
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKK  159 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~  159 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+...+                     +.+..
T Consensus        48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l  127 (635)
T PLN00128         48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA  127 (635)
T ss_pred             eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence            457899999999999999999999899999999876554444556555432211                     11111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCccCCccccccCHHHHH-------------HHHHH---HHHHhhHHHHHHHhcCCceEEec
Q psy11185        160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLR-------------EAVQN---HVKSVNWVTRVMLRDKKVDYLNA  223 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~gV~~~~~  223 (312)
                      ...........+.+...+|.+|.......+....+.             +....   .-..+...+...+.+.+|+++..
T Consensus       128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~  207 (635)
T PLN00128        128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE  207 (635)
T ss_pred             HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence            222233344444455556766542111101000000             00000   00112223444455678988765


Q ss_pred             e-eEE-e-e-CCeE---EE-EecCCCeEEEEcCeEEEccCCCC
Q psy11185        224 L-GKF-I-D-QHSV---EA-TMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       224 ~-~~~-~-~-~~~~---~v-~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      + ... + + ...+   .+ ...+|+...+.|+.||+|||+..
T Consensus       208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            4 222 2 2 2222   22 22467677899999999999654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.46  E-value=1.4e-06  Score=83.63  Aligned_cols=151  Identities=22%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..+++|||+||+|+.+|..+.+.|.+++++|+...        .|+...                         ++.  +
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi--p  181 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK--------LGGMMR-------------------------YGI--P  181 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCCeee-------------------------ecC--C
Confidence            45799999999999999999999999999987542        232110                         110  0


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-CCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-~~p  261 (312)
                         .++.+.+.....            ...+...|+++..+.....+   +..  ..   ....+|.||+|||+.+ ..+
T Consensus       182 ---~~~~~~~~~~~~------------l~~~~~~Gv~~~~~~~~~~~---~~~--~~---~~~~~D~Vi~AtG~~~~~~~  238 (564)
T PRK12771        182 ---AYRLPREVLDAE------------IQRILDLGVEVRLGVRVGED---ITL--EQ---LEGEFDAVFVAIGAQLGKRL  238 (564)
T ss_pred             ---CccCCHHHHHHH------------HHHHHHCCCEEEeCCEECCc---CCH--HH---HHhhCCEEEEeeCCCCCCcC
Confidence               011111111110            12344567776544321001   000  00   1124899999999764 445


Q ss_pred             CCCCCCcce-eccccc------cCCCCCCCeEEEEcCchhhHHHHHHhh-cCceeeee
Q psy11185        262 DIPGAKEHC-ISSDDI------FSLEKPPGKTLVVGAGYIGKLETWDSN-SGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~-~~~~~~------~~~~~~~~~v~VvG~G~sa~~~a~~l~-~~~~~V~~  311 (312)
                      .+++..... ...-++      ......+++|+|||+|.+|++.+..+. .+++.|++
T Consensus       239 ~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~i  296 (564)
T PRK12771        239 PIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTI  296 (564)
T ss_pred             CCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEE
Confidence            677754321 111111      112345778999999999998777544 44456654

>KOG0399|consensus

Probab=98.46  E-value=7.4e-07  Score=87.35  Aligned_cols=149  Identities=23%  Similarity=0.383  Sum_probs=92.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      -..+.|||.||+||++|.+|.+.|..+++.|...+        +|+..                         .+|.  |
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr--------~ggll-------------------------~ygi--p 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR--------VGGLL-------------------------MYGI--P 1829 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC--------cCcee-------------------------eecC--C
Confidence            46799999999999999999999999999887543        34311                         1221  1


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p  261 (312)
                      .   .+.|--.+.+.+            ..+...||+++..+...  +.   +.. |+  -.-..|+||+|+|+ .|+-+
T Consensus      1830 n---mkldk~vv~rrv------------~ll~~egi~f~tn~eig--k~---vs~-d~--l~~~~daiv~a~gst~prdl 1886 (2142)
T KOG0399|consen 1830 N---MKLDKFVVQRRV------------DLLEQEGIRFVTNTEIG--KH---VSL-DE--LKKENDAIVLATGSTTPRDL 1886 (2142)
T ss_pred             c---cchhHHHHHHHH------------HHHHhhCceEEeecccc--cc---ccH-HH--HhhccCeEEEEeCCCCCcCC
Confidence            1   122211111111            23456799998765321  11   211 22  23457999999996 58888


Q ss_pred             CCCCCCcceec-------c--c-------cccCCCCCCCeEEEEcCchhhHHHHHH-hhcCceee
Q psy11185        262 DIPGAKEHCIS-------S--D-------DIFSLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNV  309 (312)
Q Consensus       262 ~~~g~~~~~~~-------~--~-------~~~~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V  309 (312)
                      ++||-+....|       .  .       +.......+|+|+|||||.+|-++.-. .+.++++|
T Consensus      1887 pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv 1951 (2142)
T KOG0399|consen 1887 PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSV 1951 (2142)
T ss_pred             CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhcccee
Confidence            99988653211       1  1       111223467789999999999865544 66777665

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.44  E-value=3.1e-06  Score=67.26  Aligned_cols=142  Identities=15%  Similarity=0.122  Sum_probs=74.6

Q ss_pred             EEEecCcchHHHHHHHHHC-----CCcEEEEeccCCCCCCcccccC-CcccccccchhhHHHHHHHH-HHHHHHHHHcCC
Q psy11185        107 LVLGGGSGGLAAAKEAAAH-----GRKVIVLDYVIPSPQGTTWGLG-GTCVNVGCIPKKLMHQAALL-GEAIKDAVAYGW  179 (312)
Q Consensus       107 vivg~G~~gl~~a~~~~~~-----~~~~~~ve~~~~~~~~~v~a~G-d~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~  179 (312)
                      +|||+|++|+.++..|.+.     ..++.++|+.. .....+|..- +.+...+.....+....... ..........+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~   79 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA   79 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence            5999999999999999876     23689999843 3445566554 22211111111111111111 111111111110


Q ss_pred             --ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCce--EEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEc
Q psy11185        180 --EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD--YLNALGKFID--QHSVEATMKNGEKKTLTAENILIA  253 (312)
Q Consensus       180 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlA  253 (312)
                        ........++.+..+-.|+....+.+.    ..+ ..+++  .+...+..+.  ...+.+.+.+|  ..+.+|.||+|
T Consensus        80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~----~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa  152 (156)
T PF13454_consen   80 DEAEEIDPDDFPPRALFGEYLRDRFDRLL----ARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLA  152 (156)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHHH----Hhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEEC
Confidence              000111344555666666655544332    223 34544  4555544433  44577888888  78899999999


Q ss_pred             cCC
Q psy11185        254 TGG  256 (312)
Q Consensus       254 tG~  256 (312)
                      ||.
T Consensus       153 ~Gh  155 (156)
T PF13454_consen  153 TGH  155 (156)
T ss_pred             CCC
Confidence            996

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.43  E-value=6.1e-06  Score=79.90  Aligned_cols=158  Identities=18%  Similarity=0.234  Sum_probs=87.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc----c-----------------chhh
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG----C-----------------IPKK  159 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~----~-----------------~~~~  159 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.....+    .                 .+..
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l  106 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA  106 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence            457899999999999999999999899999999876555455566565432211    0                 1111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCccCCccccccC---HHHH----------HHHHH---HHHHHhhHHHHHHHhcCCceEEec
Q psy11185        160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHN---WANL----------REAVQ---NHVKSVNWVTRVMLRDKKVDYLNA  223 (312)
Q Consensus       160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~---~~~~~~~~~~~~~~~~~gV~~~~~  223 (312)
                      ...........+.+...+|..+.......+.   +...          .+...   ..-..+...+...+.+.+|+++..
T Consensus       107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~  186 (617)
T PTZ00139        107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE  186 (617)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence            1222333444444555566655321111000   0000          00000   001122333445566678998776


Q ss_pred             e-eEE-e--eCCeEE-E---EecCCCeEEEEcCeEEEccCCCC
Q psy11185        224 L-GKF-I--DQHSVE-A---TMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       224 ~-~~~-~--~~~~~~-v---~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      + ... +  +..++. +   ...+|+...+.|+.||+|||+..
T Consensus       187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            5 222 2  222222 2   33577677899999999999654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.43  E-value=3.6e-06  Score=81.97  Aligned_cols=49  Identities=35%  Similarity=0.416  Sum_probs=38.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .++++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GG   50 (657)
T PRK08626          2 KIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGG   50 (657)
T ss_pred             CceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhh
Confidence            4678999999999999999999999999999999865543333344333

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.40  E-value=7.2e-06  Score=78.80  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCccccccc-------------------chhhH
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGC-------------------IPKKL  160 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-------------------~~~~~  160 (312)
                      +++|+||||+|.+|+.+|..+.+.  +.+++++++.........++.|+.+...+.                   .+...
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv   81 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV   81 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence            578999999999999999998875  468999998766555555666665432211                   11111


Q ss_pred             HHHHHHHHHHHHHHHHcCCccCCcccccc-----CHHHHHHHHHH---HHHHhhHHHHHHHhc-CCceEEece-eEE--e
Q psy11185        161 MHQAALLGEAIKDAVAYGWEIPNVKSVQH-----NWANLREAVQN---HVKSVNWVTRVMLRD-KKVDYLNAL-GKF--I  228 (312)
Q Consensus       161 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~-~gV~~~~~~-~~~--~  228 (312)
                      ..........+.+...+|..+.......+     ......+....   .-..+...+...+.. .+|+++..+ ...  .
T Consensus        82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~  161 (580)
T TIGR01176        82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV  161 (580)
T ss_pred             HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence            22223333444444556655532111111     00000000000   001122223333333 478876554 221  2


Q ss_pred             eCCeEE----EEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        229 DQHSVE----ATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       229 ~~~~~~----v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      +...+.    +...+|+...+.|+.||+|||+...
T Consensus       162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       162 DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            233332    2345776678999999999996543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=6.2e-06  Score=79.47  Aligned_cols=49  Identities=33%  Similarity=0.606  Sum_probs=37.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      ..++|+||||+|.+|+.+|..+.+. .+|+++++.........++.|+.+
T Consensus         3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~   51 (583)
T PRK08205          3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMC   51 (583)
T ss_pred             ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchh
Confidence            3578999999999999999998875 789999987654444445555543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=8e-06  Score=78.89  Aligned_cols=50  Identities=32%  Similarity=0.486  Sum_probs=39.5

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ...++|+||||+|.+|+.+|..+.+.+.+++++++.........++.|+.
T Consensus         9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi   58 (598)
T PRK09078          9 IDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGI   58 (598)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCc
Confidence            34679999999999999999999998889999998754444445555553

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=6.6e-06  Score=79.81  Aligned_cols=50  Identities=34%  Similarity=0.499  Sum_probs=39.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      +++++|+||||+|.+|+.+|..+.+.|.+|+++++........+++.|+.
T Consensus         5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi   54 (626)
T PRK07803          5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGC   54 (626)
T ss_pred             cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccc
Confidence            45679999999999999999999999999999998754433345555543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.37  E-value=8.1e-06  Score=78.66  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=85.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhhH
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKKL  160 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~~  160 (312)
                      .++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+...+                     +.+...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            47899999999999999999999899999999876554444555554322211                     111112


Q ss_pred             HHHHHHHHHHHHHHHHcCCccCCccccccC---HHH---------HHHHHHH---HHHHhhHHHHHHHhcCCceEEece-
Q psy11185        161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHN---WAN---------LREAVQN---HVKSVNWVTRVMLRDKKVDYLNAL-  224 (312)
Q Consensus       161 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~---~~~~~~~~~~~~~~~~gV~~~~~~-  224 (312)
                      ..........+.+...+|.+|.......+.   +..         .++..+.   .-..+...+...+...+|+++..+ 
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~  165 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY  165 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence            222334444455555667666331110000   000         0000000   011222234444556788887665 


Q ss_pred             eEE-e-e-CCeE-EE---EecCCCeEEEEcCeEEEccCCCC
Q psy11185        225 GKF-I-D-QHSV-EA---TMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       225 ~~~-~-~-~~~~-~v---~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ... + + ..++ -+   ...+|+...+.|+.||+|||+..
T Consensus       166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            222 2 2 2222 22   23567667899999999999654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.37  E-value=1.6e-06  Score=79.45  Aligned_cols=32  Identities=41%  Similarity=0.706  Sum_probs=30.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +|++|||+||+|+.+|..+.+.|.+++++|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=1.2e-05  Score=77.58  Aligned_cols=51  Identities=29%  Similarity=0.512  Sum_probs=41.1

Q ss_pred             CccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185         99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ++++++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi   58 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGI   58 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCc
Confidence            356789999999999999999999998889999998765544555565553

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.34  E-value=1.8e-06  Score=79.32  Aligned_cols=92  Identities=24%  Similarity=0.333  Sum_probs=64.5

Q ss_pred             cCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eecc---ccccC---CCCCCCeE
Q psy11185        215 DKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CISS---DDIFS---LEKPPGKT  286 (312)
Q Consensus       215 ~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~~---~~~~~---~~~~~~~v  286 (312)
                      ..++++...+ +..++...-.+.+.+|   .+.+|++|+|||++|..++  +.... .++.   .+...   .....+++
T Consensus        65 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  139 (415)
T COG0446          65 ATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPP--ISDWEGVVTLRLREDAEALKGGAEPPKDV  139 (415)
T ss_pred             hhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCC--ccccCceEEECCHHHHHHHHHHHhccCeE
Confidence            4567775544 6666766667777777   8899999999999999876  22111 1111   11111   11225789


Q ss_pred             EEEcCchhhHHHHHHhhcCceeeee
Q psy11185        287 LVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       287 ~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|+|+|..|+++|..+...+.+|++
T Consensus       140 ~vvG~G~~gle~A~~~~~~G~~v~l  164 (415)
T COG0446         140 VVVGAGPIGLEAAEAAAKRGKKVTL  164 (415)
T ss_pred             EEECCcHHHHHHHHHHHHcCCeEEE
Confidence            9999999999999999999888876

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.34  E-value=5.1e-06  Score=78.27  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             hhhhhhhHhhhccC-CeEEEEEc-cCCCccch---------H--HHHHHHHHHHhccceEE-EeeceeeEEEEcCCCee-
Q psy11185         20 DSGLECAGFLNGLG-FNATVMIR-SVPLRGFD---------Q--QMAKLICEEMAEGGVHF-LHKCLPLSVTKLADGKL-   84 (312)
Q Consensus        20 ~ig~E~A~~l~~~g-~~vtl~~~-~~~l~~~~---------~--~~~~~~~~~l~~~gi~~-~~~~~v~~~~~~~~~~~-   84 (312)
                      ++|+|+|..+.++| .+||++++ ++.+....         .  ++.....+..+..||++ ++++.+.++..+.++.+ 
T Consensus       293 ~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~  372 (485)
T TIGR01317       293 DTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVT  372 (485)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEE
Confidence            57999987777766 58999997 44432211         0  11122233333456654 46788888865433333 


Q ss_pred             EEEE-----eeccccc------cCCCccccccEEEEecCcc--hHHHHHHH-HHCCC-c-EEEEeccCCCCCCcccccCC
Q psy11185         85 KVQY-----KNVAEVR------QDNTHKYDYDLLVLGGGSG--GLAAAKEA-AAHGR-K-VIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus        85 ~v~~-----~~~~~~~------~~~~~~~~~d~vivg~G~~--gl~~a~~~-~~~~~-~-~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .+.+     ..++.++      ++...++++|.||++.|..  ...+...+ .+.+. . +.+.+..++|+.++||++||
T Consensus       373 ~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD  452 (485)
T TIGR01317       373 ALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGD  452 (485)
T ss_pred             EEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeec
Confidence            3332     1111111      1112468999999999953  22222211 22122 2 33556778999999999999


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHH
Q psy11185        149 TCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       149 ~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ++...     .....+..+++....+
T Consensus       453 ~~~g~-----~~~~~Av~~G~~AA~~  473 (485)
T TIGR01317       453 CRRGQ-----SLIVWAINEGRKAAAA  473 (485)
T ss_pred             cCCCc-----HHHHHHHHHHHHHHHH
Confidence            65332     2334455555554443

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.34  E-value=1.5e-06  Score=79.12  Aligned_cols=146  Identities=19%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             cEEEEecCcchHHHHHHH--HHCCCcEEEEeccCCCCCC--cccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        105 DLLVLGGGSGGLAAAKEA--AAHGRKVIVLDYVIPSPQG--TTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~--~~~~~~~~~ve~~~~~~~~--~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      |+||||+|++|+.+|..+  ...+.+++++|+......+  ..|...+..         ...........+...   ...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~---------~~~~~~~v~~~w~~~---~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKD---------LGPLDSLVSHRWSGW---RVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccc---------ccchHHHHheecCce---EEE
Confidence            899999999999999999  6778889999986654222  233332210         000001111111100   000


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      .+.......+    ..|.......|...+...+...++.++...+..++.  ..+.+++.+|  .++.|+.||.|+|..+
T Consensus        69 ~~~~~~~~~~----~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   69 FPDGSRILID----YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS  142 (374)
T ss_pred             eCCCceEEcc----cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence            1110000011    111111123344444455555667777766555543  3456788888  6999999999999655


Q ss_pred             CCCCCCCCCc
Q psy11185        259 NYPDIPGAKE  268 (312)
Q Consensus       259 ~~p~~~g~~~  268 (312)
                      ....-.+.+.
T Consensus       143 ~~~~~~~~Q~  152 (374)
T PF05834_consen  143 PKARPLGLQH  152 (374)
T ss_pred             ccccccccce
Confidence            4333334443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.34  E-value=6e-06  Score=78.24  Aligned_cols=38  Identities=32%  Similarity=0.599  Sum_probs=34.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+++++|+....
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~   96 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA   96 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            45899999999999999999999999999999987653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.8e-06  Score=73.84  Aligned_cols=121  Identities=17%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -++|+|+|--|+.+-.+|||+|-...|+. |+-+    ++.|.. .+|++.+|..-+++..+++....+.+.+-.++.. 
T Consensus       363 GNSGvEAAIDLAGiv~hVtllEF~~eLkA-D~VL----q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~-  436 (520)
T COG3634         363 GNSGVEAAIDLAGIVEHVTLLEFAPELKA-DAVL----QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE-  436 (520)
T ss_pred             CcchHHHHHhHHhhhheeeeeecchhhhh-HHHH----HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce-
Confidence            46899999999999999999998555564 4444    334433 5899999999999886555433566665443322 


Q ss_pred             CCccccccEEEEecCc----chHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcc
Q psy11185         98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                        ..++-+-|+|-.|.    ..|.-+   .+...+ -|++|+...|+.|++||+|||.
T Consensus       437 --~~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~TsvpGvFAAGD~T  489 (520)
T COG3634         437 --HHLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGETNVPGVFAAGDCT  489 (520)
T ss_pred             --eEEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCcCCCceeecCccc
Confidence              34566778888884    233323   333333 3888999999999999999953

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.33  E-value=1.5e-06  Score=79.78  Aligned_cols=148  Identities=18%  Similarity=0.224  Sum_probs=76.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      .|++|||+||+|+.+|..+.+.|.+++++|+.....    ..+|+....      ........... +......+..+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~----~~cg~~i~~------~~l~~~g~~~~-~~~~~i~~~~~~~   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA----KPCGGAIPL------CMVDEFALPRD-IIDRRVTKMKMIS   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC----CCccccccH------hhHhhccCchh-HHHhhhceeEEec
Confidence            489999999999999999999999999999864321    224543211      11100000000 1111000100000


Q ss_pred             ccccccCHHH---HHHHH-HHHHHHhhHHHHHHHhcCCceEEeceeEEee-----CC--eEEEEecC-----CCeEEEEc
Q psy11185        184 VKSVQHNWAN---LREAV-QNHVKSVNWVTRVMLRDKKVDYLNALGKFID-----QH--SVEATMKN-----GEKKTLTA  247 (312)
Q Consensus       184 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-----~~--~~~v~~~~-----G~~~~i~a  247 (312)
                      +....+++..   ...++ ......|...+...+...|+++..++.....     ..  .+++...+     |+..++.|
T Consensus        70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a  149 (398)
T TIGR02028        70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV  149 (398)
T ss_pred             CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence            0001111110   00111 1123455555666777889999877644321     12  23333332     44468999


Q ss_pred             CeEEEccCCCCCCCC
Q psy11185        248 ENILIATGGRPNYPD  262 (312)
Q Consensus       248 d~vVlAtG~~p~~p~  262 (312)
                      +.||.|+|..+.+..
T Consensus       150 ~~VIgADG~~S~v~~  164 (398)
T TIGR02028       150 DAVIGADGANSRVAK  164 (398)
T ss_pred             CEEEECCCcchHHHH
Confidence            999999997666543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=8.3e-06  Score=78.49  Aligned_cols=48  Identities=27%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      +++|+||||+|.+|+.+|..+.+.+  .+|+++++.........++.|+.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi   51 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGI   51 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccch
Confidence            4689999999999999999998764  68999998765444455555553

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.32  E-value=4e-06  Score=78.09  Aligned_cols=37  Identities=24%  Similarity=0.441  Sum_probs=33.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ....+|++|||+||+|+.+|..+.+.|.+++++|+..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4457899999999999999999999999999999864

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.32  E-value=1.2e-05  Score=76.80  Aligned_cols=49  Identities=35%  Similarity=0.583  Sum_probs=38.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      ...++|+||||+|.+|+.+|..+.+.+.+++++++.........++.|+
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Gg   61 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGG   61 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccc
Confidence            3568999999999999999999999899999999876543334444443

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=1e-05  Score=77.45  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +++++|+||||+|.+|+.+|..+ +.+.+|+++|+...
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          4 EIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             ceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            46789999999999999999999 88889999998653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.31  E-value=1e-05  Score=69.63  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+||+|+.+|..+.+.+.+++++|+..
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            457899999999999999999999999999999765

>TIGR00551 nadB L-aspartate oxidase

Probab=98.31  E-value=1.3e-05  Score=75.70  Aligned_cols=156  Identities=19%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc-------------------cchhhHHHH
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKKLMHQ  163 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~~~~~  163 (312)
                      ++|+||||+|.+|+.+|..+.+.+. ++++++.........|+.|+.....+                   +.+......
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            5799999999999999999998886 99999875544444555554322111                   111111122


Q ss_pred             HHHHHHHHHHHHHcCCccCCccccccC-----HHHHHHHHH---HHHHHhhHHHHHHHhc-CCceEEece-eEEe--eCC
Q psy11185        164 AALLGEAIKDAVAYGWEIPNVKSVQHN-----WANLREAVQ---NHVKSVNWVTRVMLRD-KKVDYLNAL-GKFI--DQH  231 (312)
Q Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~-~gV~~~~~~-~~~~--~~~  231 (312)
                      .......+.....+|..+.......+.     ....++.+.   .....+...+...+.. .+|+++..+ ....  +..
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g  160 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG  160 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence            223333444444566554321110000     000000000   0011222334445555 689987665 3322  223


Q ss_pred             eEE-EEec-CCCeEEEEcCeEEEccCCCCC
Q psy11185        232 SVE-ATMK-NGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       232 ~~~-v~~~-~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      .+. +... .++...+.++.||+|||+...
T Consensus       161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       161 RVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            322 3222 243467899999999997654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>KOG1346|consensus

Probab=98.31  E-value=8.9e-07  Score=78.50  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=67.0

Q ss_pred             hcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc--------ceeccccccCCCC---
Q psy11185        214 RDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE--------HCISSDDIFSLEK---  281 (312)
Q Consensus       214 ~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~--------~~~~~~~~~~~~~---  281 (312)
                      .+-||-+.++. +..++...-.+.++||  .+|.||+++||||..|+..++.....        +.+...++..+..   
T Consensus       268 ~nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~a  345 (659)
T KOG1346|consen  268 VNGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLA  345 (659)
T ss_pred             ccCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhh
Confidence            45678888876 5556655666788999  89999999999999999866543321        2345566655532   


Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCc
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGC  306 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~  306 (312)
                      -.++|.|||+|+.|.|.++.|...+
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~  370 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKY  370 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhh
Confidence            3467999999999999888877653

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.30  E-value=1.4e-06  Score=80.00  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=35.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGT  142 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~  142 (312)
                      .++|++|||+||+|+.+|..+.+.|.+++++|+......+.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~   42 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP   42 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence            36899999999999999999999999999999977655544

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.30  E-value=4.5e-06  Score=76.42  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=72.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC----c
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW----E  180 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~  180 (312)
                      |++|||+|++|+.+|..+.+.+.+++++|+......+..|...+         ....... . .... ... +..    .
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~---------~~~~~~~-~-~~~~-~~~-~~~~~~~~   67 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWD---------DDLSDLG-L-ADCV-EHV-WPDVYEYR   67 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccH---------hhhhhhc-h-hhHH-hhc-CCCceEEe
Confidence            79999999999999999998899999999865432222221111         0000000 0 0000 000 100    0


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee---CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID---QHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      .+. .....++    .+.......+...+...+...++++..+.+....   ...+.+++.+|  .++.|+.||+|+|..
T Consensus        68 ~~~-~~~~~~~----~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~  140 (388)
T TIGR01790        68 FPK-QPRKLGT----AYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFG  140 (388)
T ss_pred             cCC-cchhcCC----ceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCc
Confidence            000 0000000    0000112334444445566668888766544433   34566777777  689999999999976


Q ss_pred             C
Q psy11185        258 P  258 (312)
Q Consensus       258 p  258 (312)
                      +
T Consensus       141 s  141 (388)
T TIGR01790       141 P  141 (388)
T ss_pred             h
Confidence            6

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.29  E-value=2.4e-05  Score=76.10  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++.++|+||||+|.+|+.+|..+.+.|.+|+++++..
T Consensus        32 ~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~   68 (640)
T PRK07573         32 NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD   68 (640)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence            4468999999999999999999999899999998744

>PLN02815 L-aspartate oxidase

Probab=98.28  E-value=1.3e-05  Score=77.11  Aligned_cols=48  Identities=33%  Similarity=0.525  Sum_probs=38.6

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .+.++|+||||+|.+|+.+|..+.+.+ +++++++.........|+.|+
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Gg   73 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGG   73 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcc
Confidence            567899999999999999999998888 899999876544444555554

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.26  E-value=1.5e-05  Score=74.83  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc-------------------cchhhHHHHH
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKKLMHQA  164 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~~~~~a  164 (312)
                      .|+||||+|.+|+.+|..+.+.+.+++++++... .....++.|+.+....                   +.+.......
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4899999999999999999999999999998642 2223344443221100                   0111111112


Q ss_pred             HHHHHHHHHHHHcCCccCCccccccCHHHHHHHH---HHHHHHhhHHHHHHHhcCCceEEeceeEEe--eCCeE-EEEec
Q psy11185        165 ALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAV---QNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQHSV-EATMK  238 (312)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~~~~-~v~~~  238 (312)
                      ......+.....+|..+....  ......+++..   ......+...+...+.+.+++++.......  +...+ .+.. 
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~--~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-  157 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNE--LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-  157 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCC--CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-
Confidence            222233333344555443210  00000011000   000112333344556677888876553332  22233 2333 


Q ss_pred             CCCeEEEEcCeEEEccCCCCCC
Q psy11185        239 NGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       239 ~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      +|  ..+.++.||+|||+++..
T Consensus       158 ~g--~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        158 DG--ELLKFDATVIATGGFSGL  177 (466)
T ss_pred             CC--EEEEeCeEEECCCcCcCC
Confidence            45  478999999999976544

>PRK08275 putative oxidoreductase; Provisional

Probab=98.26  E-value=1.6e-05  Score=76.17  Aligned_cols=38  Identities=32%  Similarity=0.534  Sum_probs=32.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~  137 (312)
                      ..+++|+||||+|.+|+.+|..+.+.  +.+++++|+...
T Consensus         6 ~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          6 QEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             eeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            34679999999999999999999876  568999998764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.22  E-value=2.5e-05  Score=75.18  Aligned_cols=44  Identities=39%  Similarity=0.571  Sum_probs=35.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      |+||||+|.+|+.+|..+.+.|.+|+++|+.........++.|+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg   44 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGG   44 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccC
Confidence            79999999999999999999999999999865433333444444

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.21  E-value=3.9e-06  Score=73.49  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=31.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +|++|||+|++|+.+|..+.+.+.+++++|+...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            5999999999999999999999999999998653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.20  E-value=1.6e-06  Score=80.41  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      .+|++|||+||+|+.+|..+.+.|.+++++|+....
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~   40 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA   40 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence            589999999999999999999999999999986543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.20  E-value=2.8e-05  Score=75.21  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~  137 (312)
                      .++++|+||||+|.+|+.+|..+.+.  |.+++++|+...
T Consensus         8 ~~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854          8 VEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             ceeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            34678999999999999999999887  889999998654

>PRK10015 oxidoreductase; Provisional

Probab=98.20  E-value=2.6e-06  Score=79.05  Aligned_cols=37  Identities=30%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      .++|+||||+||+|+++|..+.+.|.+++++|+....
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999986543

>PLN02697 lycopene epsilon cyclase

Probab=98.19  E-value=1.1e-05  Score=76.24  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+||+|+++|..+.+.|.+++++|+..+..  +-|.+....     +. .. .........+.....   .+
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~~-----l~-~l-gl~~~i~~~w~~~~v---~~  174 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-----FK-DL-GLEDCIEHVWRDTIV---YL  174 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--CccccchhH-----HH-hc-CcHHHHHhhcCCcEE---Ee
Confidence            45899999999999999999999999999998743221  112111100     00 00 000000001100000   00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEE-EEecCCCeEEEEcCeEEEccCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVE-ATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~-v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      +.......+    ..|.......+...+...+...|+++....+..+.  ...+. +.+.+|  .++.|+.||+|+|..+
T Consensus       175 ~~~~~~~~~----~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        175 DDDKPIMIG----RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS  248 (529)
T ss_pred             cCCceeecc----CcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence            100000000    00111122344444555566678888666554443  23333 345666  6899999999999765

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.19  E-value=1.1e-05  Score=74.69  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             cccEEEEecCcchHHHHHHHH-HCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAA-AHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~-~~~~~~~~ve~~~  136 (312)
                      ...++|||+||+|+.+|..+. ..+..+.++|+..
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            457999999999999998764 5678899999865

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.19  E-value=1.6e-05  Score=74.69  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=32.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|.+|+.+|..+.+.|.+++++|+..
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36899999999999999999999999999999865

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.19  E-value=2.3e-05  Score=67.27  Aligned_cols=37  Identities=35%  Similarity=0.530  Sum_probs=33.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|+...
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4578999999999999999999999999999998754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=4.8e-05  Score=73.38  Aligned_cols=47  Identities=30%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      .+|+||||+|.+|+.+|..+.+.|.+++++++.........++.|+.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi   49 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGI   49 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCe
Confidence            45999999999999999999999999999998765444445555543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.18  E-value=2.1e-05  Score=74.84  Aligned_cols=33  Identities=42%  Similarity=0.699  Sum_probs=30.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ++|+||||+|++|+.+|..+.+.|.++.+++..
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            689999999999999999999999999999875

>KOG2755|consensus

Probab=98.18  E-value=3.8e-05  Score=64.38  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             CeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCccee---ccccccCCC---CCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        231 HSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI---SSDDIFSLE---KPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       231 ~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~---~~~~~~~~~---~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      ..-.+++.+|  .++.|++|++|||++|.. ..+|....+.   +++....++   ...|.|+|+|.|-+|+|.++++..
T Consensus        79 ~ehci~t~~g--~~~ky~kKOG~tg~kPkl-q~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~  155 (334)
T KOG2755|consen   79 SEHCIHTQNG--EKLKYFKLCLCTGYKPKL-QVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI  155 (334)
T ss_pred             ccceEEecCC--ceeeEEEEEEecCCCcce-eecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc
Confidence            3456788899  789999999999999986 3454433332   333333222   356789999999999999988765


Q ss_pred             C
Q psy11185        305 G  305 (312)
Q Consensus       305 ~  305 (312)
                      .
T Consensus       156 ~  156 (334)
T KOG2755|consen  156 L  156 (334)
T ss_pred             c
Confidence            4

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.18  E-value=2.5e-05  Score=72.56  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      .++|+||||+|.+|+.+|..+. .+.+++++|+.........++.|+.+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~   50 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGIS   50 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhhe
Confidence            4689999999999999998874 68899999987654444455555443

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.17  E-value=4e-05  Score=72.68  Aligned_cols=46  Identities=24%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ++|+||||+|.+|+.+|..+.+ +.+|+++++.........|+.|..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi   48 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGI   48 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccc
Confidence            6899999999999999998865 789999998765444445566543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.16  E-value=1.7e-05  Score=73.87  Aligned_cols=34  Identities=35%  Similarity=0.543  Sum_probs=30.9

Q ss_pred             cEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPS  138 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~  138 (312)
                      |+||||+|.+|+.+|..+.+.| .+++++|+....
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            7999999999999999999999 899999986543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.16  E-value=1.7e-05  Score=73.41  Aligned_cols=33  Identities=48%  Similarity=0.695  Sum_probs=29.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |+||||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence            899999999999999999999999999998765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06834 hypothetical protein; Provisional

Probab=98.15  E-value=2.8e-05  Score=73.30  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=75.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCC--CcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ--GTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~--~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ++|++|||+||+|+.+|..|.+.|.+++++|+......  +...++.         +......  .....+......+..
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~---------~~s~~~L--~~lGl~~~l~~~~~~   71 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH---------ARTLEVL--DQRGIADRFLAQGQV   71 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC---------HHHHHHH--HHcCcHHHHHhcCCc
Confidence            47999999999999999999999999999997653211  1111110         0000000  000000000000000


Q ss_pred             cC--CccccccCHHHHHH---HHH-HHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEecCCCeEEEEcCeEE
Q psy11185        181 IP--NVKSVQHNWANLRE---AVQ-NHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKKTLTAENIL  251 (312)
Q Consensus       181 ~~--~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~~i~ad~vV  251 (312)
                      ..  ......+++..+..   +.. .....+...+...++..++++..++ ...+  +...+.++..+|  .++.+|+||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vV  149 (488)
T PRK06834         72 AQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLV  149 (488)
T ss_pred             cccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEE
Confidence            00  00000111111000   000 0012344445566667788887665 3222  345677777777  589999999


Q ss_pred             EccCCCCCCC
Q psy11185        252 IATGGRPNYP  261 (312)
Q Consensus       252 lAtG~~p~~p  261 (312)
                      .|+|..+.+.
T Consensus       150 gADG~~S~vR  159 (488)
T PRK06834        150 GCDGGRSLVR  159 (488)
T ss_pred             EecCCCCCcH
Confidence            9999877663

>PRK06847 hypothetical protein; Provisional

Probab=98.14  E-value=1.6e-05  Score=72.36  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..|++|||+|++|+.+|..|.+.|.+++++|...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3589999999999999999999999999999754

>KOG1800|consensus

Probab=98.13  E-value=2.1e-05  Score=69.32  Aligned_cols=143  Identities=18%  Similarity=0.294  Sum_probs=83.2

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+.|||+||+|+.+|..+++.  +..+.++|+....        ++                         ...||    
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP--------FG-------------------------LvRyG----   64 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP--------FG-------------------------LVRYG----   64 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc--------cc-------------------------eeeec----
Confidence            789999999999999998874  3467788874421        00                         00122    


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p  261 (312)
                          ..+|.+++...+.+....        +++....+.-.-..   ...+.+..     -+-.||+||||.|+ .++.+
T Consensus        65 ----VAPDHpEvKnvintFt~~--------aE~~rfsf~gNv~v---G~dvsl~e-----L~~~ydavvLaYGa~~dR~L  124 (468)
T KOG1800|consen   65 ----VAPDHPEVKNVINTFTKT--------AEHERFSFFGNVKV---GRDVSLKE-----LTDNYDAVVLAYGADGDRRL  124 (468)
T ss_pred             ----cCCCCcchhhHHHHHHHH--------hhccceEEEeccee---cccccHHH-----HhhcccEEEEEecCCCCccc
Confidence                334556666555444322        23333333322110   01122211     23359999999996 57789


Q ss_pred             CCCCCCcce-eccccc------------cCCCCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        262 DIPGAKEHC-ISSDDI------------FSLEKPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       262 ~~~g~~~~~-~~~~~~------------~~~~~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      ++||.+..+ +..+.+            ..+.....+|+|||.|+.|+++|.-|..
T Consensus       125 ~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  125 DIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             CCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence            999997431 111111            1223335679999999999987776543

>PRK11445 putative oxidoreductase; Provisional

Probab=98.12  E-value=3.5e-05  Score=69.62  Aligned_cols=33  Identities=36%  Similarity=0.499  Sum_probs=29.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +|++|||+||+|+.+|..+.+. .+++++|+...
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            6999999999999999999888 89999997653

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.11  E-value=7.3e-05  Score=71.42  Aligned_cols=48  Identities=35%  Similarity=0.515  Sum_probs=37.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      .+++|+||||+|.+|+.+|..+.+. .+|+++++.........|+.|..
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi   53 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGI   53 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCe
Confidence            5678999999999999999998875 78999998765444445565543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.09  E-value=5.3e-05  Score=78.52  Aligned_cols=38  Identities=37%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++.++|+||||+|.+|+.+|..+.+.|.+++++|+...
T Consensus       406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~  443 (1167)
T PTZ00306        406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK  443 (1167)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            57789999999999999999999999999999998654

>TIGR00275 flavoprotein, HI0933 family

Probab=98.09  E-value=6.6e-05  Score=69.05  Aligned_cols=32  Identities=38%  Similarity=0.600  Sum_probs=28.8

Q ss_pred             EEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       107 vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      +|||+|++|+.+|..+.+.+.+++++|+....
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence            68999999999999999999999999987653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.07  E-value=0.0004  Score=64.97  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhccceE--EEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVH--FLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++.+|+++..++.|++  ++++++|++++... +...|...++...    ..+..+|.||+++|.
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~----~~~~~~d~VIvAtG~  171 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGF----SKDEIFDAVVVCNGH  171 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCc----eEEEEcCEEEEeccC
Confidence            57888999988888888  88999999998643 3345555432110    023467888888883

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.07  E-value=5.9e-05  Score=71.62  Aligned_cols=49  Identities=31%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             CccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC-CCCCcccccCCc
Q psy11185         99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP-SPQGTTWGLGGT  149 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~-~~~~~v~a~Gd~  149 (312)
                      +.++++|+||||+|.+|+.+|..+.  +.+++++++... ......|+.|..
T Consensus         5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi   54 (513)
T PRK07512          5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGI   54 (513)
T ss_pred             ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhcc
Confidence            3578899999999999999998876  458999998764 232345555543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.07  E-value=0.00012  Score=74.21  Aligned_cols=38  Identities=42%  Similarity=0.676  Sum_probs=33.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..+++|+||||+|.+|+.+|..+.+.|.+++++++...
T Consensus        10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            45689999999999999999999988999999998654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.06  E-value=4.5e-05  Score=68.84  Aligned_cols=129  Identities=23%  Similarity=0.409  Sum_probs=67.6

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchh-------hHHHHHHHHHH-H--HHHH
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK-------KLMHQAALLGE-A--IKDA  174 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~-------~~~~~a~~~~~-~--~~~~  174 (312)
                      |++|||+|.+|+++|..+++.|.++.++.....           .+...+|.|.       .+.......+. .  +.+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d-----------~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~   69 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTD-----------TIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADE   69 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GG-----------GTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccc-----------ccccccchhhhccccccchhHHHhhhhhHHHHHHhH
Confidence            799999999999999999999999988732211           1111111111       11111111111 1  1111


Q ss_pred             HHcCCcc------CCccc--cccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe--eC-CeEEEEecCCCeE
Q psy11185        175 VAYGWEI------PNVKS--VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQ-HSVEATMKNGEKK  243 (312)
Q Consensus       175 ~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~-~~~~v~~~~G~~~  243 (312)
                      ....+..      +....  ...|...+..++....          ....+++++++.+..+  +. ....|.+.+|  .
T Consensus        70 ~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l----------~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~  137 (392)
T PF01134_consen   70 TGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKL----------ESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--E  137 (392)
T ss_dssp             HEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHH----------HTSTTEEEEES-EEEEEECTTEEEEEEETTS--E
T ss_pred             hhhhhhcccccCCCCccchHhhccHHHHHHHHHHHH----------hcCCCeEEEEcccceEEecCCeEEEEEeCCC--C
Confidence            1110010      00011  2456666666653332          2346899988776544  23 3455788888  7


Q ss_pred             EEEcCeEEEccCC
Q psy11185        244 TLTAENILIATGG  256 (312)
Q Consensus       244 ~i~ad~vVlAtG~  256 (312)
                      .+.+|.||+|||.
T Consensus       138 ~~~a~~vVlaTGt  150 (392)
T PF01134_consen  138 EIEADAVVLATGT  150 (392)
T ss_dssp             EEEECEEEE-TTT
T ss_pred             EEecCEEEEeccc
Confidence            9999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07190 hypothetical protein; Provisional

Probab=98.04  E-value=2.8e-05  Score=73.29  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..+|++|||+||+|+.+|..+.+.|.+++++|+...
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            457999999999999999999999999999998653

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.03  E-value=0.00023  Score=63.92  Aligned_cols=32  Identities=34%  Similarity=0.560  Sum_probs=30.3

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      |++|||+|..|+.+|..|.+.|.+|+++|+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence            79999999999999999999999999999873

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.03  E-value=2.5e-05  Score=71.46  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            57999999999999999999999999999998654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.02  E-value=5.2e-05  Score=69.26  Aligned_cols=150  Identities=21%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccc-------------------hhhHHHHHH
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-------------------PKKLMHQAA  165 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-------------------~~~~~~~a~  165 (312)
                      |++|||+|.+||.+|..+.+. .+++++.+.........||.|+..+..+..                   .........
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999888765 789999887766667789999876554322                   122222223


Q ss_pred             HHHHHHHHHHHcCCccCCcccc--ccCHHHHHHHH-------HHHHHHhhHHHHHHH-hcCCceEEece-eE--EeeCC-
Q psy11185        166 LLGEAIKDAVAYGWEIPNVKSV--QHNWANLREAV-------QNHVKSVNWVTRVML-RDKKVDYLNAL-GK--FIDQH-  231 (312)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~gV~~~~~~-~~--~~~~~-  231 (312)
                      .....+.+...+|..|......  ....+.-.+..       .+-...+. .+...+ +..+|+++++. ..  ..+.. 
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~-~L~~~v~~~p~I~v~e~~~a~~li~~~~~  166 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMT-ALLKKVRNRPNITVLEGAEALDLIIEDGI  166 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHH-HHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence            3444455556677666442221  11111100000       00001111 122333 34789998885 22  12222 


Q ss_pred             eE---EEEecCCCeEEEEcCeEEEccCC
Q psy11185        232 SV---EATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       232 ~~---~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                      .+   .+...+++...+.++.||+|||+
T Consensus       167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         167 GVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             eEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            22   22223234678999999999995

>PRK07121 hypothetical protein; Validated

Probab=98.02  E-value=9.7e-05  Score=69.91  Aligned_cols=37  Identities=41%  Similarity=0.548  Sum_probs=33.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~   54 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG   54 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3579999999999999999999999999999998654

>KOG0399|consensus

Probab=98.02  E-value=1.1e-05  Score=79.53  Aligned_cols=125  Identities=24%  Similarity=0.292  Sum_probs=78.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CC---C----cc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VP---L----RG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK   89 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~---l----~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~   89 (312)
                      ..|+.+|..|.+.|+.||++||+ ++   |    |.  .|+-+.++-...|.++||+|.+|+.+-+-..         + 
T Consensus      1795 paglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs---------~- 1864 (2142)
T KOG0399|consen 1795 PAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS---------L- 1864 (2142)
T ss_pred             chhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc---------H-
Confidence            46899999999999999999994 54   2    22  5888999999999999999999987654211         1 


Q ss_pred             eccccccCCCccccccEEEEecCc-------------chHHHHHHHHHCCCcEEEEec----cCCCCCCcccccCCcccc
Q psy11185         90 NVAEVRQDNTHKYDYDLLVLGGGS-------------GGLAAAKEAAAHGRKVIVLDY----VIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vivg~G~-------------~gl~~a~~~~~~~~~~~~ve~----~~~~~~~~v~a~Gd~~~~  152 (312)
                      ++        ...+.|.||++.|.             .|...|..+...+.+-+....    ........+..+|+--+.
T Consensus      1865 d~--------l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1865 DE--------LKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred             HH--------HhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcc
Confidence            00        12245666666662             577777766554332211111    112233455555554556


Q ss_pred             cccchhhHHH
Q psy11185        153 VGCIPKKLMH  162 (312)
Q Consensus       153 ~~~~~~~~~~  162 (312)
                      ..|+.+...|
T Consensus      1937 ~dcigtsvrh 1946 (2142)
T KOG0399|consen 1937 TDCIGTSVRH 1946 (2142)
T ss_pred             ccccccchhh
Confidence            6665554444

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.01  E-value=5.1e-05  Score=72.57  Aligned_cols=48  Identities=27%  Similarity=0.438  Sum_probs=37.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .+.++|+||||+|.+|+.+|..+. .+.+|+++++.........++.|.
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Gg   53 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGG   53 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhccc
Confidence            356899999999999999998885 478999999876544444455554

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.00  E-value=1.7e-05  Score=64.85  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+.|++|+|+||+||.+|..+.+.+.++.++|+..
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            347899999999999999999999999999999754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.00  E-value=0.00015  Score=70.20  Aligned_cols=43  Identities=33%  Similarity=0.461  Sum_probs=34.1

Q ss_pred             EEEEecCcchHHHHHHHHHCCCcEEEEeccC-CCCCCcccccCC
Q psy11185        106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI-PSPQGTTWGLGG  148 (312)
Q Consensus       106 ~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~-~~~~~~v~a~Gd  148 (312)
                      +||||+|.+|+.+|..+.+.|.+|+++++.. ......+++.|+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Gg   44 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGG   44 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhh
Confidence            5899999999999999999899999999876 322344566554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.99  E-value=4.2e-05  Score=70.16  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            346899999999999999999999999999999864

>PRK06184 hypothetical protein; Provisional

Probab=97.99  E-value=4.2e-05  Score=72.55  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+||+|+.+|..|.+.|.+++++|+...
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            47999999999999999999999999999998653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.98  E-value=0.00014  Score=69.38  Aligned_cols=32  Identities=41%  Similarity=0.698  Sum_probs=29.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +|++|||+|++|+.+|..+.+.+.++.+++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            59999999999999999999999999988865

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.98  E-value=4.1e-05  Score=70.09  Aligned_cols=37  Identities=41%  Similarity=0.539  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            3467999999999999999999999999999998654

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.96  E-value=0.00047  Score=63.33  Aligned_cols=34  Identities=32%  Similarity=0.622  Sum_probs=30.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      .+|++|||+|..|+++|..|.+.  +.+++++|+..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            37999999999999999999988  88999999864

>PRK08244 hypothetical protein; Provisional

Probab=97.94  E-value=5.7e-05  Score=71.51  Aligned_cols=35  Identities=34%  Similarity=0.623  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+||+|+.+|..|.+.|.+++++|+...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            47999999999999999999999999999998653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.93  E-value=6.3e-05  Score=69.49  Aligned_cols=38  Identities=24%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ....+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            45578999999999999999999999999999998654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.92  E-value=0.0002  Score=68.63  Aligned_cols=36  Identities=36%  Similarity=0.486  Sum_probs=32.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|+||||+| +|+.+|..+.+.|.+++++|+...
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~   49 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY   49 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            458999999999 899999999999999999998643

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.91  E-value=1.4e-05  Score=71.80  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      ++|++|||+|++|+.+|..|.+.|.+++++|+....
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            479999999999999999999999999999986543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.88  E-value=9.8e-05  Score=70.67  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~   43 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP   43 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            446899999999999999999999999999999865

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.88  E-value=0.00022  Score=72.97  Aligned_cols=115  Identities=15%  Similarity=0.042  Sum_probs=74.9

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      ++|+|+|..|++.|. .|+|+++. .+.        ..+.+.|++.||++++++.+.++..++ ....|.+.....    
T Consensus       327 ~~g~e~A~~L~~~G~~vV~vv~~~~~~~--------~~l~~~L~~~GV~i~~~~~v~~i~g~~-~v~~V~l~~~~g----  393 (985)
T TIGR01372       327 DSAYRAAADLLAAGIAVVAIIDARADVS--------PEARAEARELGIEVLTGHVVAATEGGK-RVSGVAVARNGG----  393 (985)
T ss_pred             HHHHHHHHHHHHcCCceEEEEccCcchh--------HHHHHHHHHcCCEEEcCCeEEEEecCC-cEEEEEEEecCC----
Confidence            589999999999995 68899874 332        234567888999999999999987432 212455542100    


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCCCcEEEEec----cCCCCCCcccccCCcc
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDY----VIPSPQGTTWGLGGTC  150 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~----~~~~~~~~v~a~Gd~~  150 (312)
                      ....+++|.|+++.|... ..++..+   +.++...+.    ...|+.+++|++||++
T Consensus       394 ~~~~i~~D~V~va~G~~Pnt~L~~~l---g~~~~~~~~~~~~~~~t~v~gVyaaGD~~  448 (985)
T TIGR01372       394 AGQRLEADALAVSGGWTPVVHLFSQR---GGKLAWDAAIAAFLPGDAVQGCILAGAAN  448 (985)
T ss_pred             ceEEEECCEEEEcCCcCchhHHHHhc---CCCeeeccccCceecCCCCCCeEEeeccC
Confidence            115689999999999633 3333222   222221111    1247789999999954

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06126 hypothetical protein; Provisional

Probab=97.88  E-value=0.00014  Score=69.73  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=33.6

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4567899999999999999999999999999999764

>PRK09126 hypothetical protein; Provisional

Probab=97.88  E-value=0.0002  Score=65.70  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            57999999999999999999999999999998653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.87  E-value=2.5e-05  Score=72.52  Aligned_cols=141  Identities=26%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV  184 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  184 (312)
                      |+||||+|++|+.+|..+++.|.+++++|+...  .++....|..+...+..... .................+.. .  
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~--lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~-~--   74 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF--LGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGY-P--   74 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS--STGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc--CCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccc-c--
Confidence            799999999999999999999999999997543  22222222211111111000 01111111111111110000 0  


Q ss_pred             cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eC---CeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQ---HSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~---~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                        .. +...........+..+...+...+.+.|++++..+ ....  +.   ..+.+.+.+| ..++.|+.+|.|||
T Consensus        75 --~~-~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   75 --QE-DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATG  147 (428)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             --cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence              00 00000000122233444555566677888886655 2221  22   2244444445 68999999999999

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.87  E-value=0.00014  Score=66.76  Aligned_cols=35  Identities=37%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      -++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            46899999999999999999999999999999754

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.87  E-value=0.00052  Score=65.46  Aligned_cols=52  Identities=38%  Similarity=0.537  Sum_probs=43.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      ...++|+||||+|.+|+.+|..+.+.+.+++++++........+.+.|+...
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a   54 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINA   54 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccc
Confidence            4568999999999999999999999999999999988776666666666543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.82  E-value=7.7e-05  Score=67.87  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCccc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTW  144 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~  144 (312)
                      |++|||+|++|+++|..+.+.  +.+++++|+.........|
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw   42 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW   42 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc
Confidence            799999999999999999876  8899999986543333444

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02661 Putative thiazole synthesis

Probab=97.81  E-value=0.00033  Score=62.46  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=31.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~  136 (312)
                      ...++|++|||+|++|+.+|..+.+. +.+++++|+..
T Consensus        89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            45678999999999999999999865 77899999754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.81  E-value=0.00045  Score=66.32  Aligned_cols=35  Identities=43%  Similarity=0.667  Sum_probs=32.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            57899999999999999999999999999999866

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.80  E-value=0.00041  Score=67.06  Aligned_cols=42  Identities=38%  Similarity=0.624  Sum_probs=32.6

Q ss_pred             cEEEEecCcchHHHHHHHH----HCCCcEEEEeccCCCCCCcccccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVIPSPQGTTWGLG  147 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~----~~~~~~~~ve~~~~~~~~~v~a~G  147 (312)
                      |+||||+|.+|+.+|..+.    +.|.+|+++++....... .++.|
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~-s~A~G   46 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSG-AVAQG   46 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCC-ccccc
Confidence            7999999999999999887    567799999986543322 24555

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.79  E-value=0.00037  Score=67.24  Aligned_cols=38  Identities=37%  Similarity=0.569  Sum_probs=33.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      ..++|+||||+|.+|+.+|..+.+.+.+++++|+....
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            35789999999999999999999999999999986543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.78  E-value=0.00015  Score=66.07  Aligned_cols=33  Identities=33%  Similarity=0.551  Sum_probs=30.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            789999999999999999999999999998764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.78  E-value=0.00013  Score=67.16  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|++|||+|++|+++|..|.+.|.+++++|+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            4799999999999999999999999999999764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.77  E-value=0.00014  Score=66.61  Aligned_cols=34  Identities=41%  Similarity=0.556  Sum_probs=31.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            3799999999999999999999999999999754

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.77  E-value=2.9e-05  Score=71.40  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             ccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      +|++|||+|++|+.+|..|.+.|  .+++++|+..
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            69999999999999999999875  7899999865

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.74  E-value=0.0019  Score=58.56  Aligned_cols=33  Identities=42%  Similarity=0.613  Sum_probs=30.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|++|||+|..|+++|..|.+.+.+++++|+..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.74  E-value=0.00073  Score=63.44  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             cceEEEeeceeeEEEEc--CCCee-EEEEeecc------ccc-----cCCCccccccEEEEecCcchHHHHHH-------
Q psy11185         63 GGVHFLHKCLPLSVTKL--ADGKL-KVQYKNVA------EVR-----QDNTHKYDYDLLVLGGGSGGLAAAKE-------  121 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~--~~~~~-~v~~~~~~------~~~-----~~~~~~~~~d~vivg~G~~gl~~a~~-------  121 (312)
                      ++|.|++...+.++...  +++.+ .+.+....      .++     .+...++++|.||++.|..+..+...       
T Consensus       288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~g  367 (491)
T PLN02852        288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRG  367 (491)
T ss_pred             ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcC
Confidence            58999999999999742  22333 34443110      011     11224689999999999753111110       


Q ss_pred             HHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185        122 AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus       122 ~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                      ........+.++...+|+.|++|++||+...
T Consensus       368 v~~n~~G~V~~d~~~~T~ipGvyAaGDi~~G  398 (491)
T PLN02852        368 VVPNVHGRVLSSASGADTEPGLYVVGWLKRG  398 (491)
T ss_pred             eeECCCceEEeCCCCccCCCCEEEeeeEecC
Confidence            1111112244555567999999999997654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.74  E-value=0.0002  Score=59.01  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCC----cc-----------chHHHH--H--HHHHHHhccceEEEeeceeeEEEEcC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPL----RG-----------FDQQMA--K--LICEEMAEGGVHFLHKCLPLSVTKLA   80 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l----~~-----------~~~~~~--~--~~~~~l~~~gi~~~~~~~v~~~~~~~   80 (312)
                      ..|+.+|..|++.+.+|+|+++....    ..           ......  +  .+.+++...++++++++++.++....
T Consensus         9 ~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~   88 (201)
T PF07992_consen    9 PAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPES   88 (201)
T ss_dssp             HHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEEST
T ss_pred             HHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccccccccccc
Confidence            46899999999999999999873211    00           011111  1  44455677899999999999987643


Q ss_pred             CCe----eEEEE-eeccccccCCCccccccEEEEecCc-------chH---------HHHHHHH----------------
Q psy11185         81 DGK----LKVQY-KNVAEVRQDNTHKYDYDLLVLGGGS-------GGL---------AAAKEAA----------------  123 (312)
Q Consensus        81 ~~~----~~v~~-~~~~~~~~~~~~~~~~d~vivg~G~-------~gl---------~~a~~~~----------------  123 (312)
                      ...    ..+.. ..++      ..++.+|.+|++.|.       .|.         ..+..+.                
T Consensus        89 ~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~  162 (201)
T PF07992_consen   89 KRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEF  162 (201)
T ss_dssp             TEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTT
T ss_pred             cccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccc
Confidence            310    11211 1111      157889999999993       221         1111111                


Q ss_pred             -------HCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185        124 -------AHGR-KVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus       124 -------~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                             +.+. ..+.+++.++++.++||++||++..
T Consensus       163 l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~  199 (201)
T PF07992_consen  163 LAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGI  199 (201)
T ss_dssp             STHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence                   1111 2367788889999999999997643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.72  E-value=0.001  Score=64.28  Aligned_cols=38  Identities=39%  Similarity=0.587  Sum_probs=34.2

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+.++|+||||+|.+|+++|..+.+.+.+++++|+...
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            45689999999999999999999999999999998654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.71  E-value=0.00028  Score=64.76  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            46999999999999999999999999999998654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.71  E-value=0.0003  Score=64.52  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            46999999999999999999999999999998654

>PRK08013 oxidoreductase; Provisional

Probab=97.71  E-value=0.00019  Score=66.10  Aligned_cols=35  Identities=37%  Similarity=0.594  Sum_probs=31.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            47999999999999999999999999999998654

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.70  E-value=0.0014  Score=61.52  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      ...++|++|||+|..|+++|..|.+.  +.+|+++|...
T Consensus        21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            35678999999999999999999987  77999999754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.67  E-value=0.00036  Score=57.42  Aligned_cols=36  Identities=36%  Similarity=0.582  Sum_probs=30.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|+|+||+|+.+|..|.+.+.++.++|+..
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~   50 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL   50 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence            457999999999999999999999999999999864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.67  E-value=5.3e-05  Score=69.41  Aligned_cols=33  Identities=33%  Similarity=0.488  Sum_probs=31.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ..|++|+|+|++|+.+|..|.+.|.++.++|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            469999999999999999999999999999986

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.67  E-value=0.0013  Score=62.58  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .++|+||||+| +|+++|..+.+.|.+|+++|+...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            47899999999 999999999999999999997654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.67  E-value=0.00018  Score=65.69  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCC-CcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.| .+++++|+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            7899999999999999999999 99999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12839 hypothetical protein; Provisional

Probab=97.66  E-value=0.0011  Score=63.90  Aligned_cols=38  Identities=42%  Similarity=0.656  Sum_probs=33.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+.++|++|||+|.+|+.+|..+.+.+.+++++|+...
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~   42 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST   42 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            45689999999999999999999999999999998643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.66  E-value=0.00018  Score=67.10  Aligned_cols=32  Identities=41%  Similarity=0.704  Sum_probs=29.3

Q ss_pred             ccEEEEecCcchHHHHHHHHH----CCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAA----HGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~----~~~~~~~ve~~  135 (312)
                      +|++|||+|++|+.+|..|.+    .|.+++++|+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            699999999999999999987    68899999984

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.65  E-value=0.00055  Score=62.82  Aligned_cols=35  Identities=43%  Similarity=0.587  Sum_probs=31.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +.|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            56999999999999999999999999999998653

>PRK07588 hypothetical protein; Provisional

Probab=97.63  E-value=0.00026  Score=64.88  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            789999999999999999999999999998643

>PLN02985 squalene monooxygenase

Probab=97.61  E-value=0.00013  Score=69.28  Aligned_cols=37  Identities=32%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ....+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3457899999999999999999999999999999754

>PRK06753 hypothetical protein; Provisional

Probab=97.61  E-value=0.00033  Score=63.78  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            789999999999999999999999999998653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.61  E-value=0.0003  Score=64.19  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=30.0

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +|++|||+|++|+.+|..|.+.|.+++++|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            58999999999999999999999999999975

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.58  E-value=0.0012  Score=63.33  Aligned_cols=38  Identities=32%  Similarity=0.545  Sum_probs=33.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+.++|+||||+|.+|+.+|..+.+.|.+++++|+...
T Consensus         4 ~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~   41 (557)
T PRK07843          4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH   41 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34579999999999999999999999999999998653

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.58  E-value=0.0047  Score=56.27  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=30.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|++|||+|..|+++|..|.+.+.+|+++|+..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            589999999999999999999999999999854

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.57  E-value=0.00015  Score=67.02  Aligned_cols=33  Identities=42%  Similarity=0.765  Sum_probs=28.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .+|++|||+|.+|+++|....+.|.+..++..+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            489999999999999999999999887665543

>PRK07045 putative monooxygenase; Reviewed

Probab=97.54  E-value=0.00024  Score=65.05  Aligned_cols=37  Identities=30%  Similarity=0.427  Sum_probs=33.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      ..+|++|||+|++|+.+|..|.+.|.+++++|+....
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            4679999999999999999999999999999986643

>PRK06185 hypothetical protein; Provisional

Probab=97.53  E-value=0.00017  Score=66.46  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3457899999999999999999999999999999764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.53  E-value=0.0027  Score=61.34  Aligned_cols=36  Identities=47%  Similarity=0.665  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~   45 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP   45 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            458899999999999999999999999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.52  E-value=0.00044  Score=63.41  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHC---CCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH---GRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~---~~~~~~ve~~  135 (312)
                      .+|++|||+|++|+.+|..|.+.   |.+++++|+.
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            57999999999999999999887   9999999984

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.52  E-value=0.0062  Score=56.20  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|++|||+|..|+++|..|.+.|.+++++|+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999865

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.52  E-value=0.00063  Score=65.32  Aligned_cols=37  Identities=32%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4678999999999999999999999999999998653

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.50  E-value=0.0055  Score=58.90  Aligned_cols=35  Identities=34%  Similarity=0.600  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~   39 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQD   39 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            47899999999999999999999999999999754

>KOG2820|consensus

Probab=97.50  E-value=0.0038  Score=54.60  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=31.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...|++|||+|.-|+++|..|.+++.+++++|...
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~   40 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP   40 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence            35699999999999999999999999999999654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.49  E-value=0.00051  Score=63.34  Aligned_cols=33  Identities=27%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            579999999999999999999999999999975

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.48  E-value=0.0036  Score=56.97  Aligned_cols=34  Identities=41%  Similarity=0.552  Sum_probs=31.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|++|||+|..|+++|..|.+.+.+++++|+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            5799999999999999999999999999999764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.47  E-value=0.0054  Score=58.43  Aligned_cols=114  Identities=24%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC-------------------------------ccc-----------hHHHHHHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL-------------------------------RGF-----------DQQMAKLI   56 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l-------------------------------~~~-----------~~~~~~~~   56 (312)
                      ..|+-+|..|.+.|.+++++|++ .+-                               +.|           ..++.+|+
T Consensus        11 ~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl   90 (531)
T PF00743_consen   11 PSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYL   90 (531)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHH
Confidence            36888889999999999999984 442                               001           27888898


Q ss_pred             HHHHhccce--EEEeeceeeEEEEcCC----CeeEEEE----------------eeccc--cccCC----C---------
Q psy11185         57 CEEMAEGGV--HFLHKCLPLSVTKLAD----GKLKVQY----------------KNVAE--VRQDN----T---------   99 (312)
Q Consensus        57 ~~~l~~~gi--~~~~~~~v~~~~~~~~----~~~~v~~----------------~~~~~--~~~~~----~---------   99 (312)
                      +...+.-++  .+++|++|.+++..++    +.-.|+.                .+|--  +.-|.    .         
T Consensus        91 ~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~  170 (531)
T PF00743_consen   91 ESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEII  170 (531)
T ss_dssp             HHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEE
T ss_pred             HHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEE
Confidence            887776555  5778999999886443    2223322                22210  00010    0         


Q ss_pred             --------c-cccccEEEEecCcchHHHHHHHHHCCCcEEEEe
Q psy11185        100 --------H-KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD  133 (312)
Q Consensus       100 --------~-~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve  133 (312)
                              + -....++|||+|.+|..+|..+.....++.+.-
T Consensus       171 HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~  213 (531)
T PF00743_consen  171 HSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLST  213 (531)
T ss_dssp             EGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEEC
T ss_pred             ccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEE
Confidence                    1 112458888888888888888876665655543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00367 squalene epoxidase; Provisional

Probab=97.46  E-value=0.00015  Score=69.39  Aligned_cols=36  Identities=39%  Similarity=0.780  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            347899999999999999999999999999999754

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.45  E-value=0.0065  Score=59.75  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+|.+|+++|..|.+.|.+|+++|+..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3699999999999999999999999999999763

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.40  E-value=0.0087  Score=56.93  Aligned_cols=35  Identities=40%  Similarity=0.634  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|+||||+|..|+++|..+...|.+++++|+..
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35899999999999999999999999999999853

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.38  E-value=0.0075  Score=55.03  Aligned_cols=36  Identities=36%  Similarity=0.501  Sum_probs=32.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..+|++|||+|..|+++|..|.+.|.+++++|....
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            367999999999999999999999999999997664

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.37  E-value=0.0055  Score=59.20  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=32.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~   49 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE   49 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            347899999999999999999999999999999754

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.37  E-value=0.0013  Score=61.53  Aligned_cols=55  Identities=15%  Similarity=0.237  Sum_probs=36.0

Q ss_pred             HhhHHHHHHHhcCCceEEeceeEEee---CC-eEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        204 SVNWVTRVMLRDKKVDYLNALGKFID---QH-SVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       204 ~~~~~~~~~~~~~gV~~~~~~~~~~~---~~-~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .|...+...+.+.||+++.+++..+.   .. ...+++.+|  .++.+|.+|.|||....+
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLL  213 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CC
T ss_pred             HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchh
Confidence            34444566677889999988754332   22 346788888  789999999999965544

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.35  E-value=0.0012  Score=58.99  Aligned_cols=54  Identities=19%  Similarity=0.232  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                      ..+.+.+.+.+++.||++++++++.+++.++ ....+...++        +++.+|.+|++.|
T Consensus       111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~f~l~t~~g--------~~i~~d~lilAtG  164 (408)
T COG2081         111 SPIVDALLKELEALGVTIRTRSRVSSVEKDD-SGFRLDTSSG--------ETVKCDSLILATG  164 (408)
T ss_pred             HHHHHHHHHHHHHcCcEEEecceEEeEEecC-ceEEEEcCCC--------CEEEccEEEEecC
Confidence            6788999999999999999999999998754 3356666655        4789999999999

>PRK07236 hypothetical protein; Provisional

Probab=97.33  E-value=0.0018  Score=59.26  Aligned_cols=34  Identities=32%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4689999999999999999999999999999764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.30  E-value=0.0065  Score=57.37  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      ....+|+||||+|..|+++|..|.+.+  .+++++|+..
T Consensus        42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            445799999999999999999998853  4799999863

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.29  E-value=0.0089  Score=55.21  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      |++|||+|..|+++|..+.+.+.+|+++|+..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            78999999999999999999999999999864

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.24  E-value=0.0029  Score=61.72  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~  136 (312)
                      .++|++|||+||+|+.+|..|.+. |.++.++|+..
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            368999999999999999999994 99999999754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.23  E-value=0.0026  Score=59.26  Aligned_cols=30  Identities=43%  Similarity=0.638  Sum_probs=27.2

Q ss_pred             EEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       108 ivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            689999999999999999999999998653

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05868 hypothetical protein; Validated

Probab=97.20  E-value=0.0021  Score=58.61  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|+|+|++|+.+|..|.+.|.+++++|+...
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            799999999999999999999999999998643

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.20  E-value=0.015  Score=55.33  Aligned_cols=36  Identities=39%  Similarity=0.617  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+|..|..+|..+...|.+++++|+..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            345899999999999999999999999999999763

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.19  E-value=0.0016  Score=59.93  Aligned_cols=56  Identities=27%  Similarity=0.368  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                      ..++.+.+.+.+++.||+++++++|.+++..+++...|.+.+.        ..+.+|.||++.|
T Consensus       108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--------~~~~a~~vILAtG  163 (409)
T PF03486_consen  108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--------GEYEADAVILATG  163 (409)
T ss_dssp             HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--------EEEEESEEEE---
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--------ccccCCEEEEecC
Confidence            4778889999999999999999999999876555456666332        5789999999988

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.16  E-value=0.02  Score=52.60  Aligned_cols=60  Identities=15%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHH--------------HHHHHHHHhccceEEEeeceeeEEEE
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQM--------------AKLICEEMAEGGVHFLHKCLPLSVTK   78 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~--------------~~~~~~~l~~~gi~~~~~~~v~~~~~   78 (312)
                      -..|+++|..|+++|.+|+|+|+..-+.+.-.++              .-...+.-...+|++++.++|+++..
T Consensus       133 GvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~G  206 (622)
T COG1148         133 GVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEVSG  206 (622)
T ss_pred             cHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeeeecc
Confidence            3579999999999999999999843232211111              11112233346899999999998764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.16  E-value=0.038  Score=53.12  Aligned_cols=36  Identities=25%  Similarity=0.549  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+|++|||+|..|+++|..|.+.|.+++++|+..
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            346899999999999999999999999999999753

>KOG2311|consensus

Probab=97.16  E-value=0.0025  Score=58.17  Aligned_cols=139  Identities=19%  Similarity=0.277  Sum_probs=71.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC-----CCCcccccCCc--cc---ccccchhhHHHHHHHHHHHH
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS-----PQGTTWGLGGT--CV---NVGCIPKKLMHQAALLGEAI  171 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~-----~~~~v~a~Gd~--~~---~~~~~~~~~~~~a~~~~~~~  171 (312)
                      -.+|+||||+|.+|..+|....+.|.+.+.+..+..+     .+|.+=.+|-.  +.   ..+......-..+..+.+.+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L  106 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL  106 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence            3689999999999999999999999887666544321     22221111100  00   00011112223334444444


Q ss_pred             HHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe---eC---C--eEEEEecCCCeE
Q psy11185        172 KDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI---DQ---H--SVEATMKNGEKK  243 (312)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~---~~---~--~~~v~~~~G~~~  243 (312)
                      ........+.+   ...+|...+...++......          .+.++..+.+...   ++   .  ...|.+.+|  .
T Consensus       107 Nrs~GPAVwg~---RAQiDR~lYkk~MQkei~st----------~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dg--t  171 (679)
T KOG2311|consen  107 NRSKGPAVWGL---RAQIDRKLYKKNMQKEISST----------PNLEIREGAVADLIVEDPDDGHCVVSGVVLVDG--T  171 (679)
T ss_pred             hccCCCcccCh---HHhhhHHHHHHHHHHHhccC----------CcchhhhhhhhheeeccCCCCceEEEEEEEecC--c
Confidence            44332222212   23456666666655443221          1233332221110   11   1  233567888  8


Q ss_pred             EEEcCeEEEccC
Q psy11185        244 TLTAENILIATG  255 (312)
Q Consensus       244 ~i~ad~vVlAtG  255 (312)
                      .+.|+.||+.||
T Consensus       172 ~v~a~~VilTTG  183 (679)
T KOG2311|consen  172 VVYAESVILTTG  183 (679)
T ss_pred             EeccceEEEeec
Confidence            899999999999

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.06  E-value=0.0063  Score=56.02  Aligned_cols=33  Identities=36%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      -+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            378999999999999999999999999999764

>PRK06996 hypothetical protein; Provisional

Probab=97.01  E-value=0.0022  Score=59.04  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCC----CcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHG----RKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~----~~~~~ve~~~  136 (312)
                      ....+|++|||+||+|+.+|..|.+.+    .+++++|...
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            445789999999999999999998876    3699999754

>KOG1346|consensus

Probab=97.01  E-value=0.0014  Score=58.83  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             hhhhhhHh----hhccCCeEEE-EEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecccc
Q psy11185         21 SGLECAGF----LNGLGFNATV-MIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEV   94 (312)
Q Consensus        21 ig~E~A~~----l~~~g~~vtl-~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~   94 (312)
                      +|-|+|-.    ....|.+|+= |+.. ..-+-+...++++-.+.+++.||.++.|..|+++..... .+.+.+.+|   
T Consensus       358 lgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-nl~lkL~dG---  433 (659)
T KOG1346|consen  358 LGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-NLVLKLSDG---  433 (659)
T ss_pred             hhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-ceEEEecCC---
Confidence            45555544    4446888874 4432 222224456778888999999999999999999876433 367888887   


Q ss_pred             ccCCCccccccEEEEecCc-chHHHHH--HH-HHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185         95 RQDNTHKYDYDLLVLGGGS-GGLAAAK--EA-AAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus        95 ~~~~~~~~~~d~vivg~G~-~gl~~a~--~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                           .++..|+||++.|- ....++.  .| .+.......++..++ -..++|++||..
T Consensus       434 -----~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~-ar~NvwvAGdaa  487 (659)
T KOG1346|consen  434 -----SELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELK-ARENVWVAGDAA  487 (659)
T ss_pred             -----CeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheee-cccceeeecchh
Confidence                 67899999999994 2222221  11 122333455565443 356899999964

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.97  E-value=0.032  Score=51.38  Aligned_cols=36  Identities=42%  Similarity=0.591  Sum_probs=31.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC-CC-cEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH-GR-KVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~-~~-~~~~ve~~~  136 (312)
                      ...+|++|||+|..|+++|..|.+. +. +++++|+..
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            3468999999999999999999985 74 899999754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.92  E-value=0.053  Score=49.92  Aligned_cols=34  Identities=35%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      .+|++|||+|..|++++..|.+.+  .++.++|+..
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~   38 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED   38 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            579999999999999999999888  7899999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.90  E-value=0.0011  Score=46.08  Aligned_cols=27  Identities=26%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++|||||++|+|.|..+...+.+|||
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtl   27 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTL   27 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEE
Confidence            689999999999999999999889886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.90  E-value=0.0047  Score=57.11  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=28.5

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      +++|||+|++|+++|..|.+.+. +++++|+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~   34 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP   34 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            58999999999999999998874 899999854

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2404|consensus

Probab=96.89  E-value=0.0082  Score=52.28  Aligned_cols=36  Identities=31%  Similarity=0.497  Sum_probs=31.1

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ  140 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~  140 (312)
                      .+||||+|.+|++++..+...+..++++|+.....-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG   46 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG   46 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence            789999999999999999998888999998665433

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.88  E-value=0.0045  Score=51.00  Aligned_cols=85  Identities=22%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             hhhhhhhHhhhccCCe-EEEEEcc-CCC--------------cc-----------------------------chHHHHH
Q psy11185         20 DSGLECAGFLNGLGFN-ATVMIRS-VPL--------------RG-----------------------------FDQQMAK   54 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~-vtl~~~~-~~l--------------~~-----------------------------~~~~~~~   54 (312)
                      ..|+-+|..|.+.|.+ ++|+|+. .+.              +.                             .-+++.+
T Consensus         7 ~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   86 (203)
T PF13738_consen    7 PAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGEEVLD   86 (203)
T ss_dssp             HHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCCHHHHHH
Confidence            4789999999999999 9999984 542              00                             0156678


Q ss_pred             HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      |+++..++.+++++++++|++++.++++ ..|.+.++        .++.+|.||++.|.
T Consensus        87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~--------~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   87 YLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDG--------RTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS---------EEEEEEEEE---S
T ss_pred             HHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEec--------ceeeeeeEEEeeec
Confidence            8888888899999999999999987655 56777654        46789999999995

...

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.84  E-value=0.024  Score=51.46  Aligned_cols=54  Identities=15%  Similarity=0.177  Sum_probs=36.7

Q ss_pred             HhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        204 SVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       204 ~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      .....+...+++.||++...+ +..++...+.+.+.++ ...+.||+||+|||+.+
T Consensus        87 sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        87 PLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence            333445667888999997665 5455444566665433 14699999999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1298|consensus

Probab=96.77  E-value=0.0032  Score=56.01  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=33.2

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+..+|++|||+|.+|.++|..|.+.|.++.++|+..
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            3457899999999999999999999999999999765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.76  E-value=0.072  Score=50.34  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=29.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEec
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDY  134 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~  134 (312)
                      ..+|+||||+|.+|.++|..|.+.  +.+++++|+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            357999999999999999999887  678999998

>KOG3851|consensus

Probab=96.74  E-value=0.0016  Score=56.53  Aligned_cols=46  Identities=17%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             eEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCC
Q psy11185        219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGA  266 (312)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~  266 (312)
                      +++...+...+++.-++.+.+|  ++|.||++|||+|.+-+.-.++|+
T Consensus       108 ~wi~ekv~~f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl  153 (446)
T KOG3851|consen  108 TWIKEKVKEFNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGL  153 (446)
T ss_pred             HHHHHHHHhcCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcCh
Confidence            3333333445667778888899  899999999999976655555555

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.68  E-value=0.0057  Score=59.49  Aligned_cols=35  Identities=37%  Similarity=0.531  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      -..+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            35799999999999999999999999999999754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=96.61  E-value=0.016  Score=50.60  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCc---------------------------------------------------cc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLR---------------------------------------------------GF   48 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~---------------------------------------------------~~   48 (312)
                      ..|+-+|..|++.|.+|+|+|+....+                                                   -.
T Consensus        10 ~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   89 (295)
T TIGR02032        10 PAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIETELAYVID   89 (295)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccCCCcEEEEE
Confidence            468899999999999999999842110                                                   01


Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      -..+.+.+.+.+.+.|++++.+++++++..+++ .+.+.+.++.       ..+++|.||.+.|...
T Consensus        90 r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~~~~~~~~~-------~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        90 RDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RVVVIVRGGE-------GTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EEEEEEcCcc-------EEEEeCEEEECCCcch
Confidence            235667777888889999999999999876443 3445444321       4688999999999754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06847 hypothetical protein; Provisional

Probab=96.59  E-value=0.015  Score=52.87  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      +++.+.+.+.+++.|+++++++++++++..++ .+.+.+.++        .++.+|.||.+.|..
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~g--------~~~~ad~vI~AdG~~  162 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDD-GVTVTFSDG--------TTGRYDLVVGADGLY  162 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EEEEEEcCC--------CEEEcCEEEECcCCC
Confidence            35566777777778999999999999876443 356666554        467899999999963

>KOG2853|consensus

Probab=96.35  E-value=0.068  Score=47.11  Aligned_cols=53  Identities=26%  Similarity=0.494  Sum_probs=39.6

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC----CCcEEEEeccC-CCCCCcccccCCcccc
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVI-PSPQGTTWGLGGTCVN  152 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~-~~~~~~v~a~Gd~~~~  152 (312)
                      ....+|++|||+|-+|.+.|..|.++    +.+++++|... -+...-....|+.|..
T Consensus        83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ  140 (509)
T KOG2853|consen   83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ  140 (509)
T ss_pred             cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence            34579999999999999999988643    56789999653 3444555677887754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.34  E-value=0.045  Score=50.01  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=67.4

Q ss_pred             HhhhccCCeEEEEEc--cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccc
Q psy11185         27 GFLNGLGFNATVMIR--SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDY  104 (312)
Q Consensus        27 ~~l~~~g~~vtl~~~--~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  104 (312)
                      ..+...|+..-++.-  +++-...-+.+.+-+.+.|++.|++++++++|..++...+....+.+.++        .++++
T Consensus       148 ~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--------~~i~~  219 (486)
T COG2509         148 IEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--------EEIEA  219 (486)
T ss_pred             HHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--------cEEec
Confidence            344445555555553  45556667888888899999999999999999998865444345666665        68999


Q ss_pred             cEEEEecCcchHHHHHHHHHC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH  125 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~  125 (312)
                      |.||++-|++|-..-..+.++
T Consensus       220 ~~vvlA~Grsg~dw~~~l~~K  240 (486)
T COG2509         220 DYVVLAPGRSGRDWFEMLHKK  240 (486)
T ss_pred             CEEEEccCcchHHHHHHHHHh
Confidence            999999999987766666544

>KOG2614|consensus

Probab=96.33  E-value=0.045  Score=49.40  Aligned_cols=32  Identities=34%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|+|+|.+|+..|..+.+.|.++++.|...
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    4 KVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            78999999999999999999999999999843

>PRK07236 hypothetical protein; Provisional

Probab=96.14  E-value=0.017  Score=52.85  Aligned_cols=87  Identities=20%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCcc------chHHHHHHHHH----------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRG------FDQQMAKLICE----------------------------------   58 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~------~~~~~~~~~~~----------------------------------   58 (312)
                      ..|+.+|..|++.|.+|+|+|+. ..++.      +.+...+.+.+                                  
T Consensus        16 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   95 (386)
T PRK07236         16 LGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGRVVQRRPMPQT   95 (386)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCCEeeccCCCcc
Confidence            46899999999999999999984 33321      23332222221                                  


Q ss_pred             ---------HHhc--cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         59 ---------EMAE--GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        59 ---------~l~~--~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                               .|.+  .++++++++++++++...+ .+.+.+.++        .++.+|+||.+-|...
T Consensus        96 ~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vIgADG~~S  154 (386)
T PRK07236         96 QTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RVTARFADG--------RRETADLLVGADGGRS  154 (386)
T ss_pred             ccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eEEEEECCC--------CEEEeCEEEECCCCCc
Confidence                     1111  1356888999999986543 366777665        4678999999989633

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.13  E-value=0.0074  Score=56.19  Aligned_cols=75  Identities=23%  Similarity=0.300  Sum_probs=57.0

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CC---C----cc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEee
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VP---L----RG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKN   90 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~---l----~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~   90 (312)
                      -|+.+|..|++.|+.||++++. ..   |    |.  +++++.+...+.|+++||+|++|+++-.-         ++++.
T Consensus       134 AGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~---------it~~~  204 (457)
T COG0493         134 AGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD---------ITLEE  204 (457)
T ss_pred             hHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc---------CCHHH
Confidence            6899999999999999999983 32   1    22  57899999999999999999999877531         22211


Q ss_pred             ccccccCCCccccccEEEEecCc
Q psy11185         91 VAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        91 ~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                               ..-++|.|++++|.
T Consensus       205 ---------L~~e~Dav~l~~G~  218 (457)
T COG0493         205 ---------LLKEYDAVFLATGA  218 (457)
T ss_pred             ---------HHHhhCEEEEeccc
Confidence                     12356999999883

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=96.08  E-value=0.12  Score=44.52  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCcc--------------------------------------chHHHHHHHHHHHh
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLRG--------------------------------------FDQQMAKLICEEMA   61 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~--------------------------------------~~~~~~~~~~~~l~   61 (312)
                      .|+-+|..|++.|.+|+|+|+. .+-.+                                      ...++...+.+...
T Consensus        36 AGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~  115 (257)
T PRK04176         36 SGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI  115 (257)
T ss_pred             HHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH
Confidence            5788899999999999999983 32100                                      12355566777777


Q ss_pred             ccceEEEeeceeeEEEEcCCCee-EEEEeecc---ccccCCCccccccEEEEecCcchHHHH
Q psy11185         62 EGGVHFLHKCLPLSVTKLADGKL-KVQYKNVA---EVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~---~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      +.|++++.++.+..+...+++.+ .+.+....   .+.......+.++.||.++|..+....
T Consensus       116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~  177 (257)
T PRK04176        116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVS  177 (257)
T ss_pred             HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHH
Confidence            88999999999998875444222 33332110   000001146889999999997665443

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.00  E-value=0.01  Score=39.79  Aligned_cols=30  Identities=37%  Similarity=0.452  Sum_probs=26.5

Q ss_pred             EEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       108 ivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |||+|++|+.+|..+.+.+.+++++|+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999998653

...

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.99  E-value=0.31  Score=46.09  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+|..|+.+|..++..|.+++++|+.-
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D   45 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD   45 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence            368999999999999999999999999999999753

>TIGR00275 flavoprotein, HI0933 family

Probab=95.99  E-value=0.045  Score=50.43  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             hhhHhhhccCCeEEEEEccCCCcc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCcc
Q psy11185         24 ECAGFLNGLGFNATVMIRSVPLRG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK  101 (312)
Q Consensus        24 E~A~~l~~~g~~vtl~~~~~~l~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (312)
                      ++..++.++|.++++.+..++++.  ...++.+.+.+.+++.|+++++++.+.+++... +.+.+.. ++        ..
T Consensus        77 d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~~v~~-~~--------~~  146 (400)
T TIGR00275        77 DLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-NGFGVET-SG--------GE  146 (400)
T ss_pred             HHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CeEEEEE-CC--------cE
Confidence            455778889999888765565543  468889999999999999999999999987643 3234443 22        35


Q ss_pred             ccccEEEEecCc
Q psy11185        102 YDYDLLVLGGGS  113 (312)
Q Consensus       102 ~~~d~vivg~G~  113 (312)
                      +.+|.||++.|.
T Consensus       147 i~ad~VIlAtG~  158 (400)
T TIGR00275       147 YEADKVILATGG  158 (400)
T ss_pred             EEcCEEEECCCC
Confidence            789999999995

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.90  E-value=0.01  Score=56.14  Aligned_cols=35  Identities=46%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|+||||+|..||.+|..|++.|.+|.++|++..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~   37 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR   37 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence            47999999999999999999999999999997653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.83  E-value=0.072  Score=47.59  Aligned_cols=62  Identities=21%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+.+.+.+.+++.|+++++++++..++.+.++ +.+.+.+...+..   .++++|+||-+-|...
T Consensus       111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~---~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEE---ETIEADLVVGADGAHS  172 (356)
T ss_dssp             HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEE---EEEEESEEEE-SGTT-
T ss_pred             HHHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCce---eEEEEeeeecccCccc
Confidence            567788888888899999999999998876554 4555544422211   4689999999999644

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.78  E-value=0.044  Score=51.76  Aligned_cols=47  Identities=21%  Similarity=0.167  Sum_probs=36.0

Q ss_pred             hhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeecee
Q psy11185         21 SGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLP   73 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v   73 (312)
                      +|+++|..|.++|++|++++++.      .+....+.+.|++.||+++++..+
T Consensus        27 ~G~~~A~~L~~~G~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~   73 (480)
T PRK01438         27 SGFAAADALLELGARVTVVDDGD------DERHRALAAILEALGATVRLGPGP   73 (480)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCc
Confidence            89999999999999999999742      122234566688889999877543

>TIGR00292 thiazole biosynthesis enzyme

Probab=95.77  E-value=0.2  Score=43.03  Aligned_cols=100  Identities=17%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC----------------------------c----------cchHHHHHHHHHHHh
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL----------------------------R----------GFDQQMAKLICEEMA   61 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l----------------------------~----------~~~~~~~~~~~~~l~   61 (312)
                      .|+-+|..|++.|.+|+|+||. .+-                            +          ....++...+.+...
T Consensus        32 AGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~  111 (254)
T TIGR00292        32 SGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEFISTLASKAL  111 (254)
T ss_pred             HHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHHHHHHHHHHH
Confidence            6788999999999999999984 321                            0          012456667777778


Q ss_pred             ccceEEEeeceeeEEEEcCCC--eeEEEEeeccccc---cCCCccccccEEEEecCcchHHHHH
Q psy11185         62 EGGVHFLHKCLPLSVTKLADG--KLKVQYKNVAEVR---QDNTHKYDYDLLVLGGGSGGLAAAK  120 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~--~~~v~~~~~~~~~---~~~~~~~~~d~vivg~G~~gl~~a~  120 (312)
                      +.|++++.++.+..+...++.  ...+.+.......   ......+.++.||.++|..+.....
T Consensus       112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~  175 (254)
T TIGR00292       112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV  175 (254)
T ss_pred             HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence            889999999999998764442  2244442211000   0011468899999999976644443

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=95.77  E-value=0.14  Score=46.64  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             hhhhhhHhhhccCCeEEEEE-c-cCCC---------------------------------------------------c-
Q psy11185         21 SGLECAGFLNGLGFNATVMI-R-SVPL---------------------------------------------------R-   46 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~-~-~~~l---------------------------------------------------~-   46 (312)
                      .|+|+|..++++|.+|.|+. . +.+.                                                   . 
T Consensus        10 AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~skGpav~a~r   89 (392)
T PF01134_consen   10 AGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRSKGPAVHALR   89 (392)
T ss_dssp             HHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTTS-GGCTEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccccCCCCccchH
Confidence            58999999999999999994 3 2332                                                   0 


Q ss_pred             -cch-HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------
Q psy11185         47 -GFD-QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------  113 (312)
Q Consensus        47 -~~~-~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------  113 (312)
                       ..| ..+.+++.+.+++ .+|+++ ..+|+.+....+....|.+.++        ..+.+|.||+++|+          
T Consensus        90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGtfl~G~~~iG~  160 (392)
T PF01134_consen   90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGTFLNGCIHIGE  160 (392)
T ss_dssp             EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTTGBTSEEEETT
T ss_pred             hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCC--------CEEecCEEEEecccccCceeeeee
Confidence             012 3444555566666 689996 6788888764443346666655        57899999999998          


Q ss_pred             -----------chHHHHHHHHHCCCc
Q psy11185        114 -----------GGLAAAKEAAAHGRK  128 (312)
Q Consensus       114 -----------~gl~~a~~~~~~~~~  128 (312)
                                 +...++..+.+.+..
T Consensus       161 ~~~~~Gr~ge~~s~~l~~~L~~~g~~  186 (392)
T PF01134_consen  161 RCPPGGRRGELTSDGLSESLRKLGFE  186 (392)
T ss_dssp             EEEECSCTTCC-BCHHHHHHHHTTGG
T ss_pred             cccccCCCccccchHHHHHHHhhCCc
Confidence                       344566667666654

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.76  E-value=0.0083  Score=59.94  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      +++|||+|++|+.+|..+.+.  +.+++++|+..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~   35 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR   35 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            589999999999999999887  77999999765

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=95.75  E-value=0.012  Score=56.81  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             hhhhhhHhhhccCCeEEEEEc-cCCCccch--------------HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-
Q psy11185         21 SGLECAGFLNGLGFNATVMIR-SVPLRGFD--------------QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-   84 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-   84 (312)
                      ++.|++.+++.++.+++++.+ ..+++.++              .++.+.+.+.+++.||++++++.++++..+ ++.+ 
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~  248 (574)
T PRK12842        170 SNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVV  248 (574)
T ss_pred             chHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEE
Confidence            688999999999999999887 46666544              457777888888999999999999998864 3433 


Q ss_pred             EEEEeeccccccCCCcccccc-EEEEecCc
Q psy11185         85 KVQYKNVAEVRQDNTHKYDYD-LLVLGGGS  113 (312)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~d-~vivg~G~  113 (312)
                      .+.+.+...     ...+.++ .||+++|.
T Consensus       249 GV~~~~~~~-----~~~i~a~k~VVlAtGg  273 (574)
T PRK12842        249 GARVIDAGG-----ERRITARRGVVLACGG  273 (574)
T ss_pred             EEEEEcCCc-----eEEEEeCCEEEEcCCC
Confidence            455543211     0245675 78888885

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.37  E-value=0.31  Score=47.12  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             HHHHHhcCCceEEece-eE-Ee-e-CCeE-EE---EecCCCeEEEEcCeEEEccCCCC
Q psy11185        209 TRVMLRDKKVDYLNAL-GK-FI-D-QHSV-EA---TMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       209 ~~~~~~~~gV~~~~~~-~~-~~-~-~~~~-~v---~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      +...+.+.+|+++..+ .. .+ + ..++ -+   ...+|+...+.|+.||||||+..
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            4445566789987775 22 22 2 2222 22   33577777899999999999654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.35  E-value=0.02  Score=54.27  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=31.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .|+||||+|.+||.+|..|.+.|.+++++|++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~   35 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ   35 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4899999999999999999999999999998743

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=95.29  E-value=0.021  Score=54.09  Aligned_cols=34  Identities=44%  Similarity=0.773  Sum_probs=31.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +|+||||+|.+|+.+|..|.+.|.+++++|++..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~   34 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI   34 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            5899999999999999999999999999998653

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.21  E-value=0.14  Score=46.92  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=36.3

Q ss_pred             HHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         54 KLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        54 ~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+. +|++++++++++++.+++ .+.+.+.++        ..+.+|.||.+.|...
T Consensus       113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vV~AdG~~S  166 (396)
T PRK08163        113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GVTVFDQQG--------NRWTGDALIGCDGVKS  166 (396)
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEecCCC-ceEEEEcCC--------CEEecCEEEECCCcCh
Confidence            3344444444 499999999999875433 355555544        4678999999999644

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.18  E-value=0.085  Score=47.94  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=58.1

Q ss_pred             hhhHhhhccCCeEEEEEc-cCCCc--cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCc
Q psy11185         24 ECAGFLNGLGFNATVMIR-SVPLR--GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTH  100 (312)
Q Consensus        24 E~A~~l~~~g~~vtl~~~-~~~l~--~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (312)
                      ++-.+|.++|.... .|+ .+++|  .-..++.+.+.+.+++.||++++++.|+.++  .++ ..+.+..+.       .
T Consensus        58 d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~~v~~~~~~-------~  126 (376)
T TIGR03862        58 ALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-LRFETPDGQ-------S  126 (376)
T ss_pred             HHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-EEEEECCCc-------e
Confidence            34577888888743 555 47775  3578999999999999999999999999983  222 445543221       3


Q ss_pred             cccccEEEEecCc
Q psy11185        101 KYDYDLLVLGGGS  113 (312)
Q Consensus       101 ~~~~d~vivg~G~  113 (312)
                      .+.+|.||+++|-
T Consensus       127 ~~~a~~vIlAtGG  139 (376)
T TIGR03862       127 TIEADAVVLALGG  139 (376)
T ss_pred             EEecCEEEEcCCC
Confidence            5789999999993

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.12  E-value=0.024  Score=54.55  Aligned_cols=87  Identities=15%  Similarity=0.035  Sum_probs=60.0

Q ss_pred             hhhhhhHh-------hhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecc
Q psy11185         21 SGLECAGF-------LNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVA   92 (312)
Q Consensus        21 ig~E~A~~-------l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~   92 (312)
                      +++|++..       +.++|.+|++++. ...+..+...+...+.+.+++.||++++++.++++..+++....+.....+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g  250 (557)
T PRK07843        171 VWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESG  250 (557)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCC
Confidence            46677665       7778888888776 355566777788888899999999999999999998643322334443221


Q ss_pred             ccccCCCcccccc-EEEEecC
Q psy11185         93 EVRQDNTHKYDYD-LLVLGGG  112 (312)
Q Consensus        93 ~~~~~~~~~~~~d-~vivg~G  112 (312)
                      .     ...+.++ .||+++|
T Consensus       251 ~-----~~~i~A~~~VIlAtG  266 (557)
T PRK07843        251 E-----PQLIRARRGVILASG  266 (557)
T ss_pred             c-----EEEEEeceeEEEccC
Confidence            1     1346674 5777665

>KOG0029|consensus

Probab=95.04  E-value=0.027  Score=53.14  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=32.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...+|||||+|.+|+++|.+|.+.|.+|+++|...+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR   49 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR   49 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence            467999999999999999999999999999997544

>PRK06834 hypothetical protein; Provisional

Probab=95.04  E-value=0.16  Score=48.03  Aligned_cols=52  Identities=17%  Similarity=0.189  Sum_probs=38.3

Q ss_pred             HHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         53 AKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        53 ~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+++.||+++.+++++.++.++++ +.+.+.++        .++.+|.||.+.|.
T Consensus       103 e~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g--------~~i~a~~vVgADG~  154 (488)
T PRK06834        103 ERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDG--------RTLRAQYLVGCDGG  154 (488)
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCC
Confidence            344556667779999999999999875443 55555443        46789999999996

>PLN02463 lycopene beta cyclase

Probab=94.94  E-value=0.17  Score=47.31  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC-cc--------------------------------------------chHHHHH
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL-RG--------------------------------------------FDQQMAK   54 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l-~~--------------------------------------------~~~~~~~   54 (312)
                      .|+.+|..|++.|.+|.|+|++ ... +.                                            ....+.+
T Consensus        39 AGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~  118 (447)
T PLN02463         39 AGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKS  118 (447)
T ss_pred             HHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHH
Confidence            6778889999999999999983 211 10                                            0123345


Q ss_pred             HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .+.+++.+.||+++ .++|++++..+ +...|.+.++        .++.+|.||.+.|...
T Consensus       119 ~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~~~V~~~dG--------~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        119 KMLERCIANGVQFH-QAKVKKVVHEE-SKSLVVCDDG--------VKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHhhcCCEEE-eeEEEEEEEcC-CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence            56666677899996 57888887643 3356666554        4789999999999754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=94.94  E-value=0.032  Score=50.76  Aligned_cols=32  Identities=25%  Similarity=0.555  Sum_probs=29.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +|++|||+|++|+.+|..+.+.|.+++++|+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~   33 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR   33 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            58999999999999999999888899999974

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.90  E-value=0.1  Score=48.10  Aligned_cols=68  Identities=15%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185         50 QQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK  120 (312)
Q Consensus        50 ~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~  120 (312)
                      -.+.+.+.+.+.+. |++++++++|+.++...++.-.|...+..++..   ..+.++.|+||+|-..|.++.
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~---~~v~a~FVfvGAGG~aL~LLq  249 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEK---REVRAKFVFVGAGGGALPLLQ  249 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCe---EEEECCEEEECCchHhHHHHH
Confidence            45556666667666 999999999999999877755666655332222   578999999999976665543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=94.83  E-value=0.11  Score=48.00  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA  122 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~  122 (312)
                      .++...+.+.+.++|+++++|++|..+++..++...+...+++       ++++++.||.++|.....++...
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~-------~~~~ak~Vin~AGl~Ad~la~~~  218 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE-------ETLEAKFVINAAGLYADPLAQMA  218 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCc-------EEEEeeEEEECCchhHHHHHHHh
Confidence            4456677777778899999999999999877653344555542       12899999999998777766544

>PRK07588 hypothetical protein; Provisional

Probab=94.82  E-value=0.22  Score=45.65  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++++++++++++++...+ .+.+.+.++        +.+++|+||.+-|.
T Consensus       115 ~~v~i~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~~d~vIgADG~  156 (391)
T PRK07588        115 GQVETIFDDSIATIDEHRD-GVRVTFERG--------TPRDFDLVIGADGL  156 (391)
T ss_pred             cCeEEEeCCEEeEEEECCC-eEEEEECCC--------CEEEeCEEEECCCC
Confidence            4799999999999986543 366777665        45689999999996

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.82  E-value=0.14  Score=46.00  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..++++.++.|++++..+++.+.+.+.+..++..   ..+++|.||.++|.
T Consensus       292 ~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~D~VilATGy  339 (341)
T PF13434_consen  292 GRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEE---ETLEVDAVILATGY  339 (341)
T ss_dssp             --SEEETTEEEEEEEEES-SSEEEEEEETTT--E---EEEEESEEEE---E
T ss_pred             CCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCe---EEEecCEEEEcCCc
Confidence            3468999999999998775568888877443322   57899999999994

>KOG2415|consensus

Probab=94.80  E-value=0.033  Score=50.28  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=30.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC------CCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~  137 (312)
                      +..++|++|||+||+|+++|..+.+.      +.++.++|+..+
T Consensus        73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~  116 (621)
T KOG2415|consen   73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE  116 (621)
T ss_pred             hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence            45689999999999999999988543      346889997544

>PLN02576 protoporphyrinogen oxidase

Probab=94.74  E-value=0.044  Score=51.95  Aligned_cols=37  Identities=35%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~~  137 (312)
                      ...+|++|||+|.+||++|..|.+. |.+++++|....
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r   47 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR   47 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence            4467999999999999999999988 889999998643

>KOG2852|consensus

Probab=94.72  E-value=0.67  Score=40.16  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHCC------CcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHG------RKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~------~~~~~ve~~~  136 (312)
                      ..++|+|+|..|.+.|..|.+..      ..+.++|...
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~   49 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE   49 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence            57899999999999999998765      4578888654

>PRK08244 hypothetical protein; Provisional

Probab=94.69  E-value=0.24  Score=46.93  Aligned_cols=56  Identities=18%  Similarity=0.195  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +.+.+.+.+++.|+++++++++++++.+++ .+.+.+.+.++     ..++.+|.||.+.|.
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~~~g-----~~~i~a~~vVgADG~  157 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGD-GVEVVVRGPDG-----LRTLTSSYVVGADGA  157 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcCC-eEEEEEEeCCc-----cEEEEeCEEEECCCC
Confidence            445555666778999999999999876544 35566653211     136789999999996

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.56  E-value=0.036  Score=52.67  Aligned_cols=32  Identities=41%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             EEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       106 ~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +||||+|.+||.+|..|.+.|.+|+++|++..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            58999999999999999999999999998654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK02106 choline dehydrogenase; Validated

Probab=94.55  E-value=0.038  Score=53.28  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~  136 (312)
                      +.++|+||||+|.+|+.+|..|.+ .+.+|+++|...
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            456899999999999999999999 788999999763

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=94.49  E-value=0.062  Score=47.26  Aligned_cols=48  Identities=38%  Similarity=0.666  Sum_probs=39.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCC--cccccCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQG--TTWGLGGT  149 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~--~v~a~Gd~  149 (312)
                      .++|++|||+|.+|+-+|..+++.+.+++++|...+.+..  ..|..|+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGL   53 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGL   53 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccE
Confidence            5789999999999999999999999999999976655543  35666664

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.48  E-value=0.21  Score=45.59  Aligned_cols=54  Identities=9%  Similarity=0.119  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         52 MAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        52 ~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+++.| ++++ ++.+++++..++ .+.+.+.++        .++.+|.+|.+.|...
T Consensus       113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~~v~~~~g--------~~~~a~~vI~adG~~S  167 (388)
T PRK07608        113 IERALWAALRFQPNLTWF-PARAQGLEVDPD-AATLTLADG--------QVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eEEEEECCC--------CEEEeeEEEEeCCCCc
Confidence            3444556666676 8888 888888875433 355555544        4678999999999743

>PRK07233 hypothetical protein; Provisional

Probab=94.47  E-value=0.048  Score=50.50  Aligned_cols=33  Identities=36%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +++|||+|.+||.+|..|.+.|.+++++|+...
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence            479999999999999999999999999998653

>PRK07538 hypothetical protein; Provisional

Probab=94.40  E-value=0.043  Score=50.73  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=30.3

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            799999999999999999999999999998653

>PRK06184 hypothetical protein; Provisional

Probab=94.39  E-value=0.26  Score=46.82  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      +.+.+.+.+.|+++++++++++++.++++ +.+.+.+.+.     ..++.+|.||.+.|..
T Consensus       113 ~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~-----~~~i~a~~vVgADG~~  167 (502)
T PRK06184        113 RILRERLAELGHRVEFGCELVGFEQDADG-VTARVAGPAG-----EETVRARYLVGADGGR  167 (502)
T ss_pred             HHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EEEEEEeCCC-----eEEEEeCEEEECCCCc
Confidence            34556677789999999999999875444 5555532211     1468899999999963

>PRK07208 hypothetical protein; Provisional

Probab=94.31  E-value=0.059  Score=50.82  Aligned_cols=34  Identities=32%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..|++|||+|.+||.+|..|.+.|.+++++|+..
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4589999999999999999999999999999754

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.27  E-value=0.048  Score=47.82  Aligned_cols=33  Identities=36%  Similarity=0.696  Sum_probs=27.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      ||+||||+|++|..+|..|.+.+ .+|+++|...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~   34 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP   34 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence            69999999999999999999876 4899999654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=94.10  E-value=0.079  Score=46.33  Aligned_cols=33  Identities=30%  Similarity=0.593  Sum_probs=29.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|.+|||+|.+|..+|..+.+.|.+|+++|+..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~   34 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN   34 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence            699999999999999998888999999999743

>PLN02268 probable polyamine oxidase

Probab=94.07  E-value=0.063  Score=49.95  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=29.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +++|||+|.+||.+|..|.+.|.+++++|...+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r   34 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDR   34 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            689999999999999999998999999997543

>KOG2844|consensus

Probab=94.06  E-value=1.6  Score=42.18  Aligned_cols=46  Identities=30%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcE-EEEeccCCCCCCcccccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLG  147 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~G  147 (312)
                      ..+|+||||+|-.|..++..+++.+.+. .+.+....++...-..+|
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtag   84 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAG   84 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccccccc
Confidence            3589999999999999999999998875 444544444444333344

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.04  E-value=0.45  Score=43.86  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=36.0

Q ss_pred             HHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         55 LICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        55 ~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .+.+.+.+ .+|++++++++++++.++++ +.+.+.+++.     ..++++|+||.+-|...
T Consensus       126 ~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~-----~~~i~adlvIgADG~~S  181 (415)
T PRK07364        126 ALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGK-----QQTLQSKLVVAADGARS  181 (415)
T ss_pred             HHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCc-----ceEEeeeEEEEeCCCCc
Confidence            33444444 37999999999998764433 5566653211     13589999999999633

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.01  E-value=3.4  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      ++|+|+||+|.++..++..|.+..  .++.++|+..
T Consensus         3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~   38 (488)
T PF06039_consen    3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLD   38 (488)
T ss_pred             ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            689999999998888888887654  4689999754

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=93.91  E-value=0.065  Score=49.96  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             cEEEEecCcchHHHHHHHHHCC--CcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~  137 (312)
                      +++|||+|.+||.+|..|.+.|  .+++++|...+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~   36 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR   36 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence            5899999999999999999876  78999997543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=93.89  E-value=0.067  Score=50.16  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHC----CCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~  136 (312)
                      .|++|||+|.+||.+|..|.+.    +.+++++|...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~   39 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD   39 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence            4899999999999999999988    88999999754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK05868 hypothetical protein; Validated

Probab=93.88  E-value=0.39  Score=43.72  Aligned_cols=43  Identities=14%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         62 EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..|++++++++++.++.+ ++.+.+.+.++        .++++|+||-+-|.
T Consensus       116 ~~~v~i~~~~~v~~i~~~-~~~v~v~~~dg--------~~~~adlvIgADG~  158 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDD-GDSVRVTFERA--------AAREFDLVIGADGL  158 (372)
T ss_pred             cCCcEEEeCCEEEEEEec-CCeEEEEECCC--------CeEEeCEEEECCCC
Confidence            358899999999988754 34467777766        46789999999995

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=93.81  E-value=0.067  Score=49.84  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|+||+|+|.+++.+|..|.+.|.+|+++|++.
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~   37 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP   37 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEEecCCC
Confidence            5899999999999999999999999999999764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=93.70  E-value=0.5  Score=43.30  Aligned_cols=55  Identities=22%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++.+.+.+.+.+.+ |+++.++.++.++.+++. +.+++. +|        +++++|++|-+=|.
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~dG--------~~~~a~llVgADG~  160 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSFDG--------ETLDADLLVGADGA  160 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcCCC--------cEEecCEEEECCCC
Confidence            677788888887765 999999999999876544 567777 55        57899999999884

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=93.66  E-value=0.081  Score=46.44  Aligned_cols=35  Identities=20%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+|.+|+.++..+.+.|.++.+++..+.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            68999999999999999999999999888876543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.51  E-value=0.087  Score=38.45  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +..+++|+|||||..|..-+..|...+.+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~v   35 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTV   35 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            34677899999999999777777776678876

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=93.47  E-value=0.099  Score=48.15  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .|++|||+|++|+.+|..+.+.|.++.++|...
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            489999999999999999999999999999644

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.45  E-value=0.077  Score=35.49  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             EEcCchhhHHHHHHhhcCceeeee
Q psy11185        288 VVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       288 VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |||+|.+|+-+|..|...+.+|+|
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v   24 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTV   24 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEE
Confidence            899999999999999988888876

...

>PLN02697 lycopene epsilon cyclase

Probab=93.40  E-value=0.61  Score=44.56  Aligned_cols=86  Identities=17%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCcc------------------------------------------c-hHHHHHHH
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLRG------------------------------------------F-DQQMAKLI   56 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~------------------------------------------~-~~~~~~~~   56 (312)
                      .|+.+|..|++.|.+|.|+|+. .....                                          . ...+.+.+
T Consensus       119 AGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~L  198 (529)
T PLN02697        119 AGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEEL  198 (529)
T ss_pred             HHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHH
Confidence            6788889999999999999963 22100                                          0 12233555


Q ss_pred             HHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         57 CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        57 ~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .+.+.+.|+++ ++++++.++..+++...+...++        .++.+++||.+.|...
T Consensus       199 l~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG--------~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        199 LRRCVESGVSY-LSSKVDRITEASDGLRLVACEDG--------RVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence            56666779998 67888888764444222333333        4689999999999744

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=93.38  E-value=0.096  Score=44.78  Aligned_cols=32  Identities=34%  Similarity=0.502  Sum_probs=29.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|.+|+.+|..|...|..++++|+..
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            58999999999999999999999999999854

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.37  E-value=0.26  Score=44.00  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA  117 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~  117 (312)
                      ...+.+.+.+.+++.|++++.+++|+++..+++. +. |.+.++        . +.+|.||+++|+....
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~gv~~~~g--------~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGR-VTGVRTSDG--------E-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTE-EEEEEETTE--------E-EEECEEEE--GGGHHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhcccc-ccccccccc--------c-cccceeEeccccccee
Confidence            5778888888899999999999999999875444 43 666554        3 8999999999974433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=93.32  E-value=0.4  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS   42 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~   42 (312)
                      .|+|+|..++++|.+|.|+++.
T Consensus        15 AG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192         15 AGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             HHHHHHHHHHHcCCcEEEEecc
Confidence            5899999999999999999984

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=93.14  E-value=1.1  Score=41.61  Aligned_cols=52  Identities=13%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .+.+..++.|++++.++++++++..+ +.+.....++        .++.+|+||.+.|...
T Consensus       113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g--------~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        113 WLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADG--------DVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCC--------cEEECCEEEEEeCCCH
Confidence            34555666899999999999987543 3232222222        4679999999999754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=93.10  E-value=4.8  Score=37.25  Aligned_cols=46  Identities=15%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             HHHHHhcCCceEEece-eEEee---CCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185        209 TRVMLRDKKVDYLNAL-GKFID---QHSVEATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       209 ~~~~~~~~gV~~~~~~-~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                      +.+.+...|+++...+ +..+.   .+...+.+.+|  .++.+|.||+|.|.
T Consensus       179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--~~i~~~~vvlA~Gr  228 (486)
T COG2509         179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--EEIEADYVVLAPGR  228 (486)
T ss_pred             HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--cEEecCEEEEccCc
Confidence            5567788899986554 44433   23466777888  89999999999993

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=92.98  E-value=1.4  Score=42.55  Aligned_cols=139  Identities=13%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             HHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        122 AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       122 ~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      |.+.|.+|+++++.........++.|+......                     +.+.............+.+...+|..
T Consensus         1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~   80 (565)
T TIGR01816         1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP   80 (565)
T ss_pred             CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc


Q ss_pred             cCCccccccCHHHHHHHHHH----------------HHHHhhHHHHHHHhcCCceEEece---eEEeeCCeEE----EEe
Q psy11185        181 IPNVKSVQHNWANLREAVQN----------------HVKSVNWVTRVMLRDKKVDYLNAL---GKFIDQHSVE----ATM  237 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~gV~~~~~~---~~~~~~~~~~----v~~  237 (312)
                      +.......+....+......                .-..+...+...+.+.+|+++..+   ....+..++.    +..
T Consensus        81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~  160 (565)
T TIGR01816        81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCL  160 (565)
T ss_pred             cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc


Q ss_pred             cCCCeEEEEcCeEEEccCCCCCC
Q psy11185        238 KNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       238 ~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .+|+...+.|+.||||||+....
T Consensus       161 ~~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       161 ETGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             CCCcEEEEEeCeEEECCCCcccc

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=92.90  E-value=0.85  Score=41.62  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=56.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCc-------------------------c-------------------c-hHHHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLR-------------------------G-------------------F-DQQMA   53 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~-------------------------~-------------------~-~~~~~   53 (312)
                      ..|+-+|..|++.|.+|+|+|+. .+-.                         .                   . .+.+.
T Consensus         9 ~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~   88 (388)
T TIGR01790         9 PAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLH   88 (388)
T ss_pred             HHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCceeEEcHHHHH
Confidence            35788888888889999999963 2110                         0                   0 13344


Q ss_pred             HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+.|++++ ..++..++..+++...+.+.++        ..+.++.||.+.|...
T Consensus        89 ~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g--------~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        89 EELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGG--------QRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence            555566667788885 5567777654333344555443        4688999999999754

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06753 hypothetical protein; Provisional

Probab=92.85  E-value=0.7  Score=41.90  Aligned_cols=42  Identities=10%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         64 GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        64 gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..++++++++++++.+ ++.+.+.+.++        ..+.+|+||-+-|..
T Consensus       110 ~~~i~~~~~v~~i~~~-~~~v~v~~~~g--------~~~~~~~vigadG~~  151 (373)
T PRK06753        110 EDAIFTGKEVTKIENE-TDKVTIHFADG--------ESEAFDLCIGADGIH  151 (373)
T ss_pred             CceEEECCEEEEEEec-CCcEEEEECCC--------CEEecCEEEECCCcc
Confidence            3568889999998764 34366666555        467899999999953

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=92.77  E-value=0.15  Score=49.35  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             hhhhhHhhhccCCeEEEEEc-cCCCccch--------------HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEE
Q psy11185         22 GLECAGFLNGLGFNATVMIR-SVPLRGFD--------------QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKV   86 (312)
Q Consensus        22 g~E~A~~l~~~g~~vtl~~~-~~~l~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v   86 (312)
                      +.+++.++...+.++.+..+ +++|+.++              ..+.+.+.+.+++.|+++++++.++++..+++....|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV  253 (581)
T PRK06134        174 GADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGA  253 (581)
T ss_pred             HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEE
Confidence            36788888888877776665 34444433              3456777888888999999999999987643222234


Q ss_pred             EEeeccccccCCCccccc-cEEEEecCc
Q psy11185         87 QYKNVAEVRQDNTHKYDY-DLLVLGGGS  113 (312)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-d~vivg~G~  113 (312)
                      .......     ...+.+ +.||+++|.
T Consensus       254 ~~~~~~~-----~~~i~a~k~VVlAtGg  276 (581)
T PRK06134        254 VVETPGG-----LQEIRARKGVVLAAGG  276 (581)
T ss_pred             EEEECCc-----EEEEEeCCEEEEcCCC
Confidence            4443211     024677 889999985

>TIGR02462 pyranose_ox pyranose oxidase

Probab=92.74  E-value=0.15  Score=48.64  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSP  139 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~  139 (312)
                      +|++|||+|++|+.+|..+.+.+.+++++|......
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            599999999999999999999999999999876544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.71  E-value=0.14  Score=47.47  Aligned_cols=33  Identities=42%  Similarity=0.716  Sum_probs=30.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ++|++|||+|.+|+.+|..+.+.+.+++++++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            589999999999999999999999999999865

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=92.69  E-value=0.69  Score=42.87  Aligned_cols=23  Identities=22%  Similarity=0.079  Sum_probs=21.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS   42 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~   42 (312)
                      -.|+|+|..|++.|.+|+|+|++
T Consensus        10 lAGleaA~~LAr~G~~V~LiE~r   32 (433)
T TIGR00137        10 LAGSEAAWQLAQAGVPVILYEMR   32 (433)
T ss_pred             HHHHHHHHHHHhCCCcEEEEecc
Confidence            47999999999999999999973

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=92.68  E-value=0.17  Score=47.55  Aligned_cols=31  Identities=23%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             CCCCeEEEEcCchhhHHHHHHh-hcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDS-NSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l-~~~~~~V~~  311 (312)
                      ..+++|+|||+|++|+.+|..| ...+.+|+|
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtl   68 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDI   68 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEE
Confidence            3577899999999999888864 455667775

>PLN02568 polyamine oxidase

Probab=92.64  E-value=0.16  Score=48.58  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-----CcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-----RKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-----~~~~~ve~~~~  137 (312)
                      ..|++|||+|.+|+.+|..|.+.+     .+++++|....
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            468999999999999999999776     67999997543

>PRK07045 putative monooxygenase; Reviewed

Probab=92.58  E-value=1.2  Score=40.75  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhc-cceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         52 MAKLICEEMAE-GGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        52 ~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+.+ .|++++++++++.++...++. +.+.+.++        +++.+|+||.+-|...
T Consensus       108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~~~~vIgADG~~S  165 (388)
T PRK07045        108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG--------ERVAPTVLVGADGARS  165 (388)
T ss_pred             HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC--------CEEECCEEEECCCCCh
Confidence            44444555543 579999999999998765552 34666544        4678999999999643

>PRK06475 salicylate hydroxylase; Provisional

Probab=92.54  E-value=1.1  Score=41.11  Aligned_cols=54  Identities=7%  Similarity=0.063  Sum_probs=35.6

Q ss_pred             HHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         54 KLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        54 ~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +.+.+.+.+ .+|++++++++++++... +.+.+++.++..     .+.+++|+||-+-|.
T Consensus       111 ~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~v~~~~~~~-----~~~~~adlvIgADG~  165 (400)
T PRK06475        111 SALLDACRNNPGIEIKLGAEMTSQRQTG-NSITATIIRTNS-----VETVSAAYLIACDGV  165 (400)
T ss_pred             HHHHHHHHhcCCcEEEECCEEEEEecCC-CceEEEEEeCCC-----CcEEecCEEEECCCc
Confidence            334444444 479999999999987643 335666643321     145789999998885

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.36  E-value=0.15  Score=51.65  Aligned_cols=31  Identities=26%  Similarity=0.132  Sum_probs=27.9

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..+++|+|||+|+.|+.+|..|...+.+|++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv  411 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTA  411 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            3577899999999999999999988888886

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.35  E-value=2.7  Score=39.34  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             hhhhhhHhhhccCCe-EEEEEcc-CCC----------------------cc--c--------hHHHHHHHHHHHhccceE
Q psy11185         21 SGLECAGFLNGLGFN-ATVMIRS-VPL----------------------RG--F--------DQQMAKLICEEMAEGGVH   66 (312)
Q Consensus        21 ig~E~A~~l~~~g~~-vtl~~~~-~~l----------------------~~--~--------~~~~~~~~~~~l~~~gi~   66 (312)
                      .||-+|..|.+.|.. +.|+|+. ++-                      +.  +        -.++.+++...+++.++.
T Consensus        19 sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~   98 (443)
T COG2072          19 SGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLR   98 (443)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCce
Confidence            688999999999999 9999984 332                      10  1        022677777777765543


Q ss_pred             --EEeeceeeEEEEcCCC-eeEEEEeeccccc-----------------cCC--------------------CccccccE
Q psy11185         67 --FLHKCLPLSVTKLADG-KLKVQYKNVAEVR-----------------QDN--------------------THKYDYDL  106 (312)
Q Consensus        67 --~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~-----------------~~~--------------------~~~~~~d~  106 (312)
                        +..++.+..+.-+.++ .-.|+..++...+                 .|.                    ......++
T Consensus        99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV  178 (443)
T COG2072          99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRV  178 (443)
T ss_pred             eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeE
Confidence              3334555554433332 2345554443221                 000                    01112468


Q ss_pred             EEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185        107 LVLGGGSGGLAAAKEAAAHGRKVIVLDY  134 (312)
Q Consensus       107 vivg~G~~gl~~a~~~~~~~~~~~~ve~  134 (312)
                      +|||+|.++..++..+.+.+.++.+.-.
T Consensus       179 ~VIG~GaSA~di~~~l~~~ga~vt~~qR  206 (443)
T COG2072         179 LVIGAGASAVDIAPELAEVGASVTLSQR  206 (443)
T ss_pred             EEECCCccHHHHHHHHHhcCCeeEEEec
Confidence            9999999999999999988877766654

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.31  E-value=0.64  Score=44.00  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKE  121 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~  121 (312)
                      ..+...+.+.+++.|++++++++|++++...++.+.+.+.+...+.   ...+.+|.||+++|.....++..
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~---~~~i~A~~VV~AAG~~s~~La~~  246 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGG---KRTLNTRFVFVGAGGGALPLLQK  246 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCc---eEEEECCEEEECCCcchHHHHHH
Confidence            6677777788888999999999999998654443445443211110   02578999999999755555443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.20  E-value=0.53  Score=44.46  Aligned_cols=30  Identities=37%  Similarity=0.493  Sum_probs=27.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDY  134 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~  134 (312)
                      .++|+|+|.+|+++|..+.+.|..+.++|.
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~   47 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDD   47 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            689999999999999999999988888774

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=92.20  E-value=0.17  Score=46.83  Aligned_cols=33  Identities=33%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+++|||+|.+|+.+|..+.+.|.++.++|...
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            378999999999999999999999999999644

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=92.18  E-value=0.19  Score=46.08  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..+|+||+|+|.+||.+|..+.+.|.+++++|...+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r   41 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR   41 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence            468999999999999999999999999999997554

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=92.13  E-value=0.16  Score=49.69  Aligned_cols=33  Identities=36%  Similarity=0.590  Sum_probs=31.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ++|+||||+|..|.++|..+...|.+++++|+.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            589999999999999999999999999999975

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.10  E-value=0.91  Score=41.22  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc--c---hH-HHHHHHHHCCCcEEEEecc
Q psy11185         62 EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS--G---GL-AAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~--~---gl-~~a~~~~~~~~~~~~ve~~  135 (312)
                      +..|.++.++.+++++..+++.+.+.+....+++.   +++++|+||.++|.  .   -+ .++..+.-.+..-..|+..
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~---~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~d  366 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGEL---ETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRD  366 (436)
T ss_pred             CCCeeeccccceeeeecCCCceEEEEEeeccCCCc---eEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCc
Confidence            35789999999999998877767777765433322   67899999999994  1   11 1122232223333555543


Q ss_pred             CC-----CCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        136 IP-----SPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       136 ~~-----~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..     .....||+.|......|...+.+...+.+.+..+..
T Consensus       367 Y~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~  409 (436)
T COG3486         367 YRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNS  409 (436)
T ss_pred             eeeecCCCCcceEEEecccccccccCCccchHHHHHHHHHHHH
Confidence            22     222467887765444443333444455555555544

>PLN02676 polyamine oxidase

Probab=92.05  E-value=0.21  Score=47.32  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      ...+|++|||+|.+|+.+|..+.+.+. +++++|...
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~   60 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD   60 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            346799999999999999999999887 599999754

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.01  E-value=0.16  Score=48.08  Aligned_cols=33  Identities=9%  Similarity=0.156  Sum_probs=29.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      +|++|||+|..|+++|..|.+.  +.+++++|+..
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            5999999999999999999886  78899999853

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.00  E-value=0.17  Score=48.02  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      ..+|++|||+|..|+++|..|.+.  +.+++++|+..
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            468999999999999999999874  66899999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=91.83  E-value=0.9  Score=41.65  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCcc
Q psy11185         54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      +.+.+...+.|+++++++++++++...++...|.+. +++.      .++.+|+||-+-|..
T Consensus       107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~------~~i~ad~vVgADG~~  162 (392)
T PRK08243        107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEE------HRLDCDFIAGCDGFH  162 (392)
T ss_pred             HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeE------EEEEeCEEEECCCCC
Confidence            344444566799999999999887522333556663 3321      367899998888863

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=91.82  E-value=1.1  Score=42.92  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=36.8

Q ss_pred             HHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         55 LICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        55 ~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+ .|+++++++++++++.++++ +.+.+.+.++ +   ..++.+|.||-+-|.
T Consensus       118 ~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G-~---~~~i~ad~vVgADG~  172 (538)
T PRK06183        118 VLRAGLARFPHVRVRFGHEVTALTQDDDG-VTVTLTDADG-Q---RETVRARYVVGCDGA  172 (538)
T ss_pred             HHHHHHHhCCCcEEEcCCEEEEEEEcCCe-EEEEEEcCCC-C---EEEEEEEEEEecCCC
Confidence            34444444 48999999999999876544 6666653211 0   146789999999995

>TIGR00136 gidA glucose-inhibited division protein A

Probab=91.81  E-value=2.2  Score=41.32  Aligned_cols=85  Identities=12%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC------------------ccc--------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL------------------RGF--------------------------------   48 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l------------------~~~--------------------------------   48 (312)
                      ..|+++|..+++.|.+|.|+++. ..+                  +.+                                
T Consensus        10 ~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~skgpAV~~~   89 (617)
T TIGR00136        10 HAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSSKGPAVRAT   89 (617)
T ss_pred             HHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccCCCCccccc
Confidence            36899999999999999999973 211                  011                                


Q ss_pred             ----hH-HHHHHHHHHHhcc-ceEEEeeceeeEEEEc-CCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 ----DQ-QMAKLICEEMAEG-GVHFLHKCLPLSVTKL-ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ----~~-~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                          |+ .+...+.+.+++. ++.++.+ .+..+... ++....|.+.++        ..+.++.||+++|.
T Consensus        90 RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILATGt  152 (617)
T TIGR00136        90 RAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIITTGT  152 (617)
T ss_pred             HHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCC--------CEEECCEEEEccCc
Confidence                10 1123444556665 7888755 45555433 233345665554        46889999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG0685|consensus

Probab=91.79  E-value=0.23  Score=45.74  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=28.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      .+.+||||+|.+|+++|..|.+.+. ++.++|...
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d   55 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD   55 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence            4579999999999999999997666 578888654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=91.65  E-value=0.13  Score=47.83  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=19.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCcc--------------------------------------------------ch
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRG--------------------------------------------------FD   49 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~--------------------------------------------------~~   49 (312)
                      ..|+-+|..+++.|.+|.|+|+...|.+                                                  ++
T Consensus         9 ~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (428)
T PF12831_consen    9 PAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGWVSNVPFD   88 (428)
T ss_dssp             HHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST---------------------
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccccccccccc
Confidence            4688999999999999999998533300                                                  11


Q ss_pred             HHHH-HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185         50 QQMA-KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        50 ~~~~-~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                      ++.. ..+.+.+++.||++++++.+..+..+++....|.+.+...     ..++.++++|=++|-+-+
T Consensus        89 ~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-----~~~i~A~~~IDaTG~g~l  151 (428)
T PF12831_consen   89 PEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-----RKEIRAKVFIDATGDGDL  151 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccc
Confidence            1211 2244556678999999999999887543333555544221     167899999999996433

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=91.65  E-value=0.69  Score=44.30  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             hhhhhhhhhHhhhccCCeEEEEEc-cCCC---ccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-CC--Cee-EEEEe
Q psy11185         18 KVDSGLECAGFLNGLGFNATVMIR-SVPL---RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-AD--GKL-KVQYK   89 (312)
Q Consensus        18 ~~~ig~E~A~~l~~~g~~vtl~~~-~~~l---~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~--~~~-~v~~~   89 (312)
                      ..-+++|+..+|.++=+++.=+.. +.+.   ...-..+..-+.+.|+++||+|+++++|+.+..+ .+  +.+ .+.+.
T Consensus       190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~  269 (576)
T PRK13977        190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT  269 (576)
T ss_pred             hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence            456899999999887554332322 1111   1123677788889999999999999999998864 22  222 44444


Q ss_pred             e-ccccccCCCccccccEEEEecCc
Q psy11185         90 N-VAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        90 ~-~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      . +...   .....+.|.||++.|-
T Consensus       270 ~~~~~~---~I~l~~~DlVivTnGs  291 (576)
T PRK13977        270 RNGKEE---TIDLTEDDLVFVTNGS  291 (576)
T ss_pred             eCCcee---EEEecCCCEEEEeCCc
Confidence            2 2211   1134578999999994

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=91.59  E-value=0.66  Score=46.44  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+++|||+|++|+.+|..|.+.|.+++++|...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~  271 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA  271 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            45789999999999999999999999999999754

>TIGR02730 carot_isom carotene isomerase

Probab=91.48  E-value=0.55  Score=44.56  Aligned_cols=57  Identities=11%  Similarity=0.047  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.|++|++++.|+++...++....|.+.++        +++++|.||+++|+
T Consensus       228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g--------~~~~ad~vV~a~~~  284 (493)
T TIGR02730       228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADG--------EKIYAKRIVSNATR  284 (493)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCC--------CEEEcCEEEECCCh
Confidence            3677888889999999999999999998765443345666554        46789999999996

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=91.26  E-value=0.26  Score=46.17  Aligned_cols=32  Identities=34%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|++|+.+|..|.+.|.+++++|...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~   32 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD   32 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            47999999999999999999999999999754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=91.22  E-value=0.54  Score=41.82  Aligned_cols=58  Identities=12%  Similarity=0.144  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ...+...+.+.+.+.|++++.++.|+.++..++....|...+         ..+.+|.||+++|+..
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~---------g~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPS---------GDVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCC---------CEEECCEEEEcCChhh
Confidence            467778888888999999999999999986433212233222         3678999999999643

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=90.93  E-value=0.68  Score=42.37  Aligned_cols=57  Identities=11%  Similarity=0.256  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+.+.+.+.+++.|++++.++++++++.++++ +.+.+.++        .++.+|.||.+.|...
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDG--------RRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCC--------CEEEeCEEEEecCCCc
Confidence            345566677788889999999999999865443 55665544        4678999999999754

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=90.88  E-value=1.1  Score=42.58  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhc----cc--eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185         50 QQMAKLICEEMAE----GG--VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK  120 (312)
Q Consensus        50 ~~~~~~~~~~l~~----~g--i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~  120 (312)
                      ..+.+.+.+.+++    .|  ++++++++|+.++..+++...|...+         .++.+|.||+++|.-...++.
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~---------G~i~A~~VVvaAG~~S~~La~  278 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR---------GEIRARFVVVSACGYSLLFAQ  278 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC---------CEEEeCEEEECcChhHHHHHH
Confidence            3566777778887    77  89999999999987544434454432         358999999999975555443

>PLN02529 lysine-specific histone demethylase 1

Probab=90.68  E-value=0.32  Score=48.23  Aligned_cols=35  Identities=34%  Similarity=0.516  Sum_probs=31.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+++|||+|++|+.+|..+.+.|.+++++|...
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            45689999999999999999999999999999754

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=90.63  E-value=0.28  Score=46.05  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             cEEEEecCcchHHHHHHHHHC------CCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~  137 (312)
                      +++|||+|.+||.+|..|.+.      +.+++++|...+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            589999999999999999875      357999997643

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=90.62  E-value=2  Score=41.31  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=35.9

Q ss_pred             HHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         55 LICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        55 ~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+.+.+.+. ++++++++++++++.+.++ +.+.+.+.+.     ..++.+|.||.+-|..
T Consensus       130 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~v~~~~~~g-----~~~i~ad~vVgADG~~  184 (547)
T PRK08132        130 YLVERAQALPNIDLRWKNKVTGLEQHDDG-VTLTVETPDG-----PYTLEADWVIACDGAR  184 (547)
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EEEEEECCCC-----cEEEEeCEEEECCCCC
Confidence            344445543 7999999999999865443 4555543211     1357899999999953

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=90.58  E-value=2.4  Score=38.98  Aligned_cols=91  Identities=20%  Similarity=0.245  Sum_probs=61.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCC------------------ccc--------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPL------------------RGF--------------------------------   48 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l------------------~~~--------------------------------   48 (312)
                      +.|.-+|..|++.|.+|.|+|+ +..-                  +.+                                
T Consensus        13 PAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~y~v   92 (396)
T COG0644          13 PAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIV   92 (396)
T ss_pred             hHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEecCCCceEEE
Confidence            3678888999999999999997 3221                  000                                


Q ss_pred             -hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         49 -DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        49 -~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                       -..+-+++.++-.+.|.+++.++.+..+..+.++. .+....++       .++.+++||.+.|+.+.-.
T Consensus        93 ~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~-~~~~~~~~-------~e~~a~~vI~AdG~~s~l~  155 (396)
T COG0644          93 DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGV-VVGVRAGD-------DEVRAKVVIDADGVNSALA  155 (396)
T ss_pred             EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcE-EEEEEcCC-------EEEEcCEEEECCCcchHHH
Confidence             02233445666677899999999999988765552 33332221       4788999999999766443

>KOG1399|consensus

Probab=90.46  E-value=1.6  Score=40.82  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC-----c--------c-----------------------------ch-HHHHHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL-----R--------G-----------------------------FD-QQMAKL   55 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l-----~--------~-----------------------------~~-~~~~~~   55 (312)
                      .+|+-+|..|.+.|++|+++||+ ++-     +        .                             .+ .++.+|
T Consensus        16 ~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~Y   95 (448)
T KOG1399|consen   16 PAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEY   95 (448)
T ss_pred             hHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHH
Confidence            47889999999999999999994 432     1        0                             11 378888


Q ss_pred             HHHHHhccce--EEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         56 ICEEMAEGGV--HFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        56 ~~~~l~~~gi--~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ++...+.-++  .+.+++.+..++...++.-+|...+..+.    ....-+|.|+|+.|-
T Consensus        96 L~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~----~~~~ifd~VvVctGh  151 (448)
T KOG1399|consen   96 LRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ----IEEEIFDAVVVCTGH  151 (448)
T ss_pred             HHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc----eeEEEeeEEEEcccC
Confidence            8887777665  56777877877765434456777655321    135578999999994

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=90.19  E-value=0.34  Score=44.84  Aligned_cols=36  Identities=36%  Similarity=0.512  Sum_probs=31.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+.-+++|||+|.+|+.+|..|.+.|.+++++|++.
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            345679999999999999999999999999999764

>PLN02661 Putative thiazole synthesis

Probab=90.18  E-value=2.9  Score=37.67  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             hhhhhhHhhhcc-CCeEEEEEccCCCcc---------------------------------------chHHHHHHHHH-H
Q psy11185         21 SGLECAGFLNGL-GFNATVMIRSVPLRG---------------------------------------FDQQMAKLICE-E   59 (312)
Q Consensus        21 ig~E~A~~l~~~-g~~vtl~~~~~~l~~---------------------------------------~~~~~~~~~~~-~   59 (312)
                      .|+-+|..|++. |.+|+|+|+.....+                                       +..++...+.+ .
T Consensus       103 AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~e~~stLi~ka  182 (357)
T PLN02661        103 AGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMSKL  182 (357)
T ss_pred             HHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchHHHHHHHHHHH
Confidence            578888889875 899999998421100                                       01122223443 4


Q ss_pred             HhccceEEEeeceeeEEEEcCCCeeEEEE------eeccccccCCCccccccEEEEecCcchH
Q psy11185         60 MAEGGVHFLHKCLPLSVTKLADGKLKVQY------KNVAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        60 l~~~gi~~~~~~~v~~~~~~~~~~~~v~~------~~~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                      +++.||+++.++.+..+..+++....+.+      .++....-.....+.++.||+++|..|.
T Consensus       183 ~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        183 LARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             HhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence            44578999999999888764332223332      1211100000135789999999996553

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=90.14  E-value=0.34  Score=46.51  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...++|+||||+|.+|..+|..|.+.+.+|+++|...
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            3457999999999999999999998888999999763

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=90.00  E-value=0.4  Score=45.24  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~   32 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS   32 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47999999999999999999999999999764

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02785 Protein HOTHEAD

Probab=89.98  E-value=0.33  Score=47.01  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+|+||||+|.+|+.+|..|.+ +.+|+++|...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            446999999999999999999998 57899999764

>PRK07538 hypothetical protein; Provisional

Probab=89.78  E-value=2.9  Score=38.62  Aligned_cols=57  Identities=18%  Similarity=0.025  Sum_probs=35.2

Q ss_pred             HHHHHHHhc-cc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         54 KLICEEMAE-GG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        54 ~~~~~~l~~-~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      +.+.+.+.+ .| +.+++++++++++...++ +.+.+.++..+.   ..++.+|+||-+-|..
T Consensus       106 ~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~---~~~~~adlvIgADG~~  164 (413)
T PRK07538        106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGD---LVSVRGDVLIGADGIH  164 (413)
T ss_pred             HHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCc---cceEEeeEEEECCCCC
Confidence            334444433 35 569999999998865554 444554432111   1468899999999963

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.76  E-value=0.92  Score=41.58  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+.+.+.+.+.+.|++++.++++++++.+++ .+.+.+.++        ..+.+|+||.+.|...
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDE-GVTVTLSDG--------SVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EEEEEECCC--------CEEEeCEEEEcCCCCh
Confidence            45566777777888999999999999876443 355666554        4678999999999643

>TIGR01810 betA choline dehydrogenase

Probab=89.59  E-value=0.33  Score=46.51  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=28.9

Q ss_pred             cEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      |+||||+|.+|+.+|..|.+.+ .+|+++|...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999887 4899999764

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=89.42  E-value=1.8  Score=41.13  Aligned_cols=67  Identities=13%  Similarity=0.259  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185         51 QMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK  120 (312)
Q Consensus        51 ~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~  120 (312)
                      .+.+.+.+.+++.| ++++++++|++++...++.+.+.+.+..++.   ...+.++.||+++|.....++.
T Consensus       184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~---~~~i~A~~VVvaAGg~s~~L~~  251 (494)
T PRK05257        184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGE---KRTVRAKFVFIGAGGGALPLLQ  251 (494)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCc---eEEEEcCEEEECCCcchHHHHH
Confidence            56677777788876 9999999999998755543445543311110   0257899999999975555443

>TIGR02734 crtI_fam phytoene desaturase

Probab=89.25  E-value=1  Score=42.77  Aligned_cols=56  Identities=9%  Similarity=0.074  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..+.+.+.+.+++.|++|++++.|.++...++....|.+.++        ..+.+|.||+++++
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g--------~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADG--------ERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCC--------CEEECCEEEECCcH
Confidence            567788888889999999999999999865433345666554        46789999998885

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=89.22  E-value=0.51  Score=44.05  Aligned_cols=32  Identities=34%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+|+|.+||++|..|.+.|.++++.|...
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            47999999999999999999999999999754

>KOG0042|consensus

Probab=89.16  E-value=0.78  Score=43.16  Aligned_cols=35  Identities=31%  Similarity=0.648  Sum_probs=29.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDY  134 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~  134 (312)
                      .+.++|++|||+|..|...|.-..-+|.++..+|.
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~   98 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEA   98 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhcccceeEEEec
Confidence            35579999999999887777777778999988885

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=88.85  E-value=3.7  Score=37.56  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +++.+...+.|++++.. .++++.... +.+.+.+.++.........++.+|+||.+.|...
T Consensus        96 ~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        96 SYLRERAQKAGAELIHG-LFLKLERDR-DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             HHHHHHHHhCCCEEEee-EEEEEEEcC-CeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            34555556679999755 577776543 3355666542100000014688999999999633

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=88.78  E-value=0.5  Score=43.54  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=29.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|++|||+|.+|+.+|..+.+.+.++.+++...
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999998888998988754

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=88.54  E-value=1.9  Score=39.77  Aligned_cols=58  Identities=17%  Similarity=0.012  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA  117 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~  117 (312)
                      .+...+.+.+++.|+++++++.|++++..++....+... +        .++.+|.||+++|.....
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~--------~~~~a~~VV~a~G~~~~~  259 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-G--------GVITADAYVVALGSYSTA  259 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-C--------cEEeCCEEEECCCcchHH
Confidence            556667777888999999999999987644331223322 2        357899999999975433

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=88.45  E-value=8.2  Score=34.36  Aligned_cols=31  Identities=32%  Similarity=0.436  Sum_probs=28.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .+-|||+|.+|..+|+++.+.|..|+..|..
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR   35 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMR   35 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence            5789999999999999999999999998854

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=88.33  E-value=1.9  Score=39.48  Aligned_cols=61  Identities=16%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      ...+.+.+.+.+++.|+++++++.+.+++..+++ +.+...+         ..+.+|.||+++|.....++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~---------g~i~ad~vV~A~G~~s~~l~  208 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQ---------GEYEARTLINCAGLMSDRLA  208 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECC---------CEEEeCEEEECCCcchHHHH
Confidence            4677788888889999999999999998764332 3444332         35789999999997443333

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=88.19  E-value=1.5  Score=40.27  Aligned_cols=54  Identities=11%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+++.|++++.++++.+++.++++ +.+.+.++        .++.+|.||.+.|.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~a~~vVgAdG~  166 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADG--------RQLRAPLVVAADGA  166 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCC
Confidence            34455666777789999999999999875544 55666554        46899999999996

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=88.06  E-value=0.62  Score=43.32  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=28.1

Q ss_pred             cEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      .++|||+|.+||++|..|.+.+  .++.++|+..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~   35 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4799999999999999999888  6789999753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=88.04  E-value=2.5  Score=40.08  Aligned_cols=69  Identities=13%  Similarity=0.271  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHh-ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHH
Q psy11185         50 QQMAKLICEEMA-EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKE  121 (312)
Q Consensus        50 ~~~~~~~~~~l~-~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~  121 (312)
                      ..+.+.+.+.+. ..|+++++++.|+.++..+++...+.+.+...+.   ..++.+|.||+++|.....++..
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~---~~~i~Ad~VV~AAGawS~~La~~  253 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGE---KREQVADYVFIGAGGGAIPLLQK  253 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCc---eEEEEcCEEEECCCcchHHHHHH
Confidence            455666666665 4599999999999987653443444432211100   02578999999999766555543

>KOG3851|consensus

Probab=87.88  E-value=1.2  Score=39.29  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             HhhhccCC--eEEEEEc-c--CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCcc
Q psy11185         27 GFLNGLGF--NATVMIR-S--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK  101 (312)
Q Consensus        27 ~~l~~~g~--~vtl~~~-~--~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (312)
                      .+++++|.  ++.++.. +  .++.  -+..++.+++..++++|++.....+.++..+. .  ..++++-+.  ++..++
T Consensus       210 ~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~-~--~AvFe~L~k--PG~t~e  282 (446)
T KOG3851|consen  210 SYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTND-R--KAVFENLDK--PGVTEE  282 (446)
T ss_pred             HHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccc-h--hhHHHhcCC--CCceeE
Confidence            56777775  5666665 3  3322  34566788888889999998888888776432 1  233333221  122367


Q ss_pred             ccccEEEEecCcchHHH-HHH-HHHCCCcEEEEec--cCCCCCCcccccCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAA-AKE-AAAHGRKVIVLDY--VIPSPQGTTWGLGGTC  150 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~-a~~-~~~~~~~~~~ve~--~~~~~~~~v~a~Gd~~  150 (312)
                      ++++++=++--.+.... +.. +++.. ..+-+|.  .+....|+||++|||.
T Consensus       283 i~yslLHv~Ppms~pe~l~~s~~adkt-GfvdVD~~TlQs~kypNVFgiGDc~  334 (446)
T KOG3851|consen  283 IEYSLLHVTPPMSTPEVLANSDLADKT-GFVDVDQSTLQSKKYPNVFGIGDCM  334 (446)
T ss_pred             EeeeeeeccCCCCChhhhhcCcccCcc-cceecChhhhccccCCCceeecccc
Confidence            88888777544332221 111 22211 2344443  2456789999999954

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=87.50  E-value=1.4  Score=40.27  Aligned_cols=56  Identities=11%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ...+...+.+.+++ |++++.++.|.+++..+ +.+.+...++        ..+.+|.||+++|..
T Consensus       134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~~~v~t~~g--------~~~~a~~vV~a~G~~  189 (381)
T TIGR03197       134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EGWQLLDANG--------EVIAASVVVLANGAQ  189 (381)
T ss_pred             hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-CeEEEEeCCC--------CEEEcCEEEEcCCcc
Confidence            35666777788888 99999999999997643 3344544433        347899999999964

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=87.34  E-value=2.1  Score=38.85  Aligned_cols=59  Identities=12%  Similarity=0.094  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                      ..+.+.+.+.+++.|++++.+++|++++.++ +.+.+...+         .++.+|.||+++|.....+
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~~v~~~~---------~~i~a~~vV~aaG~~~~~l  203 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTE-LLVTVKTTK---------GSYQANKLVVTAGAWTSKL  203 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeEEEEeCC---------CEEEeCEEEEecCcchHHH
Confidence            3556677777888999999999999998643 334444322         3578999999999643333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=87.10  E-value=2.1  Score=39.55  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      -+.+.+.+.+.+++.||+|++++.++++..+++....+.+.+...++.   ..+.++.||+++|-
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~---~~i~A~aVIlAtGG  201 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEF---VRIKAKAVILATGG  201 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEE---EEEEESEEEE----
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeE---EEEeeeEEEeccCc
Confidence            467888889999999999999999999987544334566653221111   46778899998884

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=87.10  E-value=1.8  Score=39.31  Aligned_cols=57  Identities=12%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .++.+.+.+.+.+ .|+++++++++++++.++++ +.+.+.++        .++.+|.||.+.|...
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNG--------QQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCC--------CEEEeeEEEEecCCCh
Confidence            3455666666666 49999999999999765443 55666544        4678999999999643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.03  E-value=2.6  Score=39.36  Aligned_cols=44  Identities=32%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEee
Q psy11185         21 SGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHK   70 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~   70 (312)
                      +|+++|..|++.|++|+++++..     ...+ +...+.|.+.|++++.+
T Consensus        16 ~G~~~A~~l~~~G~~V~~~d~~~-----~~~~-~~~~~~l~~~~~~~~~~   59 (450)
T PRK14106         16 SGLALAKFLKKLGAKVILTDEKE-----EDQL-KEALEELGELGIELVLG   59 (450)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCc-----hHHH-HHHHHHHHhcCCEEEeC
Confidence            89999999999999999999832     1112 22234466667776544

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=86.67  E-value=5.8  Score=37.73  Aligned_cols=21  Identities=19%  Similarity=0.252  Sum_probs=18.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEc
Q psy11185         21 SGLECAGFLNGLGFNATVMIR   41 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~   41 (312)
                      -|+|+|.+.+++|+++.|+.-
T Consensus        15 AG~EAA~AaARmG~ktlLlT~   35 (621)
T COG0445          15 AGVEAALAAARMGAKTLLLTL   35 (621)
T ss_pred             cchHHHHhhhccCCeEEEEEc
Confidence            489999999999999887764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=86.62  E-value=1.9  Score=39.33  Aligned_cols=23  Identities=22%  Similarity=0.033  Sum_probs=19.7

Q ss_pred             hhhhhhhHhhhcc--CCeEEEEEcc
Q psy11185         20 DSGLECAGFLNGL--GFNATVMIRS   42 (312)
Q Consensus        20 ~ig~E~A~~l~~~--g~~vtl~~~~   42 (312)
                      ..|+.+|..|++.  |.+|.|+|+.
T Consensus         9 ~AGl~lA~~L~~~~~g~~V~lle~~   33 (370)
T TIGR01789         9 LAGGLIALRLQRARPDFRIRVIEAG   33 (370)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3588999999887  9999999984

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=86.49  E-value=0.9  Score=43.57  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHC----CCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~~  137 (312)
                      ..+++|||+|.+||++|..|.+.    |.++.++|+...
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~   60 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV   60 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence            35889999999999999999885    568999998653

>PLN02612 phytoene desaturase

Probab=86.47  E-value=0.84  Score=44.15  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ...+++|||+|.+|+.+|..+.+.+.+++++|..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~  125 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR  125 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence            3568999999999999999999999999999974

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.41  E-value=5.5  Score=32.96  Aligned_cols=89  Identities=17%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             chhhhhhh---hhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccce-EEEeeceeeEEEEcCCCeeEEEEeecc
Q psy11185         17 DKVDSGLE---CAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGV-HFLHKCLPLSVTKLADGKLKVQYKNVA   92 (312)
Q Consensus        17 ~~~~ig~E---~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi-~~~~~~~v~~~~~~~~~~~~v~~~~~~   92 (312)
                      ++-+||.-   .|..|+++..+|+-+||       ++++.+.+.+.|+..|+ ++      .           +...||.
T Consensus        75 ~VLEIGtGsGY~aAvla~l~~~V~siEr-------~~~L~~~A~~~L~~lg~~nV------~-----------v~~gDG~  130 (209)
T COG2518          75 RVLEIGTGSGYQAAVLARLVGRVVSIER-------IEELAEQARRNLETLGYENV------T-----------VRHGDGS  130 (209)
T ss_pred             eEEEECCCchHHHHHHHHHhCeEEEEEE-------cHHHHHHHHHHHHHcCCCce------E-----------EEECCcc
Confidence            34455553   56788899889999997       56667777888888775 22      1           1222222


Q ss_pred             ccccCCCccccccEEEEecCcc--hHHHHHHHHHCCCcEEEE
Q psy11185         93 EVRQDNTHKYDYDLLVLGGGSG--GLAAAKEAAAHGRKVIVL  132 (312)
Q Consensus        93 ~~~~~~~~~~~~d~vivg~G~~--gl~~a~~~~~~~~~~~~v  132 (312)
                      .+   ....-+||.|+|.++..  .-.+..+|..-|.-++.+
T Consensus       131 ~G---~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         131 KG---WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             cC---CCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEE
Confidence            21   11345899999999953  345555565433323433

>PLN03000 amine oxidase

Probab=85.95  E-value=1  Score=45.36  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+++|||+|++|+.+|..+.+.+.+++++|...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~  217 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK  217 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            4789999999999999999999999999999754

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=85.09  E-value=2.8  Score=38.15  Aligned_cols=45  Identities=13%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             HHHhcCCceEEece-eEEe--eCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        211 VMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       211 ~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ..+.. |+++...+ +..+  +...+.+++.+|  ..+.+|.||+|+|.+.
T Consensus       143 ~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g--~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       143 AHAGI-RLTLHFNTEITSLERDGEGWQLLDANG--EVIAASVVVLANGAQA  190 (381)
T ss_pred             hccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCC--CEEEcCEEEEcCCccc
Confidence            44556 88876654 3333  345677888888  4689999999999653

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PLN02612 phytoene desaturase

Probab=85.04  E-value=2.5  Score=40.86  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..+.+.+.+.|++.|.+|++++.|++|+.++++. ..+.+.+|        +.+++|.||++..+
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G--------~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNG--------SVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCC--------cEEECCEEEECCCH
Confidence            4466777788888999999999999998755553 23555554        46789999998764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=85.00  E-value=4.2  Score=37.61  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      -..+.+.+.+.+++.|++++.+++|.++...++....+...++.      ...+.+|.+|+++|.-
T Consensus       262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~------~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR------DIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc------cceEECCEEEEccCCC
Confidence            45677778889999999999999999987544332223333321      0468899999999964

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=84.95  E-value=3.4  Score=39.47  Aligned_cols=67  Identities=6%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                      +..+...+.+...+.|++++.+++|++++..++....+.+.+..++.   ...+.++.||.++|+-.-.+
T Consensus       127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~---~~~i~a~~VVnAaG~wa~~l  193 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGE---EERIEAQVVINAAGIWAGRI  193 (516)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCc---EEEEEcCEEEECCCcchHHH
Confidence            34555666677888999999999999998654432345554321110   13688999999999744333

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=84.68  E-value=4  Score=37.53  Aligned_cols=65  Identities=22%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      .+...+.+.+++.|++++.+++|++++..+ +.+.+.+.++...   ....+.+|.||+++|+....++
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~v~~~~~~~~---~~~~i~a~~vV~a~G~~s~~l~  262 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVVLTVQPSAEH---PSRTLEFDGVVVCAGVGSRALA  262 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCC---ccceEecCEEEECCCcChHHHH
Confidence            445666778888999999999999997643 3244443332100   0135789999999997544443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=84.39  E-value=3  Score=37.84  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         51 QMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+.+.+.+.+.+.| ++++.++++++++... +.+.+.+.++        ..+.+|+||.+.|..
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~v~~~~g--------~~~~~~~vi~adG~~  162 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVELTLDDG--------QQLRARLLVGADGAN  162 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeEEEECCC--------CEEEeeEEEEeCCCC
Confidence            34555666677777 9999999999997644 3355666554        457899999999963

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>KOG1238|consensus

Probab=84.37  E-value=1  Score=43.20  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      ...++|.||||+|.+|..+|..|.+.. .+|+++|...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg   91 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG   91 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence            345799999999999999999998764 4789999654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=84.19  E-value=4.3  Score=39.12  Aligned_cols=66  Identities=14%  Similarity=0.083  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                      ..+...+.....+.|++++.+++|+.+...++....+.+.+..++.   ...+.+|.||.++|+-.-.+
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~---~~~i~A~~VVnAaG~wa~~l  214 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGE---TQEIHAPVVVNAAGIWGQHI  214 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCc---EEEEECCEEEECCChhHHHH
Confidence            4455555666778899999999999997654332345554321110   13678999999999744333

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=83.69  E-value=3.6  Score=37.56  Aligned_cols=55  Identities=9%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         52 MAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        52 ~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+.+. ||+++.++++++++..+++ +.+.+.++        ..+.+|+||.+.|...
T Consensus       114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADG--------EEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCC--------CEEEeCEEEEeCCCCc
Confidence            344555556665 9999999999998764433 45655544        4678999999999643

>KOG4254|consensus

Probab=83.60  E-value=1.4  Score=40.67  Aligned_cols=34  Identities=44%  Similarity=0.660  Sum_probs=31.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      -++|+|+||+|..||.++..+.+.+.++++.|..
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr   46 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR   46 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence            4799999999999999999999999999999875

>PLN02487 zeta-carotene desaturase

Probab=83.60  E-value=1.3  Score=42.81  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=30.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+++|||+|++|+.+|..+.+.|.+++++|...
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~  108 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP  108 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence            489999999999999999999999999999754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=83.48  E-value=3.3  Score=39.21  Aligned_cols=65  Identities=12%  Similarity=0.031  Sum_probs=45.3

Q ss_pred             ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         46 RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        46 ~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ++=...+.+.+.+.+++.|.+|++++.|++|...++....+.+.++..+.   ...+.+|.||.++.+
T Consensus       228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~---~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQE---DLNVKADDVVANLPP  292 (492)
T ss_pred             cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCc---eEEEECCEEEECCCH
Confidence            33456788889999999999999999999998654322244444431110   035789999988886

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK11445 putative oxidoreductase; Provisional

Probab=83.41  E-value=9.4  Score=34.36  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             ccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCcch
Q psy11185         62 EGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.||++++++.+.+++..+++ +.+.+. ++..      .++.+|.||.+.|...
T Consensus       110 ~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~------~~i~a~~vV~AdG~~S  157 (351)
T PRK11445        110 PASVEVYHNSLCRKIWREDDG-YHVIFRADGWE------QHITARYLVGADGANS  157 (351)
T ss_pred             hcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcE------EEEEeCEEEECCCCCc
Confidence            468999999999998765443 455543 3310      2578999999999744

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=83.09  E-value=4.8  Score=31.61  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             cceEEE-eeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GGVHFL-HKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~gi~~~-~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+|++. ...+|+.+...+++ ..+.+.++        ..+.+|.||++.|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~-~~v~~~~g--------~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDG-YRVVTADG--------QSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCc-EEEEECCC--------CEEEeCEEEECCCC
Confidence            466554 34678888876555 46666665        56799999999984

>KOG2403|consensus

Probab=83.06  E-value=21  Score=34.10  Aligned_cols=50  Identities=34%  Similarity=0.538  Sum_probs=43.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                      .+|.+++|+|-+|+..+..+.+.+..+.++.+..++....+++.|+..+.
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~  104 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAA  104 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhh
Confidence            48999999999999999999999988888888888888889998886433

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=83.01  E-value=9.4  Score=34.78  Aligned_cols=87  Identities=17%  Similarity=0.162  Sum_probs=59.6

Q ss_pred             hhhhhhhHhh--hccCCeEEEEEc-cCCC-c----------------------------------------c----chHH
Q psy11185         20 DSGLECAGFL--NGLGFNATVMIR-SVPL-R----------------------------------------G----FDQQ   51 (312)
Q Consensus        20 ~ig~E~A~~l--~~~g~~vtl~~~-~~~l-~----------------------------------------~----~~~~   51 (312)
                      ..|+-+|..|  ++.|.+|.|+|+ .... +                                        .    ....
T Consensus         9 pAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y~~i~~~~   88 (374)
T PF05834_consen    9 PAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPYCMIDRAD   88 (374)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccceEEEEHHH
Confidence            3577778888  778888888887 3331 0                                        0    1256


Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                      +.+++.+.+.+.+ .+.++++|.+++..++ ...+.+.+|        ..+.+++||-+-|+...
T Consensus        89 f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~-~~~v~~~~g--------~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   89 FYEFLLERAAAGG-VIRLNARVTSIEETGD-GVLVVLADG--------RTIRARVVVDARGPSSP  143 (374)
T ss_pred             HHHHHHHHhhhCC-eEEEccEEEEEEecCc-eEEEEECCC--------CEEEeeEEEECCCcccc
Confidence            6677777777445 4667899999887544 245666665        57899999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=82.97  E-value=3.4  Score=37.39  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                      ..+...+.+.+.+.|+++++++++++++...+ .+.+...+         ..+.+|.||+++|....
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~---------g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GVTVTTAD---------GTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eEEEEeCC---------CEEEeeEEEEecCcchh
Confidence            44555566677788999999999999986433 24444332         25789999999997433

>TIGR02731 phytoene_desat phytoene desaturase

Probab=82.93  E-value=4  Score=38.18  Aligned_cols=61  Identities=11%  Similarity=0.059  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..+.+.+.+.+++.|.+|++++.|++|+..+++. ..+.+.+++..+   ..++.+|.||++..+
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~---~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQR---RFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCc---eeEEECCEEEEcCCH
Confidence            4566777888888899999999999997544442 345565442100   015789999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07233 hypothetical protein; Provisional

Probab=81.82  E-value=4.4  Score=37.40  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.|+++++++.|++++..++. +.+...++        ..+++|.||++..+
T Consensus       197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~~~~--------~~~~ad~vI~a~p~  252 (434)
T PRK07233        197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVEVDG--------EEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEEeCC--------ceEECCEEEECCCH
Confidence            3567778888888889999999999999865443 33333333        46789999999885

>PRK09126 hypothetical protein; Provisional

Probab=81.72  E-value=3.8  Score=37.39  Aligned_cols=53  Identities=19%  Similarity=0.193  Sum_probs=37.7

Q ss_pred             HHHHHHH-hccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         54 KLICEEM-AEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        54 ~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+ ++.|++++.++++++++...+ .+.+.+.++        .++.+|+||.+.|...
T Consensus       114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~~v~~~~g--------~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        114 RAAYEAVSQQDGIELLTGTRVTAVRTDDD-GAQVTLANG--------RRLTARLLVAADSRFS  167 (392)
T ss_pred             HHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eEEEEEcCC--------CEEEeCEEEEeCCCCc
Confidence            3344444 346999999999999876433 356666554        4689999999999633

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=81.37  E-value=4.7  Score=37.49  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcC-CCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA-DGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~-~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.|+++++++.++++..+. ++.+ .+...++.       ..+.++.||+++|-
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~-------~~i~ak~VIlAtGG  181 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT-------HRITTQALVLAAGG  181 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc-------EEEEcCEEEEcCCC
Confidence            35677788888899999999999999987643 3433 23332211       35778999999994

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07190 hypothetical protein; Provisional

Probab=81.34  E-value=4.4  Score=38.45  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+++.|++++.+++++.++.++++ +.+.+.++        .++.++.||.+-|.
T Consensus       114 ~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g--------~~v~a~~vVgADG~  163 (487)
T PRK07190        114 LLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNG--------ERIQSRYVIGADGS  163 (487)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCC--------cEEEeCEEEECCCC
Confidence            4455677789999999999999875544 44555443        46789999999995

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=81.03  E-value=5.1  Score=36.71  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCc
Q psy11185         48 FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        48 ~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +...+.+.+.+.+++.|.+|++++.|++|+..+++ +.+.+. ++        +.+.+|.||++.-+
T Consensus       195 ~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g--------~~~~~d~vi~a~p~  252 (419)
T TIGR03467       195 LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGG--------ETLPADAVVLAVPP  252 (419)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCC--------ccccCCEEEEcCCH
Confidence            33344454677787889999999999999875543 334333 33        46789999997664

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=80.97  E-value=4.4  Score=35.86  Aligned_cols=46  Identities=17%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             HHHHHhcCCceEEece-eEEee--CCeE-EEEecCCCeEEEEcCeEEEccCCC
Q psy11185        209 TRVMLRDKKVDYLNAL-GKFID--QHSV-EATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       209 ~~~~~~~~gV~~~~~~-~~~~~--~~~~-~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      +...+...|+++...+ +..+.  ...+ .+.+++|   .+.||.||+|+|.+
T Consensus       143 l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~a~~vV~a~G~~  192 (337)
T TIGR02352       143 LEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG---DVQADQVVLAAGAW  192 (337)
T ss_pred             HHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC---EEECCEEEEcCChh
Confidence            4445667788887664 33332  2333 4566666   68999999999954

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PLN02976 amine oxidase

Probab=80.77  E-value=1.8  Score=45.96  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +...+++|||+|++|+.+|..|.+.|.+++++|..
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~  725 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR  725 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec
Confidence            45678999999999999999999999999999974

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=80.62  E-value=2.1  Score=39.85  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=24.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|+||+|+|..-.-+|..+...|.+|+.+|++.
T Consensus         4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~   37 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRND   37 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred             cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence            7899999999877777778889999999999754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02529 lysine-specific histone demethylase 1

Probab=80.40  E-value=1.7  Score=43.28  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=26.2

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..++|+|||+|.+|+.+|..|...+.+|+|
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v  188 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVV  188 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEE
Confidence            356799999999999999999988888876

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.24  E-value=4.2  Score=38.55  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=44.7

Q ss_pred             cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         47 GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        47 ~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +-...+.+.+.+.+++.|++|+++++|++|...++..+.+...++        ..+++|.||..+.+
T Consensus       221 GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g--------~~~~ad~vv~~~~~  279 (487)
T COG1233         221 GGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG--------ENIEADAVVSNADP  279 (487)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecccc--------ceeccceeEecCch
Confidence            345678888999999999999999999999865433233433332        36789999999887

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=80.20  E-value=1.9  Score=42.32  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..+.+|+|||||..|+-+|..|...+.+|+|
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V  109 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLV  109 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            4556799999999999999999998888876

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=80.11  E-value=5.6  Score=37.00  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.||++++++.++++..+.++.+ .+.+.+... .   ...+.++.||+++|.
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-~---~~~~~a~~VVlAtGg  190 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-G---IYIKAAKAVVLATGG  190 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-e---EEEEecceEEEecCC
Confidence            356778888889999999999999999986544433 455543211 0   124678999999994

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=80.07  E-value=2.7  Score=39.43  Aligned_cols=29  Identities=17%  Similarity=0.153  Sum_probs=24.7

Q ss_pred             CCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        283 PGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .-.|+|||||+.|.-+|..|+..+.+|.|
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vll   67 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFL   67 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            34799999999999999998888777765

>PRK06996 hypothetical protein; Provisional

Probab=80.04  E-value=4.7  Score=37.01  Aligned_cols=58  Identities=12%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..+.+.+.+.+.+.|++++.++++++++.+.++ +.+.+.++...     ..+.+|+||-+-|.
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~-----~~i~a~lvIgADG~  172 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGA-----RTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcc-----eEEeeeEEEECCCC
Confidence            567788888888899999999999998765444 56666543211     36889999988784

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		4e-61
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		5e-61
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		5e-61
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		7e-59
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		9e-59
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		1e-58
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		1e-58
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		1e-58
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		1e-58
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		3e-57
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		3e-57
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		3e-55
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		3e-55
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		3e-55
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		4e-46
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		1e-24
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		5e-24
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		1e-23
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		1e-23
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		2e-23
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		7e-23
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		8e-23
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		9e-23
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		9e-23
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		2e-21
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		2e-21
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		1e-20
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		2e-20
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		2e-20
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		2e-20
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		6e-20
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		4e-19
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		4e-19
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		4e-19
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		4e-19
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		4e-19
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		4e-19
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		1e-18
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		7e-18
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		7e-18
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		7e-18
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		2e-17
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		2e-17
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		3e-17
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		7e-15
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		9e-15
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-14
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		2e-14
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		5e-14
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		2e-13
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		4e-12
3ic9_A	492	The Structure Of Dihydrolipoamide Dehydrogenase Fro		8e-12
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		4e-11
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		5e-11
1bhy_A	482	Low Temperature Middle Resolution Structure Of P64k		1e-10
1ojt_A	482	Structure Of Dihydrolipoamide Dehydrogenase Length		1e-10
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		2e-10
1zk7_A	467	Crystal Structure Of Tn501 Mera Length = 467		3e-09
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		3e-09
3ii4_A	466	Structure Of Mycobacterial Lipoamide Dehydrogenase		1e-07
2a8x_A	464	Crystal Structure Of Lipoamide Dehydrogenase From M		3e-07
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		4e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		5e-06
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-04
1xdi_A	499	Crystal Structure Of Lpda (Rv3303c) From Mycobacter		1e-04
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		3e-04

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 142/195 (72%), Gaps = 4/195 (2%)
Query: 102 YDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPKKL 160
           YDYD                      +V  LD+V P+P  GT WG+GGTCVNVGCIPKKL
Sbjct: 8   YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKL 67
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQA+LLGEA+ +A AYGW + +   ++ +W  L ++VQNH+KSVNWVTRV LRDKKV+Y
Sbjct: 68  MHQASLLGEAVHEAAAYGWNVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEY 125
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ I+SDD+FSL+
Sbjct: 126 INGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLD 184
Query: 281 KPPGKTLVVGAGYIG 295
           + PGKTLVVGAGYIG
Sbjct: 185 REPGKTLVVGAGYIG 199

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  231 bits (588), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 142/195 (72%), Gaps = 4/195 (2%)
Query: 102 YDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPKKL 160
           YDYD                      +V  LD+V P+P  GT WG+GGTCVNVGCIPKKL
Sbjct: 4   YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKL 63
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQA+LLGEA+ +A AYGW + +   ++ +W  L ++VQNH+KSVNWVTRV LRDKKV+Y
Sbjct: 64  MHQASLLGEAVHEAAAYGWNVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEY 121
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ I+SDD+FSL+
Sbjct: 122 INGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLD 180
Query: 281 KPPGKTLVVGAGYIG 295
           + PGKTLVVGAGYIG
Sbjct: 181 REPGKTLVVGAGYIG 195

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  231 bits (588), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 142/195 (72%), Gaps = 4/195 (2%)
Query: 102 YDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPKKL 160
           YDYD                      +V  LD+V P+P  GT WG+GGTCVNVGCIPKKL
Sbjct: 8   YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKL 67
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQA+LLGEA+ +A AYGW + +   ++ +W  L ++VQNH+KSVNWVTRV LRDKKV+Y
Sbjct: 68  MHQASLLGEAVHEAAAYGWNVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEY 125
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ I+SDD+FSL+
Sbjct: 126 INGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLD 184
Query: 281 KPPGKTLVVGAGYIG 295
           + PGKTLVVGAGYIG
Sbjct: 185 REPGKTLVVGAGYIG 199

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YD+D                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 5   KDAPKSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGC 64
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A+KD+  YGW++ +  +V+H+W  + E+VQNH+ S+NW  RV LR+
Sbjct: 65  IPKKLMHQAALLGQALKDSRNYGWKLED--TVKHDWEKMTESVQNHIGSLNWGYRVALRE 122
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA GKFI  H + AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 123 KKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDD 182
Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTLVVGA Y+
Sbjct: 183 LFSLPYCPGKTLVVGASYV 201

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YD+D                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 5   KDAPKSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 64
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A+KD+  YGW++ +  +V+H+W  + E+VQNH+ S+NW  RV LR+
Sbjct: 65  IPKKLMHQAALLGQALKDSRNYGWKLED--TVKHDWEKMTESVQNHIGSLNWGYRVALRE 122
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA GKFI  H + AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 123 KKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDD 182
Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTLVVGA Y+
Sbjct: 183 LFSLPYCPGKTLVVGASYV 201

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 137/199 (68%), Gaps = 2/199 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 27  EDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 86
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 87  IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 144
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 145 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 204
Query: 276 IFSLEKPPGKTLVVGAGYI 294
           +FSL   PGKTLVVGA Y+
Sbjct: 205 LFSLPYCPGKTLVVGASYV 223

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 19  EDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 78
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 79  IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 136
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 137 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 196
Query: 276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
           +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct: 197 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 232

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 25  EDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 84
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 85  IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 142
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 143 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 202
Query: 276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
           +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct: 203 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 238

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 96  QDNTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
           +D    YDYD                     +KV+VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 25  EDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGC 84
Query: 156 IPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           IPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+NW  RV LR+
Sbjct: 85  IPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 142
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG KE+CISSDD
Sbjct: 143 KKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 202
Query: 276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311
           +FSL   PGKTLVVGA Y+  LE     +G G +VT+
Sbjct: 203 LFSLPYCPGKTLVVGASYVA-LECAGFLAGIGLDVTV 238

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           +KV V DYV PSP+GT WGLGGTCVNVGCIPKKLMHQAALLG  I+DA  YGWE+   + 
Sbjct: 30  KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV--AQP 87
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLT 246
           VQHNW  + EAVQNHVKS+NW  RV L+D+KV Y N    F+D+H+V    K G+   L+
Sbjct: 88  VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLS 147
Query: 247 AENILIATGGRPNYP-DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           AE+I+IATGGRP YP  + GA E+ I+SDDIF L++ PGKTLVVGA Y+
Sbjct: 148 AEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYV 196

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           +KV V DYV PSP+GT WGLGGTCVNVGCIPKKLMHQAALLG  I+DA  YGWE+   + 
Sbjct: 56  KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV--AQP 113
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLT 246
           VQHNW  + EAVQNHVKS+NW  RV L+D+KV Y N    F+D+H+V    K G+   L+
Sbjct: 114 VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLS 173
Query: 247 AENILIATGGRPNYP-DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           AE+I+IATGGRP YP  + GA E+ I+SDDIF L++ PGKTLVVGA Y+
Sbjct: 174 AEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYV 222

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 128/198 (64%), Gaps = 1/198 (0%)
Query: 98  NTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP 157
           N  KYDYD                      K  VLDYV P+P GTTWGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           KKLMHQA LL  A++DA  +GW +   K + HNW+ + E VQ+H+ S+NW  +V LRD +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSK-ISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ 220
Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
           V YLNA G+ I  H V+ T KN +  T+T   I++ATG RP YP+IPGA E+ I+SDD+F
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 278 SLEKPPGKTLVVGAGYIG 295
           SL   PGKTLV+GA Y+ 
Sbjct: 281 SLPYFPGKTLVIGASYVA 298

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 128/198 (64%), Gaps = 1/198 (0%)
Query: 98  NTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP 157
           N  KYDYD                      K  VLDYV P+P GTTWGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           KKLMHQA LL  A++DA  +GW +   K + HNW+ + E VQ+H+ S+NW  +V LRD +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSK-ISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ 220
Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
           V YLNA G+ I  H V+ T KN +  T+T   I++ATG RP YP+IPGA E+ I+SDD+F
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 278 SLEKPPGKTLVVGAGYIG 295
           SL   PGKTLV+GA Y+ 
Sbjct: 281 SLPYFPGKTLVIGASYVA 298

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 128/198 (64%), Gaps = 1/198 (0%)
Query: 98  NTHKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP 157
           N  KYDYD                      K  VLDYV P+P GTTWGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           KKLMHQA LL  A++DA  +GW +   K + HNW+ + E VQ+H+ S+NW  +V LRD +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSK-ISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ 220
Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
           V YLNA G+ I  H V+ T KN +  T+T   I++ATG RP YP+IPGA E+ I+SDD+F
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 278 SLEKPPGKTLVVGAGYIG 295
           SL   PGKTLV+GA Y+ 
Sbjct: 281 SLPYFPGKTLVIGASYVA 298

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 125/200 (62%), Gaps = 7/200 (3%)
Query: 100 HKYDYDXXXXXXXXXXXXXXXXXXXXXRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
           H YDYD                      +V++ DYV PS QGT WG+GGTCVNVGC+PKK
Sbjct: 39  HTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKK 98
Query: 160 LMHQAALLGEAIK-DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
           LMH A  +G   K D+ AYGW+  N+K   H+W  L   VQ+H++S+N+     LR  KV
Sbjct: 99  LMHYAGHMGSIFKLDSKAYGWKFDNLK---HDWKKLVTTVQSHIRSLNFSYMTGLRSSKV 155
Query: 219 DYLNALGKFIDQHSVEATMKN--GEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDD 275
            Y+N L K  D+++V   +K    +++T+T + ILIATG RP+ P D+ GAKE  I+SDD
Sbjct: 156 KYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSDD 215
Query: 276 IFSLEKPPGKTLVVGAGYIG 295
           IFSL+K PGKTLVVGA Y+ 
Sbjct: 216 IFSLKKDPGKTLVVGASYVA 235

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 10/151 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSV-QHNWANLREAVQNHVKS 204
           LGGTCVNVGC+PKK+M  AA + EAI     YG +     ++ + NW  L  +   ++  
Sbjct: 38  LGGTCVNVGCVPKKVMWHAAQIREAIH---MYGPDYGFDTTINKFNWETLIASRTAYIDR 94
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
           ++     +L    VD +    +F+D  ++E    NGE  T+TA++ILIATGGRP++PDIP
Sbjct: 95  IHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NGE--TITADHILIATGGRPSHPDIP 149
Query: 265 GAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           G  E+ I SD  F+L   P +  VVGAGYIG
Sbjct: 150 GV-EYGIDSDGFFALPALPERVAVVGAGYIG 179

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 90/151 (59%), Gaps = 10/151 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSV-QHNWANLREAVQNHVKS 204
           LGGTCVNVGC+PKK+M  AA + EAI     YG +     ++ + NW  L  +   ++  
Sbjct: 38  LGGTCVNVGCVPKKVMWHAAQIREAIH---MYGPDYGFDTTINKFNWETLIASRTAYIDR 94
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
           ++     +L    VD +    +F+D  ++E    NGE  T+TA++ILIATGGRP++PDIP
Sbjct: 95  IHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NGE--TITADHILIATGGRPSHPDIP 149
Query: 265 GAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           G  E+ I SD  F+L   P +  VVGAGYI 
Sbjct: 150 GV-EYGIDSDGFFALPALPERVAVVGAGYIA 179

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKKLM   A   + ++++  +GWE  +  SV+ NW  L  A    V  +
Sbjct: 51  LGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF-DGSSVKANWKKLIAAKNEAVLDI 109
Query: 206 NWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPNY 260
           N     M  D + +D+    G    ++ V     A  K+  K+ L A++IL+ATG  P  
Sbjct: 110 NKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQM 169
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           P IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 170 PAIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 202

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKKLM   A   + ++++  +GWE  +  SV+ NW  L  A    V  +
Sbjct: 48  LGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF-DGSSVKANWKKLIAAKNEAVLDI 106
Query: 206 NWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPNY 260
           N     M  D + +D+    G    ++ V     A  K+  K+ L A++IL+ATG  P  
Sbjct: 107 NKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQM 166
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           P IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 167 PAIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 199

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M  A+ L EA++DA  +G +         +W  L      ++ ++
Sbjct: 38  LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQ---ASGGTLDWPRLVAGRDRYIGAI 94
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG 265
           N      +    +  ++   +F+D H++E      E + L+A++I+IATGGRP  P +PG
Sbjct: 95  NSFWDGYVERLGITRVDGHARFVDAHTIEV-----EGQRLSADHIVIATGGRPIVPRLPG 149
Query: 266 AKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           A E  I+SD  F+L++ P +  ++GAGYIG
Sbjct: 150 A-ELGITSDGFFALQQQPKRVAIIGAGYIG 178

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 7/173 (4%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           ++V V+D  +         LGGTCVNVGC+PKKLM   A   E ++++  +GWE  +  +
Sbjct: 29  KRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF-DRTT 87
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGE 241
           ++  W  L       V ++N     M RD + +++    G    ++ V     A   +  
Sbjct: 88  LRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAV 147
Query: 242 KKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           K+ L  ENIL+A+G  P+ P+IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 148 KERLETENILLASGSWPHMPNIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 199

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           ++V V+D  +         LGGTCVNVGC+PKKLM   A   E ++++  +GWE  +  +
Sbjct: 30  KRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF-DRTT 88
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGE 241
           ++  W NL       V ++N     M RD + +++    G    ++ V     A   +  
Sbjct: 89  LRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAV 148
Query: 242 KKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           K+ L  E+IL+A+G  P+ P+IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 149 KERLETEHILLASGSWPHMPNIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 200

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           ++V V+D  +         LGGTCVNVGC+PKKLM   A   E ++++  +GWE  +  +
Sbjct: 28  KRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF-DRTT 86
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGE 241
           ++  W NL       V ++N     M RD + +++    G    ++ V     A   +  
Sbjct: 87  LRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAV 146
Query: 242 KKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           K+ L  E+IL+A+G  P+ P+IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 147 KERLETEHILLASGSWPHMPNIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 198

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           ++V V+D  +         LGGTCVNVGC+PKKLM   A   E ++++  +GWE  +  +
Sbjct: 29  KRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF-DRTT 87
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGE 241
           ++  W NL       V ++N     M RD + +++    G    ++ V     A   +  
Sbjct: 88  LRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAV 147
Query: 242 KKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           K+ L  E+IL+A+G  P+ P+IPG  EHCISS++ F L +PP + L VG G+I
Sbjct: 148 KERLETEHILLASGSWPHMPNIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFI 199

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           +KV V+D            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +S
Sbjct: 49  KKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEM-DRES 107
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSVEATMKNGEK--- 242
           +  NW  L  A    V S+N   + M  D + + +    G   D H+V   ++  E    
Sbjct: 108 LCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTV--VVRKSEDPHS 165
Query: 243 ---KTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
              +TL  E ILIATG  P    +PG  E CI+S++ F LE  P + L VG GYI
Sbjct: 166 DVLETLDTEYILIATGSWPTRLGVPG-DEFCITSNEAFYLEDAPKRMLCVGGGYI 219

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 127 RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS 186
           +KV V+D            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +S
Sbjct: 49  KKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEM-DRES 107
Query: 187 VQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VDYLNALGKFIDQHSVEATMKNGEK--- 242
           +  NW  L  A    V S+N   + M  D + + +    G   D H+V   ++  E    
Sbjct: 108 LCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTV--VVRKSEDPHS 165
Query: 243 ---KTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
              +TL  E ILIATG  P    +PG  E CI+S++ F LE  P + L VG GYI
Sbjct: 166 DVLETLDTEYILIATGSWPTRLGVPG-DEFCITSNEAFYLEDAPKRMLCVGGGYI 219

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW--EIP-NVKSVQHNWANLREAVQNH 201
            LGGTCVNVGC+PKK+M  A+ L   +  A  YG    +P + + +  NW   ++    +
Sbjct: 44  ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAY 103
Query: 202 VKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP 261
           V  +N + +  L  +KVD +    +F    +VE   ++   +  +A +IL+ATGG+  +P
Sbjct: 104 VHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFP 163
Query: 262 D-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           + IPG  E    SD  F LE+ P K +VVGAGYIG
Sbjct: 164 ENIPGF-ELGTDSDGFFRLEEQPKKVVVVGAGYIG 197

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +SV+ NW  L  A    V  
Sbjct: 47  ALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL-DRESVRPNWKALIAAKNKAVSG 105
Query: 205 VNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPN 259
           +N     M  D + + +    G   D H+V     A   +   +TL  E IL+ATG  P 
Sbjct: 106 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 165
Query: 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           +  I G  + CI+S++ F L++ P + L VG GYI
Sbjct: 166 HLGIEG-DDLCITSNEAFYLDEAPKRALCVGGGYI 199

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +SV+ NW  L  A    V  
Sbjct: 46  ALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL-DRESVRPNWKALIAAKNKAVSG 104
Query: 205 VNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPN 259
           +N     M  D + + +    G   D H+V     A   +   +TL  E IL+ATG  P 
Sbjct: 105 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 164
Query: 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           +  I G  + CI+S++ F L++ P + L VG GYI
Sbjct: 165 HLGIEG-DDLCITSNEAFYLDEAPKRALCVGGGYI 198

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +SV+ NW  L  A    V  
Sbjct: 46  ALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL-DRESVRPNWKALIAAKNKAVSG 104
Query: 205 VNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPN 259
           +N     M  D + + +    G   D H+V     A   +   +TL  E IL+ATG  P 
Sbjct: 105 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 164
Query: 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           +  I G  + CI+S++ F L++ P + L VG GYI
Sbjct: 165 HLGIEG-DDLCITSNEAFYLDEAPKRALCVGGGYI 198

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
            LGGTCVNVGC+PKKLM   A   + I+++  +GWE+ + +SV+ NW  L  A    V  
Sbjct: 47  ALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL-DRESVRPNWKALIAAKNKAVSG 105
Query: 205 VNWVTRVMLRDKK-VDYLNALGKFIDQHSV----EATMKNGEKKTLTAENILIATGGRPN 259
           +N     M  D + + +    G   D H+V     A   +   +TL  E IL+ATG  P 
Sbjct: 106 INDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 165
Query: 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYI 294
           +  I G  + CI+S++ F L++ P + L VG GYI
Sbjct: 166 HLGIEG-DDLCITSNEAFYLDEAPKRALCVGGGYI 199

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 53  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 109
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 110 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 166
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 167 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 198

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 54  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 110
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 111 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 167
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 168 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 199

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 55  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 111
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 112 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 168
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 169 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 200

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 37  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 93
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 94  NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 150
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 151 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 182

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 54  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 110
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 111 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 167
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 168 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 199

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 37  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 93
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 94  NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 150
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 151 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 182

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 144 WGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVK 203
           + +GGTCV  GC+PKKL   A+   +    ++ +GW+  +      NW  L  A    + 
Sbjct: 58  YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPI---FNWEKLVAAKNKEIS 114
Query: 204 SVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDI 263
            +  + R  L++  V    +   F+D+H++E ++  GE+  ++AE ILIATG +      
Sbjct: 115 RLEGLYREGLQNSNVHIYESRAVFVDEHTLELSV-TGER--ISAEKILIATGAKIVSNSA 171
Query: 264 PGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
               + C++S++IF LEK P   ++VG GYIG
Sbjct: 172 IKGSDLCLTSNEIFDLEKLPKSIVIVGGGYIG 203

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVG +PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 54  LGGTCVNVGXVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 110
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 111 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 167
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 168 IPGA-SLGITSDGFFQLEELPGRSVIVGAGYIA 199

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGT VNVGC+PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 54  LGGTXVNVGCVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 110
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 111 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 167
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 168 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 199

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 10/153 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVG +PKK+M   A+  E + D   YG+  P+ +  + NW  ++E    +V  +
Sbjct: 54  LGGTCVNVGXVPKKVMWNTAVHSEFMHDHADYGF--PSCEG-KFNWRVIKEKRDAYVSRL 110
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---D 262
           N + +  L    ++ +     F      + T++   KK  TA +ILIATGG P+ P    
Sbjct: 111 NAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKK-YTAPHILIATGGMPSTPHESQ 167
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPGA    I+SD  F LE+ PG++++VGAGYI 
Sbjct: 168 IPGASLG-ITSDGFFQLEELPGRSVIVGAGYIA 199

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGC+PKK+M  AA + + ++++  YG++         N   L E    +++ +
Sbjct: 36  LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFD----TKFSFNLPLLVERRDKYIQRL 91
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHS--VEATMKNGEK-------KTLTAENILIATGG 256
           N + R  L   KVD       F+ ++   ++ T  N  K       + L   NILIA G 
Sbjct: 92  NNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN 151
Query: 257 RPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           +P +P + G  E+ ISSD+ F++ K   K  +VG+GYI 
Sbjct: 152 KPVFPPVKGI-ENTISSDEFFNI-KESKKIGIVGSGYIA 188

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 147 GGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVN 206
           GGTCV  GC+PKKL   A+   E  +DA  +GW    V   + +WA L  A +  +  + 
Sbjct: 40  GGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGW---TVGESRFDWAKLVAAKEQEIARLE 96
Query: 207 WVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGA 266
            + R  L +   + L+   +    ++V+  + +G  KT+TAE I+IA GG P+  D    
Sbjct: 97  GLYRKGLANAGAEILDTRAELAGPNTVK-LLASG--KTVTAERIVIAVGGHPSPHDALPG 153
Query: 267 KEHCISSDDIFSLEKPPGKTLVVGAGYI 294
            E CI+S++ F L   P   L+ G GYI
Sbjct: 154 HELCITSNEAFDLPALPESILIAGGGYI 181

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN----VKSVQHNWANLREAVQNH 201
           LGGTC+NVGCIP K     ALL  +    +A+G +  +    +  V+ N   + E     
Sbjct: 41  LGGTCLNVGCIPSK-----ALLNNSHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTA 95
Query: 202 VKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-Y 260
           VK++      + +  KV ++N  GK   ++ V AT  +G  + +  +NILIATG     +
Sbjct: 96  VKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPF 155
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P I   ++  +SS    SL+K P K +V+GAG IG
Sbjct: 156 PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIG 190

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN----VKSVQHNWANLREAVQNH 201
           LGGTC+NVGCIP K     ALL  +    +A+G +  +    +  V+ N   + E     
Sbjct: 62  LGGTCLNVGCIPSK-----ALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTA 116
Query: 202 VKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-Y 260
           VK++      + +  KV ++N  GK   ++ V AT  +G  + +  +NILIATG     +
Sbjct: 117 VKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPF 176
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P I   ++  +SS    SL+K P K +V+GAG IG
Sbjct: 177 PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIG 211

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN----VKSVQHNWANLREAVQNH 201
           LGGTC+NVGCIP K     ALL  +    +A+G +  +    +  V+ N   + E     
Sbjct: 41  LGGTCLNVGCIPSK-----ALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTA 95
Query: 202 VKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-Y 260
           VK++      + +  KV ++N  GK   ++ V AT  +G  + +  +NILIATG     +
Sbjct: 96  VKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPF 155
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P I   ++  +SS    SL+K P K +V+GAG IG
Sbjct: 156 PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIG 190

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGGTC+NVGCIP K L+H + +  EA      +G ++ NV+       +L   +    K+
Sbjct: 41  LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE------IDLAAMMGQKDKA 94
Query: 205 VNWVTR---VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY 260
           V+ +TR    + +  KV Y+   GKF+    +      GE   +  ++I+IATG    + 
Sbjct: 95  VSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSL 154
Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P +   ++  +SS    +L + P K +V+GAGYIG
Sbjct: 155 PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIG 189

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGGTC+NVGCIP K L+H   L  +A  +   YG  +   + V  + A +++  +  VK 
Sbjct: 37  LGGTCLNVGCIPSKALLHATHLYHDAHANFARYG--LMGGEGVTMDSAKMQQQKERAVKG 94
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-YPDI 263
           +      + +  KV Y    G F   HS+     +G+++ L  +  +IATG  P   P +
Sbjct: 95  LTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFL 154
Query: 264 PGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P  ++  +SS    +L + P   +V+G G IG
Sbjct: 155 PFDEKVVLSSTGALALPRVPKTMVVIGGGVIG 186

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Query: 147 GGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVK-SVQHNWANLREAVQNHVKS 204
           GGTC+NVGCIP K L+H +    +A     A G E+ N K ++Q   A+    V+++V  
Sbjct: 61  GGTCLNVGCIPSKALLHASEXFHQAQHGLEALGVEVANPKLNLQKXXAHKDATVKSNVDG 120
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
           V++    + +  K+D     GK + Q  V  T + GE++ L A+N++IATG   +   IP
Sbjct: 121 VSF----LFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATG--SDVAGIP 174
Query: 265 GA-----KEHCISSDDIFSLEKPP 283
           G      ++  +SS    +LEK P
Sbjct: 175 GVEVAFDEKTIVSSTGALALEKVP 198

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAV-AYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGGTC+NVGCIP K +  ++      K+A   +G E    K V  +   +     N VK+
Sbjct: 44  LGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIE---AKGVTIDVPAMVARKANIVKN 100
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDI 263
           +      + +   V      GK +    VE T  +G+ + L AEN++IA+G RP   P  
Sbjct: 101 LTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPA 160
Query: 264 PGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P + +  + S      +  P K  V+GAG IG
Sbjct: 161 PLSDDIIVDSTGALEFQAVPKKLGVIGAGVIG 192

>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 147 GGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV----KSVQHNWANLREAVQNHV 202
           G TC  VGC P KL+  AA           +G ++  +    K+V       R+      
Sbjct: 43  GTTCARVGCXPSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVXKRIQTERD------ 96
Query: 203 KSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262
           + V +V   +    + D +    KF+D+H    T++  +   + A+ I+IATG RPNYP+
Sbjct: 97  RFVGFVVESVESFDEQDKIRGFAKFLDEH----TLQVDDHSQVIAKRIVIATGSRPNYPE 152
Query: 263 -IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            +  A    +++D++F L   P    V G G IG
Sbjct: 153 FLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIG 186

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGG C+NVGCIP K +  A+   E  K +   G +  NV     ++A ++E   + VK +
Sbjct: 37  LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTI---DFAKVQEWKASVVKKL 93
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEK-KTLTAENILIATGGRPNYPDIP 264
                 +L+  KV+ +     F+D ++V     NG+  +T T +N +IATG RP   ++P
Sbjct: 94  TGGVEGLLKGNKVEIVKGEAYFVDANTVRVV--NGDSAQTYTFKNAIIATGSRP--IELP 149
Query: 265 GAK--EHCISSDDIFSLEKPPGKTLVVGAGYIG-KLETWDSNSGCGNVTI 311
             K     + S    +L + P   +V+G GYIG +L T  +N G   VTI
Sbjct: 150 NFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGT-KVTI 198

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGGTC+NVGCIP K L++ + L  +   +A   G ++     ++ N AN ++A  + VK 
Sbjct: 40  LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG--DIKINVANFQKAKDDAVKQ 97
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNG------EKKTLTAENILIATGGRP 258
           +     ++ +  KV Y    G F D+  +  T  +G      E   L  +NI++ATG   
Sbjct: 98  LTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV 157
Query: 259 N-YPDIPGAKEHCISSDDIFSLEKPP 283
             +P I   +E  +SS    SL++ P
Sbjct: 158 TPFPGIEIDEEKIVSSTGALSLKEIP 183

>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGG C+NVGCIP K L+H AA++ E ++   A G + P     + +   LR      V  
Sbjct: 41  LGGVCLNVGCIPSKALLHNAAVIDE-VRHLAANGIKYPE---PELDIDMLRAYKDGVVSR 96
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMK----------NGEKKTLTAENILIAT 254
           +      M + +KVD +   G+F+D H +E ++            GEKK +  +N +IA 
Sbjct: 97  LTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAA 156
Query: 255 GGR----PNYPDIPGAKEHCISSDDIFSLEKPPGK 285
           G R    P  P+ P      I S    +L++ PGK
Sbjct: 157 GSRVTKLPFIPEDP----RIIDSSGALALKEVPGK 187

>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGG C+NVGCIP K L+H AA++ E ++   A G + P     + +   LR      V  
Sbjct: 41  LGGVCLNVGCIPSKALLHNAAVIDE-VRHLAANGIKYPE---PELDIDMLRAYKDGVVSR 96
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMK----------NGEKKTLTAENILIAT 254
           +      M + +KVD +   G+F+D H +E ++            GEKK +  +N +IA 
Sbjct: 97  LTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAA 156
Query: 255 GGR----PNYPDIPGAKEHCISSDDIFSLEKPPGK 285
           G R    P  P+ P      I S    +L++ PGK
Sbjct: 157 GSRVTKLPFIPEDP----RIIDSSGALALKEVPGK 187

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVK-SVQHNWANLREAVQNHVK 203
           LGGTC+NVGCIP K L+  +    EA +    +G     V   V    A   + V+N   
Sbjct: 44  LGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTG 103
Query: 204 SVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPD 262
            V      +++   V      GK +    VE T  +G  + L  EN+++A+G +P   P 
Sbjct: 104 GVAS----LIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159
Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            P  ++  + S      +  PGK  V+GAG IG
Sbjct: 160 APVDQDVIVDSTGALDFQNVPGKLGVIGAGVIG 192

>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHN-WANLREAVQNHVKS 204
           +GGTCVNVGC+P K+M +AA +    +++   G     V ++  +     ++A  + ++ 
Sbjct: 38  IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRH 97
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
             +   ++  +  +  ++   +F D  S+   +  G ++ +  +  L+ATG  P  P IP
Sbjct: 98  AKY-EGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP 156
Query: 265 GAKEHCI-SSDDIFSLEKPPGKTLVVGAGYIG 295
           G KE    +S +  + +  P +  V+G+  + 
Sbjct: 157 GLKESPYWTSTEALASDTIPERLAVIGSSVVA 188

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 27/171 (15%)
Query: 135 VIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQ--HNWA 192
           ++  P+G    LGG C+  GC+P K           +++ +   W + N+ +V+   +++
Sbjct: 31  LMADPKGE---LGGNCLYSGCVPSK----------TVREVIQTAWRLTNIANVKIPLDFS 77
Query: 193 NLREAVQNHVKSVNWVT--RVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAEN- 249
            +++  +++V+ + +    R M + + + +     K  D   V   +K  E K + AE  
Sbjct: 78  TVQDR-KDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHV--IVKTDEGKEIEAETR 134
Query: 250 -ILIATGGRPNYPDIPGAKEHCISSDDIF----SLEKPPGKTLVVGAGYIG 295
            ++IA+G       +PG  E+C++SDDIF    S  K P   +++GAGYIG
Sbjct: 135 YMIIASGAETAKLRLPGV-EYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIG 184

>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 147 GGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           GG C+NVGCIP K L+  A L+    KDA A+G            +   R+  +  V  V
Sbjct: 40  GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGV 99
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG 265
           ++    +++  K+  ++  G F D +++   + +G  +++T +N +IATG       +PG
Sbjct: 100 HF----LMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRL--VPG 153

>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 147 GGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           GG C+NVGCIP K L+  A L+    KDA A+G            +   R+  +  V  V
Sbjct: 38  GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGV 97
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG 265
           ++    + +  K+  ++  G F D +++   + +G  +++T +N +IATG       +PG
Sbjct: 98  HF----LXKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRL--VPG 151

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 146 LGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           LGGTC+ VGCIP K L+     + EA K     G     VK V+ +   L       V++
Sbjct: 36  LGGTCLRVGCIPSKALLETTERIYEAKK-----GLLGAKVKGVELDLPALMAHKDKVVQA 90
Query: 205 VNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264
                  + +   +       +F+ +  V    + GE+  L A  ILIATG  P  P  P
Sbjct: 91  NTQGVEFLFKKNGIARHQGTARFLSERKV-LVEETGEE--LEARYILIATGSAPLIP--P 145
Query: 265 GAK---EHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            A+   E  ++S +  S  + P + +VVG G IG
Sbjct: 146 WAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIG 179

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 136 IPSPQGTTWGLGGTCVNVGCIPKK-LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANL 194
           IP+       LGGTC+N+GCIP K L+H A    E    A  +    P   SV     ++
Sbjct: 29  IPTVLVEGQALGGTCLNIGCIPSKALIHVA----EQFHQASRFTEPSPLGISVASPRLDI 84
Query: 195 REAVQNHVKSVNWVTR---VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENIL 251
            ++V      V+ +T     +L+   V  ++   K +D   VE    +G++  +  E++L
Sbjct: 85  GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV---DGQR--IQCEHLL 139
Query: 252 IATGGRP-NYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           +ATG      P +P      ISS +  + +  P   +VVG GYIG
Sbjct: 140 LATGSSSVELPMLPLGGP-VISSTEALAPKALPQHLVVVGGGYIG 183

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           +GG C+NVGCIP K +  AA     +K A  +G +      ++      R+ V   VK +
Sbjct: 40  VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK-KLGGWRDQV---VKKL 95
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIP 264
                 +L+   V+ L    + +    VE     GE+    A+++++ATG  P      P
Sbjct: 96  TGGVGTLLKGNGVELLRGFARLVGPKEVEV---GGER--YGAKSLILATGSEPLELKGFP 150
Query: 265 GAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
             ++   S+  +   E  P + LV+G G +G
Sbjct: 151 FGEDVWDSTRALKVEEGLPKRLLVIGGGAVG 181

>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 12/160 (7%)
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKS 204
           G+GG  V   C+P K    +  L   ++ A   G+ I +    + +   +   V+    +
Sbjct: 38  GIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHI-DFDDAKISLPQIHARVKTLAAA 96
Query: 205 VNWVTRVMLRDKKVDYLNALGKFID------QHSVEATMKNGEKKTLTAENILIATGGRP 258
            +      L    V  +   G+ ID      +H ++AT  +G      A+ +L+ATG  P
Sbjct: 97  QSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP 156
Query: 259 NYPDIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIG 295
               +P A+   E  ++   ++ L+  P   +VVG+G  G
Sbjct: 157 RI--LPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTG 194

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 146 LGGTCVNVGCIPKKLMHQAA---LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHV 202
           LGG+C +  C+P  L    A   +L         +      V  ++      R       
Sbjct: 78  LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPH 137
Query: 203 KSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262
             +N+ ++  L  + +  LN   K ID H+VEA       K   A+N+++A G  P   D
Sbjct: 138 GIMNFQSKEQLNLEYI--LNCPAKVIDNHTVEAA-----GKVFKAKNLILAVGAGPGTLD 190
Query: 263 IPG--AKEHCISSDDIFSLEKPPGKTLVVGAG 292
           +PG  AK     +  +  L+  PG T+VV  G
Sbjct: 191 VPGVNAKGVFDHATLVEELDYEPGSTVVVVGG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-110
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-20
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-109
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-108
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	4e-23
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-108
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	4e-24
1fec_A	490	Trypanothione reductase; redox-active center, oxid	1e-103
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-19
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-103
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	3e-19
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-101
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-19
4dna_A	463	Probable glutathione reductase; structural genomic	6e-99
4dna_A	463	Probable glutathione reductase; structural genomic	2e-20
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-98
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	7e-20
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	5e-97
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-18
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	3e-96
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	4e-21
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	6e-92
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	7e-21
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	6e-82
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	8e-17
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	9e-46
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-43
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	8e-05
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	3e-39
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-39
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	1e-36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-36
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	8e-36
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	1e-35
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	2e-35
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	1e-34
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	2e-34
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-33
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-33
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-32
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-32
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	6e-32
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-30
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	5e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-07
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	3e-07
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	1e-06
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	1e-06
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	1e-06
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-06
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-06
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-06
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	2e-06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	4e-06
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	6e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	6e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	9e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	1e-05
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-05
4fk1_A	304	Putative thioredoxin reductase; structural genomic	3e-05
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	3e-05
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	4e-05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	5e-05
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-05
3atr_A	453	Conserved archaeal protein; saturating double bond	7e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	7e-05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	9e-05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	2e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-04
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	2e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	2e-04
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	3e-04
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	4e-04
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	4e-04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	4e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	6e-04
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	6e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	7e-04
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	7e-04
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	7e-04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	7e-04
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	9e-04

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  329 bits (846), Expect = e-110
 Identities = 126/210 (60%), Positives = 159/210 (75%), Gaps = 2/210 (0%)

Query: 86  VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG 145
           V   +     +D    YDYDL+++GGGSGGLAAAKEAA +G+KV+VLD+V P+P GT WG
Sbjct: 15  VPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWG 74

Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
           LGGTCVNVGCIPKKLMHQAALLG+A++D+  YGW++   ++V+H+W  + EAVQNH+ S+
Sbjct: 75  LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSL 132

Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG 265
           NW  RV LR+KKV Y NA G+FI  H ++AT   G++K  +AE  LIATG RP Y  IPG
Sbjct: 133 NWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 192

Query: 266 AKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            KE+CISSDD+FSL   PGKTLVVGA Y+ 
Sbjct: 193 DKEYCISSDDLFSLPYCPGKTLVVGASYVA 222

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-- 79
            LECAGFL G+G + TVM+RS+ LRGFDQ MA  I E M E G+ F+ + +P+ V ++  
Sbjct: 222 ALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEA 281

Query: 80  -ADGKLKVQYKNVAEVRQDNTHKYDYDLL 107
              G+L+V  ++      +   + +Y+ +
Sbjct: 282 GTPGRLRVVAQS---TNSEEIIEGEYNTV 307

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  328 bits (842), Expect = e-109
 Identities = 117/197 (59%), Positives = 145/197 (73%), Gaps = 1/197 (0%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
             KYDYDL+V+GGGSGGLAA KEAA +G K  VLDYV P+P GTTWGLGGTCVNVGCIPK
Sbjct: 103 ESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPK 162

Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
           KLMHQA LL  A++DA  +GW +     + HNW+ + E VQ+H+ S+NW  +V LRD +V
Sbjct: 163 KLMHQAGLLSHALEDAEHFGWSLDR-SKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV 221

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
            YLNA G+ I  H V+ T KN +  T+T   I++ATG RP YP+IPGA E+ I+SDD+FS
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFS 281

Query: 279 LEKPPGKTLVVGAGYIG 295
           L   PGKTLV+GA Y+ 
Sbjct: 282 LPYFPGKTLVIGASYVA 298

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT---- 77
            LECAGFL  LG + TVM+RS+ LRGFDQQMA+ + + M   GV F   C+P  +     
Sbjct: 298 ALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKV 357

Query: 78  ----KLADGKLKVQYKN 90
                   G L V+   
Sbjct: 358 VDTENNKPGLLLVKGHY 374

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  323 bits (831), Expect = e-108
 Identities = 124/196 (63%), Positives = 149/196 (76%), Gaps = 3/196 (1%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
           +  +DLLV+GGGSGGLA AKEAA  G+KV V DYV PSP+GT WGLGGTCVNVGCIPKKL
Sbjct: 4   QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 63

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           MHQAALLG  I+DA  YGWE+   + VQHNW  + EAVQNHVKS+NW  RV L+D+KV Y
Sbjct: 64  MHQAALLGGMIRDAHHYGWEVA--QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKY 121

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDDIFSL 279
            N    F+D+H+V    K G+   L+AE+I+IATGGRP YP  + GA E+ I+SDDIF L
Sbjct: 122 FNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWL 181

Query: 280 EKPPGKTLVVGAGYIG 295
           ++ PGKTLVVGA Y+ 
Sbjct: 182 KESPGKTLVVGASYVA 197

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
            LECAGFL G+G + TVM+RS+PLRGFDQQM+ L+ E M   G  FL  C+P  + KL  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 82  GKLKVQYKNVAEVRQDNTHKYDYDLL 107
            +L+V +++ A           +D +
Sbjct: 257 NQLQVTWEDHAS---GKEDTGTFDTV 279

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  322 bits (827), Expect = e-108
 Identities = 125/198 (63%), Positives = 159/198 (80%), Gaps = 4/198 (2%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIP 157
              YDYDL+V+GGGS GLA AKEA  +G +V  LD+V P+P  GT WG+GGTCVNVGCIP
Sbjct: 5   QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIP 64

Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           KKLMHQA+LLGEA+ +A AYGW + +   ++ +W  L ++VQNH+KSVNWVTRV LRDKK
Sbjct: 65  KKLMHQASLLGEAVHEAAAYGWNVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKK 122

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
           V+Y+N LG F+D H++ A +K+GE+ T+TA+  +IA GGRP YPDIPGA E+ I+SDD+F
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLF 181

Query: 278 SLEKPPGKTLVVGAGYIG 295
           SL++ PGKTLVVGAGYIG
Sbjct: 182 SLDREPGKTLVVGAGYIG 199

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  100 bits (252), Expect = 4e-24
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 1/82 (1%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
           GLECAGFL GLG+  TVM+RS+ LRGFDQQMA+L+   M E G+ FL K +PLSV K  D
Sbjct: 199 GLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDD 258

Query: 82  GKLKVQYKNVAEVRQDNTHKYD 103
           GKL V+YKNV E  +++   YD
Sbjct: 259 GKLLVKYKNV-ETGEESEDVYD 279

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  310 bits (796), Expect = e-103
 Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 8/200 (4%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
             YDL+V+G GSGGL A   AA+ H ++V V+D            LGGTCVNVGC+PKKL
Sbjct: 2   RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VD 219
           M   A   + I+++  +GWE+   +SV+ NW  L  A    V  +N     M  D + + 
Sbjct: 62  MVTGANYMDTIRESAGFGWELDR-ESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120

Query: 220 YLNALGKFIDQHSVE----ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           +    G   D H+V     A   +   +TL  E IL+ATG  P +  I G  + CI+S++
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD-DLCITSNE 179

Query: 276 IFSLEKPPGKTLVVGAGYIG 295
            F L++ P + L VG GYI 
Sbjct: 180 AFYLDEAPKRALCVGGGYIS 199

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 22  GLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT 77
            +E AG  N     G    +  R  + LRGFD ++ K + E++   G++      P  VT
Sbjct: 199 SIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVT 258

Query: 78  KLADGKLKVQYKN 90
           K ADG   V +++
Sbjct: 259 KNADGTRHVVFES 271

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  308 bits (792), Expect = e-103
 Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 8/200 (4%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
             +DL+V+G GSGGL A   AA  +G++V V+D            LGGTCVNVGC+PKKL
Sbjct: 6   KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKL 65

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VD 219
           M   A   + ++++  +GWE     SV+ NW  L  A    V  +N     M  D + +D
Sbjct: 66  MVTGAQYMDHLRESAGFGWEFD-GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124

Query: 220 YLNALGKFIDQHSVE----ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           +    G    ++ V     A  K+  K+ L A++IL+ATG  P  P IPG  EHCISS++
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI-EHCISSNE 183

Query: 276 IFSLEKPPGKTLVVGAGYIG 295
            F L +PP + L VG G+I 
Sbjct: 184 AFYLPEPPRRVLTVGGGFIS 203

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 22  GLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT 77
            +E AG  N     G   T+  R ++ LRGFD+ + + + +++   G+  +    P  V+
Sbjct: 203 SVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVS 262

Query: 78  KLADGKLKVQYKN 90
              DG   V +++
Sbjct: 263 LNTDGSKHVTFES 275

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  305 bits (784), Expect = e-101
 Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 12/200 (6%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
           T+   YD LV+GGGSGG+A+A+ AA++G K ++++            LGGTCVNVGC+PK
Sbjct: 7   TNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE---------AKALGGTCVNVGCVPK 57

Query: 159 KLMHQAALLGEAIKDAVAYGWEIP---NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
           K+M  A+ L   +  A  YG       + + +  NW   ++    +V  +N + +  L  
Sbjct: 58  KVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEK 117

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
           +KVD +    +F    +VE   ++   +  +A +IL+ATGG+  +P+     E    SD 
Sbjct: 118 EKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSDG 177

Query: 276 IFSLEKPPGKTLVVGAGYIG 295
            F LE+ P K +VVGAGYIG
Sbjct: 178 FFRLEEQPKKVVVVGAGYIG 197

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
           G+E AG  +GLG    ++IR    LR FD+ +   I +   + G++       + V K  
Sbjct: 197 GIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNV 256

Query: 81  D-GKLKVQYKN 90
           +  KLK+   +
Sbjct: 257 ETDKLKIHMND 267

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  297 bits (764), Expect = 6e-99
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           +DYDL V+GGGSGG+ + + AAA G+KV + +          +  GGTCV  GC+PKKL 
Sbjct: 4   FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE---------EFRYGGTCVIRGCVPKKLY 54

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
             A+   E  +DA  +GW +   +    +WA L  A +  +  +  + R  L +   + L
Sbjct: 55  VYASQFAEHFEDAAGFGWTVGESR---FDWAKLVAAKEQEIARLEGLYRKGLANAGAEIL 111

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           +   +    ++V+        KT+TAE I+IA GG P+  D     E CI+S++ F L  
Sbjct: 112 DTRAELAGPNTVKLL---ASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168

Query: 282 PPGKTLVVGAGYIG 295
            P   L+ G GYI 
Sbjct: 169 LPESILIAGGGYIA 182

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 90.2 bits (225), Expect = 2e-20
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 22  GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E A   +GLG   T++ R    L  FDQ M + +   M E G+  L + +  SV+  A
Sbjct: 182 AVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADA 241

Query: 81  DGKLKVQYKNVAEVRQD 97
           DG+         E+  D
Sbjct: 242 DGRRVATTMKHGEIVAD 258

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  297 bits (762), Expect = 1e-98
 Identities = 71/194 (36%), Positives = 115/194 (59%), Gaps = 18/194 (9%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
             +DL+ +GGGSGGLA A++AAA G++V +++         +  LGGTCVNVGC+PKK+M
Sbjct: 3   QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE---------SKALGGTCVNVGCVPKKVM 53

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
             A+ L EA++DA  +G +         +W  L      ++ ++N      +    +  +
Sbjct: 54  WYASHLAEAVRDAPGFGVQASGGT---LDWPRLVAGRDRYIGAINSFWDGYVERLGITRV 110

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
           +   +F+D H++E        + L+A++I+IATGGRP  P +PGA E  I+SD  F+L++
Sbjct: 111 DGHARFVDAHTIEVE-----GQRLSADHIVIATGGRPIVPRLPGA-ELGITSDGFFALQQ 164

Query: 282 PPGKTLVVGAGYIG 295
            P +  ++GAGYIG
Sbjct: 165 QPKRVAIIGAGYIG 178

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 88.3 bits (220), Expect = 7e-20
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
           G+E AG L   G   TV+      L  FD  ++  + E M   G+    +    ++ + A
Sbjct: 178 GIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDA 237

Query: 81  DGKLKVQYKN 90
            G   V    
Sbjct: 238 QGTTLVAQDG 247

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  293 bits (753), Expect = 5e-97
 Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 17/200 (8%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI 156
            +   +D+DL V+G GSGG+ AA+ A A G++V + +          + +GGTCV  GC+
Sbjct: 20  GSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE---------EYRIGGTCVIRGCV 70

Query: 157 PKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK 216
           PKKL   A+   +    ++ +GW+  +      NW  L  A    +  +  + R  L++ 
Sbjct: 71  PKKLYFYASQYAQEFSKSIGFGWKYADPI---FNWEKLVAAKNKEISRLEGLYREGLQNS 127

Query: 217 KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY-PDIPGAKEHCISSDD 275
            V    +   F+D+H++E ++     + ++AE ILIATG +      I G+ + C++S++
Sbjct: 128 NVHIYESRAVFVDEHTLELSVT---GERISAEKILIATGAKIVSNSAIKGS-DLCLTSNE 183

Query: 276 IFSLEKPPGKTLVVGAGYIG 295
           IF LEK P   ++VG GYIG
Sbjct: 184 IFDLEKLPKSIVIVGGGYIG 203

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
           G+E A   +GLG   T++ R  + LR FD  + +L+ + M   G+  +++     V    
Sbjct: 203 GVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQS-T 261

Query: 81  DGKLKVQYKN 90
           +    V   N
Sbjct: 262 ENCYNVVLTN 271

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  291 bits (748), Expect = 3e-96
 Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 19/197 (9%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
             YD LV+GGGSGGLA+A+ AA  G +  V++            LGGTCVNVGC+PKK+M
Sbjct: 19  ASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKVM 69

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
              A+  E + D   YG+     K    NW  ++E    +V  +N + +  L    ++ +
Sbjct: 70  WNTAVHSEFMHDHADYGFPSCEGK---FNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEII 126

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---DIPGAKEHCISSDDIFS 278
                F         +     K  TA +ILIATGG P+ P    IPGA    I+SD  F 
Sbjct: 127 RGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPHESQIPGA-SLGITSDGFFQ 182

Query: 279 LEKPPGKTLVVGAGYIG 295
           LE+ PG++++VGAGYI 
Sbjct: 183 LEELPGRSVIVGAGYIA 199

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 92.2 bits (230), Expect = 4e-21
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E AG L+ LG   ++MIR    LR FD  ++    EE+   GV  L       V K  
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 258

Query: 81  DGKLKVQYKNVAEVRQDNTHKYDYDLL 107
            G        V       T   D D L
Sbjct: 259 SGLEVSMVTAVPGRLPVMTMIPDVDCL 285

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  279 bits (717), Expect = 6e-92
 Identities = 76/195 (38%), Positives = 110/195 (56%), Gaps = 19/195 (9%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
             YD + +GGGSGG+A+   AA +G+K  +++            LGGTCVNVGC+PKK+M
Sbjct: 3   KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKVM 53

Query: 162 HQAALLGEAIKD-AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
             AA + EAI      YG++    K    NW  L  +   ++  ++     +L    VD 
Sbjct: 54  WHAAQIREAIHMYGPDYGFDTTINK---FNWETLIASRTAYIDRIHTSYENVLGKNNVDV 110

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
           +    +F+D  ++E        +T+TA++ILIATGGRP++PDIPG  E+ I SD  F+L 
Sbjct: 111 IKGFARFVDAKTLEVN-----GETITADHILIATGGRPSHPDIPGV-EYGIDSDGFFALP 164

Query: 281 KPPGKTLVVGAGYIG 295
             P +  VVGAGYIG
Sbjct: 165 ALPERVAVVGAGYIG 179

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 91.4 bits (228), Expect = 7e-21
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
           G+E  G +NGLG    +      PL  FD  +++ + E M   G       +P +V K  
Sbjct: 179 GVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT 238

Query: 81  DGKLKVQYKN 90
           DG L ++ ++
Sbjct: 239 DGSLTLELED 248

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  255 bits (654), Expect = 6e-82
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 24/202 (11%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YDL+V+GGGSGG+AAA+ AA H  KV +++            LGGTCVNVGC+PKK+M 
Sbjct: 2   VYDLIVIGGGSGGMAAARRAARHNAKVALVE---------KSRLGGTCVNVGCVPKKIMF 52

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
            AA + + ++++  YG++         N   L E    +++ +N + R  L   KVD   
Sbjct: 53  NAASVHDILENSRHYGFDT----KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYE 108

Query: 223 ALGKFIDQHSVE---------ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS 273
               F+ ++ +                 ++ L   NILIA G +P +P + G  E+ ISS
Sbjct: 109 GTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI-ENTISS 167

Query: 274 DDIFSLEKPPGKTLVVGAGYIG 295
           D+ F++++   K  +VG+GYI 
Sbjct: 168 DEFFNIKESK-KIGIVGSGYIA 188

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 79.6 bits (197), Expect = 8e-17
 Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 22  GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E    +  LG ++ +  R +  LR FD+ +  ++  +M +  ++ +     + + K++
Sbjct: 188 AVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVS 247

Query: 81  DGKLKVQYKN 90
           D  L +   +
Sbjct: 248 DKNLSIHLSD 257

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  159 bits (406), Expect = 9e-46
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 17/200 (8%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP-KKLM 161
              + V+G G   +AAA +A   G +V +++      +GT   +GGTCVNVGC+P K ++
Sbjct: 4   PVQVAVIGSGGAAMAAALKAVEQGAQVTLIE------RGT---IGGTCVNVGCVPSKIMI 54

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV--NWVTRVMLRDKKVD 219
             A +     +     G           + + L    Q  V  +       ++  +  + 
Sbjct: 55  RAAHIAHLRRESPFDGGIAATVPTI---DRSKLLAQQQARVDELRHAKYEGILGGNPAIT 111

Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDDIFS 278
            ++   +F D  S+   +  G ++ +  +  L+ATG  P  P IPG KE    +S +  +
Sbjct: 112 VVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALA 171

Query: 279 LEKPPGKTLVVGAGYIGKLE 298
            +  P +  V+G+  +  LE
Sbjct: 172 SDTIPERLAVIGSSVVA-LE 190

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  155 bits (393), Expect = 2e-43
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKKL 160
            +YD + +GGG+ G   +    A G + +++D          W  LGG+C +  C+P  L
Sbjct: 42  REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD---------RWPFLGGSCPHNACVPHHL 92

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK--KV 218
               A      +      W  P++         + +  +      + +     +++    
Sbjct: 93  FSDCAAELMLARTFSGQYW-FPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE 151

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI--SSDDI 276
             LN   K ID H+VE        K   A+N+++A G  P   D+PG     +   +  +
Sbjct: 152 YILNCPAKVIDNHTVE-----AAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLV 206

Query: 277 FSLEKPPGKTLVV-GAGYIGKLE 298
             L+  PG T+VV G      +E
Sbjct: 207 EELDYEPGSTVVVVGGSKTA-VE 228

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 22  GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E   F N  G    +++R+       D +    + + M E G+  +       + + A
Sbjct: 226 AVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDA 285

Query: 81  DGKLKVQYKNVAEVRQDNTHKYDYD-LLV 108
           +G+++     V  +  +   + + D + +
Sbjct: 286 NGRVQA----VVAMTPNGEMRIETDFVFL 310

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  143 bits (362), Expect = 3e-39
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 19/200 (9%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
             + D+ ++G G+ G+ A + A  H  KV++++       G     G TC  VGC+P KL
Sbjct: 6   VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE------GGA---YGTTCARVGCMPSKL 56

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHV-KSVNWVTRVMLRDKKVD 219
           +  AA           +G ++  +     N   + + +Q    + V +V   +    + D
Sbjct: 57  LIAAADASYHASQTDLFGIQVDRISV---NGKAVMKRIQTERDRFVGFVVESVESFDEQD 113

Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY-PDIPGAKEHCISSDDIFS 278
            +    KF+D+H+++      +   + A+ I+IATG RPNY   +  A    +++D++F 
Sbjct: 114 KIRGFAKFLDEHTLQV----DDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFE 169

Query: 279 LEKPPGKTLVVGAGYIGKLE 298
           L   P    V G G IG LE
Sbjct: 170 LNDLPKSVAVFGPGVIG-LE 188

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  142 bits (361), Expect = 4e-39
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 10/199 (5%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKK-L 160
            +D++V+G G GG  AA ++A  G K  +++ Y     +     LGGTC+NVGCIP K L
Sbjct: 3   KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA---LGGTCLNVGCIPSKAL 59

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           +  +    EA +    +G     V     +   +       V+++      +++   V  
Sbjct: 60  LDSSYKFHEAHESFKLHGISTGEVAI---DVPTMIARKDQIVRNLTGGVASLIKANGVTL 116

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSL 279
               GK +    VE T  +G  + L  EN+++A+G +P   P  P  ++  + S      
Sbjct: 117 FEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDF 176

Query: 280 EKPPGKTLVVGAGYIGKLE 298
           +  PGK  V+GAG IG LE
Sbjct: 177 QNVPGKLGVIGAGVIG-LE 194

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  135 bits (343), Expect = 1e-36
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 13/197 (6%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LMH 162
           YD++V+GGG GG  A+ +AA  G K   ++      +G    LGGTC+NVGCIP K L+H
Sbjct: 3   YDVVVIGGGPGGYVASIKAAQLGMKTACVE-----KRGA---LGGTCLNVGCIPSKALLH 54

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
              L  +A  +   YG  +   + V  + A +++  +  VK +      + +  KV Y  
Sbjct: 55  ATHLYHDAHANFARYG--LMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYK 112

Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLEK 281
             G F   HS+     +G+++ L  +  +IATG  P   P +P  ++  +SS    +L +
Sbjct: 113 GEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPR 172

Query: 282 PPGKTLVVGAGYIGKLE 298
            P   +V+G G IG LE
Sbjct: 173 VPKTMVVIGGGVIG-LE 188

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  134 bits (340), Expect = 3e-36
 Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 14/198 (7%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
           + D++++GGG GG  AA +AA  G K   ++      +G    LGGTC+NVGCIP K L+
Sbjct: 6   ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE-----KRGA---LGGTCLNVGCIPSKALL 57

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H + +  EA      +G ++ NV+    + A +       V ++      + +  KV Y+
Sbjct: 58  HSSHMYHEAKHSFANHGVKVSNVEI---DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYV 114

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLE 280
              GKF+    +      GE   +  ++I+IATG    + P +   ++  +SS    +L 
Sbjct: 115 KGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALS 174

Query: 281 KPPGKTLVVGAGYIGKLE 298
           + P K +V+GAGYIG LE
Sbjct: 175 EIPKKLVVIGAGYIG-LE 191

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  133 bits (338), Expect = 8e-36
 Identities = 71/203 (34%), Positives = 98/203 (48%), Gaps = 22/203 (10%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKK-L 160
            YDL+V+G G GG   A +AA  G KV V++              GGTC+NVGCIP K L
Sbjct: 25  AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE---------KRSTYGGTCLNVGCIPSKAL 75

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           +H + +  +A     A G E+ N K    N   +       VKS       + +  K+D 
Sbjct: 76  LHASEMFHQAQHGLEALGVEVANPK---LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDG 132

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK-----EHCISSDD 275
               GK + Q  V  T + GE++ L A+N++IATG       IPG +     +  +SS  
Sbjct: 133 FQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVEVAFDEKTIVSSTG 190

Query: 276 IFSLEKPPGKTLVVGAGYIGKLE 298
             +LEK P   +VVG G IG LE
Sbjct: 191 ALALEKVPASMIVVGGGVIG-LE 212

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  132 bits (335), Expect = 1e-35
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 28/201 (13%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
            YD++VLG G GG  AA  AA  G    +++             GG C+NVGCIP K L+
Sbjct: 3   HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE------PKY---WGGVCLNVGCIPSKALL 53

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANL----REAVQNHVKSVNWVTRVMLRDK- 216
             A L+    KDA A+G        V  ++       R+  +  V  V+      L  K 
Sbjct: 54  RNAELVHIFTKDAKAFGISG----EVTFDYGIAYDRSRKVAEGRVAGVH-----FLMKKN 104

Query: 217 KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSD 274
           K+  ++  G F D +++   + +G  +++T +N +IATG       +PG     + ++ +
Sbjct: 105 KITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPGTSLSANVVTYE 162

Query: 275 DIFSLEKPPGKTLVVGAGYIG 295
           +     + P   ++ GAG IG
Sbjct: 163 EQILSRELPKSIIIAGAGAIG 183

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  132 bits (335), Expect = 2e-35
 Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 17/201 (8%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKK- 159
            D D+ V+G G GG  AA +AA  G K + ++             LGGTC+NVGCIP K 
Sbjct: 5   IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE---------KNETLGGTCLNVGCIPSKA 55

Query: 160 LMHQAALLGEA-IKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
           L++ +     A   D  + G E+  V+    N   + E     VK++      + +  KV
Sbjct: 56  LLNNSHYYHMAHGTDFASRGIEMSEVRL---NLDKMMEQKSTAVKALTGGIAHLFKQNKV 112

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIF 277
            ++N  GK   ++ V AT  +G  + +  +NILIATG     +P I   ++  +SS    
Sbjct: 113 VHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGAL 172

Query: 278 SLEKPPGKTLVVGAGYIGKLE 298
           SL+K P K +V+GAG IG +E
Sbjct: 173 SLKKVPEKMVVIGAGVIG-VE 192

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  129 bits (328), Expect = 1e-34
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 20/199 (10%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
           + + LV+G G GG  AA  AA  G+KV +++      +G    LGG C+NVGCIP K L+
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE------KGN---LGGVCLNVGCIPSKALI 53

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
             +    +A K +   G +  NV     ++A ++E   + VK +      +L+  KV+ +
Sbjct: 54  SASHRYEQA-KHSEEMGIKAENVTI---DFAKVQEWKASVVKKLTGGVEGLLKGNKVEIV 109

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
                F+D ++V     +   +T T +N +IATG RP   ++P  K     + S    +L
Sbjct: 110 KGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPI--ELPNFKFSNRILDSTGALNL 166

Query: 280 EKPPGKTLVVGAGYIGKLE 298
            + P   +V+G GYIG +E
Sbjct: 167 GEVPKSLVVIGGGYIG-IE 184

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  129 bits (327), Expect = 2e-34
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 19/204 (9%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
            +D++++GGG  G  AA +AA  G     ++      +G    LGGTC+NVGCIP K L+
Sbjct: 5   SHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-----KRGK---LGGTCLNVGCIPSKALL 56

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           + + L  +   +A   G ++     ++ N AN ++A  + VK +     ++ +  KV Y 
Sbjct: 57  NNSHLFHQMHTEAQKRGIDVN--GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYY 114

Query: 222 NALGKFIDQHSVEATMKNG------EKKTLTAENILIATGGRP-NYPDIPGAKEHCISSD 274
              G F D+  +  T  +G      E   L  +NI++ATG     +P I   +E  +SS 
Sbjct: 115 KGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSST 174

Query: 275 DIFSLEKPPGKTLVVGAGYIGKLE 298
              SL++ P +  ++G G IG LE
Sbjct: 175 GALSLKEIPKRLTIIGGGIIG-LE 197

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  128 bits (323), Expect = 1e-33
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 22/203 (10%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
             +++LGGG  G  AA  AA    +   +  +         G+GG  V   C+P K    
Sbjct: 3   TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIA 56

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANL----REAVQNHVKSVNWVTRVMLRDKKVD 219
           +  L   ++ A   G+ I +    + +   +    +         +       L    V 
Sbjct: 57  STGLRTELRRAPHLGFHI-DFDDAKISLPQIHARVKTLAAAQSADITA----QLLSMGVQ 111

Query: 220 YLNALGKFID------QHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCIS 272
            +   G+ ID      +H ++AT  +G      A+ +L+ATG  P   P      E  ++
Sbjct: 112 VIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILT 171

Query: 273 SDDIFSLEKPPGKTLVVGAGYIG 295
              ++ L+  P   +VVG+G  G
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTG 194

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  126 bits (318), Expect = 3e-33
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 29/204 (14%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
            YD++V+G G  G   A   A     V++ D     P+G    LGG C+  GC+P K + 
Sbjct: 4   KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD-----PKGE---LGGNCLYSGCVPSKTVR 55

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVT---RVMLRDKKV 218
                    + +       +        +++ +++      +         R M + + +
Sbjct: 56  EVIQTA-WRLTNIANVKIPL--------DFSTVQDRKDYVQELR--FKQHKRNMSQYETL 104

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDI-- 276
            +     K  D   V      G++       ++IA+G       +PG  E+C++SDDI  
Sbjct: 105 TFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGV-EYCLTSDDIFG 163

Query: 277 --FSLEKPPGKTLVVGAGYIGKLE 298
              S  K P   +++GAGYIG LE
Sbjct: 164 YKTSFRKLPQDMVIIGAGYIG-LE 186

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  124 bits (315), Expect = 1e-32
 Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 28/209 (13%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
           +YD++VLGGG GG +AA  AA  G KV +++        T   LGG C+NVGCIP K L+
Sbjct: 6   EYDVVVLGGGPGGYSAAFAAADEGLKVAIVE-----RYKT---LGGVCLNVGCIPSKALL 57

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H AA++ E  +   A G + P  +    +   LR      V  +      M + +KVD +
Sbjct: 58  HNAAVIDEV-RHLAANGIKYPEPEL---DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVI 113

Query: 222 NALGKFIDQHSVE----------ATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EH 269
              G+F+D H +E               GEKK +  +N +IA G R     +P       
Sbjct: 114 QGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLPFIPEDPR 171

Query: 270 CISSDDIFSLEKPPGKTLVVGAGYIGKLE 298
            I S    +L++ PGK L++G G IG LE
Sbjct: 172 IIDSSGALALKEVPGKLLIIGGGIIG-LE 199

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  123 bits (310), Expect = 4e-32
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 21/199 (10%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
              LL++GGG GG  AA  A   G   ++++            LGGTC+N+GCIP K L+
Sbjct: 5   QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE---------GQALGGTCLNIGCIPSKALI 55

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H A    +A +        I +V S + +           V  +      +L+   V  +
Sbjct: 56  HVAEQFHQASRFTEPSPLGI-SVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVV 114

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
           +   K +D   VE      + + +  E++L+ATG      ++P        ISS +  + 
Sbjct: 115 HGWAKVLDGKQVEV-----DGQRIQCEHLLLATGSSSV--ELPMLPLGGPVISSTEALAP 167

Query: 280 EKPPGKTLVVGAGYIGKLE 298
           +  P   +VVG GYIG LE
Sbjct: 168 KALPQHLVVVGGGYIG-LE 185

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  122 bits (309), Expect = 6e-32
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LMH 162
           YDLLV+G G GG  AA  AA  G KV V++      +     LGGTC+ VGCIP K L+ 
Sbjct: 2   YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE-----KEKA---LGGTCLRVGCIPSKALLE 53

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
               + EA K     G ++  V+    +   L       V++       + +   +    
Sbjct: 54  TTERIYEAKKG--LLGAKVKGVEL---DLPALMAHKDKVVQANTQGVEFLFKKNGIARHQ 108

Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLEK 281
              +F+ +  V         + L A  ILIATG  P   P      E  ++S +  S  +
Sbjct: 109 GTARFLSERKVLVE---ETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPE 165

Query: 282 PPGKTLVVGAGYIGKLE 298
            P + +VVG G IG LE
Sbjct: 166 VPKRLIVVGGGVIG-LE 181

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  118 bits (297), Expect = 3e-30
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 26/200 (13%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
            YDL+V+G G GG  AA  AA  G KV+ ++       G    +GG C+NVGCIP K L+
Sbjct: 6   TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE------AGE---VGGVCLNVGCIPTKALL 56

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           H A  L    K A  +G +       + +   L       VK +      +L+   V+ L
Sbjct: 57  HAAETLHHL-KVAEGFGLKA----KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELL 111

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
               + +    VE        +   A+++++ATG  P   ++ G    E    S     +
Sbjct: 112 RGFARLVGPKEVEVG-----GERYGAKSLILATGSEPL--ELKGFPFGEDVWDSTRALKV 164

Query: 280 EKP-PGKTLVVGAGYIGKLE 298
           E+  P + LV+G G +G LE
Sbjct: 165 EEGLPKRLLVIGGGAVG-LE 183

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
            YDL+++G GS G AA   A   G  V++ D ++ P   G+  G   
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTR 48

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 250 ILIATGGRPNYPDIPGA-KEHCISSDDIFSLEKPPGKT-LVVGAGYIG 295
            ++A+G  P  P I G      +S  D+   + P G    ++G G IG
Sbjct: 459 TILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIG 506

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
           YD++V+GGG  GLA A + A  G +V+VL+ +   +  G T G   
Sbjct: 5   YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAER 50

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 49/222 (22%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPKKLMH 162
           +DL+ +G G   +A A       +    L+ +    Q    W               L+ 
Sbjct: 31  HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH-----------GNTLVS 79

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
           Q+ L    +KD V+    + N  S  +++ N        V  +N  T    R +  DYL 
Sbjct: 80  QSELQISFLKDLVS----LRNPTS-PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLR 134

Query: 223 ALGKFIDQH--------SVE--------------ATMKNGEKKTLTAENILIATGGRPNY 260
            +     +          +E              +   +GE+   T   ++++ GG P  
Sbjct: 135 WVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRI 194

Query: 261 PDIPGA---KEHCISS-------DDIFSLEKPPGKTLVVGAG 292
           P +  A                          P K  ++G G
Sbjct: 195 PQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGG 236

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 21/85 (24%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
             H+VE   ++ GE++TL  + +++A G + N P + G     +    +  +        
Sbjct: 95  AAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEG-----MDLAGVTPVTNLDEAEF 149

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                      K ++VG G+IG LE
Sbjct: 150 VQHAISAGEVSKAVIVGGGFIG-LE 173

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 21/85 (24%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
               V    + +G +   + + +L++ G  P  P IPG     + +    SL        
Sbjct: 87  AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPG-----VDNPLTHSLRNIPDMDR 141

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                         VVG G+IG LE
Sbjct: 142 ILQTIQMNNVEHATVVGGGFIG-LE 165

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 19/83 (22%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
           +  +++   +   E+KT   + +++ TG +P  P IPG     I S  ++          
Sbjct: 87  ETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPG-----IDSSRVYLCKNYNDAKK 141

Query: 280 ----EKPPGKTLVVGAGYIGKLE 298
                       ++G+GYIG  E
Sbjct: 142 LFEEAPKAKTITIIGSGYIG-AE 163

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 98  NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
           +TH   +D++V+G GS G+AA  + A  G K +++D +  P   G+  G   
Sbjct: 1   STH---FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTR 49

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 21/85 (24%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
            +H V    + +GE++    + ++I+ G  P   DIPG        D+I+ +        
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPG-----KDLDNIYLMRGRQWAIK 139

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                 +      +V+G+GYIG +E
Sbjct: 140 LKQKTVDPEVNNVVVIGSGYIG-IE 163

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 21/85 (24%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
           ++  V A   K  +    + + +LIATG RP  P+  G          +  L        
Sbjct: 122 EKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEG-----RDLQGVHLLKTIPDAER 176

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                         ++G G IG LE
Sbjct: 177 ILKTLETNKVEDVTIIGGGAIG-LE 200

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           Y+ D++V G G  G+AA+ EAA  G  V+VL+
Sbjct: 40  YEADVVVAGYGIAGVAASIEAARAGADVLVLE 71

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 20/85 (23%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
           ++ ++    +   E      + ++++ G +P  P IPG +E    +  +F+L        
Sbjct: 122 EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEE----AKALFTLRNVPDTDR 177

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                 EK P    V+G G+IG +E
Sbjct: 178 IKAYIDEKKPRHATVIGGGFIG-VE 201

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 21/85 (24%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
           +D   V    +NG +K+   + ++ A G  P  P I G     ++   +F+         
Sbjct: 85  VDTGYVRVR-ENGGEKSYEWDYLVFANGASPQVPAIEG-----VNLKGVFTADLPPDALA 138

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                 +      +++G GYIG +E
Sbjct: 139 IREYMEKYKVENVVIIGGGYIG-IE 162

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 70/201 (34%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
           LV+G G  GL AA+     G  V++ +            LGG       +P         
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAE---AGRD-----LGGRVTQESALPGL------- 439

Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
                                   W  +            +   V+     V+       
Sbjct: 440 ----------------------SAWGRV----------KEYREAVLAELPNVEIY--RES 465

Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD--------IPGA-KEHCISSDDIF 277
            +    +              E+++ ATG               +P A     +  DD+F
Sbjct: 466 PMTGDDIVE---------FGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLF 516

Query: 278 SLEKPPGKTLVV---GAGYIG 295
           +   P GK +VV      Y+G
Sbjct: 517 AGRLPDGKKVVVYDDDHYYLG 537

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 100 HKYDY-DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           H + + D+LV+G G  GLAAA+EA+  G +V++LD
Sbjct: 124 HVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLD 158

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 22/90 (24%)

Query: 229 DQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG------AKEHCISSDDIFSL--- 279
           D  +V A + +G+    T + ++ ATG +P  P I G      + E   + +++  +   
Sbjct: 121 DAKTVTA-LVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLY 179

Query: 280 -----------EKPPGKTLVVGAGYIGKLE 298
                       K   +  VVGAGYIG +E
Sbjct: 180 QNSADVIAKLENKDIKRVAVVGAGYIG-VE 208

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 57  CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK-------YDYDLLVL 109
           C +  E    + ++C    +  +     K +        QD   K           +LV+
Sbjct: 68  CHKGHEEPKFYCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVV 127

Query: 110 GGGSGGLAAAKEAAAHGRKVIVLD 133
           G GS G  A+  A   G  VI++D
Sbjct: 128 GAGSAGFNASLAAKKAGANVILVD 151

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 62/180 (34%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTW-----GLGGTCVNVGCIP 157
            +D++++GG   GL+AA +     + ++++D      +  +      G  G        P
Sbjct: 2   KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGK------AP 55

Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
                   ++ EA +    Y        ++                    VT        
Sbjct: 56  ------GEIIAEARRQIERYP-------TIHWVEG--------------RVTDAKGSF-- 86

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-------HC 270
                  G+F         +  G     TA  +++A G     P+I G +E       HC
Sbjct: 87  -------GEF------IVEIDGGR--RETAGRLILAMGVTDELPEIAGLRERWGSAVFHC 131

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 28/204 (13%), Positives = 58/204 (28%), Gaps = 48/204 (23%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           + + ++G G+ G+  A      G   +++                              +
Sbjct: 5   HKVAIIGAGAAGIGMAITLKDFGITDVIIL-----------------------------E 35

Query: 164 AALLGEAIKDAVAYGWEI-PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
              +G + K        I P+  S      ++     +   +  +    +  +   +YL 
Sbjct: 36  KGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQ 95

Query: 223 ALGKFID-----QHSVEATMKNGE-------KKTLTAENILIATG--GRPNYPDIPGAKE 268
            +    +        V     +          +T  A+ I +ATG    P  P   G   
Sbjct: 96  VVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHY 155

Query: 269 HCISSDDIFSLEKPPGKTLVVGAG 292
             I   D F      G+ +V+G  
Sbjct: 156 SEIEDFDNF----NKGQYVVIGGN 175

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 213 LRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI- 271
            +D+ ++ ++     ID+   +  + +G    +   ++++ATG R    D+P A    + 
Sbjct: 67  FQDQAIELISDRMVSIDREGRKLLLASGT--AIEYGHLVLATGARNRMLDVPNASLPDVL 124

Query: 272 ---SSDDIFSLE---KPPGKTLVVGAGYIGKLET 299
              + D+   L          +V+GAG+IG LE 
Sbjct: 125 YLRTLDESEVLRQRMPDKKHVVVIGAGFIG-LEF 157

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
           +D  +   ++ +G   TL+A+ I+IATG R     +PG++   +    +  D+  L    
Sbjct: 83  LDVQTRTISLDDGT--TLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSW 140

Query: 281 KPPGKTLVVGAGYIGKLET 299
               + L+VG G IG  E 
Sbjct: 141 TSATRLLIVGGGLIG-CEV 158

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 29/88 (32%)

Query: 234 EATMKNGEKKTLTAEN-----------ILIATGGRPNYPDIPGAKEHCISSDDIFSLE-- 280
           E    + E + +               +++ATG       I G       ++ +   +  
Sbjct: 80  EVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRG-----SQTEKLLKYKFL 134

Query: 281 ----------KPPGKTLVVGAGYIGKLE 298
                     +      V+GAG IG +E
Sbjct: 135 SGALAAVPLLENSQTVAVIGAGPIG-ME 161

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 71/221 (32%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
           L++G G  G  AA+     G  V + D    + +     +GG    V  +P         
Sbjct: 393 LIVGAGPSGSEAARVLMESGYTVHLTD---TAEK-----IGGHLNQVAALPGL------- 437

Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
                     Y                  +  +   K+      +  +    D +   G 
Sbjct: 438 --GEWSYHRDY---------------RETQITKLLKKNKESQLALGQKPMTADDVLQYG- 479

Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD--------IPG---AKEHCISSDD 275
                               A+ ++IATG R N           IPG   +    ++ + 
Sbjct: 480 --------------------ADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQ 519

Query: 276 IFSLEKPPGKTLVV---GAGYIGKLET--WDSNSGCGNVTI 311
           +   +K  GK +V+      ++         + +G   VTI
Sbjct: 520 VMDGKKKIGKRVVILNADTYFMA-PSLAEKLATAGH-EVTI 558

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           K   D++++G G  GLAAA  A   G KVI+L+
Sbjct: 124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           +   D+LV+G G  G  AA      G KV +++
Sbjct: 3   REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVE 35

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 53/175 (30%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
            D  V+G G  GL A+       +++ + D      + T                     
Sbjct: 7   IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQ-------------------- 46

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQH-NWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
                                 +         +E   N V     V         +   +
Sbjct: 47  ----------------NSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQS 90

Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-------HC 270
             G F      E   K+       AE +L+ATG +  +P IP  +E        C
Sbjct: 91  T-GLF------EIVTKDHT--KYLAERVLLATGMQEEFPSIPNVREYYGKSLFSC 136

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
            D  +    + +G   TL    +++ATG  P            +    + +D   ++   
Sbjct: 85  FDPQAHTVALSDGR--TLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL 142

Query: 281 KPPGKTLVVGAGYIGKLET 299
           +P  + L+VG G IG LE 
Sbjct: 143 RPQSRLLIVGGGVIG-LEL 160

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLD-YVIPSPQGTTWGLGG 148
              LL++G G+ G + A   A  G   V VLD Y +PS       +  
Sbjct: 6   SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNK 53

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 100 HKYDY-DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            +    D+ ++GGG  G+ AA E   +   V +++
Sbjct: 104 IERVVVDVAIIGGGPAGIGAALELQQYLT-VALIE 137

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS-------DDIFSLE 280
           I++   +  + +G    L  + +++ATGGRP    +        ++       +D   + 
Sbjct: 86  INRDRQQVILSDGR--ALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIR 143

Query: 281 ---KPPGKTLVVGAGYIGKLET 299
                  + +V+G GYIG LE 
Sbjct: 144 RQLIADNRLVVIGGGYIG-LEV 164

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 66/219 (30%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRK---VIVLD-----YVIPSPQGTTWGLGGTCVNVGCIPK 158
           LVLGG  G L AA            V V++     Y  P                     
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP---ALPH-------------- 47

Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
                           VA G      + V     +L EA+    K + +          V
Sbjct: 48  ----------------VAIGV-----RDVDELKVDLSEALPE--KGIQFQE------GTV 78

Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
           + ++A         V  T  +G       + +++  G       + G  ++  S  +   
Sbjct: 79  EKIDA-----KSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEF 133

Query: 279 -------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVT 310
                  LE   G  + +G+G   +            V 
Sbjct: 134 ATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVP 172

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           +  YD+L++GGG  G +AA + +  G K++++D
Sbjct: 4   ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 241 EKKTLTAEN-------ILIATGGRPNYPDIPGAKEHCIS------SDDIFSLEKPPGKTL 287
            +K +  E        +++ATG R   P I G KE+ ++      +D I    +  G+ +
Sbjct: 89  GRKVVITEKGEVPYDTLVLATGARAREPQIKG-KEYLLTLRTIFDADRIKESIENSGEAI 147

Query: 288 VVGAGYIGKLE 298
           ++G G+IG LE
Sbjct: 148 IIGGGFIG-LE 157

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            YD++V+GGG  GL AA  AA  G  V++LD
Sbjct: 26  HYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
           +D  +    + +G    +    ++ ATGG P      GA    +    + +D   L    
Sbjct: 91  LDPAAHTVKLGDGS--AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAEL 148

Query: 281 KPPGKTLVV-GAGYIGKLET 299
               K  VV G GYIG LE 
Sbjct: 149 DAGAKNAVVIGGGYIG-LEA 167

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            D++++G G+ G+  A EA   GR+V+V+D
Sbjct: 28  QDVVIIGAGAAGMMCAIEAGKRGRRVLVID 57

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 88  YKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSP--QGTTWG 145
           + +   + +    K  Y+ +V+GGG  G A A   A   +   + +          TT  
Sbjct: 2   HHHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFE---SGTMGGRTTSA 58

Query: 146 LGG 148
             G
Sbjct: 59  AAG 61

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
               D++V+G G  G +AA  A   G KVI+++
Sbjct: 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIE 156

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            + +++G G+ GL  A + A  G+ V V D
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKLGKSVTVFD 34

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 24/85 (28%)

Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
           ++ +V     K  E+   + + ++++ G   N     G       SD  F+L        
Sbjct: 87  ERQTVSVLNRKTNEQFEESYDKLILSPGASAN---SLG-----FESDITFTLRNLEDTDA 138

Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
                      K LVVGAGY+  LE
Sbjct: 139 IDQFIKANQVDKVLVVGAGYVS-LE 162

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           Q  +  +DY  L++G G  G   A+  A+ G++V+++D
Sbjct: 24  QQESKGFDY--LIVGAGFAGSVLAERLASSGQRVLIVD 59

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGR------KVIVLDYVIPSPQG-TTWGLGGTCV 151
             ++  DLL++GGG G   AA EA           K++++D       G    GL     
Sbjct: 18  IVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINT 77

Query: 152 NVG 154
            +G
Sbjct: 78  YLG 80

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
           YD +V+GGG  GL AA++    G+KV++L
Sbjct: 2   YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 241 EKKTLTAEN--------ILIATGGRPNYPDIPGAKEHCIS------SDDIFSLEKPPGKT 286
             K +T ++        ++IA+G   N   +P A +   S      +  I    K  GK 
Sbjct: 91  NNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA-DEIFSLYSYDDALKIKDECKNKGKA 149

Query: 287 LVVGAGYIGKLET 299
            ++G G +G +E 
Sbjct: 150 FIIGGGILG-IEL 161

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 84  LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVIP 137
              +   + +  +  T   + D+L++GGG  G  AA EAA      G KV +++    
Sbjct: 3   YYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL---DYV------IPSPQGTTWGLGGTCVN 152
             D++V+GGG  G+AAAK     G  V+VL   D V      + + +     LGG+ V 
Sbjct: 4   KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 98  NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           +T    +DL+V+GGG GG   A   A  G +V++L+
Sbjct: 2   STRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLE 37

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 95  RQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           ++       YD++++G G  G   A+E    G KV + D
Sbjct: 38  KKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRP---NYPDIPGAKEHCI-----SSDDIFSL 279
           +D       + +G    +T E  LIATGG P   +  D  GA+            D  SL
Sbjct: 116 LDVRDNMVKLNDGS--QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSL 173

Query: 280 E---KPPGKTLVVGAGYIGKLET 299
           E   +      ++G G++G  E 
Sbjct: 174 EKISREVKSITIIGGGFLG-SEL 195

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 95  RQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
            Q     +++D +V+G G  GL AA   +  G     +  + P+   T    GG    +G
Sbjct: 10  TQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALG 69

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           YD +++G G  G   A E     +KV+V++
Sbjct: 2   YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
             ++D +V+G G  G+ AA + +  G+   +L  V P+   T    GG  V +G
Sbjct: 5   VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALG 58

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
             +L++G G  G    ++ A  G +V ++D
Sbjct: 4   KKILIVGAGFSGAVIGRQLAEKGHQVHIID 33

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
              + ++GGG  G  A       G  V + +
Sbjct: 23  RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
            D+ ++G G  GLAAA      G  V V+
Sbjct: 6   RDVAIVGAGPSGLAAATALRKAGLSVAVI 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.93
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.93
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.92
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.91
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.9
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.86
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.86
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.86
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.86
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.86
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.85
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.85
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.85
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.85
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.85
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.84
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.84
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.84
4dna_A	463	Probable glutathione reductase; structural genomic	99.84
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.84
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.81
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.81
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.74
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.71
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.69
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.66
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.64
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.64
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.63
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.63
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.63
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.63
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.63
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.62
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.61
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.6
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.59
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.59
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.58
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.58
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.57
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.56
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.56
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.55
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.55
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.54
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.54
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.54
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.54
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.53
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.53
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.52
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.52
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.52
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.52
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.52
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.51
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.51
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.51
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.5
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.5
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.5
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.49
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.49
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.49
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.49
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.49
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.48
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.48
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.48
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.47
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.47
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.47
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.47
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.47
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.47
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.47
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.46
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.46
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.46
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.46
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.46
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.46
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.46
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.45
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.45
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.45
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.45
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.45
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.45
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.45
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.44
4dna_A	463	Probable glutathione reductase; structural genomic	99.44
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.44
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.43
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.43
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.43
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.43
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.42
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.42
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.41
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.41
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.4
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.39
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.38
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.38
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.37
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.36
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.36
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.36
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.34
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.32
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.32
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.32
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.31
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.3
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.28
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.27
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.27
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.26
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.26
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.25
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.25
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.24
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.2
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.19
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.18
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.18
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.18
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.15
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.14
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.13
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.13
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.13
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.12
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.09
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.09
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.08
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.07
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.06
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.04
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.03
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.02
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.01
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.97
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.96
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.96
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.96
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.95
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.89
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.88
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.87
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.83
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.83
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.82
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.72
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.7
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.69
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.63
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.63
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.62
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.59
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.59
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.57
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.54
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.53
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.53
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.51
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.49
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.42
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.41
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.4
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.4
3dme_A	369	Conserved exported protein; structural genomics, P	98.39
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.39
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.37
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.37
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.37
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.34
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.31
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.29
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.25
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.24
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.2
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.19
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.14
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.13
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.13
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.12
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.11
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.1
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.06
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.06
3atr_A	453	Conserved archaeal protein; saturating double bond	98.03
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.01
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.0
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.99
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.99
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.96
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.94
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.91
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.91
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.9
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.86
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.85
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.84
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.83
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.82
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.82
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.79
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.79
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.77
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.75
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.75
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.68
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.66
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.63
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.63
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.63
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.62
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.61
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.59
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.58
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.57
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.54
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.53
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.48
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.44
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.37
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.33
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.29
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.28
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.28
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.27
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.25
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.21
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.2
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.18
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.15
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.03
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.96
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.95
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.91
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.89
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.65
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.64
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.55
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.45
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.42
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.39
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.34
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	96.32
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.28
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.25
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.21
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.11
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.1
3atr_A	453	Conserved archaeal protein; saturating double bond	96.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.04
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.98
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	95.91
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.87
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.73
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.67
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.65
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.61
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	95.61
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.45
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.41
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	95.39
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	95.35
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.34
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.29
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	95.24
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	95.21
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	95.2
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.19
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.19
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.18
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.12
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.1
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	94.99
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.95
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	94.88
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	94.83
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	94.68
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	94.59
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.58
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	94.56
3dme_A	369	Conserved exported protein; structural genomics, P	94.54
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.52
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.3
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.24
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	94.19
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	94.17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.15
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	94.01
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	93.96
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	93.82
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	93.68
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	93.64
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.63
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	93.53
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.47
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	93.42
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	93.35
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	93.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	93.08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.03
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	92.99
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	92.94
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	92.9
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	92.63
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.63
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	92.38
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	92.22
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	91.94
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	91.93
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	91.48
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.25
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.94
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	90.77
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	90.47
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	90.43
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	90.38
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.34
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.19
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	90.09
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	89.77
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	89.6
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	89.48
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	89.42
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.33
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	89.07
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	88.76
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	88.67
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	88.65
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	88.45
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	88.17
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	87.99
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	86.49
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	86.46
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	85.57
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	85.13
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	84.74
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	84.56
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	84.35
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	84.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	84.2
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	83.44
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	83.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	83.22
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	83.22
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	83.09
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	82.56
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	82.04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	81.55

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.93  E-value=2.4e-25  Score=209.15  Aligned_cols=209  Identities=53%  Similarity=0.882  Sum_probs=176.0

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH-HHHHcC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK-DAVAYG  178 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~  178 (312)
                      .+++||+||||+||+|+.+|..+.+.|.++.++|+....+...-+..|+.|.+.+|.|++....+......+. ....|+
T Consensus        39 ~~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           39 HTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             CCSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            5678999999999999999999999999999999876665556677899999999999998887776665554 234466


Q ss_pred             CccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEec--CCCeEEEEcCeEEEccCC
Q psy11185        179 WEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMK--NGEKKTLTAENILIATGG  256 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~--~G~~~~i~ad~vVlAtG~  256 (312)
                      +...   ...+||..+..+.....+.+.......++..+|+++.+...+.++..+.+...  .++.+++.+|++|||||+
T Consensus       119 i~~~---~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs  195 (542)
T 4b1b_A          119 WKFD---NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC  195 (542)
T ss_dssp             EEEE---EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred             cccC---cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC
Confidence            5433   36789999999988888887777777888999999999999999998887653  244578999999999999


Q ss_pred             CCCCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|..|+.++. ....+++++++.+...|++++|||||++|+|.|..+...+.+||+
T Consensus       196 ~P~~P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTi  251 (542)
T 4b1b_A          196 RPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTV  251 (542)
T ss_dssp             EECCCSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            9999865544 455789999999999999999999999999999999999999987

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.93  E-value=1.9e-24  Score=203.38  Aligned_cols=209  Identities=60%  Similarity=1.003  Sum_probs=180.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|+....+...-|..|+.|.+.+|.|++....+......+.....+++.
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            45799999999999999999999999999999986655556667899999999999999877777766777777778765


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ...  ...++|..+..+...+.+.+.......+...+|+++.+.....+...+.+.+.+|+..++.||+||||||+.|+.
T Consensus       110 ~~~--~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          110 VEE--TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             CCS--SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cCC--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence            433  357899999988888877777667777788899999999888899999998888865689999999999999999


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|...+.+++.++..+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       188 p~i~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl  238 (519)
T 3qfa_A          188 LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV  238 (519)
T ss_dssp             CCCTTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            999998777788888888888899999999999999999999988888886

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.92  E-value=4.6e-24  Score=199.43  Aligned_cols=209  Identities=60%  Similarity=0.974  Sum_probs=178.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|+........-+..|+.|.+.+|.|++....+......+.....|++.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   83 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE   83 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcc
Confidence            45789999999999999999999999999999975544444446689999999999999887777777777777778765


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ...  ...++|..+..+...+...+.......+...+|+++.+.....+...+.+.+.+|+..++.||+||+|||+.|..
T Consensus        84 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           84 VAQ--PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             CCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             cCC--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            543  357899999888888877777767777888899999999888888999998888866789999999999999999


Q ss_pred             CC-CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PD-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~-~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+ +||...+.+++.++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       162 p~~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  213 (488)
T 3dgz_A          162 PTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTV  213 (488)
T ss_dssp             CSSCBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            98 9998767788888888888899999999999999999999988888886

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.91  E-value=1.6e-23  Score=195.53  Aligned_cols=208  Identities=61%  Similarity=1.061  Sum_probs=176.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCC-CCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSP-QGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~-~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|+..+.. ...-|..|+.|.+.+|.|++....+......+.....|++
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            357899999999999999999999999999999643333 4455778999999999999888777777777777777776


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ....  ...++|..+..+...+.+.+.......+...+|+++.+.....+...+.+.+.+|+ .++.||+||+|||+.|+
T Consensus        87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           87 NVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             CCCC--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEEC
T ss_pred             ccCC--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcC
Confidence            5543  35679999988888887777766667788889999999988888888999888774 67999999999999999


Q ss_pred             CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|.+.+.++++++..+...+++++|||+|.+|+|.+..+...+.+|++
T Consensus       164 ~p~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  215 (483)
T 3dgh_A          164 YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTV  215 (483)
T ss_dssp             CCSSTTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            9999998777788888888888899999999999999999999988888886

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.90  E-value=5.7e-23  Score=196.64  Aligned_cols=210  Identities=58%  Similarity=0.963  Sum_probs=172.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+|++|+.+|..+.+.+.+++++|+..+......|..|+.|...+|.|++....+......+.....|++.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            34689999999999999999999999999999974443345567789989899999988777666666666666667765


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .+. .....+|..+..++..+.+.+.......+...+|+++.+....++.+.+.+.+.+|+..++.||+||+|||+.|+.
T Consensus       185 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~  263 (598)
T 2x8g_A          185 LDR-SKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY  263 (598)
T ss_dssp             CCG-GGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC
T ss_pred             ccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC
Confidence            432 1146789999888888877776666666777899999888888888888888877755679999999999999999


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||...+..++.++......+++|+|||||++|+|+|..|...+.+||+
T Consensus       264 p~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  314 (598)
T 2x8g_A          264 PEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTV  314 (598)
T ss_dssp             CSSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            999998767777777777777889999999999999999999988888886

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.86  E-value=4.2e-21  Score=178.96  Aligned_cols=195  Identities=38%  Similarity=0.629  Sum_probs=158.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++...........+.....+++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~---------~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~   88 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK---------LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFP   88 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC---------CCCcccccCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            346899999999999999999999999999999642         57778888999988776666555555444445543


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..   ...++|..+..+...+.+.+...+...+...+++++.+.....+...+.+. .+|  .++.||+||+|||+.|..
T Consensus        89 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g--~~~~~d~lviAtG~~p~~  162 (478)
T 3dk9_A           89 SC---EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSG--KKYTAPHILIATGGMPST  162 (478)
T ss_dssp             CC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETT--EEEECSCEEECCCEEECC
T ss_pred             CC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECC--EEEEeeEEEEccCCCCCC
Confidence            32   256789998888888877777777777888899999988777766655665 455  579999999999999999


Q ss_pred             C---CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 P---DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p---~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |   +++|.. +.++++++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       163 p~~~~i~G~~-~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  215 (478)
T 3dk9_A          163 PHESQIPGAS-LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL  215 (478)
T ss_dssp             CCTTTSTTGG-GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcCCCCCCc-eeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            9   899986 5678888888888899999999999999999999988888886

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.86  E-value=8.3e-21  Score=176.37  Aligned_cols=191  Identities=24%  Similarity=0.404  Sum_probs=155.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.....      
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~--------~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~------   69 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE--------LGGNCLYSGCVPSKTVREVIQTAWRLTNIAN------   69 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC--------CCCcccccCCCchHHHHHHHHHHHHHHhccc------
Confidence            58999999999999999999999999999996432        6777888899988877666655555544332      


Q ss_pred             CccccccCHHHHHHHHHHHHHHhh--HHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVN--WVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                        ....++|..+..+.....+ +.  ..+...+...+++++.+.+..++...+.+.+.+|+..++.||+||+|||+.|+.
T Consensus        70 --~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~  146 (466)
T 3l8k_A           70 --VKIPLDFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK  146 (466)
T ss_dssp             --SCCCCCHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC
T ss_pred             --CCCCcCHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC
Confidence              1356788888877776666 55  556667788899999988888888889998888844449999999999999999


Q ss_pred             CCCCCCCcceecccccc----CCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIF----SLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~----~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+ ..+++.++.    .+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       147 p~i~G~~-~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  200 (466)
T 3l8k_A          147 LRLPGVE-YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHI  200 (466)
T ss_dssp             CCCTTGG-GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCcc-ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            9999987 566777777    5666788999999999999999999988888886

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.86  E-value=1.8e-20  Score=174.47  Aligned_cols=199  Identities=33%  Similarity=0.426  Sum_probs=155.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH--HHHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK--DAVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~  179 (312)
                      .++|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.  ....+++
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~--------~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~   76 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET--------LGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGI   76 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC--------cCCcccccCccchHHHHHHHHHHHHhhhhhHhhCcc
Confidence            468999999999999999999999999999997532        577788888888776655444444433  3344554


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ...   ...+++..+..+.....+.+...+...+...+++++.++...++...+.+++.+|...++.||+||+|||+.|.
T Consensus        77 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~  153 (474)
T 1zmd_A           77 EMS---EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVT  153 (474)
T ss_dssp             EES---CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             ccC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCC
Confidence            321   24567888877776666666655666777889999988877777888888887633357999999999999999


Q ss_pred             CCCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|.+. ..+++.++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       154 ~p~i~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  206 (474)
T 1zmd_A          154 PFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTA  206 (474)
T ss_dssp             CCTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCcCcEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            999998754 3678888887777889999999999999999999888888886

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.86  E-value=1.2e-20  Score=175.18  Aligned_cols=191  Identities=39%  Similarity=0.694  Sum_probs=151.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++....+......+.....+++...
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~---------~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   74 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA---------LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS   74 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC---------CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC
Confidence            5799999999999999999999999999999752         5777888889988876665555444444444554332


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                         ...++|..+..+...+.+.+...+...+...+++++.+....++.+.+.+   +|  .++.||+||+|||+.|..|+
T Consensus        75 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p~  146 (463)
T 2r9z_A           75 ---GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV---EG--QRLSADHIVIATGGRPIVPR  146 (463)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE---TT--EEEEEEEEEECCCEEECCCS
T ss_pred             ---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE---CC--EEEEcCEEEECCCCCCCCCC
Confidence               24578888888777776666666666677889999988876677766655   56  67999999999999999999


Q ss_pred             CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +||.+ ..++++++..+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       147 i~G~~-~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtl  194 (463)
T 2r9z_A          147 LPGAE-LGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTV  194 (463)
T ss_dssp             CTTGG-GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcc-ceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            99883 4667777777777789999999999999999999888888886

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.86  E-value=2e-20  Score=174.80  Aligned_cols=205  Identities=37%  Similarity=0.605  Sum_probs=159.0

Q ss_pred             cccEEEEecCcchHHHHHHHHH-CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+ .+.+++++|+....+.+.-...|+.|...+|.|++....+......+.....|++..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999 899999999321111111123688899999999988777666655555555555432


Q ss_pred             CCcccc--ccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEe---cCCC-eEEEEcCeEEEcc
Q psy11185        182 PNVKSV--QHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATM---KNGE-KKTLTAENILIAT  254 (312)
Q Consensus       182 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~---~~G~-~~~i~ad~vVlAt  254 (312)
                      .   ..  .++|..+..+.....+.+...+...+... +|+++.++...++...+.+.+   .+|+ ...+.||+||+||
T Consensus        83 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAt  159 (490)
T 1fec_A           83 D---RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT  159 (490)
T ss_dssp             C---GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred             C---CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence            1   12  57888888888777776666666777788 999999987778887777764   2452 2579999999999


Q ss_pred             CCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcC---ceeeee
Q psy11185        255 GGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSG---CGNVTI  311 (312)
Q Consensus       255 G~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~---~~~V~~  311 (312)
                      |+.|..|+++|.+ ..++++++..+...+++++|||+|.+|+|.|..+...   +.+|++
T Consensus       160 Gs~p~~p~i~g~~-~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtl  218 (490)
T 1fec_A          160 GSWPQHLGIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDL  218 (490)
T ss_dssp             CEEECCCCSBTGG-GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCCCCCCCCCcc-ceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEE
Confidence            9999999999884 4677888888877889999999999999999998887   778876

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.85  E-value=1.6e-20  Score=174.92  Aligned_cols=204  Identities=25%  Similarity=0.391  Sum_probs=161.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.|.+++++|+...  ..+-+..|+.|...+|.|++...........+.. ...+++..
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~--~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~   80 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG--KEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIST   80 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC--TTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc--cCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            58999999999999999999999999999998642  2344557888989999988776655544444332 23344433


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      .   ...++|..+..+.....+.+...+...+...+++++.+.....+...+.+.+.+|+...+.||+||+|||+.|..|
T Consensus        81 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~  157 (476)
T 3lad_A           81 G---EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (476)
T ss_dssp             S---CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence            2   3567888888888777777766666777788999999998888888899988888667899999999999998877


Q ss_pred             CCCCCC-cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAK-EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.++.+ ...+++.++..+...+++++|||+|++|+|.+..+...+.+|++
T Consensus       158 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  208 (476)
T 3lad_A          158 PPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTV  208 (476)
T ss_dssp             TTSCCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            666543 34678888888888899999999999999999999888888886

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.85  E-value=1.6e-20  Score=175.65  Aligned_cols=204  Identities=37%  Similarity=0.638  Sum_probs=158.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .++|++|||+|++|+.+|..+.+ .+.+++++|...+.+.+.-...|+.|...+|.|++....+......+.....|++.
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            36899999999999999999999 89999999932221222122468889999999988777666655555555556654


Q ss_pred             cCCcccc--ccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEec-C-----CCeEEEEcCeEE
Q psy11185        181 IPNVKSV--QHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMK-N-----GEKKTLTAENIL  251 (312)
Q Consensus       181 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~-~-----G~~~~i~ad~vV  251 (312)
                      ..   ..  .++|..+..+...+.+.+.......+... +|+++.++...++.+.+.+... +     +  ..+.||+||
T Consensus        86 ~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~--~~~~~d~lV  160 (495)
T 2wpf_A           86 FD---GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVK--ERLQADHIL  160 (495)
T ss_dssp             CC---GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEE--EEEEEEEEE
T ss_pred             cC---CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCC--eEEEcCEEE
Confidence            22   12  67888888888777776666666677778 9999999877778777776531 2     4  689999999


Q ss_pred             EccCCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcC---ceeeee
Q psy11185        252 IATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSG---CGNVTI  311 (312)
Q Consensus       252 lAtG~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~---~~~V~~  311 (312)
                      +|||+.|+.|+++|.+ ..++++++..+...+++++|||+|.+|+|.|..+...   +.+|++
T Consensus       161 iATGs~p~~p~i~G~~-~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtl  222 (495)
T 2wpf_A          161 LATGSWPQMPAIPGIE-HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTL  222 (495)
T ss_dssp             ECCCEEECCCCCTTGG-GCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EeCCCCcCCCCCCCcc-ccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEE
Confidence            9999999999999884 4677788888877889999999999999999998887   778886

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=8.2e-21  Score=177.00  Aligned_cols=200  Identities=37%  Similarity=0.603  Sum_probs=155.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++....+......+.....+++..
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~---------~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~   80 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA---------LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQ   80 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBST
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC---------cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccc
Confidence            36899999999999999999999999999999752         577788888988877655544433333323334322


Q ss_pred             CC--cc-ccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        182 PN--VK-SVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       182 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ..  .. ...++|..+..+...+.+.+...+...+...+++++.++...++.+.+.+++.+|+..++.||+||+|||+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p  160 (479)
T 2hqm_A           81 NLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKA  160 (479)
T ss_dssp             TSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEE
T ss_pred             ccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence            00  01 2457888888777777666666666677788999998887777777888888777445899999999999999


Q ss_pred             CCC-CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYP-DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p-~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..| ++||.+ ..++++++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       161 ~~p~~i~g~~-~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  213 (479)
T 2hqm_A          161 IFPENIPGFE-LGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHL  213 (479)
T ss_dssp             CCCTTSTTGG-GSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCcc-cccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            999 899884 4567778877777899999999999999999999888888886

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.85  E-value=2.8e-20  Score=172.92  Aligned_cols=199  Identities=30%  Similarity=0.446  Sum_probs=153.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.. ...++...
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~--------~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~   73 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA--------LGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMG   73 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC--------cCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            47999999999999999999999999999997532        5777888888887765554443333332 33345332


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      ..  ...+++..+..+.....+.+...+...+.+.+++++.++...++...+.+.+.+|+..++.||+||+|||+.|..|
T Consensus        74 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           74 GE--GVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             GG--GCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            01  2356777777766665555555555666778999998887777888888888777557899999999999999999


Q ss_pred             CCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +++|.+. ..+++.++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       152 ~~~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  202 (468)
T 2qae_A          152 PFLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTV  202 (468)
T ss_dssp             TTBCCCSSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCcCceechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEE
Confidence            8888754 4677888887777889999999999999999999888888886

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.85  E-value=3.7e-20  Score=173.16  Aligned_cols=197  Identities=34%  Similarity=0.493  Sum_probs=156.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  180 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+..        ..|+.|...+|.|++.............. ...++..
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~--------~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~   95 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS--------TYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVE   95 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC--------CCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcc
Confidence            46899999999999999999999999999999743        26778888899998876665555444433 2445544


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..   ...++|..+..+.......+.......+...+++++.+.....+.+.+.+.+.+|+..++.||+||+|||+.|  
T Consensus        96 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--  170 (491)
T 3urh_A           96 VA---NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--  170 (491)
T ss_dssp             CC---CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--
T ss_pred             cC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--
Confidence            32   2467888888887777776666667778888999999998888888999988888667899999999999876  


Q ss_pred             CCCCCCC-----cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAK-----EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~-----~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+     ...+++.+.......+++++|||+|.+|+|.|..+...+.+|++
T Consensus       171 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  226 (491)
T 3urh_A          171 AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTV  226 (491)
T ss_dssp             CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            4556553     23567778888888899999999999999999999888888886

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.85  E-value=3.4e-20  Score=171.77  Aligned_cols=196  Identities=31%  Similarity=0.423  Sum_probs=147.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++...........+.....++..+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~---------~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~   73 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN---------LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAE   73 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC---------CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccC
Confidence            5799999999999999999999999999999751         4666777788887655544433333332233343221


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                         ...+++..+..+.....+.+...+...+...+++++.++....+...+.+++.+|+ .++.||+||+|||+.|..|+
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~-~~i~~d~lViATGs~p~~~~  149 (455)
T 1ebd_A           74 ---NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSA-QTYTFKNAIIATGSRPIELP  149 (455)
T ss_dssp             ---SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEE-EEEECSEEEECCCEEECCBT
T ss_pred             ---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCc-EEEEeCEEEEecCCCCCCCC
Confidence               23456776665555444445555566677789999988876677788888876662 57999999999999999998


Q ss_pred             CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++|.+...+++.++..+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       150 ~~g~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  198 (455)
T 1ebd_A          150 NFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTI  198 (455)
T ss_dssp             TBCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCccceEecHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            8887655677777777777789999999999999999999888888886

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.85  E-value=1.3e-20  Score=174.25  Aligned_cols=191  Identities=40%  Similarity=0.693  Sum_probs=151.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH-HHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK-DAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++....+......+. ....+++..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~---------~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~   74 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE---------LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT   74 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC---------CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccC
Confidence            5799999999999999999999999999999752         577788889999887666555444443 333344332


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      .   ...++|..+..+...+.+.+...+...+...+++++.++...++.+.+.+   +|  .++.||+||+|||+.|..|
T Consensus        75 ~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p  146 (450)
T 1ges_A           75 T---INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSHP  146 (450)
T ss_dssp             E---EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECCC
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE---CC--EEEEeCEEEECCCCCCCCC
Confidence            2   24578888888777777766666666777889999988877677766555   56  6899999999999999999


Q ss_pred             CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+ ..++++++..+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       147 ~i~g~~-~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  195 (450)
T 1ges_A          147 DIPGVE-YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHL  195 (450)
T ss_dssp             CSTTGG-GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCcc-ceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            999884 4667777777777789999999999999999999888888886

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.85  E-value=2.4e-20  Score=174.71  Aligned_cols=192  Identities=36%  Similarity=0.587  Sum_probs=139.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++....+......+.....+++...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~---------~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~   72 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR---------LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK   72 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS---------TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC---------cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC
Confidence            4799999999999999999999999999999752         5777888888888776655555555544444554322


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEe-----------cCCCeEEEEcCeEE
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATM-----------KNGEKKTLTAENIL  251 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~-----------~~G~~~~i~ad~vV  251 (312)
                          ..++|..+..+.......+...+...+...+++++.++...++.+.+.+..           .++  .++.||+||
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~--~~~~~d~lV  146 (500)
T 1onf_A           73 ----FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNE--EILEGRNIL  146 (500)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEE
T ss_pred             ----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCc--eEEEeCEEE
Confidence                356788777666655555555555667778999988876555555555543           124  579999999


Q ss_pred             EccCCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        252 IATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       252 lAtG~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|||+.|..|+++|.+ ..++++++..+.. +++++|||+|.+|+|.|..|...+.+|++
T Consensus       147 iAtGs~p~~p~i~G~~-~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  204 (500)
T 1onf_A          147 IAVGNKPVFPPVKGIE-NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYI  204 (500)
T ss_dssp             ECCCCCBCCCSCTTGG-GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             ECCCCCCCCCCCCCCC-cccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEE
Confidence            9999999999999984 4667777777766 89999999999999999999988888886

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.84  E-value=1.7e-20  Score=175.42  Aligned_cols=196  Identities=26%  Similarity=0.430  Sum_probs=154.2

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++....+......+.....|++
T Consensus         5 ~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~---------~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~   75 (492)
T 3ic9_A            5 KVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA---------YGTTCARVGCMPSKLLIAAADASYHASQTDLFGI   75 (492)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC---------SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTE
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC---------CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCc
Confidence            3456899999999999999999999999999999742         7788999999999888777665555555455554


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ...   ...+++..+..++....+.+...+...+... +++++.+...+.+.+.+.+  .++  .++.||+||+|||+.|
T Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~--~~~--~~~~~d~lViATGs~p  148 (492)
T 3ic9_A           76 QVD---RISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQV--DDH--SQVIAKRIVIATGSRP  148 (492)
T ss_dssp             ECS---EEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEE--TTT--EEEEEEEEEECCCEEC
T ss_pred             CCC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEE--cCC--cEEEeCEEEEccCCCC
Confidence            321   3457888888888777666655444444443 5778888877777776555  466  7899999999999999


Q ss_pred             CCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|++++. ...++++.+++.+...+++++|||+|++|+|.|..+...+.+|++
T Consensus       149 ~~p~~~~~~~~~v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtl  202 (492)
T 3ic9_A          149 NYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKV  202 (492)
T ss_dssp             CCCHHHHTTGGGEECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCccCCcEEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            99886653 445788888888888899999999999999999999998888886

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=4.9e-20  Score=171.36  Aligned_cols=199  Identities=29%  Similarity=0.449  Sum_probs=150.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  180 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.. ...++..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~--------~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~   76 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA--------LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVK   76 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS--------SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC--------ccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcc
Confidence            368999999999999999999998999999997532        3666777788887655544433333332 3334433


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..   ...+++..+..+.....+.+...+...+...+++++.++....+...+.+++.+|+..++.||+||+|||+.|..
T Consensus        77 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~  153 (470)
T 1dxl_A           77 VS---NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS  153 (470)
T ss_dssp             ES---CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred             cC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence            21   234577776666555555555555566667799999888766777788888777754679999999999999999


Q ss_pred             CCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+. ..+++.++..+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       154 p~~~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  205 (470)
T 1dxl_A          154 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTV  205 (470)
T ss_dssp             BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCcccEEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            99988754 4677778777777889999999999999999999887778886

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.84  E-value=6e-20  Score=170.64  Aligned_cols=197  Identities=25%  Similarity=0.421  Sum_probs=144.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHc-CCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAY-GWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~  181 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++....+............+ +...
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~---------~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~   74 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT---------IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAA   74 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS---------TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC---------CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccC
Confidence            5799999999999999999999999999999752         56778888888877655443332222221111 1111


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                         .....++..+........+.+.. .....+... +++++.+.....+.+.+.+.+.+|+..++.||+||+|||+.|+
T Consensus        75 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~  151 (467)
T 1zk7_A           75 ---TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA  151 (467)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC
T ss_pred             ---CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC
Confidence               12345666666554443333321 123445566 9999888877788888888887776568999999999999999


Q ss_pred             CCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|.+.. .+++.++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       152 ~p~i~G~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  204 (467)
T 1zk7_A          152 VPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTV  204 (467)
T ss_dssp             CCCCTTTTTSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCcCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            9999998653 567777777777889999999999999999999988888886

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.84  E-value=3.1e-20  Score=172.01  Aligned_cols=193  Identities=29%  Similarity=0.418  Sum_probs=147.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      +|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.. ..+++... 
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~--------~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~-   71 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA--------LGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVK-   71 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEEC-
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC--------CCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccC-
Confidence            6999999999999999999999999999997532        5667888888887665544433333332 33443321 


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDI  263 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~  263 (312)
                        ...+++..+..+.....+.+...+...+...+++++.++....+.+.+.+.+ +|  .++.||+||+|||+.|..|++
T Consensus        72 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g--~~~~~d~lviAtG~~p~~~~~  146 (455)
T 2yqu_A           72 --GVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TG--EELEARYILIATGSAPLIPPW  146 (455)
T ss_dssp             --CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TC--CEEEEEEEEECCCEEECCCTT
T ss_pred             --CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CC--EEEEecEEEECCCCCCCCCCC
Confidence              2356777777666655555555555666777999998887777777788876 66  689999999999999999998


Q ss_pred             CCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        264 PGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       264 ~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|.+. ..+++.++..+...+++++|||+|.+|++.|..|...+.+|++
T Consensus       147 ~g~~~~~v~~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~l  195 (455)
T 2yqu_A          147 AQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIV  195 (455)
T ss_dssp             BCCCSSSEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCcCcEechHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            88754 4677777777777789999999999999999999888888876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.84  E-value=3.5e-20  Score=172.04  Aligned_cols=194  Identities=35%  Similarity=0.629  Sum_probs=157.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+|++|+.+|..+.+.|.+++++|+.         ..|+.|...+|.|++...........+.....|++..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~---------~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~   74 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF---------RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTV   74 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS---------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC---------CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            3689999999999999999999999999999973         2677788889999888777666666666666666543


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC-C
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-Y  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~-~  260 (312)
                      ..   ..++|..+..+.......+...+...+...+++++.+.....+...+.+. .++  ..+.+|+||+|||+.|. .
T Consensus        75 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~-~~~--~~~~~d~lviAtG~~p~~~  148 (463)
T 4dna_A           75 GE---SRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLL-ASG--KTVTAERIVIAVGGHPSPH  148 (463)
T ss_dssp             CC---CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEET-TTT--EEEEEEEEEECCCEEECCC
T ss_pred             CC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEe-cCC--eEEEeCEEEEecCCCcccC
Confidence            32   46788888888777776666666667777899999988777776655553 455  68999999999999999 9


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+ ..++++++..+...+++++|||+|.+|+|.+..+...+.+|++
T Consensus       149 p~i~G~~-~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~  198 (463)
T 4dna_A          149 DALPGHE-LCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTL  198 (463)
T ss_dssp             TTSTTGG-GCBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCcc-ccccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            9999985 4677888888888899999999999999999999888888876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.84  E-value=8.6e-20  Score=170.33  Aligned_cols=194  Identities=34%  Similarity=0.629  Sum_probs=158.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+|++|+.+|..+.+.|.+++++|+..         .|+.|...+|.|++....+......+.....|++..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~---------~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~   95 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR---------IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKY   95 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC---------CCCceeccCccccHHHHHHHHHHHHHHHHHhCCccc
Confidence            46899999999999999999999999999999732         577788899999988877777777777777777654


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC-C
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-Y  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~-~  260 (312)
                      ..   ..+++..+..+.......+...+...+...+++++.+.....+...+.+. .++  ..+.+|+||+|||+.|. .
T Consensus        96 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~-~~~--~~~~~d~lviAtG~~p~~~  169 (484)
T 3o0h_A           96 AD---PIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELS-VTG--ERISAEKILIATGAKIVSN  169 (484)
T ss_dssp             CC---CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TTC--CEEEEEEEEECCCEEECCC
T ss_pred             CC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEe-cCC--eEEEeCEEEEccCCCcccC
Confidence            33   46788888888777777666666677788899999998877777766654 255  68999999999999999 8


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+ ..++++++..+...+++++|||+|.+|++.+..+...+.+|++
T Consensus       170 p~i~G~~-~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  219 (484)
T 3o0h_A          170 SAIKGSD-LCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTL  219 (484)
T ss_dssp             --CBTGG-GSBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCcc-ccccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            9999975 4677788888888899999999999999999998888778875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.83  E-value=1.1e-19  Score=168.82  Aligned_cols=196  Identities=26%  Similarity=0.425  Sum_probs=146.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH-HHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK-DAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++...........+. ....++.. 
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~---------~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-   72 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY---------WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-   72 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC---------CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            4799999999999999999999999999999751         356677777777665444333322222 11222322 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                         ....+++..+..+.....+.+...+...+...+++++.++....+...+.+.+.+|+..++.||+||+|||+.|+.|
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~  149 (464)
T 2a8x_A           73 ---GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLV  149 (464)
T ss_dssp             ---ECCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCC
T ss_pred             ---CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence               12346777666555544455555556667778999988886666777888887777546799999999999999999


Q ss_pred             CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +++|.+...+++.++..+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       150 ~~~g~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  199 (464)
T 2a8x_A          150 PGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTI  199 (464)
T ss_dssp             TTCCCBTTEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceEEecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            98887655677778777777889999999999999999999888888886

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.83  E-value=1.2e-19  Score=168.34  Aligned_cols=190  Identities=29%  Similarity=0.448  Sum_probs=145.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|.+.+|.|++...........+.....+++.  
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~---------~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~--   74 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE---------VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK--   74 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE--
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC---------CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC--
Confidence            5899999999999999999999999999999743         46778888888887665554444444444445543  


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                      .  ...+++..+..+.....+.+.......+...+|+++.++....+.+.+.+.   |  .++.||+||+|||+.|+.|+
T Consensus        75 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~---g--~~~~~d~lViATGs~p~~p~  147 (464)
T 2eq6_A           75 A--KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG---G--ERYGAKSLILATGSEPLELK  147 (464)
T ss_dssp             C--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET---T--EEEEEEEEEECCCEEECCBT
T ss_pred             C--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc---c--EEEEeCEEEEcCCCCCCCCC
Confidence            1  245678877776666555555555566777899999888766676666553   5  58999999999999999886


Q ss_pred             -CCCCCcceeccccccCCCC-CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        263 -IPGAKEHCISSDDIFSLEK-PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       263 -~~g~~~~~~~~~~~~~~~~-~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       +++. ...+++.++..+.. .+++++|||+|.+|+|.|..|...+.+|+|
T Consensus       148 gi~~~-~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  197 (464)
T 2eq6_A          148 GFPFG-EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTL  197 (464)
T ss_dssp             TBCCS-SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCC-CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence             7773 34567777777765 789999999999999999999888888886

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=1.7e-19  Score=167.22  Aligned_cols=193  Identities=26%  Similarity=0.396  Sum_probs=146.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHH---c
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVA---Y  177 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~  177 (312)
                      ...+|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++....+......+.....   +
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~---------~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~   73 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA---------LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPL   73 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC---------CCCcCCCcCcHhHHHHHHHHHHHHHHhhccccccc
Confidence            346899999999999999999999899999999732         6777888888888765554444443333222   3


Q ss_pred             CCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        178 GWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      +....   ...+++..+..+.....+.+.......++..+|+++.++....+.+.+.+  .+   .++.||+||+|||+.
T Consensus        74 g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v--~~---~~~~~d~lviATGs~  145 (458)
T 1lvl_A           74 GISVA---SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV--DG---QRIQCEHLLLATGSS  145 (458)
T ss_dssp             CCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE--TT---EEEECSEEEECCCEE
T ss_pred             CcccC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEE--ee---EEEEeCEEEEeCCCC
Confidence            43321   24578888888777766666655666777889999988876666665554  22   579999999999999


Q ss_pred             CCCCC-CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPD-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~-~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+ ++ .+...+++.++..+...+++++|||||.+|+|+|..|...+.+|++
T Consensus       146 p~~~~~~~-~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  199 (458)
T 1lvl_A          146 SVELPMLP-LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSV  199 (458)
T ss_dssp             ECCBTTBC-CBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCC-ccCcEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            98776 55 3334677788877777889999999999999999999888888886

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.82  E-value=3.6e-19  Score=166.02  Aligned_cols=198  Identities=33%  Similarity=0.531  Sum_probs=146.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .++|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+.....++..+
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~--------~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~   76 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT--------LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKY   76 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC--------CCCceeeecccchHHHHHHHHHHHHHHHHHhCCccc
Confidence            468999999999999999999999999999997432        456677778887765554444444443333344332


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCC----------CeEEEEcCeEE
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNG----------EKKTLTAENIL  251 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G----------~~~~i~ad~vV  251 (312)
                      .   ...+++..+..+.....+.+...+...+...+++++.++....+...+.+++.+|          +..++.||+||
T Consensus        77 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lV  153 (482)
T 1ojt_A           77 P---EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI  153 (482)
T ss_dssp             C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEE
Confidence            2   2356777776665555555555555667778999988886666777777765443          23579999999


Q ss_pred             EccCCCCCCCC-CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        252 IATGGRPNYPD-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       252 lAtG~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|||++|..|+ ++ .+...+++.++..+...+++++|||||.+|+|.|..|...+.+|+|
T Consensus       154 iAtGs~p~~~~~i~-~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtl  213 (482)
T 1ojt_A          154 IAAGSRVTKLPFIP-EDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDV  213 (482)
T ss_dssp             ECCCEEECCCSSCC-CCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             ECCCCCCCCCCCCC-ccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            99999998887 55 3335678888888777899999999999999999999888888886

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.81  E-value=3.8e-19  Score=166.57  Aligned_cols=199  Identities=24%  Similarity=0.348  Sum_probs=147.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHC---CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH---GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~---~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      .+|+||||+|++|+.+|..+.+.   +.+++++|+..         .|+.|...+|.|++...........+.....++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~---------~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~   72 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG---------IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF   72 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC---------TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC---------cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCC
Confidence            47999999999999999999988   88999999743         4666777888887665544433333222222232


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC------CeEEEEecCCCeEEEEcCeEEEc
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ------HSVEATMKNGEKKTLTAENILIA  253 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~------~~~~v~~~~G~~~~i~ad~vVlA  253 (312)
                      ... .....+++..+..+.....+.+...+...+...+++++.++...++.      ..+.+.+.+|+...+.||+||+|
T Consensus        73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviA  151 (499)
T 1xdi_A           73 HID-FDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVA  151 (499)
T ss_dssp             C-------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred             ccc-cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEc
Confidence            100 01234677777777666555555555666777899999888766666      66778777774347999999999


Q ss_pred             cCCCCCCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        254 TGGRPNYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       254 tG~~p~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ||+.|..|+++|.+.. .+++.++..+...+++++|||+|.+|+|.+..+...+.+|++
T Consensus       152 TGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  210 (499)
T 1xdi_A          152 TGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTV  210 (499)
T ss_dssp             CCEEECCCGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCCCCCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            9999999999987643 567777777777889999999999999999999888888876

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.81  E-value=6.4e-19  Score=164.20  Aligned_cols=197  Identities=30%  Similarity=0.484  Sum_probs=144.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH-HHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK-DAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|...+|.|++...........+. ....++...
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~--------~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~   76 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK--------LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDV   76 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------cCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            57999999999999999999999999999997432        466777788888776554443333332 122233221


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEE------EEcCeEEEccC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKT------LTAENILIATG  255 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~------i~ad~vVlAtG  255 (312)
                      .  ....+++..+..+.....+.+...+...+...+|+++.++....+...+.+++.+|+..+      +.||+||+|||
T Consensus        77 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtG  154 (478)
T 1v59_A           77 N--GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATG  154 (478)
T ss_dssp             C--SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCC
T ss_pred             C--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcC
Confidence            0  123567777777666666666555666677789999988866667778888877763235      99999999999


Q ss_pred             CCCCCCCCCCCC---cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        256 GRPNYPDIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~---~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+.  +||.+   ...+++.++..+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus       155 s~p~~--~~g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  211 (478)
T 1v59_A          155 SEVTP--FPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTV  211 (478)
T ss_dssp             EEECC--CTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCC--CCCCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            88743  34432   13567778877777789999999999999999999988888886

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.79  E-value=2.8e-19  Score=157.31  Aligned_cols=167  Identities=21%  Similarity=0.205  Sum_probs=108.5

Q ss_pred             CccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcC
Q psy11185         99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYG  178 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  178 (312)
                      |++++||++|||+||+|+.+|..+.+.+.+++++|+..         .|+.|...+|.+.                    
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~---------~gG~~~~~~~i~~--------------------   52 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI---------PGGQMANTEEVEN--------------------   52 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTGGGGGCSCBCC--------------------
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC---------CCCeeecccccCC--------------------
Confidence            34578999999999999999999999999999999743         3555655554321                    


Q ss_pred             CccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        179 WEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                        ++.  ........+....           .....+....+.... ..............++  .++.||+||||||+.
T Consensus        53 --~p~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~  115 (312)
T 4gcm_A           53 --FPG--FEMITGPDLSTKM-----------FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGN--KELTAKAVIIATGAE  115 (312)
T ss_dssp             --STT--CSSBCHHHHHHHH-----------HHHHHHTTCEEEECCCCEEEECSSCEEEECSS--CEEEEEEEEECCCEE
T ss_pred             --cCC--ccccchHHHHHHH-----------HHHHhhccccccceeeeeeeeeecceeeccCC--eEEEeceeEEcccCc
Confidence              000  0111222222111           112233344443332 2222222233334455  689999999999999


Q ss_pred             CCCCCCCCCCcce----eccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEHC----ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~~----~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|++||.+.+.    ..+.........+|+|+|||||++|+|.|..|...+.+|||
T Consensus       116 ~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtl  173 (312)
T 4gcm_A          116 YKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTI  173 (312)
T ss_dssp             ECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             cCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            9999999987542    22222233335678999999999999999999999999987

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.74  E-value=1.9e-17  Score=155.82  Aligned_cols=193  Identities=23%  Similarity=0.417  Sum_probs=134.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.|.+.+|.|++...........+.....+++ 
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~--------~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~-  111 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF--------LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYW-  111 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTT-
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC--------CCCcccccCcCchHHHHHHHHHHHHHhhhhhcCc-
Confidence            3468999999999999999999999999999997542        5777888888887765554444333333333332 


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHH-----hcCCceEE-eceeEEeeCCeEEEEecCCCeEEEEcCeEEEcc
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVML-----RDKKVDYL-NALGKFIDQHSVEATMKNGEKKTLTAENILIAT  254 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~gV~~~-~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAt  254 (312)
                      ++......+..+.+...+......    ....+     ...+++++ .+.+..++.+.+.+  . |  ..+.||+||+||
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~--~-g--~~~~~d~lViAT  182 (523)
T 1mo9_A          112 FPDMTEKVVGIKEVVDLFRAGRNG----PHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA--A-G--KVFKAKNLILAV  182 (523)
T ss_dssp             CCCCTTCCCCHHHHHHHHHHHTHH----HHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE--T-T--EEEEBSCEEECC
T ss_pred             HHHHHhhhhhHHHHHHHHHhhhhh----hhhhhhhcccccCCcEEEEeeEEEEeeCCEEEE--C-C--EEEEeCEEEECC
Confidence            111001111233333333221110    00223     66789998 77777777665555  2 5  679999999999


Q ss_pred             CCCCCCCCCCCCCcc-eecccccc-CCCCCC-CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        255 GGRPNYPDIPGAKEH-CISSDDIF-SLEKPP-GKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       255 G~~p~~p~~~g~~~~-~~~~~~~~-~~~~~~-~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|..|+++|.+.. .+++.++. .+...+ ++++|||+|.+|+|.+..+...+.+|++
T Consensus       183 Gs~p~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtl  242 (523)
T 1mo9_A          183 GAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVM  242 (523)
T ss_dssp             CEECCCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            999999999998653 56777777 666677 8999999999999999999888888876

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.71  E-value=1.5e-17  Score=146.21  Aligned_cols=169  Identities=16%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+||+|+.+|..+.+.+.+++++|+...         |+.|.+ +|.++....              .  .++
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~---------gg~~~~-G~~~~~~~i--------------~--~~~   57 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA---------GGVAAG-GQLTTTTII--------------E--NFP   57 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG---------GGCCTT-CGGGGSSEE--------------C--CST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC---------CCcccC-CCcCChHHh--------------h--hcc
Confidence            48999999999999999999999999999997531         222222 222211000              0  000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe--eCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .. +..++...+...           +...+...++++........  +...+.+.+.++  .++.||+||+|||+.|+.
T Consensus        58 g~-~~~i~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           58 GF-PNGIDGNELMMN-----------MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEG--KEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             TC-TTCEEHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTC--CEEEEEEEEECCCEEECC
T ss_pred             CC-cccCCHHHHHHH-----------HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCC--eEEEEeEEEEcccccccc
Confidence            00 112233333222           22334556677665553322  233455556666  789999999999999999


Q ss_pred             CCCCCCCcce----eccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHC----ISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~----~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+.+.    .........  ...+++++|||+|++|+|.|..+...+.+||+
T Consensus       124 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~  180 (314)
T 4a5l_A          124 MHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVII  180 (314)
T ss_dssp             CCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             cCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeee
Confidence            9999986431    222222222  24578999999999999999999999999987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.69  E-value=4.9e-17  Score=152.80  Aligned_cols=166  Identities=28%  Similarity=0.419  Sum_probs=123.6

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      -.||+|+|.+|+++|.+|||++|+++|+.+|+++++.+.+.|+++||++++++.+.+++... +.+.+.+.++       
T Consensus       232 G~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~-~~~~v~~~~~-------  303 (542)
T 4b1b_A          232 SYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD-DKILVEFSDK-------  303 (542)
T ss_dssp             SHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET-TEEEEEETTS-------
T ss_pred             CHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecC-CeEEEEEcCC-------
Confidence            35999999999999999999999889999999999999999999999999999999998754 4456666554       


Q ss_pred             CccccccEEEEecCc----chHHHHHHHH--HCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGS----GGLAAAKEAA--AHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        99 ~~~~~~d~vivg~G~----~gl~~a~~~~--~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                       ..+.+|.|+++.|+    .++.+.....  .....++++|.+++|+.|+|||+||++...+    .+.+.+..+++.+.
T Consensus       304 -~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p----~La~~A~~eg~~aa  378 (542)
T 4b1b_A          304 -TSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVP----ELAPVAIKAGEILA  378 (542)
T ss_dssp             -CEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCC----CCHHHHHHHHHHHH
T ss_pred             -CeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCch----hHHHHHHHHHHHHH
Confidence             45679999999996    3333332221  2233467889999999999999999654443    35667777787777


Q ss_pred             HHHHcCCccCCccccccCHHHHHHHHHHHHH
Q psy11185        173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVK  203 (312)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (312)
                      .+. ++..     ...+++..+|..+|+.|+
T Consensus       379 ~~i-~g~~-----~~~~d~~~iP~~vft~Pe  403 (542)
T 4b1b_A          379 RRL-FKDS-----DEIMDYSYIPTSIYTPIE  403 (542)
T ss_dssp             HHH-HSCC-----CCCCCCSSCCEEECSSSC
T ss_pred             HHH-hcCC-----CcccCCCCCceEEeCCCC
Confidence            765 3311     223455555555555544

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.66  E-value=9.2e-16  Score=144.72  Aligned_cols=189  Identities=18%  Similarity=0.163  Sum_probs=112.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchh----hHHHHHHHHHHHHHHHHHc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK----KLMHQAALLGEAIKDAVAY  177 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~  177 (312)
                      ..+|+||||+|++|+.+|..|.+.+.+++++|+...        .|+.+. .++.|.    ...+...   ..+.....-
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~--------~GGtw~-~~~yPg~~~d~~~~~y~---~~f~~~~~~   75 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED--------VGGTWY-WNRYPGCRLDTESYAYG---YFALKGIIP   75 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--------SCTHHH-HCCCTTCBCSSCHHHHC---HHHHTTSST
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC--------CCCccc-cCCCCceeecCchhhcc---cccCccccc
Confidence            467999999999999999999999999999997542        222221 111110    0000000   000000000


Q ss_pred             CCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccC--
Q psy11185        178 GWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG--  255 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG--  255 (312)
                      .+.+   .....+...+..++....+.+..  ...+ ..+.++... ....+...+.+++.+|  .++.||+||+|||  
T Consensus        76 ~~~~---~~~~~~~~ei~~yl~~~~~~~~l--~~~i-~~~~~V~~~-~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG~~  146 (545)
T 3uox_A           76 EWEW---SENFASQPEMLRYVNRAADAMDV--RKHY-RFNTRVTAA-RYVENDRLWEVTLDNE--EVVTCRFLISATGPL  146 (545)
T ss_dssp             TCCC---SBSSCBHHHHHHHHHHHHHHHTC--GGGE-ECSCCEEEE-EEEGGGTEEEEEETTT--EEEEEEEEEECCCSC
T ss_pred             CCCc---cccCCCHHHHHHHHHHHHHHcCC--cCcE-EECCEEEEE-EEeCCCCEEEEEECCC--CEEEeCEEEECcCCC
Confidence            1111   12345566666665544433220  0000 011111111 1111235688888888  6899999999999  


Q ss_pred             CCCCCCCCCCCCcc---eecc-ccccC-------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        256 GRPNYPDIPGAKEH---CISS-DDIFS-------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~~~---~~~~-~~~~~-------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+.|++||.+.|   ..|+ .....       ....+|+|+|||+|.||+|.+..|...+++||+
T Consensus       147 s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv  213 (545)
T 3uox_A          147 SASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYV  213 (545)
T ss_dssp             BC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEE
T ss_pred             CCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEE
Confidence            78999999998764   2333 33333       455788999999999999999999998889886

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.64  E-value=9.3e-16  Score=134.37  Aligned_cols=164  Identities=18%  Similarity=0.172  Sum_probs=106.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      +.++|++|||+||+|+.+|..+.+.+.+++++|+...        .|-.+...+                       ++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~--------gg~~~~~~~-----------------------~~~   52 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN--------RNRVTQNSH-----------------------GFI   52 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC--------GGGGSSCBC-----------------------CST
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC--------CCeeeeecC-----------------------Ccc
Confidence            4468999999999999999999999999999997531        111111110                       110


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe---eCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI---DQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~---~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                        .  ...+....+....          .....+...+.+........   +...+++.+.+|  .++.||+||||||+.
T Consensus        53 --~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~  116 (304)
T 4fk1_A           53 --T--RDGIKPEEFKEIG----------LNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH--TKYLAERVLLATGMQ  116 (304)
T ss_dssp             --T--CTTBCHHHHHHHH----------HHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTC--CEEEEEEEEECCCCE
T ss_pred             --C--CCCCCHHHHHHHH----------HHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC--CEEEeCEEEEccCCc
Confidence              0  0112222222211          11112233456665554332   344577888888  789999999999999


Q ss_pred             CCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhh-HHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIG-KLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa-~~~a~~l~~~~~~V~~  311 (312)
                      |+.|++||.+.+    ..++.........+++++|||||.++ ++++..+...+++|++
T Consensus       117 p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i  175 (304)
T 4fk1_A          117 EEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVI  175 (304)
T ss_dssp             EECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEE
T ss_pred             cccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEE
Confidence            999999998653    23444444455567788888888765 5888888888888876

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.64  E-value=4.3e-15  Score=131.20  Aligned_cols=165  Identities=18%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.+......                    .  .+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~---------~gg~~~~~~~~--------------------~--~~   55 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM---------PGGQIAWSEEV--------------------E--NF   55 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTGGGGGCSCB--------------------C--CS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC---------CCccccccccc--------------------c--cC
Confidence            46899999999999999999999999999999852         23322221100                    0  00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC---e--EEEEecCCCeEEEEcCeEEEccCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH---S--VEATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~---~--~~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                      +.. +..++...+..+           +...+.+.++++....+..++..   .  +.+.+.+|  .++.||+||+|||+
T Consensus        56 ~~~-~~~~~~~~~~~~-----------l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~  121 (325)
T 2q7v_A           56 PGF-PEPIAGMELAQR-----------MHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGA  121 (325)
T ss_dssp             TTC-SSCBCHHHHHHH-----------HHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCE
T ss_pred             CCC-CCCCCHHHHHHH-----------HHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCC
Confidence            000 011223333222           22334566888876655444321   2  56666677  58999999999999


Q ss_pred             CCCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+.|+++|.+.+    .+...........+++|+|||+|.+|+|.|..|...+.+|++
T Consensus       122 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  180 (325)
T 2q7v_A          122 DPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTV  180 (325)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             CcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            9999999988643    122222222334578999999999999999999998888886

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.63  E-value=1.2e-15  Score=142.63  Aligned_cols=197  Identities=14%  Similarity=0.059  Sum_probs=111.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC--------------CcEEEEeccCCCCCC-cccc---------cCCcccccccchh
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG--------------RKVIVLDYVIPSPQG-TTWG---------LGGTCVNVGCIPK  158 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~--------------~~~~~ve~~~~~~~~-~v~a---------~Gd~~~~~~~~~~  158 (312)
                      -+|+||||+||+||++|..|.+.+              .....+|+...-.+. +...         .-|.++..+....
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~  118 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS  118 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence            479999999999999998886532              134566654432221 1111         1222111110000


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee-----CCeE
Q psy11185        159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID-----QHSV  233 (312)
Q Consensus       159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-----~~~~  233 (312)
                      -.+.........+....       .....++...++..|+..+++.+..    . -+.+-++..-.....+     ...|
T Consensus       119 ~sf~~yl~~~~rl~~f~-------~~~~~~p~r~E~~~Yl~~~A~~~~~----~-vrf~~~V~~v~~~~~~~~~~~~~~~  186 (501)
T 4b63_A          119 FTFLNYLHQKGRLIHFT-------NLSTFLPARLEFEDYMRWCAQQFSD----V-VAYGEEVVEVIPGKSDPSSSVVDFF  186 (501)
T ss_dssp             TSHHHHHHHHTCHHHHH-------TTCCSCCBHHHHHHHHHHHHHTTGG----G-EEESEEEEEEEEECSSTTSSCBCEE
T ss_pred             cchHHHHHHhCCccCCc-------cccCCCCCHHHHHHHHHHHHHHcCC----c-eEcceEEEeeccccccccccccceE
Confidence            01111111111111111       1124567788888888887765441    0 1112222211111111     1235


Q ss_pred             EEEe---cCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceeccccccC-------CCCCCCeEEEEcCchhhHHHHHHhh
Q psy11185        234 EATM---KNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS-------LEKPPGKTLVVGAGYIGKLETWDSN  303 (312)
Q Consensus       234 ~v~~---~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~~~-------~~~~~~~v~VvG~G~sa~~~a~~l~  303 (312)
                      +|+.   .+|+..++.|+.||+|||..|.+|..++.....+|+.++..       ....+|||+|||+|+||++++.+|.
T Consensus       187 ~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~  266 (501)
T 4b63_A          187 TVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQ  266 (501)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHH
T ss_pred             EEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHH
Confidence            5554   34566789999999999999998887766656667766543       3467889999999999999999886


Q ss_pred             cC--ceeeee
Q psy11185        304 SG--CGNVTI  311 (312)
Q Consensus       304 ~~--~~~V~~  311 (312)
                      ..  +.+|++
T Consensus       267 ~~~~~~~v~~  276 (501)
T 4b63_A          267 KRYPNSRTTL  276 (501)
T ss_dssp             HHSTTCEEEE
T ss_pred             hcCCCceEEE
Confidence            43  456664

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.63  E-value=8.3e-15  Score=138.03  Aligned_cols=183  Identities=18%  Similarity=0.226  Sum_probs=113.7

Q ss_pred             ccccEEEEecCcchHHHHHHHH-HCCCcEEEEeccCCCCCCcccccCCccccccc---chhhHHHHHHHHHHHHHHHHHc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAA-AHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC---IPKKLMHQAALLGEAIKDAVAY  177 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~-~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~  177 (312)
                      ..+|++|||+|++|+.+|..|. +.|.+++++|+....  .+.|...   ...++   .+........ . ..+.  ..+
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~--GGtw~~~---~ypg~~~d~~s~~~~~~~-~-~~~~--~~~   77 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGP--GGTWYWN---RYPGALSDTESHLYRFSF-D-RDLL--QES   77 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSS--CTHHHHC---CCTTCEEEEEGGGSSCCS-C-HHHH--HHC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCC--CCccccc---CCCCceecCCcceeeecc-c-cccc--cCC
Confidence            3579999999999999999999 888899999985421  1211110   00011   1111000000 0 0000  112


Q ss_pred             CCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCc--eEEec-eeEEe--e--CCeEEEEecCCCeEEEEcCeE
Q psy11185        178 GWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV--DYLNA-LGKFI--D--QHSVEATMKNGEKKTLTAENI  250 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~~-~~~~~--~--~~~~~v~~~~G~~~~i~ad~v  250 (312)
                      .+.     ....+...+..++....           .+.++  .+... .+..+  +  ...+++++.+|  .++.||+|
T Consensus        78 ~~~-----~~~~~~~ei~~~l~~~~-----------~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~l  139 (540)
T 3gwf_A           78 TWK-----TTYITQPEILEYLEDVV-----------DRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYV  139 (540)
T ss_dssp             CCS-----BSEEEHHHHHHHHHHHH-----------HHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEE
T ss_pred             CCc-----ccCCCHHHHHHHHHHHH-----------HHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEE
Confidence            221     23445555555544433           23333  23222 12222  2  24788888888  57899999


Q ss_pred             EEccC--CCCCCCCCCCCCcc---eec-cccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        251 LIATG--GRPNYPDIPGAKEH---CIS-SDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       251 VlAtG--~~p~~p~~~g~~~~---~~~-~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+|||  +.|+.|++||.+.|   ..| ..........+++|+|||+|.||+|.+..|...+++||+
T Consensus       140 V~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  206 (540)
T 3gwf_A          140 VNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTV  206 (540)
T ss_dssp             EECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             EECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            99999  68999999998764   233 344445556788999999999999999999999989986

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.63  E-value=6.1e-15  Score=128.16  Aligned_cols=160  Identities=15%  Similarity=0.203  Sum_probs=109.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+....+   -|..                              ....++
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~---~~~~------------------------------~~~~~~   48 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN---RFAS------------------------------HSHGFL   48 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG---GGCS------------------------------CCCSST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc---ccch------------------------------hhcCCc
Confidence            3699999999999999999999999999999743210   0000                              000000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      .  ....+...+..++           ...+... +++++...+..++  ...+.+++.+|  .++.||+||+|||+.|+
T Consensus        49 ~--~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           49 G--QDGKAPGEIIAEA-----------RRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG--RRETAGRLILAMGVTDE  113 (297)
T ss_dssp             T--CTTCCHHHHHHHH-----------HHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCCEEE
T ss_pred             C--CCCCCHHHHHHHH-----------HHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECCCCCCC
Confidence            0  1122333333332           2233443 7888777655544  34578888888  68999999999999999


Q ss_pred             CCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|...+    .+++.........+++++|||+|.+|++.+..|...+ +|++
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~  168 (297)
T 3fbs_A          114 LPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTF  168 (297)
T ss_dssp             CCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEE
T ss_pred             CCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEE
Confidence            9999998653    2333323333456789999999999999999998877 7775

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.63  E-value=7.6e-15  Score=135.47  Aligned_cols=194  Identities=18%  Similarity=0.129  Sum_probs=112.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccch---------------------hh
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIP---------------------KK  159 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~---------------------~~  159 (312)
                      .+|++|||+|++|+.+|..|.+.+.  +++++|+...  ..+.|....+.......|                     ..
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~--~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS--PGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS--SSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC--CCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence            5799999999999999999999998  9999997532  123333222100000000                     00


Q ss_pred             HHHH-HHHHHHHHHHHHHc-CCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEe--eCCeEE
Q psy11185        160 LMHQ-AALLGEAIKDAVAY-GWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFI--DQHSVE  234 (312)
Q Consensus       160 ~~~~-a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~--~~~~~~  234 (312)
                      .... ......   ....| ++.++......+.+..+..++..+.+.+           +..+... .+..+  +...+.
T Consensus        84 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------~~~i~~~t~V~~v~~~~~~~~  149 (447)
T 2gv8_A           84 LYRDLQTNTPI---ELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL-----------LPFIKLATDVLDIEKKDGSWV  149 (447)
T ss_dssp             CCTTCBCSSCH---HHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGG-----------GGGEECSEEEEEEEEETTEEE
T ss_pred             hhhhhccCCCH---HHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------hCeEEeCCEEEEEEeCCCeEE
Confidence            0000 000000   00011 1122221123445556666655544332           2222111 12222  234455


Q ss_pred             EEecC---CC-eEEEEcCeEEEccCC--CCCCCCCCCCCcc-------eeccccccCCC-CCCCeEEEEcCchhhHHHHH
Q psy11185        235 ATMKN---GE-KKTLTAENILIATGG--RPNYPDIPGAKEH-------CISSDDIFSLE-KPPGKTLVVGAGYIGKLETW  300 (312)
Q Consensus       235 v~~~~---G~-~~~i~ad~vVlAtG~--~p~~p~~~g~~~~-------~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~  300 (312)
                      ++..+   |+ ..++.||+||+|||+  .|+.|+++|.+.+       ..|+.++.... ..+++|+|||+|+||+|.|.
T Consensus       150 V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~  229 (447)
T 2gv8_A          150 VTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR  229 (447)
T ss_dssp             EEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHH
T ss_pred             EEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHH
Confidence            65544   64 347999999999997  7888999997542       45666655443 36788999999999999999


Q ss_pred             HhhcCcee-eeeC
Q psy11185        301 DSNSGCGN-VTIH  312 (312)
Q Consensus       301 ~l~~~~~~-V~~~  312 (312)
                      .|+..+++ |+++
T Consensus       230 ~l~~~~~~~V~l~  242 (447)
T 2gv8_A          230 HLTPVAKHPIYQS  242 (447)
T ss_dssp             HHTTTSCSSEEEE
T ss_pred             HHHHHhCCcEEEE
Confidence            99999888 8873

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.63  E-value=5.3e-16  Score=136.01  Aligned_cols=162  Identities=22%  Similarity=0.270  Sum_probs=108.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++++.          .|+.+......                     . .+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~----------~gG~~~~~~~~---------------------~-~~~   48 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER----------FGGQILDTVDI---------------------E-NYI   48 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS----------TTGGGGGCCEE---------------------C-CBT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC----------CCceecccccc---------------------c-ccc
Confidence            369999999999999999999999999888642          23322211000                     0 000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEeeC-----CeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFIDQ-----HSVEATMKNGEKKTLTAENILIATGG  256 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~~-----~~~~v~~~~G~~~~i~ad~vVlAtG~  256 (312)
                      .  ....+...+..+           +...+...++++..+ .+..++.     ..+.+++.+|  .++.||+||+|||+
T Consensus        49 ~--~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~  113 (310)
T 1fl2_A           49 S--VPKTEGQKLAGA-----------LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVATGA  113 (310)
T ss_dssp             T--BSSEEHHHHHHH-----------HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEECCCE
T ss_pred             C--cCCCCHHHHHHH-----------HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC--CEEEeCEEEECcCC
Confidence            0  011222222222           233456678898877 4555542     2577777777  67999999999999


Q ss_pred             CCCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|..|+++|.+.+    .+...........+++|+|||+|.+|+|.+..|...+.+|++
T Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  172 (310)
T 1fl2_A          114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL  172 (310)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEE
T ss_pred             CcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEE
Confidence            9988899988653    222222222234578999999999999999999998888886

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.62  E-value=5.9e-15  Score=129.37  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=108.9

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +|++|||+|++|+.+|..+.+.+. +++++|+..         .|+.+......                    .  .++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~---------~gg~~~~~~~~--------------------~--~~~   50 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM---------PGGQITGSSEI--------------------E--NYP   50 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS---------TTCGGGGCSCB--------------------C--CST
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC---------CCccccccccc--------------------c--cCC
Confidence            689999999999999999999999 999999741         23322221110                    0  000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .. +..++...+..++           ...+.+.++++....+..++  ...+.+++.+|  .++.||+||+|||+.|+.
T Consensus        51 ~~-~~~~~~~~~~~~l-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           51 GV-KEVVSGLDFMQPW-----------QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             TC-CSCBCHHHHHHHH-----------HHHHHTTSCEEECSCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCEEECC
T ss_pred             CC-cccCCHHHHHHHH-----------HHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCCC
Confidence            00 1123333333332           22345568888765544333  45567777777  579999999999999999


Q ss_pred             CCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|.+.+    .+...........+++|+|||+|.+|+|.|..|...+.+|++
T Consensus       117 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  171 (311)
T 2q0l_A          117 TGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYL  171 (311)
T ss_dssp             CCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEE
T ss_pred             CCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            999987532    222222222234568999999999999999999988888886

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.61  E-value=8.2e-15  Score=128.78  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=108.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+.    ..+.|......                          +  .++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~----~gg~~~~~~~~--------------------------~--~~~   62 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET----PGGQLTEAGIV--------------------------D--DYL   62 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS----TTGGGGGCCEE--------------------------C--CST
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc----CCCeecccccc--------------------------c--ccC
Confidence            589999999999999999999999999999974    11222111100                          0  000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .  ........+..+           +...+.+.++++....+..++  ...+.+++.+|  .++.||+||+|||+.|+.
T Consensus        63 ~--~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~  127 (323)
T 3f8d_A           63 G--LIEIQASDMIKV-----------FNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRK  127 (323)
T ss_dssp             T--STTEEHHHHHHH-----------HHHHHHTTTCCEEESCEEEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECC
T ss_pred             C--CCCCCHHHHHHH-----------HHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCcc
Confidence            0  001122222222           223455668888765555443  33577888777  689999999999999999


Q ss_pred             CCCCCCCcc---ee-ccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH---CI-SSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~---~~-~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|...+   .. ...........+++++|||+|.+|++.+..|...+.+|++
T Consensus       128 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~  182 (323)
T 3f8d_A          128 LGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYL  182 (323)
T ss_dssp             CCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            999998653   12 2222222334678999999999999999998888878876

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.60  E-value=1.3e-14  Score=134.41  Aligned_cols=80  Identities=15%  Similarity=0.190  Sum_probs=63.9

Q ss_pred             eEEEEecC---CCeEEEEcCeEEEccC--CCCCCCCCCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHh
Q psy11185        232 SVEATMKN---GEKKTLTAENILIATG--GRPNYPDIPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDS  302 (312)
Q Consensus       232 ~~~v~~~~---G~~~~i~ad~vVlAtG--~~p~~p~~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l  302 (312)
                      .|+++..+   |+..++.||+||+|||  +.|+.|++||.+.+   ..++.++.... ..+++|+|||+|.||+|.|..|
T Consensus       137 ~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l  216 (464)
T 2xve_A          137 TFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQC  216 (464)
T ss_dssp             EEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHH
T ss_pred             cEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHH
Confidence            45555433   5446799999999999  78999999998764   45666665543 4678999999999999999999


Q ss_pred             hcCceeeee
Q psy11185        303 NSGCGNVTI  311 (312)
Q Consensus       303 ~~~~~~V~~  311 (312)
                      +..+++|++
T Consensus       217 ~~~g~~V~l  225 (464)
T 2xve_A          217 YKYGAKKLI  225 (464)
T ss_dssp             HHTTCSEEE
T ss_pred             HHhCCeEEE
Confidence            999889886

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.60  E-value=5.5e-16  Score=140.26  Aligned_cols=159  Identities=21%  Similarity=0.320  Sum_probs=106.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ...++|||+|++|+.+|..+...+.+++++++.....    |   +    .+    .+.       ..+     .+. ..
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~----y---~----~~----~l~-------~~l-----~g~-~~   60 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP----Y---Y----RP----RLN-------EII-----AKN-KS   60 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC----B---C----GG----GHH-------HHH-----HSC-CC
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC----c---c----cC----hhh-------HHH-----cCC-CC
Confidence            4589999999999999999977777899998754211    0   0    00    000       000     010 00


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      . ......                  ....+.+.++++..++ +..++....++++.+|  .++.||+||+|||+.|+.|
T Consensus        61 ~-~~l~~~------------------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           61 I-DDILIK------------------KNDWYEKNNIKVITSEFATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             G-GGTBSS------------------CHHHHHHTTCEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCC
T ss_pred             H-HHccCC------------------CHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEecCCCcCCC
Confidence            0 000000                  1123456689988664 6666665556777888  6899999999999999999


Q ss_pred             CCCCCCcceec---cccccCCCC---CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHCIS---SDDIFSLEK---PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~---~~~~~~~~~---~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+ ..++   .++...+..   .+++|+|||+|.+|+|+|..|...+.+|++
T Consensus       120 ~i~G~~-~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtv  174 (385)
T 3klj_A          120 KVPHAD-EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASI  174 (385)
T ss_dssp             CCTTCS-CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCC-CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            999986 3333   333333322   268999999999999999999988888886

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.59  E-value=9.5e-15  Score=137.91  Aligned_cols=181  Identities=14%  Similarity=0.195  Sum_probs=113.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc---ccc---chhhHHHHHHHHHHHHHHH
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN---VGC---IPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~---~~~---~~~~~~~~a~~~~~~~~~~  174 (312)
                      ...+|+||||+|++|+.+|..|.+.+.+++++|+...        .|+.+..   .++   .+.........  ..+.  
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~--------~GGtw~~~~ypg~~~dv~s~~y~~~f~--~~~~--   86 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG--------VGGVWYWNRYPGARCDVESIDYSYSFS--PELE--   86 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--------SCTHHHHCCCTTCBCSSCTTTSSCCSC--HHHH--
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC--------CCCccccCCCCCceeCCCchhcccccc--cccc--
Confidence            3468999999999999999999999999999997542        2222210   011   11110000000  0000  


Q ss_pred             HHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCc--eEEec-eeEEe----eCCeEEEEecCCCeEEEEc
Q psy11185        175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV--DYLNA-LGKFI----DQHSVEATMKNGEKKTLTA  247 (312)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~~-~~~~~----~~~~~~v~~~~G~~~~i~a  247 (312)
                      ..+.+.     ....+...+..++....+.           .++  .+... .+..+    +...+++++.+|  .++.|
T Consensus        87 ~~~~~~-----~~~~~~~ei~~yl~~~~~~-----------~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~a  148 (549)
T 4ap3_A           87 QEWNWS-----EKYATQPEILAYLEHVADR-----------FDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSA  148 (549)
T ss_dssp             HHCCCS-----SSSCBHHHHHHHHHHHHHH-----------TTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEE
T ss_pred             cCCCCc-----cCCCCHHHHHHHHHHHHHH-----------cCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEe
Confidence            012211     2344555665555444332           232  22212 12221    224688888888  57999


Q ss_pred             CeEEEccC--CCCCCCCCCCCCcc---eecccccc--CCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        248 ENILIATG--GRPNYPDIPGAKEH---CISSDDIF--SLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       248 d~vVlAtG--~~p~~p~~~g~~~~---~~~~~~~~--~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+||+|||  +.|+.|++||.+.+   .+|+....  .....+++|+|||+|.||+|.+..|...+++||+
T Consensus       149 d~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  219 (549)
T 4ap3_A          149 RFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFV  219 (549)
T ss_dssp             EEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            99999999  78999999998765   34554433  4556788999999999999999999988888886

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.59  E-value=1.1e-14  Score=128.82  Aligned_cols=171  Identities=15%  Similarity=0.131  Sum_probs=111.3

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+|++|+.+|..|.+.+.+++++|+....    -+..|+.+......                    ..  
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~----~~~~gg~~~~~~~~--------------------~~--   73 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMAN----GIAAGGQLTTTTEI--------------------EN--   73 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT----TBCTTCGGGGSSEE--------------------CC--
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC----CCCcCcccccchhh--------------------cc--
Confidence            45689999999999999999999999999999985411    11233322111000                    00  


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEec---CCCeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMK---NGEKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~---~G~~~~i~ad~vVlAtG  255 (312)
                      ++.. +..+....+..+           +...+...++++..+++..++  .+.+.+.+.   ++  ..+.+|.||+|||
T Consensus        74 ~~~~-~~~~~~~~~~~~-----------~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~~d~vvlAtG  139 (338)
T 3itj_A           74 FPGF-PDGLTGSELMDR-----------MREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDA--EPVTTDAIILATG  139 (338)
T ss_dssp             STTC-TTCEEHHHHHHH-----------HHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSS--CCEEEEEEEECCC
T ss_pred             cCCC-cccCCHHHHHHH-----------HHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCC--cEEEeCEEEECcC
Confidence            0000 011222223222           233455668888777654443  345666653   44  6789999999999


Q ss_pred             CCCCCCCCCCCCcc----eeccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        256 GRPNYPDIPGAKEH----CISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~~~----~~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+.|+++|...+    ..+.......  ...+++++|||+|.+|++.+..|...+.+|++
T Consensus       140 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~  201 (338)
T 3itj_A          140 ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFM  201 (338)
T ss_dssp             EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            99999999997543    2222222222  34578899999999999999999998888886

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.58  E-value=3.5e-15  Score=140.29  Aligned_cols=163  Identities=22%  Similarity=0.267  Sum_probs=110.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++++.          .|+.+......+                      .+
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~----------~GG~~~~~~~~~----------------------~~  258 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER----------FGGQVLDTVDIE----------------------NY  258 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS----------TTGGGTTCSCBC----------------------CB
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC----------CCCccccccccc----------------------cc
Confidence            3689999999999999999999999999888752          233222111000                      00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEeeC-----CeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFIDQ-----HSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~~-----~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                      ..  ....+...+..+           +...+...+++++.+ .+..++.     ..+.+++.+|  ..+.||+||+|||
T Consensus       259 ~~--~~~~~~~~l~~~-----------l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG  323 (521)
T 1hyu_A          259 IS--VPKTEGQKLAGA-----------LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG--AVLKARSIIIATG  323 (521)
T ss_dssp             TT--BSSBCHHHHHHH-----------HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS--CEEEEEEEEECCC
T ss_pred             CC--CCCCCHHHHHHH-----------HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC--CEEEcCEEEECCC
Confidence            00  001222222222           234456778998877 4555542     2577888888  6899999999999


Q ss_pred             CCCCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        256 GRPNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       256 ~~p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+.|++||...+    ...+.........+++|+|||+|++|+|+|..|...+.+|++
T Consensus       324 ~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtl  383 (521)
T 1hyu_A          324 AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL  383 (521)
T ss_dssp             EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            99998999998654    122222222224578999999999999999999988888886

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.58  E-value=9.1e-14  Score=123.73  Aligned_cols=178  Identities=17%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+....  .+.|......... ..+...             ....++..+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~--gg~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~   66 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASP--GGAWQHAWHSLHL-FSPAGW-------------SSIPGWPMP   66 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSS--SGGGGGSCTTCBC-SSCGGG-------------SCCSSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC--CCcccCCCCCcEe-cCchhh-------------hhCCCCCCC
Confidence            479999999999999999999999999999975421  1111110000000 000000             000011111


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEE-EEecCCCeEEEEcCeEEEccC--C
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVE-ATMKNGEKKTLTAENILIATG--G  256 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~-v~~~~G~~~~i~ad~vVlAtG--~  256 (312)
                      ......+....+..++.           ..+...++++..++ +..+  +...+. +++.+|   ++.||+||+|||  +
T Consensus        67 ~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           67 ASQGPYPARAEVLAYLA-----------QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR---QWLARAVISATGTWG  132 (357)
T ss_dssp             CCSSSSCBHHHHHHHHH-----------HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC---EEEEEEEEECCCSGG
T ss_pred             CCccCCCCHHHHHHHHH-----------HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC---EEEeCEEEECCCCCC
Confidence            11122233334443332           33445577775543 3332  345677 888777   799999999999  4


Q ss_pred             CCCCCCCCCCCcc---eeccccccC-CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEH---CISSDDIFS-LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~---~~~~~~~~~-~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+.|+++|...+   ..++..+.. ....+++|+|||+|.+|+|.|..|...+ +|++
T Consensus       133 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~  190 (357)
T 4a9w_A          133 EAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTW  190 (357)
T ss_dssp             GBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEE
T ss_pred             CCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEE
Confidence            6777999998654   234433333 3345688999999999999999998887 4765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.58  E-value=1.5e-15  Score=139.70  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=111.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++.+.+.+.|+++||++++++++++++..     .+.+.++       
T Consensus       157 ~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~-----~v~~~~g-------  224 (437)
T 4eqs_A          157 YVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN-----EITFKSG-------  224 (437)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT-----EEEETTS-------
T ss_pred             cchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC-----eeeecCC-------
Confidence            5899999999999999999999 59999999999999999999999999999999988532     5777665       


Q ss_pred             CccccccEEEEecCcch-HHHH-HHHHHCCC-cEEEEeccCCCCCCcccccCCccccccc-----chhhHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAA-KEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC-----IPKKLMHQAALLGEA  170 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a-~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-----~~~~~~~~a~~~~~~  170 (312)
                       ..+++|.||++.|+.. .... ....+.+. ..+.+|++++|+.|+|||+||++.....     ......+.+..+++.
T Consensus       225 -~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~  303 (437)
T 4eqs_A          225 -KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASI  303 (437)
T ss_dssp             -CEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHH
T ss_pred             -eEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHH
Confidence             5789999999999522 1111 11112222 3588899999999999999997654321     122456777888888


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       304 ~a~ni  308 (437)
T 4eqs_A          304 VAEQI  308 (437)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88776

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=1.2e-14  Score=128.84  Aligned_cols=165  Identities=19%  Similarity=0.194  Sum_probs=107.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|...         .|+.+......                    .  .+
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~---------~gg~~~~~~~~--------------------~--~~   61 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS---------FGGALMTTTDV--------------------E--NY   61 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS---------CSCGGGSCSCB--------------------C--CS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC---------CCCceeccchh--------------------h--hc
Confidence            46899999999999999999999999999999531         22222111000                    0  00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC-CeEEE-EecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ-HSVEA-TMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~-~~~~v-~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      +.. +..++...+..++           ...+...++++..+++..++. ..+++ .+.+|  .++.||+||+|||+.|.
T Consensus        62 ~~~-~~~~~~~~~~~~l-----------~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           62 PGF-RNGITGPELMDEM-----------REQALRFGADLRMEDVESVSLHGPLKSVVTADG--QTHRARAVILAMGAAAR  127 (335)
T ss_dssp             TTC-TTCBCHHHHHHHH-----------HHHHHHTTCEEECCCEEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEEC
T ss_pred             CCC-CCCCCHHHHHHHH-----------HHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCcc
Confidence            000 0112233333222           223445688887766544442 33455 56667  67999999999999999


Q ss_pred             CCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|...+    .++..........+++|+|||+|.+|+|.+..|...+.+|++
T Consensus       128 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l  183 (335)
T 2a87_A          128 YLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTL  183 (335)
T ss_dssp             CCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEE
T ss_pred             CCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            9989886542    222222222224578999999999999999999988888886

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.56  E-value=6.1e-14  Score=122.82  Aligned_cols=164  Identities=18%  Similarity=0.213  Sum_probs=108.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEE-EeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIV-LDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~-ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .+|++|||+|++|+.+|..+.+.+.++++ +|+..         .|+.+......                     . .+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~---------~gG~~~~~~~~---------------------~-~~   52 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGM---------PGGQITSSSEI---------------------E-NY   52 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSS---------TTGGGGGCSCB---------------------C-CS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCC---------CCceeeeecee---------------------c-cC
Confidence            47999999999999999999999999888 98722         23322221100                     0 00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe-eC--CeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI-DQ--HSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~-~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      +. .+.......+..++           ...+...++++..+.+..+ +.  ..+.++..++.  ++.+|+||+|||+.|
T Consensus        53 ~~-~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~  118 (315)
T 3r9u_A           53 PG-VAQVMDGISFMAPW-----------SEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAP  118 (315)
T ss_dssp             TT-CCSCBCHHHHHHHH-----------HHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEE
T ss_pred             CC-CCCCCCHHHHHHHH-----------HHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCC
Confidence            00 01122333333332           2345667888877665444 33  44664333332  899999999999999


Q ss_pred             CCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+++|...+    .++..........+++++|||+|.+|++.+..|...+.+|++
T Consensus       119 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~  175 (315)
T 3r9u_A          119 KKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYL  175 (315)
T ss_dssp             CCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEE
T ss_pred             CCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            99999998653    223333333345678999999999999999999988888876

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.56  E-value=8e-14  Score=122.66  Aligned_cols=163  Identities=20%  Similarity=0.213  Sum_probs=106.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+..         .|+.+.......                      .+
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~---------~gg~~~~~~~~~----------------------~~   63 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV---------AGGLTAEAPLVE----------------------NY   63 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS---------TTGGGGGCSCBC----------------------CB
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC---------CCccccccchhh----------------------hc
Confidence            46899999999999999999999999999999732         233222211000                      00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      +.  ...++...+..+           +...+...++++.......++  ...+.+.+ ++  .++.||+||+|||+.|+
T Consensus        64 ~~--~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           64 LG--FKSIVGSELAKL-----------FADHAANYAKIREGVEVRSIKKTQGGFDIET-ND--DTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             TT--BSSBCHHHHHHH-----------HHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SS--SEEEEEEEEECCCEEEC
T ss_pred             CC--CcccCHHHHHHH-----------HHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CC--CEEEeCEEEECCCCCcc
Confidence            00  001122222222           223445668887665544333  44566666 44  47899999999999999


Q ss_pred             CCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|...+    .............+++++|||+|.+|+|.+..|...+.+|++
T Consensus       128 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~  183 (319)
T 3cty_A          128 HLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTI  183 (319)
T ss_dssp             CCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEE
T ss_pred             cCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEE
Confidence            9999887543    111222222234568999999999999999999988888876

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.55  E-value=6.6e-14  Score=123.84  Aligned_cols=169  Identities=15%  Similarity=0.104  Sum_probs=108.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+.....    +..|+.+......                    ..  .
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~----~~~gg~~~~~~~~--------------------~~--~   60 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND----IAPGGQLTTTTDV--------------------EN--F   60 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT----BCTTCGGGGCSEE--------------------CC--S
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccc----cCCCceeeecccc--------------------cc--C
Confidence            35799999999999999999999999999999732110    1122222111000                    00  0


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      +.. +..++...+..+           +...+...++++..+++..++  ...+++++ +|  .++.+|.||+|||++|.
T Consensus        61 ~~~-~~~~~~~~~~~~-----------l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           61 PGF-PEGILGVELTDK-----------FRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DS--KAILADAVILAIGAVAK  125 (333)
T ss_dssp             TTC-TTCEEHHHHHHH-----------HHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SS--EEEEEEEEEECCCEEEC
T ss_pred             CCC-ccCCCHHHHHHH-----------HHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CC--cEEEcCEEEECCCCCcC
Confidence            000 011222222222           223345668888776644443  34566766 66  68999999999999999


Q ss_pred             CCCCCCCCc----c----eeccccccCCC--CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKE----H----CISSDDIFSLE--KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~----~----~~~~~~~~~~~--~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|...    +    .++........  ..+++|+|||+|.+|+|.+..|...+.+|++
T Consensus       126 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~l  187 (333)
T 1vdc_A          126 RLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYI  187 (333)
T ss_dssp             CCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEE
Confidence            999998765    2    11222222222  4678999999999999999999988888886

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.55  E-value=1.2e-15  Score=137.17  Aligned_cols=158  Identities=21%  Similarity=0.302  Sum_probs=103.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...|++|||+|++|+.+|..+.+.+ +++++|+.....    |       ..+.    +..       .+     .+.  
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~----~-------~~~~----l~~-------~~-----~g~--   56 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY----Y-------SKPM----LSH-------YI-----AGF--   56 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC----C-------CSTT----HHH-------HH-----TTS--
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc----c-------ccch----hHH-------HH-----hCC--
Confidence            3579999999999999999999888 999999754211    0       0000    000       00     010  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                             .+++.+...           ....+...+++++.++ +..++...+.++ .+|  .++.||+||+|||+.|+.
T Consensus        57 -------~~~~~~~~~-----------~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g--~~~~~d~lViATGs~p~~  115 (367)
T 1xhc_A           57 -------IPRNRLFPY-----------SLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEK--GEVPYDTLVLATGARARE  115 (367)
T ss_dssp             -------SCGGGGCSS-----------CHHHHHHHTEEEECSCCEEEEETTTTEEE-ESS--CEEECSEEEECCCEEECC
T ss_pred             -------CCHHHhccC-----------CHHHHHhCCcEEEECCEEEEEECCCCEEE-ECC--cEEECCEEEECCCCCCCC
Confidence                   011110000           0112345688988775 666665555565 566  579999999999999999


Q ss_pred             CCCCCCCcceecc---ccccCCCC---CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISS---DDIFSLEK---PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~---~~~~~~~~---~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+ ..+++   .++..+..   .+++++|||+|.+|+|.|..|...+.+|++
T Consensus       116 p~i~G~~-~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  171 (367)
T 1xhc_A          116 PQIKGKE-YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKL  171 (367)
T ss_dssp             CCSBTGG-GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCcC-CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            9999843 33333   33332221   348999999999999999999988888886

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.54  E-value=6.9e-14  Score=129.53  Aligned_cols=189  Identities=15%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-----CcEEEEeccCCCCCC-cccccCCcccccc--------cchhhHHHHH---H
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-----RKVIVLDYVIPSPQG-TTWGLGGTCVNVG--------CIPKKLMHQA---A  165 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-----~~~~~ve~~~~~~~~-~v~a~Gd~~~~~~--------~~~~~~~~~a---~  165 (312)
                      .+|++|||+|++|+.+|..+.+.+     .+++++|+.....+. +.+..+- .....        ..|.......   .
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~p~~~~~~~~~l~  108 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQS-ELQISFLKDLVSLRNPTSPYSFVNYLH  108 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSC-BCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCC-cCCcchhhccccccCCCCCCChhHhhh
Confidence            579999999999999999999888     899999986643311 1111110 00000        0010000000   0


Q ss_pred             HHHHHHHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee-----C--CeEEEEe
Q psy11185        166 LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID-----Q--HSVEATM  237 (312)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~-----~--~~~~v~~  237 (312)
                      .... +.....+.       ...+....+..++.           ..+...++++..++ +..++     .  |.+++++
T Consensus       109 ~~~~-~~~~~~~~-------~~~~~~~~~~~~l~-----------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~  169 (463)
T 3s5w_A          109 KHDR-LVDFINLG-------TFYPCRMEFNDYLR-----------WVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVIS  169 (463)
T ss_dssp             HTTC-HHHHHHHC-------CSCCBHHHHHHHHH-----------HHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEE
T ss_pred             hcCc-eeeccccc-------CCCCCHHHHHHHHH-----------HHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEE
Confidence            0000 00000011       12223333333332           22334455554433 33222     1  2246665


Q ss_pred             cCC--CeEEEEcCeEEEccCCCCCCCC-CCCCCc--ceeccccccC-CCC------CCCeEEEEcCchhhHHHHHHhhcC
Q psy11185        238 KNG--EKKTLTAENILIATGGRPNYPD-IPGAKE--HCISSDDIFS-LEK------PPGKTLVVGAGYIGKLETWDSNSG  305 (312)
Q Consensus       238 ~~G--~~~~i~ad~vVlAtG~~p~~p~-~~g~~~--~~~~~~~~~~-~~~------~~~~v~VvG~G~sa~~~a~~l~~~  305 (312)
                      .+|  +..++.||+||+|||+.|.+|+ +++...  ...++..+.. ...      .+++|+|||+|.||+|++..|...
T Consensus       170 ~~g~g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~  249 (463)
T 3s5w_A          170 RNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDS  249 (463)
T ss_dssp             EETTSCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             ecCCCceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhc
Confidence            544  3448999999999999988877 333322  3344433322 222      467899999999999999998887


Q ss_pred             --ceeeee
Q psy11185        306 --CGNVTI  311 (312)
Q Consensus       306 --~~~V~~  311 (312)
                        +.+|++
T Consensus       250 ~~~~~Vt~  257 (463)
T 3s5w_A          250 YPSVQADM  257 (463)
T ss_dssp             CTTEEEEE
T ss_pred             CCCCeEEE
Confidence              778876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.54  E-value=4.2e-14  Score=124.34  Aligned_cols=163  Identities=18%  Similarity=0.193  Sum_probs=105.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|...         .|+.+......                    .  .++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~---------~gg~~~~~~~~--------------------~--~~~   53 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME---------KGGQLTTTTEV--------------------E--NWP   53 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS---------TTGGGGGCSBC--------------------C--CST
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC---------CCceEecchhh--------------------h--hCC
Confidence            5799999999999999999999999999999531         22222111000                    0  000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .. +..+....+..++           ...+...++++..+++..++  ...+++ ..+|  .++.||+||+|||+.|..
T Consensus        54 ~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~v-~~~~--~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           54 GD-PNDLTGPLLMERM-----------HEHATKFETEIIFDHINKVDLQNRPFRL-NGDN--GEYTCDALIIATGASARY  118 (320)
T ss_dssp             TC-CSSCBHHHHHHHH-----------HHHHHHTTCEEECCCEEEEECSSSSEEE-EESS--CEEEEEEEEECCCEEECC
T ss_pred             CC-CCCCCHHHHHHHH-----------HHHHHHCCCEEEEeeeeEEEecCCEEEE-EeCC--CEEEcCEEEECCCCCcCC
Confidence            00 0112223332222           23345568888777655444  334555 5566  579999999999999988


Q ss_pred             CCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+++|...+    .++..........+++|+|||+|.+|+|.+..|...+.+|++
T Consensus       119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtl  173 (320)
T 1trb_A          119 LGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHL  173 (320)
T ss_dssp             CCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            888886432    222222222224678999999999999999999998888886

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.54  E-value=2.3e-14  Score=133.55  Aligned_cols=149  Identities=39%  Similarity=0.605  Sum_probs=113.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+||+++++++|+.+++++.+.+.+.|+++||++++++.+.+++...++.+.+.+.++..+..   
T Consensus       197 ~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~---  273 (483)
T 3dgh_A          197 YIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEE---  273 (483)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCE---
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCce---
Confidence            58999999999999999999998889999999999999999999999999999999987555556777776532111   


Q ss_pred             ccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      ..+++|.||++.|...    +.+.....+.+...+.+|..++|+.|+|||+||++...+    ...+.+..++..+..+.
T Consensus       274 ~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----~~~~~A~~~g~~aa~~i  349 (483)
T 3dgh_A          274 SEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKP----ELTPVAVLAGRLLARRL  349 (483)
T ss_dssp             EEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTTCBCSSTTEEECSTTBTTSC----CCHHHHHHHHHHHHHHH
T ss_pred             eEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcCCccCCCCEEEEEcccCCCC----ccHHHHHHHHHHHHHHH
Confidence            3688999999999522    111111112222457788889999999999999754322    34456677777777765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.54  E-value=2e-14  Score=134.45  Aligned_cols=123  Identities=17%  Similarity=0.321  Sum_probs=97.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+|+++.+.+.+.|+++||++++++.+++++...++.+.+.+.++       
T Consensus       186 ~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g-------  258 (500)
T 1onf_A          186 YIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG-------  258 (500)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS-------
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCC-------
Confidence            5899999999999999999999 59999999999999999999999999999999999865444356666554       


Q ss_pred             Ccc-ccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185         99 THK-YDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus        99 ~~~-~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                       +. +++|.||++.|...    +.+.....+.....+.+|..++|+.|+|||+||++
T Consensus       259 -~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t~~~~iya~GD~~  314 (500)
T 1onf_A          259 -RIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC  314 (500)
T ss_dssp             -CEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTE
T ss_pred             -cEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCcccCCCCEEEEeccc
Confidence             34 89999999999532    21111111122234778888999999999999976

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.53  E-value=2.1e-14  Score=132.57  Aligned_cols=143  Identities=22%  Similarity=0.347  Sum_probs=110.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.++++.+.+.+.++       
T Consensus       177 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g-------  249 (450)
T 1ges_A          177 YIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG-------  249 (450)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS-------
T ss_pred             HHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCC-------
Confidence            5899999999999999999999 58899999999999999999999999999999999865444356666554       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|...    +.+.....+.+ ...+.+|..++|+.|+|||+||++...     ...+.+..+++.+..
T Consensus       250 -~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~  323 (450)
T 1ges_A          250 -RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV-----ELTPVAVAAGRRLSE  323 (450)
T ss_dssp             -CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC-----CCHHHHHHHHHHHHH
T ss_pred             -cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCCC-----ccHHHHHHHHHHHHH
Confidence             4689999999999521    21222222223 234778888899999999999965432     244566777777766


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       324 ~i  325 (450)
T 1ges_A          324 RL  325 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.53  E-value=1.6e-14  Score=134.59  Aligned_cols=145  Identities=18%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEee-ccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKN-VAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~-~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|+++||++++++.+.+++.+++ .+.+.+.+ ++.    
T Consensus       195 ~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~----  269 (482)
T 1ojt_A          195 IIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED-GVYVTFEGANAP----  269 (482)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT-EEEEEEESSSCC----
T ss_pred             HHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCC-eEEEEEeccCCC----
Confidence            5899999999999999999999 5999999999999999999999999999999999986433 35666654 110    


Q ss_pred             CCccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                       ..++++|.||++.|... ..   +.....+.+. ..+.+|.+++|+.|+|||+||++...     .+.+.+..+++.+.
T Consensus       270 -g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa  343 (482)
T 1ojt_A          270 -KEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP-----MLAHKAVHEGHVAA  343 (482)
T ss_dssp             -SSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS-----CCHHHHHHHHHHHH
T ss_pred             -ceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCC-----ccHHHHHHHHHHHH
Confidence             14678999999999522 11   1111122222 33778888999999999999965432     34556777788777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       344 ~~i  346 (482)
T 1ojt_A          344 ENC  346 (482)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.52  E-value=1.1e-13  Score=130.68  Aligned_cols=185  Identities=17%  Similarity=0.241  Sum_probs=111.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccccccc---chhhHHHHHHHHHHHHHHHHHcC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC---IPKKLMHQAALLGEAIKDAVAYG  178 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~  178 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+...  .++.|..+.   ..++   .+........ ....   ...+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~--~GG~w~~~~---~pg~~~d~~~~~~~~~f-~~~~---~~~~~   85 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD--VGGVWYWNR---YPGARCDIESIEYCYSF-SEEV---LQEWN   85 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--SCTHHHHCC---CTTCBCSSCTTTSSCCS-CHHH---HHHCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC--CCCcccccC---CCceeeccccccccccc-Chhh---hhccC
Confidence            368999999999999999999999999999997543  122221110   0000   0000000000 0000   01122


Q ss_pred             CccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe----eCCeEEEEecCCCeEEEEcCeEEEc
Q psy11185        179 WEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI----DQHSVEATMKNGEKKTLTAENILIA  253 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~----~~~~~~v~~~~G~~~~i~ad~vVlA  253 (312)
                      +.     ...++...+..++....+.+..         ++.+..++ +..+    +...+++++.+|  .++.||.||+|
T Consensus        86 ~~-----~~~~~~~~i~~yl~~~~~~~~l---------~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~vV~A  149 (542)
T 1w4x_A           86 WT-----ERYASQPEILRYINFVADKFDL---------RSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMA  149 (542)
T ss_dssp             CC-----BSSCBHHHHHHHHHHHHHHTTG---------GGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEEC
T ss_pred             cc-----cccCCHHHHHHHHHHHHHHcCC---------CceEEcCcEEEEEEEcCCCCeEEEEECCC--CEEEeCEEEEC
Confidence            11     2344555666655544333221         11221111 1111    124678888888  57999999999


Q ss_pred             cC--CCCCCCCCCCCCcc---eecccccc--CCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        254 TG--GRPNYPDIPGAKEH---CISSDDIF--SLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       254 tG--~~p~~p~~~g~~~~---~~~~~~~~--~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ||  +.|+.|+++|.+.+   .+|+....  .....+|+|+|||+|.||++.+..+...+.+|++
T Consensus       150 tG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv  214 (542)
T 1w4x_A          150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV  214 (542)
T ss_dssp             CCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             cCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEE
Confidence            99  57888999998654   24544443  2455788999999999999999998887878876

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.52  E-value=2.1e-14  Score=134.15  Aligned_cols=143  Identities=21%  Similarity=0.311  Sum_probs=110.3

Q ss_pred             hhhhhhhHhhhcc---CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~---g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      .+|+|+|..|+++   |.+|||+++ +++|+.+|+++.+.+.+.|+++||++++++.+++++.++++.+.+.+.++    
T Consensus       201 ~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G----  276 (495)
T 2wpf_A          201 FISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG----  276 (495)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS----
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCC----
Confidence            4899999999999   999999999 58999999999999999999999999999999999865444456766654    


Q ss_pred             cCCCccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                          ..+++|.||++.|...    +.+.......+ ...+.+|..++|+.|+|||+||++...     ...+.+..+++.
T Consensus       277 ----~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-----~l~~~A~~~g~~  347 (495)
T 2wpf_A          277 ----KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL-----MLTPVAINEGAA  347 (495)
T ss_dssp             ----CEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC-----CCHHHHHHHHHH
T ss_pred             ----cEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-----cCHHHHHHHHHH
Confidence                4689999999999521    21211112222 224778888999999999999965321     345667777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       348 aa~~i  352 (495)
T 2wpf_A          348 LVDTV  352 (495)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77765

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.52  E-value=2.9e-13  Score=119.76  Aligned_cols=167  Identities=20%  Similarity=0.240  Sum_probs=104.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+...  .|..                 .-+..+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--------~gg~~~~~--~~~~-----------------~~~~~~   57 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE--------PGGQLTAL--YPEK-----------------YIYDVA   57 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SCHHHHHT--CTTS-----------------EECCST
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC--------CCCeeecc--CCCc-----------------eeeccC
Confidence            57999999999999999999999999999997532        12211100  0000                 000000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEee--CCeEEEEecCCCeEEEEcCeEEEccCC---
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFID--QHSVEATMKNGEKKTLTAENILIATGG---  256 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~---  256 (312)
                      .  ...++...+..+           +...+...++++... .+..++  ...+.+++.+|  .++.||+||+|||+   
T Consensus        58 ~--~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~  122 (335)
T 2zbw_A           58 G--FPKVYAKDLVKG-----------LVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAF  122 (335)
T ss_dssp             T--CSSEEHHHHHHH-----------HHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEE
T ss_pred             C--CCCCCHHHHHHH-----------HHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCC
Confidence            0  011122222222           223344556777544 343332  23677877777  67999999999998   


Q ss_pred             CCCCCCCCCCCcceec-c-ccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEHCIS-S-DDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~~~~-~-~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|..|+++|.+.+... . ..+... ...+++|+|||+|.+|+|.+..|...+.+|++
T Consensus       123 ~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~  180 (335)
T 2zbw_A          123 EPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITL  180 (335)
T ss_dssp             EECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEE
T ss_pred             CCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            5777888887543210 0 001111 13578999999999999999999988888876

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.52  E-value=3.3e-14  Score=132.84  Aligned_cols=146  Identities=11%  Similarity=0.189  Sum_probs=103.9

Q ss_pred             hhhhhhhHhhhccC--------------CeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee
Q psy11185         20 DSGLECAGFLNGLG--------------FNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL   84 (312)
Q Consensus        20 ~ig~E~A~~l~~~g--------------~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~   84 (312)
                      .+|+|+|..|++++              .+|||+|+ +++|+.+++++++++.+.|+++||++++++.+++++.  ++ +
T Consensus       227 ~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~-~  303 (502)
T 4g6h_A          227 PTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQ-L  303 (502)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SE-E
T ss_pred             cchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeC--Cc-e
Confidence            47899999998765              58999999 6999999999999999999999999999999999853  22 2


Q ss_pred             EEEE--eeccccccCCCccccccEEEEecCcchHHHHHHH-H----H-CCCcEEEEeccCCC-CCCcccccCCccccccc
Q psy11185         85 KVQY--KNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA-A----A-HGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGC  155 (312)
Q Consensus        85 ~v~~--~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~----~-~~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~  155 (312)
                      .+..  .++..    ..+++++|.+||++|..+......+ .    . ...+.+.+|+.+++ +.|+|||+|||+.. +.
T Consensus       304 ~~~~~~~dg~~----~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~-~~  378 (502)
T 4g6h_A          304 LAKTKHEDGKI----TEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFA-GL  378 (502)
T ss_dssp             EEEEECTTSCE----EEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEES-SS
T ss_pred             EEEEEecCccc----ceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCC-CC
Confidence            2222  22211    0146899999999995332211111 1    1 12234777887776 78999999996543 22


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q psy11185        156 IPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~~  175 (312)
                        ++..+.+..++..+.++.
T Consensus       379 --p~~a~~A~qqg~~~A~ni  396 (502)
T 4g6h_A          379 --PPTAQVAHQEAEYLAKNF  396 (502)
T ss_dssp             --CCCHHHHHHHHHHHHHHH
T ss_pred             --CCchHHHHHHHHHHHHHH
Confidence              235566777777777764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.52  E-value=4.5e-14  Score=131.76  Aligned_cols=149  Identities=31%  Similarity=0.553  Sum_probs=112.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+||+++++++|+.+|+++.+.+.+.|+++||++++++.+.+++...++.+.+.+.+...++.   
T Consensus       195 ~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~---  271 (488)
T 3dgz_A          195 YVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKE---  271 (488)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEE---
T ss_pred             HHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCee---
Confidence            58999999999999999999998889999999999999999999999999999999987545546677765321111   


Q ss_pred             ccccccEEEEecCcc----hHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSG----GLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       100 ~~~~~d~vivg~G~~----gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      .++++|.||++.|..    .+.+.......+  ...+.+|..++|+.|+|||+||++...+    ...+.+..+++.+..
T Consensus       272 ~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----~~~~~A~~~g~~aa~  347 (488)
T 3dgz_A          272 DTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRP----ELTPTAIKAGKLLAQ  347 (488)
T ss_dssp             EEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCC----CCHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCC----cchhHHHHHHHHHHH
Confidence            247899999999952    221222122233  2347788889999999999999764333    344556777777777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       348 ~i  349 (488)
T 3dgz_A          348 RL  349 (488)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.51  E-value=4.4e-14  Score=130.99  Aligned_cols=144  Identities=18%  Similarity=0.202  Sum_probs=109.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.+.+. +.+.+. +++.    
T Consensus       181 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~~g~~----  255 (464)
T 2a8x_A          181 AIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ-VTVTVTKDGVA----  255 (464)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSC-EEEEEESSSCE----
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCe-EEEEEEcCCce----
Confidence            5899999999999999999999 59999999999999999999999999999999999864333 556664 3321    


Q ss_pred             CCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                        .++++|.||++.|...    +.+.......+. ..+.+|..++|+.|+|||+||++...     ...+.+..+++.+.
T Consensus       256 --~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa  328 (464)
T 2a8x_A          256 --QELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL-----QLAHVAEAQGVVAA  328 (464)
T ss_dssp             --EEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSS-----CSHHHHHHHHHHHH
T ss_pred             --EEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCc-----cCHHHHHHHHHHHH
Confidence              4679999999999521    112222222232 33778888999999999999965432     34456777777777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       329 ~~i  331 (464)
T 2a8x_A          329 ETI  331 (464)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.51  E-value=3e-14  Score=132.98  Aligned_cols=143  Identities=27%  Similarity=0.365  Sum_probs=110.7

Q ss_pred             hhhhhhhHhhhcc---CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~---g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      .+|+|+|..|+++   |.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+++++.++++.+.+.+.++    
T Consensus       197 ~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G----  272 (490)
T 1fec_A          197 YISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG----  272 (490)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS----
T ss_pred             HHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCC----
Confidence            4899999999999   999999999 58999999999999999999999999999999999865444456666554    


Q ss_pred             cCCCccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                          .++++|.||++.|...    +.+.....+.+ ...+.+|..++|+.|+|||+||++...     ...+.+..+++.
T Consensus       273 ----~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~-----~l~~~A~~~g~~  343 (490)
T 1fec_A          273 ----AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV-----MLTPVAINEGAA  343 (490)
T ss_dssp             ----CEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-----CCHHHHHHHHHH
T ss_pred             ----cEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-----cCHHHHHHHHHH
Confidence                4689999999999522    21121112222 234778888999999999999966321     355667777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       344 aa~~i  348 (490)
T 1fec_A          344 FVDTV  348 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.51  E-value=6.1e-14  Score=126.07  Aligned_cols=139  Identities=19%  Similarity=0.266  Sum_probs=105.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+ +++++.+++.+.|++.||++++++++++++.   .  .+.+.++       
T Consensus       153 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~--~v~~~~g-------  219 (367)
T 1xhc_A          153 FIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE---E--GVLTNSG-------  219 (367)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS---S--EEEETTE-------
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---e--EEEECCC-------
Confidence            4899999999999999999999 58888 9999999999999999999999999998862   2  4666544       


Q ss_pred             CccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                       + +++|.||++.|.. ...+...+ .+.+ +.+.+|..++|+.|+|||+||++...+. +....+.+..++..+..+.
T Consensus       220 -~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~-~~~~~~~A~~qg~~aa~~i  294 (367)
T 1xhc_A          220 -F-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI-IAGTAKAAMEQARVLADIL  294 (367)
T ss_dssp             -E-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB-CCCSHHHHHHHHHHHHHHH
T ss_pred             -E-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCC-CccHHHHHHHHHHHHHHHh
Confidence             4 7899999999952 22222211 2222 2377888899999999999997654321 1234556677777776665

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.50  E-value=5.7e-14  Score=129.70  Aligned_cols=160  Identities=20%  Similarity=0.282  Sum_probs=104.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .|++|||+|++|+.+|..+.+.  +.+++++|+.....       +..|.    .|..                 +.   
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~-------~~~~~----~p~~-----------------~~---   52 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS-------HAPCG----IPYV-----------------VE---   52 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc-------cCCcC----Cccc-----------------cC---
Confidence            5899999999999999999887  66899999754211       00000    0000                 00   


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHH-hcCCceEEec-eeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYLNA-LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~~~~~-~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                           ...+...+..           .....+ ...++++..+ .+..++...+.+.+.+| ..++.||+||+|||+.|+
T Consensus        53 -----~~~~~~~~~~-----------~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g-~~~~~~d~lviAtG~~p~  115 (449)
T 3kd9_A           53 -----GLSTPDKLMY-----------YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGG-EKSYEWDYLVFANGASPQ  115 (449)
T ss_dssp             -----------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSS-EEEEECSEEEECCCEEEC
T ss_pred             -----CCCCHHHhhh-----------cCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCc-eEEEEcCEEEECCCCCCC
Confidence                 0000000000           000112 4678998877 46667777777877665 357999999999999999


Q ss_pred             CCCCCCCCcc-ee---ccccccCC-----CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH-CI---SSDDIFSL-----EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~-~~---~~~~~~~~-----~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|.+.. .+   +..+...+     ...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       116 ~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  176 (449)
T 3kd9_A          116 VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTM  176 (449)
T ss_dssp             CCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            9999998542 22   22232222     12567999999999999999999888888886

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.50  E-value=1.3e-14  Score=132.41  Aligned_cols=158  Identities=20%  Similarity=0.326  Sum_probs=106.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..+|++|||+|++|+.+|..+.+.+.  +++++|+.....    |   +.+    ..+ ...         + ... .  
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~----~---~~~----~~~-~~~---------~-~~~-~--   60 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP----Y---DRP----PLS-KDF---------M-AHG-D--   60 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC----B---CSG----GGG-THH---------H-HHC-C--
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc----c---cCC----CCC-HHH---------h-CCC-c--
Confidence            35799999999999999999998877  499999753211    0   000    000 000         0 000 0  


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                        ..  ...                +.     .+.+.+++++.++ +..++....+++..+|  .++.||+||+|||+.|
T Consensus        61 --~~--~~~----------------~~-----~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           61 --AE--KIR----------------LD-----CKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAP  113 (408)
T ss_dssp             --GG--GSB----------------CC-----CTTSCSCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEE
T ss_pred             --hh--hhh----------------HH-----HHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCC
Confidence              00  000                00     2456789998876 6667655456666777  5899999999999999


Q ss_pred             CCCCC-CCCCcce---eccccccCCC---CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDI-PGAKEHC---ISSDDIFSLE---KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~-~g~~~~~---~~~~~~~~~~---~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|++ +|.+...   .+.+++..+.   ..+++|+|||+|.+|+|.|..|...+.+|++
T Consensus       114 ~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  173 (408)
T 2gqw_A          114 RALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSL  173 (408)
T ss_dssp             CCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            99998 9875222   3444443332   2478999999999999999999988888886

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.50  E-value=1.9e-13  Score=123.63  Aligned_cols=145  Identities=21%  Similarity=0.187  Sum_probs=107.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++++. +++++.+.+.+.+++.||++++++.+++++.++ +.+.+.+.++      
T Consensus       155 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~g------  227 (384)
T 2v3a_A          155 LIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EGLEAHLSDG------  227 (384)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TEEEEEETTS------
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CEEEEEECCC------
Confidence            4899999999999999999999 588877 489999999999999999999999999998643 3356666554      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                        ..+++|.||++.|.. ...+...+ ...+.. +.+|..++|+.|+|||+||++...+.. ......+..+++.+..+.
T Consensus       228 --~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~a~~~g~~~a~~i  303 (384)
T 2v3a_A          228 --EVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN-LLYVMPLMACARALAQTL  303 (384)
T ss_dssp             --CEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC-CCSHHHHHHHHHHHHHHH
T ss_pred             --CEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC-cchHHHHHHHHHHHHHHh
Confidence              568999999999952 22222211 222323 788888999999999999976432211 112334566677666654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.49  E-value=4.2e-13  Score=120.33  Aligned_cols=173  Identities=16%  Similarity=0.243  Sum_probs=103.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccc--cccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVN--VGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      .+|++|||+|++|+.+|..+.+.+. +++++|+..   ..+.|..-.....  .+...                ...++.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~---~Gg~~~~~~~~~~~~~~~~~----------------~~~~g~   64 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT---VGHSFKHWPKSTRTITPSFT----------------SNGFGM   64 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS---TTHHHHTSCTTCBCSSCCCC----------------CGGGTC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC---CCCccccCcccccccCcchh----------------cccCCc
Confidence            4799999999999999999999998 899999753   1111111000000  00000                000111


Q ss_pred             -ccCCcc----------ccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEecCCCeEEE
Q psy11185        180 -EIPNVK----------SVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATMKNGEKKTL  245 (312)
Q Consensus       180 -~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~~~G~~~~i  245 (312)
                       .+....          ...++...+..           .+...+...++++..++ +..++  ...+.+++.+|   ++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~  130 (369)
T 3d1c_A           65 PDMNAISMDTSPAFTFNEEHISGETYAE-----------YLQVVANHYELNIFENTVVTNISADDAYYTIATTTE---TY  130 (369)
T ss_dssp             CCTTCSSTTCCHHHHHCCSSCBHHHHHH-----------HHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---CE
T ss_pred             hhhhhccccccccccccccCCCHHHHHH-----------HHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC---EE
Confidence             000000          00111122222           22334456688887654 44343  23577777666   58


Q ss_pred             EcCeEEEccCCCCCCCCCCCCCcceeccccccCCCC-CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        246 TAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK-PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       246 ~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~-~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .||+||+|||+++. |.+|+  ....++..+..... ..++|+|||+|.+|+|.|..|...+.+|++
T Consensus       131 ~~d~vVlAtG~~~~-p~ip~--~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~l  194 (369)
T 3d1c_A          131 HADYIFVATGDYNF-PKKPF--KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIAL  194 (369)
T ss_dssp             EEEEEEECCCSTTS-BCCCS--SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EeCEEEECCCCCCc-cCCCC--CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEE
Confidence            89999999998765 55665  33445555544433 456899999999999999999888888886

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.49  E-value=7.9e-14  Score=129.27  Aligned_cols=144  Identities=18%  Similarity=0.200  Sum_probs=109.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-e--ccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-N--VAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~--~~~~~   95 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++.+++++..+ +.+.+.+. +  +.   
T Consensus       179 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~---  254 (464)
T 2eq6_A          179 AVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKK-DGLHVRLEPAEGGE---  254 (464)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEEEEEEEETTCCS---
T ss_pred             HHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CEEEEEEeecCCCc---
Confidence            5899999999999999999999 589999999999999999999999999999999998643 33556665 3  31   


Q ss_pred             cCCCccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                         ..++++|.||++.|..    .+.+.......+. ..+.+|..++|+.|+||++||++...     ...+.+..++..
T Consensus       255 ---~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~-----~l~~~A~~~g~~  326 (464)
T 2eq6_A          255 ---GEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP-----LLAHKAMREGLI  326 (464)
T ss_dssp             ---CEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSS-----CCHHHHHHHHHH
T ss_pred             ---eeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCc-----ccHHHHHHHHHH
Confidence               0268999999999952    1112222222222 34778888999999999999965432     345567777887


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       327 aa~~i  331 (464)
T 2eq6_A          327 AAENA  331 (464)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77765

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.49  E-value=2.1e-14  Score=131.03  Aligned_cols=159  Identities=23%  Similarity=0.313  Sum_probs=106.0

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCc--EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRK--VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~--~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .+++|||+|++|+.+|..+.+.+.+  ++++++......       +    .+..+..          .+     .+...
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y-------~----~~~l~~~----------~~-----~g~~~   56 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY-------D----RPSLSKA----------VL-----DGSLE   56 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB-------C----SGGGGTH----------HH-----HTSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc-------C----CccccHH----------Hh-----CCCCC
Confidence            3899999999999999999998876  888887542110       0    0000000          00     00000


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ..  .. ...                  ...+...++++..+ .+..++....++.+.+|  .++.||+||+|||+.|+.
T Consensus        57 ~~--~~-~~~------------------~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~  113 (410)
T 3ef6_A           57 RP--PI-LAE------------------ADWYGEARIDMLTGPEVTALDVQTRTISLDDG--TTLSADAIVIATGSRART  113 (410)
T ss_dssp             SC--CB-SSC------------------TTHHHHTTCEEEESCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECC
T ss_pred             HH--Hh-cCC------------------HHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEccCCcccC
Confidence            00  00 000                  01234568999887 56667766566777788  689999999999999999


Q ss_pred             CCCCCCCcc-ee---ccccccCC---CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH-CI---SSDDIFSL---EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~---~~~~~~~~---~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++||.+.. .+   +.++...+   ...+++++|||+|.+|+|.|..+...+.+|++
T Consensus       114 ~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtv  171 (410)
T 3ef6_A          114 MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI  171 (410)
T ss_dssp             CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            999987532 22   33333322   23578999999999999999999888888886

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.49  E-value=7.4e-14  Score=129.39  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=109.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.+.++ +.+.+.++       
T Consensus       176 ~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~G-------  247 (463)
T 2r9z_A          176 YIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQG-TTLVAQDG-------  247 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE-EEEEETTC-------
T ss_pred             HHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe-EEEEEeCC-------
Confidence            4899999999999999999999 58899999999999999999999999999999999864433 56666554       


Q ss_pred             Cc-cccccEEEEecCcc----hHHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         99 TH-KYDYDLLVLGGGSG----GLAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        99 ~~-~~~~d~vivg~G~~----gl~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                       . ++++|.||++.|..    .+.+.....+.+ ...+.+|..++|+.|+||++||++...     ...+.+..+++.+.
T Consensus       248 -~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~-----~~~~~A~~~g~~aa  321 (463)
T 2r9z_A          248 -TRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRD-----QLTPVAIAAGRRLA  321 (463)
T ss_dssp             -CEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSC-----CCHHHHHHHHHHHH
T ss_pred             -cEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCc-----ccHHHHHHHHHHHH
Confidence             4 68999999999952    122222222222 234778888899999999999965432     34456677777777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       322 ~~i  324 (463)
T 2r9z_A          322 ERL  324 (463)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.48  E-value=6.5e-14  Score=127.99  Aligned_cols=162  Identities=22%  Similarity=0.255  Sum_probs=107.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCc--EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRK--VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~--~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..+|+||||+|++|+.+|..+.+.+.+  ++++++........          .+ .+ +               ..+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~----------~~-l~-~---------------~~~~~   60 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYER----------PP-LS-K---------------EYLAR   60 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCS----------GG-GG-T---------------TTTTT
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCc----------cc-CC-H---------------HHHcC
Confidence            357999999999999999999998876  89998754211000          00 00 0               00000


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      .... ......                  ....+...++++..+ .+..++.....+.+.+|  ..+.||+||+|||+.|
T Consensus        61 ~~~~-~~~~~~------------------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~  119 (415)
T 3lxd_A           61 EKTF-ERICIR------------------PAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDP  119 (415)
T ss_dssp             SSCS-GGGBSS------------------CHHHHHHTTEEEEETCCEEEEETTTTEEEETTS--CEEEEEEEEECCCEEC
T ss_pred             CCCH-HHhccC------------------CHHHHHHCCcEEEeCCEEEEEECCCCEEEECCC--CEEEeeEEEEccCCcc
Confidence            0000 000000                  112345678998887 46667766666777788  6899999999999999


Q ss_pred             CCCCCCCCCcc-ee---ccccccCCC---CC-CCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH-CI---SSDDIFSLE---KP-PGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~-~~---~~~~~~~~~---~~-~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|+++|.+.. .+   +.+++..+.   .. +++++|||+|.+|+|.+..+...+.+|++
T Consensus       120 ~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtv  180 (415)
T 3lxd_A          120 RRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTL  180 (415)
T ss_dssp             CCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            99999987532 22   333333222   22 78999999999999999999888888886

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.48  E-value=1e-13  Score=128.60  Aligned_cols=145  Identities=15%  Similarity=0.168  Sum_probs=108.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHH-hccceEEEeeceeeEEEEcCCCeeEEEEe--eccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEM-AEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~   95 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.| ++.||++++++++++++.++++ +.+.+.  +++.  
T Consensus       184 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~--  260 (468)
T 2qae_A          184 VIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDS-VSLEVEGKNGKR--  260 (468)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSS-EEEEEECC---E--
T ss_pred             HHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe-EEEEEEcCCCce--
Confidence            5899999999999999999999 5999999999999999999 9999999999999999865433 556665  3311  


Q ss_pred             cCCCccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                          .++++|.||++.|... ..   +.....+.+. ..+.+|.+++|+.|+|||+||++...+    ...+.+..++..
T Consensus       261 ----~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----~~~~~A~~~g~~  332 (468)
T 2qae_A          261 ----ETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGP----MLAHKAEDEGVA  332 (468)
T ss_dssp             ----EEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSC----SCHHHHHHHHHH
T ss_pred             ----EEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCC----ccHhHHHHHHHH
Confidence                3679999999999521 11   2222222232 347788889999999999999665121    345567777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       333 aa~~i  337 (468)
T 2qae_A          333 CAEIL  337 (468)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.48  E-value=4.7e-13  Score=118.04  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=107.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+..  .+|..                 .-+..+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--------~gG~~~~--~~~~~-----------------~~~~~~   59 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ--------LGGQLSA--LYPEK-----------------YIYDVA   59 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--------SCHHHHH--HCTTS-----------------EECCST
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC--------CCceehh--cCCCc-----------------eEeccC
Confidence            57999999999999999999999999999997542        2221100  00000                 000011


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEeeC--C-eEEEEecCCCeEEEEcCeEEEccCC--
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFIDQ--H-SVEATMKNGEKKTLTAENILIATGG--  256 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~~--~-~~~v~~~~G~~~~i~ad~vVlAtG~--  256 (312)
                      .  ........+..+           +...+.+.++++... .+..++.  . .+.+++.+|   ++.+|+||+|||+  
T Consensus        60 ~--~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           60 G--FPKIRAQELINN-----------LKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE---THYSKTVIITAGNGA  123 (332)
T ss_dssp             T--CSSEEHHHHHHH-----------HHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE---EEEEEEEEECCTTSC
T ss_pred             C--CCCCCHHHHHHH-----------HHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC---EEEeCEEEECCCCCc
Confidence            1  001122222222           334455668888653 3444332  2 577888877   3999999999998  


Q ss_pred             -CCCCCCCCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 -RPNYPDIPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 -~p~~p~~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       .|+.|+++|...+   ..++ .+.... ..+++++|||+|.+|++.+..|...+.+|++
T Consensus       124 ~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~  182 (332)
T 3lzw_A          124 FKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSI  182 (332)
T ss_dssp             CEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEE
T ss_pred             CCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEE
Confidence             8888999998653   2333 222222 2478899999999999999999988888876

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.48  E-value=1.1e-13  Score=128.67  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=109.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+ .+++++.+.+.+.|++.||++++++.+++++.++++.+.+.+.+....   
T Consensus       188 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~---  264 (474)
T 1zmd_A          188 VIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGG---  264 (474)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSC---
T ss_pred             HHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCC---
Confidence            5899999999999999999999 58898 899999999999999999999999999999865433245554321000   


Q ss_pred             CCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                      ...++++|.||++.|...    +.+.....+.+. ..+.+|..++|+.|+|||+||++...     ...+.+..+++.+.
T Consensus       265 ~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa  339 (474)
T 1zmd_A          265 KAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP-----MLAHKAEDEGIICV  339 (474)
T ss_dssp             CCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHH
T ss_pred             CceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCC-----ccHHHHHHHHHHHH
Confidence            114689999999999521    112222222232 34778888999999999999965432     34556777788777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       340 ~~i  342 (474)
T 1zmd_A          340 EGM  342 (474)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.47  E-value=7e-14  Score=130.11  Aligned_cols=148  Identities=19%  Similarity=0.177  Sum_probs=107.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-CCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-ADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.. .++.+.+.+.+...+   
T Consensus       193 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g---  269 (478)
T 1v59_A          193 IIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTN---  269 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTT---
T ss_pred             HHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCC---
Confidence            4899999999999999999999 58999999999999999999999999999999999862 233355666521000   


Q ss_pred             CCccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                      ....+++|.||++.|...    +.+.....+.+ ...+.+|+.++|+.|+|||+||++...     ...+.+..++..+.
T Consensus       270 ~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa  344 (478)
T 1v59_A          270 KQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP-----MLAHKAEEEGIAAV  344 (478)
T ss_dssp             EEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHH
T ss_pred             CceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCc-----ccHHHHHHHHHHHH
Confidence            014689999999999521    11111112222 233777888999999999999965432     23455666666666


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       345 ~~i  347 (478)
T 1v59_A          345 EML  347 (478)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.47  E-value=1.5e-13  Score=129.33  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=109.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe---eEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK---LKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~---~~v~~~~~~~~~   95 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++.+++++..+++.   +.+.+.++    
T Consensus       224 ~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G----  299 (523)
T 1mo9_A          224 KTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG----  299 (523)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE----
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCC----
Confidence            4899999999999999999999 589999999999999999999999999999999998644442   34555444    


Q ss_pred             cCCCc-cccccEEEEecCcc-hHH-HHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         96 QDNTH-KYDYDLLVLGGGSG-GLA-AAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        96 ~~~~~-~~~~d~vivg~G~~-gl~-~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                          . ++++|.||+++|.. ... .+..+ .+.+. ..+.+|.+++|+.|+|||+||++...     ...+.+..++..
T Consensus       300 ----~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~  370 (523)
T 1mo9_A          300 ----EMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP-----MEMFKARKSGCY  370 (523)
T ss_dssp             ----EEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS-----CSHHHHHHHHHH
T ss_pred             ----cEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCc-----ccHHHHHHHHHH
Confidence                3 68999999999952 222 22222 22222 33778888999999999999965432     345567777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       371 aa~~i  375 (523)
T 1mo9_A          371 AARNV  375 (523)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77765

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.47  E-value=6.2e-14  Score=130.50  Aligned_cols=144  Identities=22%  Similarity=0.304  Sum_probs=108.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-eeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+++++..+++ .+.+.+.++.     
T Consensus       195 ~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~-----  269 (479)
T 2hqm_A          195 YIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK-----  269 (479)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC-----
T ss_pred             HHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc-----
Confidence            5899999999999999999999 58999999999999999999999999999999999864333 2466665441     


Q ss_pred             CCccccccEEEEecCcch---HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG---LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g---l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                        ..+++|.||++.|...   +.+.....+.+. ..+.+|..++|+.|+|||+||++.. +    ...+.+..+++.+..
T Consensus       270 --~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~-~----~~~~~A~~~g~~aa~  342 (479)
T 2hqm_A          270 --SIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGK-V----ELTPVAIAAGRKLSN  342 (479)
T ss_dssp             --EEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTS-S----CCHHHHHHHHHHHHH
T ss_pred             --EEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCCEEEEEecCCC-c----ccHHHHHHHHHHHHH
Confidence              3578999999999522   211111122222 3477788889999999999996432 2    245566777777776


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       343 ~i  344 (479)
T 2hqm_A          343 RL  344 (479)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.47  E-value=1.1e-12  Score=117.27  Aligned_cols=166  Identities=19%  Similarity=0.213  Sum_probs=103.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+...  .|..                 .-+..+
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--------~gg~~~~~--~~~~-----------------~~~~~~   66 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ--------LGGQLAAL--YPEK-----------------HIYDVA   66 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--------SCHHHHHT--CTTS-----------------EECCST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC--------CCCccccc--CCCc-----------------ccccCC
Confidence            58999999999999999999999999999997532        12211100  0000                 000000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee---CCeEEEEecCCCeEEEEcCeEEEccCC--
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID---QHSVEATMKNGEKKTLTAENILIATGG--  256 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG~--  256 (312)
                      .  ...++...+..+           +...+...++++.... +..++   ...+.+++.+|  .++.||+||+|||+  
T Consensus        67 ~--~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           67 G--FPEVPAIDLVES-----------LWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             T--CSSEEHHHHHHH-----------HHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCS
T ss_pred             C--CCCCCHHHHHHH-----------HHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCc
Confidence            0  001122222222           2233455677775443 43333   22577888777  67999999999998  


Q ss_pred             -CCCCCCCCC-CCcce---eccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 -RPNYPDIPG-AKEHC---ISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 -~p~~p~~~g-~~~~~---~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                       .|..|+++| .+.+.   .+.. +... ...+++|+|||+|.+|++.+..|...+.+|++
T Consensus       132 ~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~l  191 (360)
T 3ab1_A          132 FEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTL  191 (360)
T ss_dssp             CCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEE
T ss_pred             CCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence             566777888 54331   1110 1111 13578999999999999999999988888876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.47  E-value=6e-14  Score=128.84  Aligned_cols=161  Identities=18%  Similarity=0.267  Sum_probs=104.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .+|++|||+|++|+.+|..+.+.+.  +++++|+.....    |   +.+   + .+ +               ......
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~----~---~~~---~-l~-~---------------~~~~~~   56 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP----H---HLP---P-LS-K---------------AYLAGK   56 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC----B---CSG---G-GG-T---------------TTTTTC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC----C---cCC---C-Cc-H---------------HHhCCC
Confidence            4799999999999999999999887  689998643210    0   000   0 00 0               000000


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ... .....                  .....+...+++++.++ +..++....++++.+|  .++.||+||+|||+.|+
T Consensus        57 ~~~-~~~~~------------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~  115 (431)
T 1q1r_A           57 ATA-ESLYL------------------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPR  115 (431)
T ss_dssp             SCS-GGGBS------------------SCHHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             CCh-HHhcc------------------cCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEcCCCCcc
Confidence            000 00000                  01122345688887765 4555543345666677  57999999999999999


Q ss_pred             CCCCCCCCcc----e---eccccccCCC---CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH----C---ISSDDIFSLE---KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~----~---~~~~~~~~~~---~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+++|.+..    .   .+.+++..+.   ..+++|+|||+|.+|+|.|..|...+.+|++
T Consensus       116 ~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtl  177 (431)
T 1q1r_A          116 PLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTL  177 (431)
T ss_dssp             CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            9999987421    1   2334433321   3578999999999999999999988888886

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.47  E-value=3.8e-13  Score=122.60  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=106.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++|+ .+++++.+.+.+.|++.||++++++.+++++ +  +  .+.+.++      
T Consensus       155 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~--~v~~~~g------  223 (408)
T 2gqw_A          155 VIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G--VVLLDDG------  223 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T--EEEETTS------
T ss_pred             HHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C--EEEECCC------
Confidence            4799999999999999999999 58887 4899999999999999999999999999987 2  3  5666554      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccch-----hhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP-----KKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~-----~~~~~~a~~~~~~  170 (312)
                        .++++|.||++.|.. ...+...+ ...+. .+.+|.+++|+.|+|||+||++.......     ......+..+++.
T Consensus       224 --~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  300 (408)
T 2gqw_A          224 --TRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIA  300 (408)
T ss_dssp             --CEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHH
T ss_pred             --CEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHH
Confidence              568999999999953 22232222 22232 37888889999999999999765432110     1134556666776


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       301 aa~~i  305 (408)
T 2gqw_A          301 VARHL  305 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.47  E-value=3e-13  Score=124.93  Aligned_cols=161  Identities=19%  Similarity=0.242  Sum_probs=101.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .|++|||+|++|+.+|..+.+.  +.+++++|+.....    |..+.           ....             .....
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g----~~~~~-----------~~~~-------------~~~~~   54 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG----YLSGG-----------LSAY-------------FNHTI   54 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS----SCCC----------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc----ccCcc-----------chhh-------------hcCCC
Confidence            4899999999999999999887  77899999765321    00000           0000             00000


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFID--QHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      .       +..           .+.......+.+.++++... .+..++  ...+.++.. ++..++.||+||+|||+.|
T Consensus        55 ~-------~~~-----------~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~-~~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           55 N-------ELH-----------EARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRK-EEQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             ------------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEET-TEEEEEECSEEEECCCCCB
T ss_pred             C-------CHH-----------HhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEec-CceEEEEcCEEEECCCccc
Confidence            0       000           00000112334567877543 344444  345555422 2237899999999999999


Q ss_pred             CCCCCCCCCcc-eeccccccC------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH-CISSDDIFS------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~-~~~~~~~~~------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|+++|.+.. .+++.++..      ....+++++|||+|.+|+|.+..+...+.+|++
T Consensus       116 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  175 (452)
T 3oc4_A          116 FSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHV  175 (452)
T ss_dssp             CCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            99999998642 344433322      224678999999999999999999988888886

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.46  E-value=4.6e-13  Score=122.35  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=109.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++++ .+++++.+.+.+.+++.||++++++.+++++...+....+.+.++      
T Consensus       162 ~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG------  235 (415)
T 3lxd_A          162 YIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDG------  235 (415)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSS------
T ss_pred             HHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCC------
Confidence            4899999999999999999999 57776 479999999999999999999999999999864333236777665      


Q ss_pred             CCccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccch------hhHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP------KKLMHQAALLGE  169 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~------~~~~~~a~~~~~  169 (312)
                        ..+++|.||+++|... ..++..+ ...+ +.+.+|..++|+.|+||++||++.......      ....+.+..++.
T Consensus       236 --~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~  312 (415)
T 3lxd_A          236 --SVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMAT  312 (415)
T ss_dssp             --CEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHH
T ss_pred             --CEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHH
Confidence              5789999999999522 2222211 2222 348888889999999999999765543111      112456666777


Q ss_pred             HHHHHH
Q psy11185        170 AIKDAV  175 (312)
Q Consensus       170 ~~~~~~  175 (312)
                      .+..+.
T Consensus       313 ~aa~~i  318 (415)
T 3lxd_A          313 AAAKDI  318 (415)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.46  E-value=1.7e-13  Score=127.93  Aligned_cols=147  Identities=22%  Similarity=0.293  Sum_probs=111.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++++.+++..++ .+.+.+.+...+.   
T Consensus       208 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~-~~~v~~~~~~~g~---  283 (491)
T 3urh_A          208 VIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD-GAKVTFEPVKGGE---  283 (491)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-EEEEEEEETTSCC---
T ss_pred             HHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCC-EEEEEEEecCCCc---
Confidence            5899999999999999999999 5899999999999999999999999999999999987543 3566666421110   


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.||++.|..    .+.+.......+. ..+.+|..++|+.|+|||+||++...     ...+.+..+++.+..
T Consensus       284 ~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~  358 (491)
T 3urh_A          284 ATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP-----MLAHKAEDEGVAVAE  358 (491)
T ss_dssp             CEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCc-----cchhHHHHHHHHHHH
Confidence            1468899999999952    2212222233332 34778888999999999999965332     455667777777776


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       359 ~i  360 (491)
T 3urh_A          359 II  360 (491)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.46  E-value=1.5e-13  Score=129.18  Aligned_cols=149  Identities=28%  Similarity=0.452  Sum_probs=108.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC---CeeEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD---GKLKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~---~~~~v~~~~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+||+++++++|+.+|+++.+.+.+.|+++||++++++.+.+++...+   +.+.+.+...+..+.
T Consensus       220 ~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~  299 (519)
T 3qfa_A          220 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEI  299 (519)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCE
T ss_pred             HHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEE
Confidence            48999999999999999999998899999999999999999999999999988888775332   334555443221100


Q ss_pred             CCCccccccEEEEecCcc----hHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSG----GLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~----gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                         ..+++|.||++.|..    .+.+.....+.+  ...+.+|..++|+.|+|||+||++...+    ...+.+..+++.
T Consensus       300 ---~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~----~~~~~A~~~g~~  372 (519)
T 3qfa_A          300 ---IEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV----ELTPVAIQAGRL  372 (519)
T ss_dssp             ---EEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSC----CCHHHHHHHHHH
T ss_pred             ---EEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCC----ccHHHHHHHHHH
Confidence               246799999999952    221221112232  2347788889999999999999663322    345566777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       373 aa~~i  377 (519)
T 3qfa_A          373 LAQRL  377 (519)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.46  E-value=6.9e-13  Score=106.89  Aligned_cols=140  Identities=14%  Similarity=0.058  Sum_probs=99.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCC---------ccc-----hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPL---------RGF-----DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL   84 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l---------~~~-----~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~   84 (312)
                      .+|+|+|..|+++|.+|+|+|+ +.++         +++     ++++.+++.+.+++.||+++++ ++++++.++++ +
T Consensus        11 ~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~-~   88 (180)
T 2ywl_A           11 PSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGV-F   88 (180)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSS-E
T ss_pred             HHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCE-E
Confidence            5899999999999999999998 4555         234     6889999999999999999999 99999865443 4


Q ss_pred             EEEEeeccccccCCCccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHH
Q psy11185         85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA  164 (312)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a  164 (312)
                      .+.+.++         ++++|.||++.|...........+.+...+.+|..++|+.|+||++||++....    ...+.+
T Consensus        89 ~v~~~~g---------~i~ad~vI~A~G~~~~~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~----~~~~~A  155 (180)
T 2ywl_A           89 EVETEEG---------VEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP----GHAIIS  155 (180)
T ss_dssp             EEECSSC---------EEEEEEEEECCTTCCHHHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS----CCHHHH
T ss_pred             EEEECCC---------EEEECEEEECCCCCCCccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch----hhHHHH
Confidence            4544332         578999999999754221111112223357788889999999999999765432    133344


Q ss_pred             HHHHHHHHHH
Q psy11185        165 ALLGEAIKDA  174 (312)
Q Consensus       165 ~~~~~~~~~~  174 (312)
                      ..++..+..+
T Consensus       156 ~~~g~~aa~~  165 (180)
T 2ywl_A          156 AGDGAYVAVH  165 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhHHHHHHH
Confidence            4455544443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.46  E-value=1.3e-13  Score=125.53  Aligned_cols=160  Identities=18%  Similarity=0.248  Sum_probs=104.9

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .+++|||+|++|+.+|..|.+.+.  +++++|+........          .+ .+..                .+....
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~----------~~-l~~~----------------~l~~~~   54 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQR----------PP-LSKA----------------YLKSGG   54 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCS----------GG-GGTG----------------GGGSCC
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCC----------cc-CCHH----------------HHCCCC
Confidence            479999999999999999999887  799998754211100          00 0000                000000


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      .. ......                  ....+...++++....+..++.....+++.+|  ..+.||+||+|||+.|+.|
T Consensus        55 ~~-~~~~~~------------------~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~  113 (404)
T 3fg2_P           55 DP-NSLMFR------------------PEKFFQDQAIELISDRMVSIDREGRKLLLASG--TAIEYGHLVLATGARNRML  113 (404)
T ss_dssp             CT-TSSBSS------------------CHHHHHHTTEEEECCCEEEEETTTTEEEESSS--CEEECSEEEECCCEEECCC
T ss_pred             CH-HHccCC------------------CHHHHHhCCCEEEEEEEEEEECCCCEEEECCC--CEEECCEEEEeeCCCccCC
Confidence            00 000010                  11223456888877556666655556777788  6899999999999999999


Q ss_pred             CCCCCCcc-ee---ccccccCC---CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEH-CI---SSDDIFSL---EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~-~~---~~~~~~~~---~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||.+.. .+   +.++...+   ...+++++|||+|.+|+|++..+...+.+|++
T Consensus       114 ~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtv  170 (404)
T 3fg2_P          114 DVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDV  170 (404)
T ss_dssp             CSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            99987532 22   22332222   23578999999999999999999888888876

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.46  E-value=1.2e-13  Score=128.62  Aligned_cols=150  Identities=23%  Similarity=0.274  Sum_probs=110.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-eeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+++++...++ .+.+.+.+...+.. 
T Consensus       197 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~-  275 (478)
T 3dk9_A          197 YIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPV-  275 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCE-
T ss_pred             HHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcc-
Confidence            5899999999999999999999 68999999999999999999999999999999999875555 35566654211100 


Q ss_pred             CCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                      ....+++|.||++.|...    +.+.....+.+. ..+.+|..++|+.|+|||+||++.. +    ...+.+..+++.+.
T Consensus       276 ~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~-~----~~~~~A~~~g~~aa  350 (478)
T 3dk9_A          276 MTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGK-A----LLTPVAIAAGRKLA  350 (478)
T ss_dssp             EEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCS-S----CCHHHHHHHHHHHH
T ss_pred             cceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCC-C----ccHhHHHHHHHHHH
Confidence            003578999999999522    212221122222 3477888899999999999996522 2    34556677777776


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       351 ~~i  353 (478)
T 3dk9_A          351 HRL  353 (478)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.46  E-value=1.4e-13  Score=128.18  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=104.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .|++|||+|++|+.+|..+.+.  +.+++++|+.....       +..|.    .+    .       .    . .+ ..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~-------~~~~~----~~----~-------~----~-~~-~~   88 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS-------YAQCG----LP----Y-------V----I-SG-AI   88 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS-------BCGGG----HH----H-------H----H-TT-SS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC-------CCCCC----cc----h-------h----h-cC-Cc
Confidence            5999999999999999999875  77899999754211       11010    00    0       0    0 01 00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHH-hcCCceEEece-eEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYLNAL-GKFID--QHSVEATM-KNGEKKTLTAENILIATGG  256 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~~~~~~-~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~  256 (312)
                             .++..+..+           ....+ +..+++++.+. +..++  ...+.+.. .+|+..++.||+||+|||+
T Consensus        89 -------~~~~~l~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (480)
T 3cgb_A           89 -------ASTEKLIAR-----------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV  150 (480)
T ss_dssp             -------SCGGGGBSS-----------CHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             -------CCHHHhhhc-----------CHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC
Confidence                   011110000           00112 34588887654 44444  45666665 4574457999999999999


Q ss_pred             CCCCCCCCCCCcc-ee---ccccccCCC-----CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGAKEH-CI---SSDDIFSLE-----KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~~~~-~~---~~~~~~~~~-----~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|+.|+++|.+.. .+   ++++...+.     ..+++|+|||+|++|+|.|..+...+.+|++
T Consensus       151 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  214 (480)
T 3cgb_A          151 RPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRM  214 (480)
T ss_dssp             EECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            9999999988532 22   233333332     2688999999999999999999888888886

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.46  E-value=2.2e-13  Score=125.91  Aligned_cols=164  Identities=19%  Similarity=0.272  Sum_probs=104.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      +|++|||+|++|+.+|..+.+.  +.+++++|+.....            ..+|   ....           .. .+ ..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~------------~~~~---~~~~-----------~~-~g-~~   52 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS------------FLSC---GIAL-----------YL-GK-EI   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC------------BCGG---GHHH-----------HH-TT-CB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC------------cccc---cchh-----------hh-cC-Cc
Confidence            4899999999999999999887  88999999754211            0011   0000           00 00 00


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATM-KNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~~  257 (312)
                      .     ..++..+           .......+...++++..+. +..++  ...+.+.. .+|+..++.||+||+|||+.
T Consensus        53 ~-----~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~  116 (452)
T 2cdu_A           53 K-----NNDPRGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSK  116 (452)
T ss_dssp             G-----GGCGGGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             c-----cCCHHHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCC
Confidence            0     0011110           0001123445688886554 44444  45566654 23334789999999999999


Q ss_pred             CCCCCCCCCCcc-eeccc------cccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEH-CISSD------DIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~-~~~~~------~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+++|.+.. .+++.      .+......+++++|||+|.+|+|.|..+...+.+|++
T Consensus       117 p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  177 (452)
T 2cdu_A          117 PTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL  177 (452)
T ss_dssp             ECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             cCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEE
Confidence            999999988532 33322      2222334688999999999999999999988888886

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.45  E-value=1.2e-13  Score=128.23  Aligned_cols=169  Identities=24%  Similarity=0.313  Sum_probs=95.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      .|++|||+|++|+.+|..|.+.  +.+++++|+.....    |..   |    ..|.       .          ++..+
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~----~~~---~----gl~~-------~----------~~g~~   55 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS----YGG---C----GIPY-------Y----------VSGEV   55 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc----ccc---c----ccch-------h----------hcCCC
Confidence            5899999999999999999887  77899999754311    000   0    0000       0          00000


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFID--QHSVEATM-KNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~~  257 (312)
                             .+...+..+    +..+...........++++... .+..++  ...+.+.. .+|+...+.||+||+|||+.
T Consensus        56 -------~~~~~~~~~----~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           56 -------SNIESLQAT----PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -------CchHHhccc----cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCC
Confidence                   000000000    0000000111122457777543 344444  34555554 34655689999999999999


Q ss_pred             CCCCCCCCCCcc-ee---ccccccCCC-----CCCCeEEEEcCchhhHHHHHHhhcC-ceeeee
Q psy11185        258 PNYPDIPGAKEH-CI---SSDDIFSLE-----KPPGKTLVVGAGYIGKLETWDSNSG-CGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~-~~---~~~~~~~~~-----~~~~~v~VvG~G~sa~~~a~~l~~~-~~~V~~  311 (312)
                      |..|+++|.+.. .+   +..+...+.     ..+++++|||+|.+|+|.+..+... +.+|++
T Consensus       125 p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtl  188 (472)
T 3iwa_A          125 ANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV  188 (472)
T ss_dssp             ECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEE
T ss_pred             cCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEE
Confidence            999999998532 22   222222222     4578999999999999999998887 778876

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.45  E-value=7.3e-14  Score=130.67  Aligned_cols=142  Identities=21%  Similarity=0.200  Sum_probs=108.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+++++.++++ +.+.+.++       
T Consensus       192 ~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-v~v~~~~g-------  263 (499)
T 1xdi_A          192 VTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAG-VLVTMTDG-------  263 (499)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSS-EEEEETTS-------
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEECCC-------
Confidence            5899999999999999999999 58999999999999999999999999999999999865433 45554333       


Q ss_pred             CccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.||+++|... ..   +.....+.+. ..+.+|+.++|+.|+|||+||++...     ...+.+..+++.+..
T Consensus       264 -~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa~  337 (499)
T 1xdi_A          264 -RTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL-----PLASVAAMQGRIAMY  337 (499)
T ss_dssp             -CEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC-----SCHHHHHHHHHHHHH
T ss_pred             -cEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEEEeccCCCc-----ccHHHHHHHHHHHHH
Confidence             5689999999999522 11   1111122222 33678888999999999999965432     345567777887777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       338 ~i  339 (499)
T 1xdi_A          338 HA  339 (499)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.45  E-value=2.8e-13  Score=128.55  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=112.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEc------------------C
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL------------------A   80 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~------------------~   80 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++.+.+++..                  .
T Consensus       161 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~  240 (565)
T 3ntd_A          161 FIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI  240 (565)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCT
T ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccC
Confidence            4799999999999999999999 58999999999999999999999999999999999863                  2


Q ss_pred             CCeeEEEEeeccccccCCCccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCccccccc--
Q psy11185         81 DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC--  155 (312)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~--  155 (312)
                      ++.+.+.+.++        .++++|.||++.|... ..+...+ ...+. ..+.+|..++|+.|+|||+||++.....  
T Consensus       241 ~~~~~v~~~~g--------~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~  312 (565)
T 3ntd_A          241 KGHLSLTLSNG--------ELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVT  312 (565)
T ss_dssp             TCEEEEEETTS--------CEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTT
T ss_pred             CCcEEEEEcCC--------CEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccC
Confidence            34455666444        5789999999999522 2222221 22222 3477888899999999999997643221  


Q ss_pred             ---chhhHHHHHHHHHHHHHHHH
Q psy11185        156 ---IPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       156 ---~~~~~~~~a~~~~~~~~~~~  175 (312)
                         ......+.+..+++.+..+.
T Consensus       313 g~~~~~~~~~~A~~~g~~aa~~i  335 (565)
T 3ntd_A          313 GQACLVPLAGPANRQGRMAADNM  335 (565)
T ss_dssp             CCEECCCCHHHHHHHHHHHHHHH
T ss_pred             CceeecccHHHHHHHHHHHHHHh
Confidence               11235677888888887776

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.45  E-value=1.1e-13  Score=127.62  Aligned_cols=161  Identities=19%  Similarity=0.283  Sum_probs=102.7

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      |+||||+|++|+.+|..+.+.  +.+++++|+.....            ..+|   ....           .. .+ ...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~------------~~~~---~~~~-----------~~-~~-~~~   53 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS------------FLSA---GMQL-----------YL-EG-KVK   53 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS------------BCGG---GHHH-----------HH-TT-SSC
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC------------cccc---cchh-----------hh-cC-ccC
Confidence            799999999999999999887  77899999754211            0111   0000           00 01 000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEe-cCCCeEEEEcCeEEEccCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATM-KNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~-~~G~~~~i~ad~vVlAtG~~p  258 (312)
                             ++..+           .......+.+.++++..+. +..+  +...+.+.. .+|+..++.||+||+|||+.|
T Consensus        54 -------~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           54 -------DVNSV-----------RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             -------CGGGS-----------BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             -------CHHHh-----------hcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence                   00000           0001122345688886554 4334  345566654 456445699999999999999


Q ss_pred             CCCCCCCCCc-ceeccccc---cCC-----CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKE-HCISSDDI---FSL-----EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~-~~~~~~~~---~~~-----~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|++||.+. ..+++.++   ..+     ...+++++|||+|.+|+++|..+...+.+|++
T Consensus       116 ~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtl  177 (447)
T 1nhp_A          116 FELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTV  177 (447)
T ss_dssp             CCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            9999999853 23333322   111     12678999999999999999999888888886

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.45  E-value=3.6e-13  Score=125.06  Aligned_cols=147  Identities=17%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             hhhhhhhHhhhcc-CCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGL-GFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~-g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~   96 (312)
                      .+|+|+|..|+++ |.+||++++ +++++ .+++++.+.+.+.+++.||++++++.+.+++.. ++.+.+.+.++     
T Consensus       169 ~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~v~~~~g-----  242 (472)
T 3iwa_A          169 FIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARVITDK-----  242 (472)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEESS-----
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeEEEEEeCC-----
Confidence            4899999999999 999999999 58888 899999999999999999999999999999863 34456777655     


Q ss_pred             CCCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLG  168 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~  168 (312)
                         .++++|.||++.|.. ...++..+ .+.+. ..+.+|..++|+.|+||++||++......     .....+.+..++
T Consensus       243 ---~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g  319 (472)
T 3iwa_A          243 ---RTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQG  319 (472)
T ss_dssp             ---CEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHH
T ss_pred             ---CEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHH
Confidence               568999999999963 22222222 22222 35788888999999999999976432211     123455677777


Q ss_pred             HHHHHHH
Q psy11185        169 EAIKDAV  175 (312)
Q Consensus       169 ~~~~~~~  175 (312)
                      ..+..+.
T Consensus       320 ~~aa~~i  326 (472)
T 3iwa_A          320 RVIGTNL  326 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.45  E-value=1.3e-13  Score=127.42  Aligned_cols=145  Identities=21%  Similarity=0.304  Sum_probs=108.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++++++++.+++ .+.+.+.+.+.     
T Consensus       180 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~~g~-----  253 (455)
T 1ebd_A          180 YIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEERED-GVTVTYEANGE-----  253 (455)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-EEEEEEEETTE-----
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-eEEEEEEeCCc-----
Confidence            5899999999999999999999 5899999999999999999999999999999999986433 35555542111     


Q ss_pred             CccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..++++|.||++.|... ..   +.....+.+. ..+.+|..++|+.|+||++||++...     ...+.+..++..+..
T Consensus       254 ~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~-----~~~~~A~~~g~~aa~  328 (455)
T 1ebd_A          254 TKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP-----ALAHKASYEGKVAAE  328 (455)
T ss_dssp             EEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHHH
T ss_pred             eeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCc-----ccHHHHHHHHHHHHH
Confidence            14689999999999522 11   1111112222 34778888999999999999965432     244566777777776


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       329 ~i  330 (455)
T 1ebd_A          329 AI  330 (455)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.45  E-value=2.7e-13  Score=123.68  Aligned_cols=146  Identities=14%  Similarity=0.083  Sum_probs=109.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++++ .+++++.+.+.+.+++.||++++++.+++++.++ ....+.+.++      
T Consensus       153 ~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~v~~~dg------  225 (410)
T 3ef6_A          153 LIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEG-QLEQVMASDG------  225 (410)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSS-SCCEEEETTS------
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccC-cEEEEEECCC------
Confidence            5899999999999999999999 57775 4899999999999999999999999999997533 3236777665      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc----hhhHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI----PKKLMHQAALLGEAI  171 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~----~~~~~~~a~~~~~~~  171 (312)
                        +.+++|.||++.|.. ...++..+ .+.+ +.+.+|..++|+.|+||++||++......    .....+.+..++..+
T Consensus       226 --~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~a  302 (410)
T 3ef6_A          226 --RSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAV  302 (410)
T ss_dssp             --CEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHH
T ss_pred             --CEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHH
Confidence              578999999999952 22222221 2222 34888988999999999999976543211    112245666777777


Q ss_pred             HHHH
Q psy11185        172 KDAV  175 (312)
Q Consensus       172 ~~~~  175 (312)
                      ..+.
T Consensus       303 a~~i  306 (410)
T 3ef6_A          303 AAAI  306 (410)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.44  E-value=1.4e-13  Score=127.16  Aligned_cols=147  Identities=15%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++|+ .+++++.+.+.+.|++.||++++++.+++++.. ++.+.....++      
T Consensus       159 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~~g------  231 (452)
T 2cdu_A          159 YIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTLDG------  231 (452)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEETTS------
T ss_pred             HHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEeCC------
Confidence            5899999999999999999999 58888 799999999999999999999999999999753 33332222233      


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~~  170 (312)
                        .++++|.||++.|... ..+...+...+. ..+.+|.+++|+.|+|||+||++......     .....+.+..++..
T Consensus       232 --~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  309 (452)
T 2cdu_A          232 --KEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRL  309 (452)
T ss_dssp             --CEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHH
T ss_pred             --CEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHH
Confidence              4689999999999521 111111122222 34778888999999999999976543211     12356777888888


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       310 aa~~i  314 (452)
T 2cdu_A          310 VGLNL  314 (452)
T ss_dssp             HHHTS
T ss_pred             HHHHh
Confidence            87765

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.44  E-value=1.4e-13  Score=127.57  Aligned_cols=142  Identities=22%  Similarity=0.240  Sum_probs=109.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE-EeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ-YKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~-~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+.+++..+++.+.+. +.++      
T Consensus       180 ~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g------  253 (463)
T 4dna_A          180 YIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG------  253 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC------
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC------
Confidence            5799999999999999999999 5889999999999999999999999999999999987555534565 5444      


Q ss_pred             CCccccccEEEEecCcchH-H---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGGL-A---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~gl-~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                        + +++|.||++.|.... .   +.....+.+. ..+.+|..++|+.|+||++||++..     ....+.+..+++.+.
T Consensus       254 --~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa  325 (463)
T 4dna_A          254 --E-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDR-----VQLTPVAIHEAMCFI  325 (463)
T ss_dssp             --E-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSS-----CCCHHHHHHHHHHHH
T ss_pred             --e-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCC-----CCChHHHHHHHHHHH
Confidence              4 889999999996221 1   1111122222 3477888899999999999996542     234566777777777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       326 ~~i  328 (463)
T 4dna_A          326 ETE  328 (463)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.44  E-value=5.4e-13  Score=122.49  Aligned_cols=147  Identities=15%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEc-CCCee-EEEEeeccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-ADGKL-KVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~~~~-~v~~~~~~~~~   95 (312)
                      .+|+|+|..|+++|.+||++++ +++|+. +++++.+.+.+.+++.||++++++.+.+++.. .++.+ .+.+.++    
T Consensus       159 ~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G----  234 (431)
T 1q1r_A          159 YIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG----  234 (431)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS----
T ss_pred             HHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCC----
Confidence            4799999999999999999999 577775 89999999999999999999999999999751 22323 5666554    


Q ss_pred             cCCCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLG  168 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~  168 (312)
                          ..+++|.||++.|.. ...++..+ ...+ +.+.+|..++|+.|+||++||++......     .......+..++
T Consensus       235 ----~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg  309 (431)
T 1q1r_A          235 ----TRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQA  309 (431)
T ss_dssp             ----CEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHH
T ss_pred             ----CEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHH
Confidence                568999999999952 22322221 1222 23788888999999999999976543211     011345566677


Q ss_pred             HHHHHHH
Q psy11185        169 EAIKDAV  175 (312)
Q Consensus       169 ~~~~~~~  175 (312)
                      +.+..+.
T Consensus       310 ~~aa~~i  316 (431)
T 1q1r_A          310 RKIAAIL  316 (431)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766655

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.43  E-value=9.7e-14  Score=128.86  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=108.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+.+++.++++ +.+.+.+...+   .
T Consensus       187 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~~~~g---~  262 (470)
T 1dxl_A          187 YIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-VKLTVEPSAGG---E  262 (470)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS-EEEEEEESSSC---C
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCe-EEEEEEecCCC---c
Confidence            5899999999999999999999 58999999999999999999999999999999999864333 55666521000   0


Q ss_pred             CccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ...+++|.||++.|... ..   +.....+.+. ..+.+|.+++|+.|+|||+||++...     ...+.+..+++.+..
T Consensus       263 ~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~-----~~~~~A~~~g~~aa~  337 (470)
T 1dxl_A          263 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP-----MLAHKAEEDGVACVE  337 (470)
T ss_dssp             CEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC-----CCHHHHHHHHHHHHH
T ss_pred             ceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCC-----ccHHHHHHHHHHHHH
Confidence            14689999999999522 11   1111122222 34778888999999999999965432     345567777777777


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       338 ~i  339 (470)
T 1dxl_A          338 YL  339 (470)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.43  E-value=4.9e-14  Score=127.46  Aligned_cols=159  Identities=16%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCccccc-ccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNV-GCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      .+|++|||+|++|+.+|..+.+.+.  +++++|...          |  |... +.++.                 .+. 
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~----------g--~~~~~~~l~~-----------------~~~-   53 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD----------G--RSYSKPMLST-----------------GFS-   53 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC----------C--CEECGGGGGG-----------------TTT-
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC----------C--CccCcccccH-----------------HHh-
Confidence            4799999999999999999998874  578888642          1  1110 00000                 000 


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                             .......+.          .......+...+++++.+. +..++....+++..+   .++.||+||+|||+.|
T Consensus        54 -------~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           54 -------KNKDADGLA----------MAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE---EEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             -------TTCCHHHHE----------EECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT---EEEECSEEEECCCEEE
T ss_pred             -------CCCCHHHhh----------ccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC---cEEECCEEEEeCCCCc
Confidence                   000111110          0011122355688887543 444443223344443   3699999999999999


Q ss_pred             CCCCCCCCC-cceeccccccCC------CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAK-EHCISSDDIFSL------EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~-~~~~~~~~~~~~------~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..|+++|.+ ...+++.++...      -..+++++|||+|.+|+|.|..+...+.+|++
T Consensus       114 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  173 (384)
T 2v3a_A          114 IRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDV  173 (384)
T ss_dssp             CCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            999999875 334444444322      12478999999999999999999988888886

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.43  E-value=2.3e-13  Score=126.99  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=108.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+|||+++ +++|+ .+++++.+.+.+.|++.||++++++.+++++.  ++.+ .+.+ ++     
T Consensus       204 ~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~-~g-----  275 (490)
T 2bc0_A          204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIIT-DK-----  275 (490)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEE-SS-----
T ss_pred             HHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEE-CC-----
Confidence            4899999999999999999999 58888 79999999999999999999999999999975  2323 3444 33     


Q ss_pred             CCCccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCccccccc-----chhhHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC-----IPKKLMHQAALLGE  169 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-----~~~~~~~~a~~~~~  169 (312)
                         .++++|.||++.|... ..+...+...+. ..+.+|..++|+.|+|||+||++.....     ......+.+..+++
T Consensus       276 ---~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~  352 (490)
T 2bc0_A          276 ---NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGI  352 (490)
T ss_dssp             ---CEEECSEEEECCCEEECCGGGTTCSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHH
T ss_pred             ---cEEECCEEEECCCCCcChHHHHhhhccCCCCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHH
Confidence               4689999999999521 111111122222 3477888899999999999997654221     11235667788888


Q ss_pred             HHHHHH
Q psy11185        170 AIKDAV  175 (312)
Q Consensus       170 ~~~~~~  175 (312)
                      .+..+.
T Consensus       353 ~aa~~i  358 (490)
T 2bc0_A          353 VAAHNA  358 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.43  E-value=9.3e-13  Score=119.88  Aligned_cols=147  Identities=14%  Similarity=0.138  Sum_probs=108.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|.++|.+||++++ +++++ .+++++.+.+.+.+++.||++++++.+++++...+....+.+.++      
T Consensus       152 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG------  225 (404)
T 3fg2_P          152 FIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG------  225 (404)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTS------
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCC------
Confidence            4799999999999999999999 57776 489999999999999999999999999999864333235667665      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~~  170 (312)
                        +++++|.||+++|.. ...++..+ ...+ +.+.+|..++|+.|+||++||++......     .....+.+..++..
T Consensus       226 --~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~  302 (404)
T 3fg2_P          226 --NTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC  302 (404)
T ss_dssp             --CEEECSEEEECCCEEECCHHHHHTTCCBS-SSEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred             --CEEEcCEEEECcCCccCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence              578999999999952 22222221 2222 23888888999999999999976543211     11124566677777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       303 aa~~i  307 (404)
T 3fg2_P          303 VAARL  307 (404)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.42  E-value=2.6e-13  Score=128.82  Aligned_cols=162  Identities=22%  Similarity=0.270  Sum_probs=101.1

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +++|||+|++|+.+|..|.+.  +.+++++|+.....    |.        .+   ....           .. .+ ...
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~----~~--------~~---~l~~-----------~~-~~-~~~   54 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS----FA--------NC---GLPY-----------HI-SG-EIA   54 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS----BC--------GG---GHHH-----------HH-TS-SSC
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc----cc--------cc---CchH-----------Hh-cC-CcC
Confidence            799999999999999999887  66899999754321    00        00   0000           00 11 000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFID--QHSVEATM-KNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      ........+                 ......+.++++... .+..++  ...+.+.. .+|+..++.||+||+|||+.|
T Consensus        55 ~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  117 (565)
T 3ntd_A           55 QRSALVLQT-----------------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAP  117 (565)
T ss_dssp             CGGGGBCCC-----------------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             ChHHhhccC-----------------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCC
Confidence            000000100                 011122347777543 344444  34566554 346556899999999999999


Q ss_pred             CCCCCCCCCcc-eecccccc---CC-----CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH-CISSDDIF---SL-----EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~-~~~~~~~~---~~-----~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.|++||.+.. .++...+.   .+     ...+++|+|||+|.+|+|.|..+...+.+|++
T Consensus       118 ~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  179 (565)
T 3ntd_A          118 IVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL  179 (565)
T ss_dssp             CCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence            99999998543 33333222   11     24678999999999999999999888888886

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.42  E-value=2.5e-13  Score=126.26  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=109.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++.+++++..++ .+.+.+.+++..    
T Consensus       190 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~-~~~v~~~~~~g~----  264 (476)
T 3lad_A          190 VIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNK-QVTVKFVDAEGE----  264 (476)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSS-CEEEEEESSSEE----
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC-EEEEEEEeCCCc----
Confidence            5899999999999999999999 5899999999999999999999999999999999986543 356777654210    


Q ss_pred             CccccccEEEEecCcchHH----HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGLA----AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl~----~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|.....    +.......+. ..+.+|..++|+.|+||++||++.. +    ...+.+..+++.+..
T Consensus       265 -~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~-~----~~~~~A~~~g~~aa~  338 (476)
T 3lad_A          265 -KSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRG-A----MLAHKASEEGVVVAE  338 (476)
T ss_dssp             -EEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSS-C----CCHHHHHHHHHHHHH
T ss_pred             -EEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCC-c----ccHHHHHHHHHHHHH
Confidence             467899999999952211    1111112222 3477888899999999999996532 2    245566777777666


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       339 ~i  340 (476)
T 3lad_A          339 RI  340 (476)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.41  E-value=5.5e-13  Score=124.26  Aligned_cols=142  Identities=20%  Similarity=0.308  Sum_probs=109.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|+++++ +++++.+++++.+.+.+.+++.||++++++.+++++..+++ +.+.+.++       
T Consensus       201 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g-------  272 (484)
T 3o0h_A          201 YIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENC-YNVVLTNG-------  272 (484)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSS-EEEEETTS-------
T ss_pred             HHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCE-EEEEECCC-------
Confidence            4789999999999999999999 58899999999999999999999999999999999875443 56766654       


Q ss_pred             CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|..    .+.+.....+.+. ..+.+|..++|+.|+||++||++.. +    ...+.+..+++.+..
T Consensus       273 -~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~-~----~~~~~A~~~g~~aa~  346 (484)
T 3o0h_A          273 -QTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGH-I----QLTPVAIHDAMCFVK  346 (484)
T ss_dssp             -CEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTS-C----CCHHHHHHHHHHHHH
T ss_pred             -cEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCC-C----cCHHHHHHHHHHHHH
Confidence             468999999999952    2112222222332 3477888899999999999996542 2    345566777777666


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       347 ~i  348 (484)
T 3o0h_A          347 NA  348 (484)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.41  E-value=3e-13  Score=124.40  Aligned_cols=161  Identities=16%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+||||+|++|+.+|..+.+.+.  +++++|+.....       +.    ..++|.           .      .+....
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~----~~~l~~-----------~------~~~~~~   53 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FA----NCALPY-----------V------IGEVVE   53 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS-------BC----GGGHHH-----------H------HTTSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC-------CC----cchhHH-----------H------HcCCcc
Confidence            48999999999999999988774  588998743211       11    111110           0      010000


Q ss_pred             Ccc-ccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeC--CeEEEEe-cCCCeEEEEcCeEEEccCCC
Q psy11185        183 NVK-SVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQ--HSVEATM-KNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       183 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~--~~~~v~~-~~G~~~~i~ad~vVlAtG~~  257 (312)
                      ... .......                  ....+.++++..++ +..++.  ..+.+.. .+++..++.||+||||||+.
T Consensus        54 ~~~~~~~~~~~------------------~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           54 DRRYALAYTPE------------------KFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             CGGGTBCCCHH------------------HHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEE
T ss_pred             chhhhhhcCHH------------------HHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCc
Confidence            000 0011111                  11244578876554 444443  3444443 34445789999999999999


Q ss_pred             CCCCCCCCCCcce-eccccccCC-----CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEHC-ISSDDIFSL-----EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~~-~~~~~~~~~-----~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+.|+++|...+. .+..+...+     ...+++++|||||.+|+|.|..+...+.+||+
T Consensus       116 p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  175 (437)
T 4eqs_A          116 ANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL  175 (437)
T ss_dssp             ECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             cccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCccee
Confidence            9999999875442 233333322     23478999999999999999999998889986

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.40  E-value=3.9e-13  Score=124.20  Aligned_cols=146  Identities=16%  Similarity=0.209  Sum_probs=107.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++++. +|+++.+.+.+.|++.||++++++.+++++..++. +.+.+.+       
T Consensus       157 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-v~v~~~~-------  228 (452)
T 3oc4_A          157 PIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANG-IVLETSE-------  228 (452)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSC-EEEEESS-------
T ss_pred             HHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCe-EEEEECC-------
Confidence            5899999999999999999999 588876 89999999999999999999999999999854333 4454432       


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~~  170 (312)
                        .++++|.||++.|... ..+.......+ ...+.+|..++|+.|+|||+||++......     .....+.+..+++.
T Consensus       229 --g~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~  306 (452)
T 3oc4_A          229 --QEISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLV  306 (452)
T ss_dssp             --CEEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHH
T ss_pred             --CEEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHH
Confidence              2578999999999521 11111112222 235778888999999999999976543110     11355667777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       307 aa~~i  311 (452)
T 3oc4_A          307 VANNL  311 (452)
T ss_dssp             HTTSS
T ss_pred             HHHHh
Confidence            66543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.39  E-value=5.2e-13  Score=124.61  Aligned_cols=143  Identities=18%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--ecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++. |++++++.+++++..+++ +.+.+.  +++.   
T Consensus       184 ~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~-v~v~~~~~~G~~---  258 (492)
T 3ic9_A          184 VIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDA-VEVIYFDKSGQK---  258 (492)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSS-EEEEEECTTCCE---
T ss_pred             HHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCE-EEEEEEeCCCce---
Confidence            5899999999999999999999 5889999999999999999988 999999999999875443 566665  2311   


Q ss_pred             CCCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEe-ccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                         ..+++|.||++.|...    +.+.......+. ..+.+| ..++|+.|+||++||++...     ...+.+..+++.
T Consensus       259 ---~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~-----~~~~~A~~~g~~  330 (492)
T 3ic9_A          259 ---TTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL-----TLLHEAADDGKV  330 (492)
T ss_dssp             ---EEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSS-----CSHHHHHHHHHH
T ss_pred             ---EEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCC-----ccHHHHHHHHHH
Confidence               4678999999999622    111111122222 246677 78899999999999965432     344566666666


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       331 aa~~i  335 (492)
T 3ic9_A          331 AGTNA  335 (492)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.38  E-value=5e-13  Score=123.57  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=105.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.+++.||++++++++++++...+ .+.+.+.++       
T Consensus       177 ~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g-------  248 (455)
T 2yqu_A          177 VIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK-GARVELEGG-------  248 (455)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-EEEEEETTS-------
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-EEEEEECCC-------
Confidence            4889999999999999999999 5889999999999999999999999999999999986433 345555443       


Q ss_pred             CccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       ..+++|.||++.|... ..   +.......+. ..+.+|..++++.|+||++||++...     ...+.+..++..+..
T Consensus       249 -~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~-----~~~~~A~~~g~~aa~  322 (455)
T 2yqu_A          249 -EVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP-----MLAHKASEEGIAAVE  322 (455)
T ss_dssp             -CEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHHH
T ss_pred             -eEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCc-----cCHHHHHHhHHHHHH
Confidence             5689999999999522 11   1111111222 33667888899999999999965432     234456666666665


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       323 ~i  324 (455)
T 2yqu_A          323 HM  324 (455)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.38  E-value=7.2e-13  Score=126.38  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=110.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++.+++++...+   .+.+.++       
T Consensus       197 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~---~v~~~~g-------  266 (588)
T 3ics_A          197 FIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA---VVRLKSG-------  266 (588)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT---EEEETTS-------
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC---EEEECCC-------
Confidence            5899999999999999999999 5899999999999999999999999999999999975432   4666554       


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCccccccc-----chhhHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC-----IPKKLMHQAALLGEA  170 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-----~~~~~~~~a~~~~~~  170 (312)
                       .++++|.||++.|... ..+...+ .+.+. ..+.+|..++|+.|+|||+||++.....     ......+.+..+++.
T Consensus       267 -~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  345 (588)
T 3ics_A          267 -SVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRM  345 (588)
T ss_dssp             -CEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHH
T ss_pred             -CEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHH
Confidence             5689999999999522 2222111 11221 3477888899999999999997643221     112456677888888


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       346 aa~~i  350 (588)
T 3ics_A          346 LADII  350 (588)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87765

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.37  E-value=7.2e-13  Score=122.91  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=104.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++|+ +++++.+.+.+.+++.||++++++.+++++.++ +.+.+.+. +       
T Consensus       186 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~v~~~-~-------  255 (467)
T 1zk7_A          186 VVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMD-GEFVLTTT-H-------  255 (467)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEET-TEEEEEET-T-------
T ss_pred             HHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEC-C-------
Confidence            4799999999999999999999 58899 999999999999999999999999999998643 32344443 2       


Q ss_pred             CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                       .++++|.||+++|...    +.+.....+.+. ..+.+|..++++.|+||++||++...     ...+.+..++..+..
T Consensus       256 -~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~-----~~~~~A~~~g~~aa~  329 (467)
T 1zk7_A          256 -GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQP-----QFVYVAAAAGTRAAI  329 (467)
T ss_dssp             -EEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBSSC-----CCHHHHHHHHHHHHH
T ss_pred             -cEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCCCc-----ccHHHHHHHHHHHHH
Confidence             4679999999999522    111111122222 23677888999999999999965432     234556677777776


Q ss_pred             HH
Q psy11185        174 AV  175 (312)
Q Consensus       174 ~~  175 (312)
                      +.
T Consensus       330 ~i  331 (467)
T 1zk7_A          330 NM  331 (467)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.36  E-value=1.3e-12  Score=124.62  Aligned_cols=164  Identities=19%  Similarity=0.259  Sum_probs=104.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..+++|||+|++|+.+|..|.+.  +.+++++|+......    ..        +   ...            ....+ .
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~----~~--------~---~lp------------~~~~g-~   87 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF----AN--------C---GLP------------YYIGG-V   87 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB----CG--------G---GHH------------HHHTT-S
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc----cC--------C---CCc------------hhhcC-c
Confidence            46899999999999999999887  678999997543210    00        0   000            00011 0


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEec-eeEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA-LGKFID--QHSVEATM-KNGEKKTLTAENILIATGG  256 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~-~~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~  256 (312)
                      .......                 +...........++++... .+..++  ...+.+.. .+|+...+.||+||+|||+
T Consensus        88 ~~~~~~~-----------------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (588)
T 3ics_A           88 ITERQKL-----------------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA  150 (588)
T ss_dssp             SCCGGGG-----------------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CCChHHh-----------------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC
Confidence            0000000                 0000112234557777543 344443  45566654 4565568999999999999


Q ss_pred             CCCCCCCCCC-Cc-ceeccccccCC--------CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        257 RPNYPDIPGA-KE-HCISSDDIFSL--------EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       257 ~p~~p~~~g~-~~-~~~~~~~~~~~--------~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|..|+++|. +. ..++...+...        ...+++++|||+|.+|+|.+..+...+.+|++
T Consensus       151 ~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  215 (588)
T 3ics_A          151 KPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTL  215 (588)
T ss_dssp             EECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            9999999998 32 23333332222        24688999999999999999999988888886

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.36  E-value=7.9e-13  Score=122.33  Aligned_cols=142  Identities=15%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++.+++++.  ++ +.+...+++      
T Consensus       181 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~-v~v~~~~G~------  251 (458)
T 1lvl_A          181 YIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN--GC-LLANDGKGG------  251 (458)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET--TE-EEEECSSSC------
T ss_pred             HHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe--CC-EEEEECCCc------
Confidence            4899999999999999999999 5899999999999999999999999999999999874  22 333311221      


Q ss_pred             CccccccEEEEecCcchH-H---HHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGL-A---AAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl-~---~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ..++++|.||++.|.... .   +.......+.+.+.+|..++|+.|+||++||++...     ...+.+..++..+..+
T Consensus       252 ~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~-----~~~~~A~~~g~~aa~~  326 (458)
T 1lvl_A          252 QLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP-----MLAHRAMAQGEMVAEI  326 (458)
T ss_dssp             CCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS-----CCHHHHHHHHHHHHHH
T ss_pred             eEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEeeccCCCc-----ccHHHHHHHHHHHHHH
Confidence            146899999999995221 1   111001111116778888999999999999965432     3455677777777776


Q ss_pred             H
Q psy11185        175 V  175 (312)
Q Consensus       175 ~  175 (312)
                      .
T Consensus       327 i  327 (458)
T 1lvl_A          327 I  327 (458)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.36  E-value=2.2e-12  Score=119.09  Aligned_cols=145  Identities=17%  Similarity=0.269  Sum_probs=108.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++ +++++. +++++.+.+.+.+++. |++++++.+.+++...  .+.....++      
T Consensus       158 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v~~~g------  228 (449)
T 3kd9_A          158 YIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKVVTDA------  228 (449)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEEEETT------
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEEEeCC------
Confidence            4899999999999999999999 588987 9999999999999999 9999999999987532  233334443      


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCccccccc-----chhhHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC-----IPKKLMHQAALLGE  169 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-----~~~~~~~~a~~~~~  169 (312)
                        .++++|.||++.|.. ...+...+ .+.+. ..+.+|..++|+.|+||++||++.....     ......+.+..+++
T Consensus       229 --~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~  306 (449)
T 3kd9_A          229 --GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGY  306 (449)
T ss_dssp             --EEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHH
T ss_pred             --CEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHH
Confidence              468999999999963 22222211 22222 2477888899999999999997643321     11245677778888


Q ss_pred             HHHHHH
Q psy11185        170 AIKDAV  175 (312)
Q Consensus       170 ~~~~~~  175 (312)
                      .+..+.
T Consensus       307 ~aa~~i  312 (449)
T 3kd9_A          307 VAGSNI  312 (449)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.34  E-value=2.6e-12  Score=124.30  Aligned_cols=146  Identities=24%  Similarity=0.290  Sum_probs=97.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+....                         .++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~--------~gg~~~~~~-------------------------~~~  419 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE--------IGGQFNIAK-------------------------QIP  419 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS--------SCTTHHHHT-------------------------TST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC--------CCCeeeccc-------------------------cCC
Confidence            47899999999999999999999999999997542        222111000                         001


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEE-EcCeEEEccCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTL-TAENILIATGGRPNYP  261 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i-~ad~vVlAtG~~p~~p  261 (312)
                          ...++..+..+           +...+...++++..++...            .  ..+ .||+||+|||+.|+.|
T Consensus       420 ----~~~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~------------~--~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          420 ----GKEEFYETLRY-----------YRRMIEVTGVTLKLNHTVT------------A--DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ----TCTTHHHHHHH-----------HHHHHHHHTCEEEESCCCC------------S--SSSCCSSEEEECCCEEECCC
T ss_pred             ----CHHHHHHHHHH-----------HHHHHHHcCCEEEeCcEec------------H--HHhhcCCEEEEccCCCcCCC
Confidence                11112111111           1233455688887654210            0  124 7999999999999999


Q ss_pred             CCCCCCc-ceeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeee
Q psy11185        262 DIPGAKE-HCISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVT  310 (312)
Q Consensus       262 ~~~g~~~-~~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~  310 (312)
                      +++|.+. ..++..++... ...+++|+|||||.+|+|.|..|...+.+|+
T Consensus       471 ~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          471 PIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            9999864 24454444433 3457899999999999999999988776554

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.33  E-value=1.3e-12  Score=121.10  Aligned_cols=142  Identities=17%  Similarity=0.205  Sum_probs=106.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccc-hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--eccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGF-DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~-~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~   95 (312)
                      .+|+|+|..|+++|.+||++++ +++|+.+ ++++.+.+.+.|+   |++++++.+++++..+++.+.+.+.  +|+   
T Consensus       182 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~---  255 (466)
T 3l8k_A          182 YIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGS---  255 (466)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSC---
T ss_pred             HHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCc---
Confidence            5899999999999999999999 5899998 9999999999887   9999999999998754244566665  231   


Q ss_pred             cCCCccccccEEEEecCcch---HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG---LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK  172 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g---l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~  172 (312)
                         ..++++|.||++.|...   +.+.....+.+.+.+.+|..++|+.|+||++||++...     ...+.+..++..+.
T Consensus       256 ---~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~~~~~-----~~~~~A~~~g~~aa  327 (466)
T 3l8k_A          256 ---KKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLA-----PYYHAAVRMSIAAA  327 (466)
T ss_dssp             ---CEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGGTCSC-----CSHHHHHHHHHHHH
T ss_pred             ---eEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEecCCCC-----ccHhHHHHHHHHHH
Confidence               13689999999999522   21221112222222778888999999999999965432     34566777777777


Q ss_pred             HHH
Q psy11185        173 DAV  175 (312)
Q Consensus       173 ~~~  175 (312)
                      .+.
T Consensus       328 ~~i  330 (466)
T 3l8k_A          328 NNI  330 (466)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.32  E-value=5e-12  Score=120.82  Aligned_cols=146  Identities=27%  Similarity=0.436  Sum_probs=104.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-----CC---CeeEEEE--e
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-----AD---GKLKVQY--K   89 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-----~~---~~~~v~~--~   89 (312)
                      .+|+|+|..|+++|.+||+++|+.+++.+++++.+.+.+.|++.||++++++.+.+++..     .+   +.+.+.+  .
T Consensus       296 ~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~  375 (598)
T 2x8g_A          296 YVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYT  375 (598)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEET
T ss_pred             HHHHHHHHHHHHcCCEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeC
Confidence            589999999999999999999988889999999999999999999999999988888643     11   3333433  2


Q ss_pred             eccccccCCCccccccEEEEecCcch-HH---HHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHH
Q psy11185         90 NVAEVRQDNTHKYDYDLLVLGGGSGG-LA---AAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA  164 (312)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vivg~G~~g-l~---~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a  164 (312)
                      ++..      ..+++|.||++.|... ..   +.....+.+. ..+.+|..++|+.|+|||+||++...+    ...+.+
T Consensus       376 ~g~~------~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~----~~~~~A  445 (598)
T 2x8g_A          376 DGKK------FEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP----QLTPVA  445 (598)
T ss_dssp             TSCE------EEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC----CCHHHH
T ss_pred             CCcE------EeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC----ccHHHH
Confidence            3310      2345999999999532 11   1111111222 247778888999999999999754432    244556


Q ss_pred             HHHHHHHHHHH
Q psy11185        165 ALLGEAIKDAV  175 (312)
Q Consensus       165 ~~~~~~~~~~~  175 (312)
                      ..+++.+..+.
T Consensus       446 ~~~g~~aa~~i  456 (598)
T 2x8g_A          446 IQAGRYLARRL  456 (598)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHhHHHHHHHH
Confidence            66777666654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.32  E-value=9.7e-13  Score=118.93  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|++||++++ +++++. +++++.+.+.+.+++.||++++++.+.++              +      
T Consensus       156 ~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i--------------g------  215 (385)
T 3klj_A          156 ILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM--------------G------  215 (385)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC--------------H------
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc--------------C------
Confidence            4899999999999999999999 588876 89999999999999999999999988865              2      


Q ss_pred             CCccccccEEEEecCcch-HHHHHH-HHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKE-AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~-~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                        ..+++|.||++.|... ..++.. ....+ +.+.+|..++|+.|+|||+||++...+.. ......+..+++.+..+.
T Consensus       216 --~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-~~~~~~A~~qg~~aa~~i  291 (385)
T 3klj_A          216 --DLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFYGKN-PGLINIANKQGEVAGLNA  291 (385)
T ss_dssp             --HHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCBCSSTTEEECGGGEEETTBC-CCCHHHHHHHHHHHHHHH
T ss_pred             --eEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcccCCCCEEEEEeeEecCCCc-ccHHHHHHHHHHHHHHHh
Confidence              4678999999999521 111111 11122 23788889999999999999976543321 123455666677666654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.32  E-value=3.5e-12  Score=117.60  Aligned_cols=146  Identities=19%  Similarity=0.163  Sum_probs=106.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+|||+++ +++++ .+++++.+.+.+.+++.||++++++.+++++.+ +....+.+ ++      
T Consensus       159 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~------  230 (447)
T 1nhp_A          159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DK------  230 (447)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SS------
T ss_pred             HHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CC------
Confidence            4799999999999999999999 58887 689999999999999999999999999999753 22113443 32      


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCccccccc-----chhhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGC-----IPKKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-----~~~~~~~~a~~~~~~  170 (312)
                        .++++|.||++.|... ......+.+.+. ..+.+|.+++|+.|+||++||++.....     ......+.+..++..
T Consensus       231 --~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  308 (447)
T 1nhp_A          231 --NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF  308 (447)
T ss_dssp             --CEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHH
T ss_pred             --CEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHH
Confidence              4688999999999522 111111122222 3477888899999999999997643211     012356677778887


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       309 aa~~i  313 (447)
T 1nhp_A          309 AVKNL  313 (447)
T ss_dssp             HHHTS
T ss_pred             HHHhh
Confidence            77654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.31  E-value=3e-12  Score=119.08  Aligned_cols=146  Identities=16%  Similarity=0.131  Sum_probs=106.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++++++.+++++.+ +....+.+ ++       
T Consensus       196 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~-------  266 (480)
T 3cgb_A          196 AIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DK-------  266 (480)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TT-------
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CC-------
Confidence            4799999999999999999999 58899999999999999999999999999999999753 22112333 22       


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGEA  170 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~~  170 (312)
                       .++++|.||++.|... ..+...+ .+.+ ...+.+|..++|+.|+|||+||++......     .....+.+..++..
T Consensus       267 -~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  345 (480)
T 3cgb_A          267 -GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRL  345 (480)
T ss_dssp             -EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHH
T ss_pred             -CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHH
Confidence             3679999999999532 1111111 1112 134778888999999999999976443211     11346677777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       346 aa~~i  350 (480)
T 3cgb_A          346 AGLNM  350 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.30  E-value=3.7e-12  Score=117.54  Aligned_cols=152  Identities=26%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ...|++|||+|++|+.+|..|.+.+.+++++|+...        .|+..                         .++.  
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~--------~GG~l-------------------------~~gi--  165 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR--------MGGLL-------------------------VYGI--  165 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS--------CSTHH-------------------------HHTS--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC--------CCCee-------------------------eecC--
Confidence            357999999999999999999999999999997532        23210                         0111  


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY  260 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~  260 (312)
                      +.   ...+.. +..           .....+...++++..++..  . .  .++.+++   .+.||+||+|||+. |+.
T Consensus       166 p~---~~~~~~-~~~-----------~~~~~l~~~gv~~~~~~~v--~-~--~v~~~~~---~~~~d~vvlAtG~~~~~~  222 (456)
T 2vdc_G          166 PG---FKLEKS-VVE-----------RRVKLLADAGVIYHPNFEV--G-R--DASLPEL---RRKHVAVLVATGVYKARD  222 (456)
T ss_dssp             CT---TTSCHH-HHH-----------HHHHHHHHTTCEEETTCCB--T-T--TBCHHHH---HSSCSEEEECCCCCEECC
T ss_pred             CC---ccCCHH-HHH-----------HHHHHHHHCCcEEEeCCEe--c-c--EEEhhHh---HhhCCEEEEecCCCCCCC
Confidence            10   111111 111           1123355678888766532  1 1  1222333   35699999999986 777


Q ss_pred             CCCCCCCcc-eeccccc----------c--------CCCCCCCeEEEEcCchhhHHHHHHhhc-Cceeeee
Q psy11185        261 PDIPGAKEH-CISSDDI----------F--------SLEKPPGKTLVVGAGYIGKLETWDSNS-GCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~-~~~~~~~----------~--------~~~~~~~~v~VvG~G~sa~~~a~~l~~-~~~~V~~  311 (312)
                      |+++|.+.. .++..++          .        .....+++|+|||||++|+|+|..+.. ++++|++
T Consensus       223 ~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vti  293 (456)
T 2vdc_G          223 IKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKC  293 (456)
T ss_dssp             TTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEE
Confidence            889987532 2211111          0        122467899999999999998877554 4556876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.28  E-value=1.2e-11  Score=114.26  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             cccEEEEecCcchHHHHHHHHH-C------CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAA-H------GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~-~------~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      .+|++|||+|++|+.+|..+.+ .      +.+++++|+...        .|+.+.                        
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~--------~gg~~~------------------------   50 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT--------PWGLVR------------------------   50 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS--------CSTHHH------------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC--------CCCccc------------------------
Confidence            4689999999999999999988 6      778999997532        122110                        


Q ss_pred             HcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        176 AYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                       ++. .+    .+.....+..           .+...+...+++++.+..  ++ .  .++..++   .+.||+||+|||
T Consensus        51 -~gv-~p----~~~~~~~~~~-----------~~~~~~~~~~v~~~~~v~--v~-~--~v~~~~~---~~~~d~lViAtG  105 (456)
T 1lqt_A           51 -SGV-AP----DHPKIKSISK-----------QFEKTAEDPRFRFFGNVV--VG-E--HVQPGEL---SERYDAVIYAVG  105 (456)
T ss_dssp             -HTS-CT----TCTGGGGGHH-----------HHHHHHTSTTEEEEESCC--BT-T--TBCHHHH---HHHSSEEEECCC
T ss_pred             -ccc-CC----CCCCHHHHHH-----------HHHHHHhcCCCEEEeeEE--EC-C--EEEECCC---eEeCCEEEEeeC
Confidence             110 00    0111111111           122335567888875532  22 1  1333444   478999999999


Q ss_pred             CC-CCCCCCCCCCcc-eeccccc-----------cCCC-CCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        256 GR-PNYPDIPGAKEH-CISSDDI-----------FSLE-KPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       256 ~~-p~~p~~~g~~~~-~~~~~~~-----------~~~~-~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      +. |+.|++||.+.. .+++.++           .... ..+++|+|||+|++|+|.|..|..
T Consensus       106 ~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~  168 (456)
T 1lqt_A          106 AQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLT  168 (456)
T ss_dssp             CCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHh
Confidence            97 788889997532 3333332           1222 257789999999999999998876

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.27  E-value=8.6e-12  Score=115.29  Aligned_cols=145  Identities=15%  Similarity=0.201  Sum_probs=90.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...|++|||+|++|+.+|..+.+.+  .+++++|+...        .|++. ..++.                       
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~--------~gg~~-~~g~~-----------------------   52 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV--------PFGLV-RFGVA-----------------------   52 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS--------SCTHH-HHTSC-----------------------
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc--------CCcee-ecccC-----------------------
Confidence            3579999999999999999998877  78999997542        12211 10000                       


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-  258 (312)
                        +    .+.....+..           .+...+...++++..+...  . .  .++..+.   .+.||+||+|||+.| 
T Consensus        53 --p----~~~~~~~~~~-----------~~~~~~~~~gv~~~~~~~v--~-~--~V~~~~~---~~~~d~lVlAtGs~~~  107 (460)
T 1cjc_A           53 --P----DHPEVKNVIN-----------TFTQTARSDRCAFYGNVEV--G-R--DVTVQEL---QDAYHAVVLSYGAEDH  107 (460)
T ss_dssp             --T----TCGGGGGHHH-----------HHHHHHTSTTEEEEBSCCB--T-T--TBCHHHH---HHHSSEEEECCCCCEE
T ss_pred             --C----CCccHHHHHH-----------HHHHHHHhCCcEEEeeeEE--e-e--EEEeccc---eEEcCEEEEecCcCCC
Confidence              0    0111111111           1223456678888765421  1 1  1223332   468999999999985 


Q ss_pred             CCCCCCCCCcc-eeccccc----------cCCC--CCCCeEEEEcCchhhHHHHHHhh
Q psy11185        259 NYPDIPGAKEH-CISSDDI----------FSLE--KPPGKTLVVGAGYIGKLETWDSN  303 (312)
Q Consensus       259 ~~p~~~g~~~~-~~~~~~~----------~~~~--~~~~~v~VvG~G~sa~~~a~~l~  303 (312)
                      +.|++||.+.. ++++.++          ....  ..+++|+|||+|++|+|+|..|.
T Consensus       108 ~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~  165 (460)
T 1cjc_A          108 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILL  165 (460)
T ss_dssp             CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHh
Confidence            77899997532 3333333          1221  24688999999999999999987

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.27  E-value=2.7e-11  Score=106.31  Aligned_cols=128  Identities=14%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc-cccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE-VRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~-~~~~   97 (312)
                      .+|+|+|..|+++|.+||+++++ .++  .++.+.+.+.+.+++.||++++++.+.+++.+.+....+.+.+... +   
T Consensus       155 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g---  229 (320)
T 1trb_A          155 NTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSD---  229 (320)
T ss_dssp             HHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCC---
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCC---
Confidence            48999999999999999999995 443  3677888888999999999999999999986543322466654210 1   


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCCCcEEEEeccC-----CCCCCcccccCCcccc
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDYVI-----PSPQGTTWGLGGTCVN  152 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~~~-----~~~~~~v~a~Gd~~~~  152 (312)
                      ....+++|.||++.|... ..+.......+...+.+|..+     +++.|+||++||++..
T Consensus       230 ~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~  290 (320)
T 1trb_A          230 NIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH  290 (320)
T ss_dssp             CCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCS
T ss_pred             ceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCC
Confidence            014689999999999521 111110111123456777764     8999999999996554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.26  E-value=9e-12  Score=121.49  Aligned_cols=156  Identities=19%  Similarity=0.290  Sum_probs=98.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      ..|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+......                          
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~--------~GG~~~~~~~~--------------------------  434 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK--------IGGHLNQVAAL--------------------------  434 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS--------TTTTHHHHTTS--------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC--------cCCeeeecccC--------------------------
Confidence            46899999999999999999999999999997543        23322111100                          


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-----
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-----  257 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-----  257 (312)
                         +...++..+..+.....+.+     ......++++..+.         .++..++  ..+.||+||+|||+.     
T Consensus       435 ---pg~~~~~~~~~~~~~~i~~~-----~~~~~~~v~i~~~~---------~v~~~~~--~~~~~d~vviAtG~~~~~~~  495 (729)
T 1o94_A          435 ---PGLGEWSYHRDYRETQITKL-----LKKNKESQLALGQK---------PMTADDV--LQYGADKVIIATGARWNTDG  495 (729)
T ss_dssp             ---TTCGGGHHHHHHHHHHHHHH-----HHHSTTCEEECSCC---------CCCHHHH--HTSCCSEEEECCCEEECSSC
T ss_pred             ---CChHHHHHHHHHHHHHHHHh-----hcccCCceEEEeCe---------EEehhhc--cccCCCEEEEcCCCCccccc
Confidence               01123333333322221111     01122345543221         2233344  468899999999987     


Q ss_pred             ---CCCCCCCCCCc---ceeccccccCCC-CCCCeEEEEc--CchhhHHHHHHhhcCceeeee
Q psy11185        258 ---PNYPDIPGAKE---HCISSDDIFSLE-KPPGKTLVVG--AGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 ---p~~p~~~g~~~---~~~~~~~~~~~~-~~~~~v~VvG--~G~sa~~~a~~l~~~~~~V~~  311 (312)
                         |..|+++|.+.   ..++..++.... ..+++|+|||  ||.+|+|.|..|...+.+|++
T Consensus       496 ~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtl  558 (729)
T 1o94_A          496 TNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI  558 (729)
T ss_dssp             CCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEE
T ss_pred             ccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEE
Confidence               56688998862   245555544433 3456899999  999999999999888888886

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.26  E-value=3.4e-12  Score=117.32  Aligned_cols=149  Identities=21%  Similarity=0.317  Sum_probs=94.0

Q ss_pred             ccEEEEecCcchHHHHHHHHH---CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .|+||||+|++|+.+|..+.+   .+.+++++|+....            ...+.    ...            ...+. 
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~------------~~~~~----~~~------------~~~g~-   55 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF------------QFVPS----NPW------------VGVGW-   55 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE------------ECGGG----HHH------------HHHTS-
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC------------cccCC----ccc------------cccCc-
Confidence            589999999999999999988   78899999974310            00000    000            00010 


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                              .+..           .+...+...+...+++++.+.+..++.....+++.+|  .++.||+||+|||+.|+.
T Consensus        56 --------~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~  114 (437)
T 3sx6_A           56 --------KERD-----------DIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADG--NTVHYDYLMIATGPKLAF  114 (437)
T ss_dssp             --------SCHH-----------HHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCCEECG
T ss_pred             --------cCHH-----------HHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCC--CEEECCEEEECCCCCcCc
Confidence                    0000           1111122345667999988877777765556777788  679999999999999999


Q ss_pred             CCCCCCCcc------eeccccccCCC------CCCCeEEEEcCchhh------HHHHHHh
Q psy11185        261 PDIPGAKEH------CISSDDIFSLE------KPPGKTLVVGAGYIG------KLETWDS  302 (312)
Q Consensus       261 p~~~g~~~~------~~~~~~~~~~~------~~~~~v~VvG~G~sa------~~~a~~l  302 (312)
                      |++||.+.+      ..+..+...+.      ..+++++|||+|++|      +|.+..+
T Consensus       115 ~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~l  174 (437)
T 3sx6_A          115 ENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIV  174 (437)
T ss_dssp             GGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHH
T ss_pred             ccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHH
Confidence            999998642      12222222211      014567899997765      6766443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.25  E-value=2.1e-11  Score=106.71  Aligned_cols=126  Identities=11%  Similarity=0.033  Sum_probs=83.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      ++|+|+|..|+++|++|||++|. +.+...+     ...+.+...+++.+..+.+.++.........+.+.+....   .
T Consensus       162 ~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~  233 (314)
T 4a5l_A          162 DAAMEEALHLTKYGSKVIILHRRDAFRASKT-----MQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSG---E  233 (314)
T ss_dssp             HHHHHHHHHHTTTSSEEEEECSSSSCCSCHH-----HHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTC---C
T ss_pred             hHHHHHHHHHHHhCCeeeeecccccccccch-----hhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccc---c
Confidence            59999999999999999999984 4433322     2244556678888888888888765443334444432211   1


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccccc
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNV  153 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~  153 (312)
                      ..++++|.++++.|... ..+.........+.+++++.++|+.|+|||+||++...
T Consensus       234 ~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~  289 (314)
T 4a5l_A          234 YKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRV  289 (314)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSS
T ss_pred             ceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCc
Confidence            25789999999999521 11111112223344557778899999999999976543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.25  E-value=2.9e-11  Score=121.17  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|+||||+|++|+.+|..+.+.+.+++++|+...        .|+.|..  + + +                   ..+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~--------~GG~~~~--~-~-k-------------------~~i  175 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAE--------AGGTLLD--T-A-G-------------------EQI  175 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--------SSGGGGG--S-S-C-------------------CEE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC--------CCceecc--C-C-c-------------------ccc
Confidence            358999999999999999999999999999997542        2332221  0 0 0                   000


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEece-eEEeeCCe-----------EEEEec----CCCeEE
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNAL-GKFIDQHS-----------VEATMK----NGEKKT  244 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~-~~~~~~~~-----------~~v~~~----~G~~~~  244 (312)
                      ..    . ..   ..+..        .+...+.. .++++..++ +..+....           +.+...    +++...
T Consensus       176 ~~----~-~~---~~~~~--------~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~  239 (965)
T 2gag_A          176 DG----M-DS---SAWIE--------QVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWH  239 (965)
T ss_dssp             TT----E-EH---HHHHH--------HHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEE
T ss_pred             CC----C-CH---HHHHH--------HHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEE
Confidence            00    0 00   01110        11122333 377776553 33222211           111110    122257


Q ss_pred             EEcCeEEEccCCCCCCCCCCCCCcc-eeccccc---cC-CCC-CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        245 LTAENILIATGGRPNYPDIPGAKEH-CISSDDI---FS-LEK-PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       245 i~ad~vVlAtG~~p~~p~~~g~~~~-~~~~~~~---~~-~~~-~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.||+||+|||+.|+.|++||.+.. .+++..+   .. ... .+++|+|||+|.+|+|+|..|...+.+|+|
T Consensus       240 i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtv  312 (965)
T 2gag_A          240 IRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAV  312 (965)
T ss_dssp             EEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEE
T ss_pred             EECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEE
Confidence            9999999999999999999988643 3333222   21 222 347899999999999999998887777876

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.24  E-value=3.6e-11  Score=105.29  Aligned_cols=143  Identities=14%  Similarity=0.057  Sum_probs=89.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      +||+|+|..|+++|.+|||++| +++++..+..     .+.+++.++.+.....+....................   ..
T Consensus       155 ~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  226 (312)
T 4gcm_A          155 DSAVEEGTFLTKFADKVTIVHRRDELRAQRILQ-----DRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKD---GS  226 (312)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHH-----HHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTT---CC
T ss_pred             HHHHHHHHHHHhcCCEEEEEecccccCcchhHH-----HHHHHhcCcceeeecceeeeeccccccccceeeeecC---Cc
Confidence            5899999999999999999999 5777654433     4566778888888777766654322111111111111   11


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ...+++|.|+++.|... ..+...+ .......+++|+.++|+.|+|||+||++....    ...+.+..+++....+
T Consensus       227 ~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~----~~~~~A~~~G~~AA~~  300 (312)
T 4gcm_A          227 EETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL----RQIVTATGDGSIAAQS  300 (312)
T ss_dssp             EEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC----CSHHHHHHHHHHHHHH
T ss_pred             eeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc----hHHHHHHHHHHHHHHH
Confidence            24678999999999522 1111111 12223347888999999999999999654322    2344555555555443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.23  E-value=3.6e-11  Score=106.26  Aligned_cols=124  Identities=15%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe---eccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK---NVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~---~~~~~~   95 (312)
                      .+|+|+|..|++.|.+||+++|+ ++++.  ++..+.+.+.+++.||++++++.+.+++.+ +....+.+.   +++.  
T Consensus       162 ~~g~e~a~~l~~~g~~V~~v~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~-~~~~~v~~~~~~~g~~--  236 (335)
T 2zbw_A          162 DSAVDWALNLLDTARRITLIHRRPQFRAH--EASVKELMKAHEEGRLEVLTPYELRRVEGD-ERVRWAVVFHNQTQEE--  236 (335)
T ss_dssp             HHHHHHHHHTTTTSSEEEEECSSSSCCSC--HHHHHHHHHHHHTTSSEEETTEEEEEEEES-SSEEEEEEEETTTCCE--
T ss_pred             HHHHHHHHHHHhhCCEEEEEEcCCccCcc--HHHHHHHHhccccCCeEEecCCcceeEccC-CCeeEEEEEECCCCce--
Confidence            58999999999999999999995 55443  466788888899999999999999999863 332356665   3311  


Q ss_pred             cCCCccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185         96 QDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                          .++++|.||++.|... ..+...+ ...+...+.+|..++++.|+||++||++..
T Consensus       237 ----~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~  291 (335)
T 2zbw_A          237 ----LALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTY  291 (335)
T ss_dssp             ----EEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEEC
T ss_pred             ----EEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEecccccc
Confidence                4678999999999522 1111111 111224577888889999999999997654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.20  E-value=5.6e-12  Score=117.66  Aligned_cols=88  Identities=24%  Similarity=0.307  Sum_probs=62.0

Q ss_pred             cCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCC--c---c---eeccccccCCC---CC
Q psy11185        215 DKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--E---H---CISSDDIFSLE---KP  282 (312)
Q Consensus       215 ~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~--~---~---~~~~~~~~~~~---~~  282 (312)
                      ..+|+++.++ +..++....++++.+|  .++.||+||+|||+.|+.|++++..  .   .   ..+.+++..+.   ..
T Consensus       102 ~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~  179 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE  179 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHH
T ss_pred             cCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhc
Confidence            5688988774 5555544445666778  6799999999999999887765531  1   1   12333333222   24


Q ss_pred             CCeEEEEcCchhhHHHHHHhhc
Q psy11185        283 PGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       283 ~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      +++|+|||+|++|+|.|..|..
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~  201 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGR  201 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            7899999999999999998875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.19  E-value=4.2e-11  Score=111.70  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             hhhhhhhHhhhc----cCCeEEEEEc-cCCC-ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc
Q psy11185         20 DSGLECAGFLNG----LGFNATVMIR-SVPL-RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE   93 (312)
Q Consensus        20 ~ig~E~A~~l~~----~g~~vtl~~~-~~~l-~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~   93 (312)
                      .+|+|+|..|++    +|.+||++++ ++++ +.+++++.+.+.+.+++.||++++++.+++++.. ++.+.+.+.++  
T Consensus       190 ~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~~v~l~dG--  266 (493)
T 1m6i_A          190 FLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKLLIKLKDG--  266 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEEEEEETTS--
T ss_pred             HHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeEEEEECCC--
Confidence            489999999987    5789999998 4544 4578889999999999999999999999999754 33355666655  


Q ss_pred             cccCCCccccccEEEEecCcc-hHHHHHHH-HHCC--CcEEEEeccCCCCCCcccccCCcccccccc----hhhHHHHHH
Q psy11185         94 VRQDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCI----PKKLMHQAA  165 (312)
Q Consensus        94 ~~~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~----~~~~~~~a~  165 (312)
                            .++++|.||++.|.. ...++..+ ...+  ...+++|..+++ .|+|||+||++......    .......+.
T Consensus       267 ------~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~  339 (493)
T 1m6i_A          267 ------RKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAV  339 (493)
T ss_dssp             ------CEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHH
T ss_pred             ------CEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccCcccCccccchHHHHH
Confidence                  578999999999952 12222222 2222  134667887887 69999999976542110    011233566


Q ss_pred             HHHHHHHHHH
Q psy11185        166 LLGEAIKDAV  175 (312)
Q Consensus       166 ~~~~~~~~~~  175 (312)
                      .++..+..+.
T Consensus       340 ~qg~~aa~ni  349 (493)
T 1m6i_A          340 VSGRLAGENM  349 (493)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6777666654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.18  E-value=3.6e-12  Score=119.01  Aligned_cols=155  Identities=20%  Similarity=0.293  Sum_probs=93.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      -.+||||+|++|+.+|..|.+.+.+++++|+...    ..|        .+.++.                ...| .+..
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~----~~~--------~PlL~~----------------va~G-~l~~   93 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY----FLF--------TPLLPS----------------APVG-TVDE   93 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE----EEC--------GGGGGG----------------TTTT-SSCG
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC----ccc--------ccchhH----------------Hhhc-cccH
Confidence            3699999999999999999877889999997421    000        000000                0000 0000


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEec----------------CCCeEEE
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATMK----------------NGEKKTL  245 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~~----------------~G~~~~i  245 (312)
                       .....+...+                ......+++++.+.+..++.  ..+++...                .++..++
T Consensus        94 -~~i~~p~~~~----------------~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i  156 (502)
T 4g6h_A           94 -KSIIEPIVNF----------------ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEI  156 (502)
T ss_dssp             -GGGEEEHHHH----------------HTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEE
T ss_pred             -HHhhhhHHHH----------------HHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEE
Confidence             0000000000                11234578888888776664  34444321                1223789


Q ss_pred             EcCeEEEccCCCCCCCCCCCCCcceeccccc---cCC---------------CC-----CCCeEEEEcCchhhHHHHHHh
Q psy11185        246 TAENILIATGGRPNYPDIPGAKEHCISSDDI---FSL---------------EK-----PPGKTLVVGAGYIGKLETWDS  302 (312)
Q Consensus       246 ~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~---~~~---------------~~-----~~~~v~VvG~G~sa~~~a~~l  302 (312)
                      .||+||||||+.|+.|++||..++.+.....   ..+               ..     ...+++|||||++|+|.|.+|
T Consensus       157 ~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l  236 (502)
T 4g6h_A          157 KYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGEL  236 (502)
T ss_dssp             ECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred             eCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHH
Confidence            9999999999999999999986553322221   110               00     123799999999999999887


Q ss_pred             hc
Q psy11185        303 NS  304 (312)
Q Consensus       303 ~~  304 (312)
                      ..
T Consensus       237 ~~  238 (502)
T 4g6h_A          237 QD  238 (502)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.18  E-value=2.2e-11  Score=118.20  Aligned_cols=151  Identities=23%  Similarity=0.313  Sum_probs=100.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+...        .|+.+..                     ...+    
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~--------~GG~~~~---------------------~~~~----  436 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD--------LGGRVTQ---------------------ESAL----  436 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS--------SCTHHHH---------------------HHTS----
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCCEeee---------------------ccCC----
Confidence            357899999999999999999999999999997542        3331110                     0000    


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC---
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR---  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~---  257 (312)
                          +...++..+..+..           ..+... ++++..++.         +...++  .++.+|+||+|||+.   
T Consensus       437 ----p~~~~~~~~~~~~~-----------~~~~~~~gv~~~~~~~---------v~~~~~--~~~~~d~lvlAtG~~~~~  490 (690)
T 3k30_A          437 ----PGLSAWGRVKEYRE-----------AVLAELPNVEIYRESP---------MTGDDI--VEFGFEHVITATGATWRT  490 (690)
T ss_dssp             ----TTCGGGGHHHHHHH-----------HHHHTCTTEEEESSCC---------CCHHHH--HHTTCCEEEECCCEEECS
T ss_pred             ----CchhHHHHHHHHHH-----------HHHHHcCCCEEEECCe---------ecHHHH--hhcCCCEEEEcCCCcccc
Confidence                11223333333322           233444 777765432         222333  567899999999987   


Q ss_pred             -----CCCCCCCCCCc-ceeccccccCCC-CCCCeEEEEc--CchhhHHHHHHhhcCceeeee
Q psy11185        258 -----PNYPDIPGAKE-HCISSDDIFSLE-KPPGKTLVVG--AGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 -----p~~p~~~g~~~-~~~~~~~~~~~~-~~~~~v~VvG--~G~sa~~~a~~l~~~~~~V~~  311 (312)
                           |..|+++|.+. ..++..++.... ..+++|+|||  +|.+|+|.+..|...+.+|++
T Consensus       491 ~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtl  553 (690)
T 3k30_A          491 DGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSI  553 (690)
T ss_dssp             SCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEE
T ss_pred             ccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEE
Confidence                 45688888754 345555555443 3456799999  999999999999988888886

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.18  E-value=3.1e-11  Score=121.78  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=96.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...|++|||+|++|+.+|..|.+.|. +++++|+...        .|+.+.                         ++. 
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~--------~GG~~~-------------------------~~i-  231 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY--------VGGLST-------------------------SEI-  231 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS--------CSTHHH-------------------------HTS-
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC--------CCcccc-------------------------ccC-
Confidence            35799999999999999999999998 6999997432        333110                         110 


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPN  259 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~  259 (312)
                       +.   +..... +..+           ....+...||++..++...  .+.  ++..++  ..+.||+||+|||+ .|+
T Consensus       232 -p~---~~~~~~-~~~~-----------~~~~~~~~gv~~~~~~~v~--~~~--v~~~~~--~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          232 -PQ---FRLPYD-VVNF-----------EIELMKDLGVKIICGKSLS--ENE--ITLNTL--KEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             -CT---TTSCHH-HHHH-----------HHHHHHTTTCEEEESCCBS--TTS--BCHHHH--HHTTCCEEEECCCCCEEC
T ss_pred             -Cc---ccCCHH-HHHH-----------HHHHHHHCCcEEEcccEec--cce--EEhhhc--CccCCCEEEEecCCCCCC
Confidence             00   111111 1111           1234567799988776431  112  233344  45789999999998 588


Q ss_pred             CCCC-CCCCc--ceeccccccC----------------CCCCCCeEEEEcCchhhHHHHHHhhcCc-eeeee
Q psy11185        260 YPDI-PGAKE--HCISSDDIFS----------------LEKPPGKTLVVGAGYIGKLETWDSNSGC-GNVTI  311 (312)
Q Consensus       260 ~p~~-~g~~~--~~~~~~~~~~----------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~-~~V~~  311 (312)
                      .+++ +|...  ..+++.+++.                +...+++|+|||||++|+|+|..+...+ ++||+
T Consensus       290 ~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtv  361 (1025)
T 1gte_A          290 TDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFL  361 (1025)
T ss_dssp             CCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEE
Confidence            7664 45431  2333332221                1234679999999999999998876654 57876

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.15  E-value=7.8e-11  Score=105.28  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--ecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+|++++++ ++++.  +.+.+.+.+.+++.||++++++.+.+++.+.+....+.+.  +++    
T Consensus       173 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~----  246 (360)
T 3ab1_A          173 DSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS----  246 (360)
T ss_dssp             HHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCC----
T ss_pred             HHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCC----
Confidence            58999999999999999999995 55443  3556777788888999999999999998643322245554  331    


Q ss_pred             CCCccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         97 DNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                        ...+++|.||++.|... ..+...+ ...+...+.+|..++++.|+||++||++...+.  ......+..++..+..+
T Consensus       247 --~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--~~~~~~A~~~g~~aa~~  322 (360)
T 3ab1_A          247 --KWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK--LKIIQTGLSEATMAVRH  322 (360)
T ss_dssp             --EEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC--CCSHHHHHHHHHHHHHH
T ss_pred             --eEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc--cceeehhHHHHHHHHHH
Confidence              14678999999999532 1111111 111224677888889999999999997653321  12334444455544443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.14  E-value=1.1e-10  Score=102.63  Aligned_cols=123  Identities=17%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|++.|.+|++++++..+..++..     .+.|++.||++++++.+.+++.+.+ ...+.+.+...+.   .
T Consensus       164 ~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~-----~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~g~---~  234 (332)
T 3lzw_A          164 DSAVDWALMLEPIAKEVSIIHRRDKFRAHEHS-----VENLHASKVNVLTPFVPAELIGEDK-IEQLVLEEVKGDR---K  234 (332)
T ss_dssp             HHHHHHHHHHTTTBSEEEEECSSSSCSSCHHH-----HHHHHHSSCEEETTEEEEEEECSSS-CCEEEEEETTSCC---E
T ss_pred             HhHHHHHHHHHhhCCeEEEEEecCcCCccHHH-----HHHHhcCCeEEEeCceeeEEecCCc-eEEEEEEecCCCc---e
Confidence            47999999999999999999995334444444     3457889999999999999986433 3567776632211   1


Q ss_pred             ccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185        100 HKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      .++++|.||++.|... ..+...+ .......+.+|..++++.|+||++||++.
T Consensus       235 ~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~  288 (332)
T 3lzw_A          235 EILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICT  288 (332)
T ss_dssp             EEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEE
T ss_pred             EEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceec
Confidence            4688999999999532 1211110 11122457788889999999999999764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.14  E-value=2.2e-10  Score=100.04  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||+++++..+. +++.    +.+.|++ .||++++++.++++..+.+....+.+.+...+.   
T Consensus       154 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~---  225 (310)
T 1fl2_A          154 NSGVEAAIDLAGIVEHVTLLEFAPEMK-ADQV----LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD---  225 (310)
T ss_dssp             HHHHHHHHHHHTTBSEEEEECSSSSCC-SCHH----HHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCC---
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCcccC-ccHH----HHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCc---
Confidence            479999999999999999999953332 4433    4555666 699999999999998643332256676532111   


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccc
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                      ..++++|.||++.|... ..+.......+ ...+.+|..++++.|+||++||++..
T Consensus       226 ~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~  281 (310)
T 1fl2_A          226 IHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTV  281 (310)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSC
T ss_pred             EEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCC
Confidence            13678999999999522 11111112222 23467788888999999999996654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.13  E-value=5.1e-11  Score=108.15  Aligned_cols=146  Identities=13%  Similarity=0.047  Sum_probs=103.4

Q ss_pred             hhhhhhhhHhhhccC--CeEEEEEcc-CC--CccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc
Q psy11185         19 VDSGLECAGFLNGLG--FNATVMIRS-VP--LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE   93 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g--~~vtl~~~~-~~--l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~   93 (312)
                      +++++|+|.+|++.+  .+|+++++. .+  ++.+++.+.+.+.+.+++.||++++++++..++.+.+. ..+.+.++  
T Consensus       166 ~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~-~~v~~~~g--  242 (401)
T 3vrd_B          166 YERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA-MTVETSFG--  242 (401)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT-TEEEETTS--
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc-eEEEcCCC--
Confidence            346778888887766  689999984 44  46688999999999999999999999999988765443 46666665  


Q ss_pred             cccCCCccccccEEEEecCcchHHHHHHH-HHCCCcEEEEecc-C-CCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         94 VRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAHGRKVIVLDYV-I-PSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        94 ~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~~~~~~~ve~~-~-~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                            +++++|.++++.|..+...+... .......+.+|+. + .++.|+|||+||++...+.  ++..+.+..++..
T Consensus       243 ------~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~--pk~a~~A~~qa~v  314 (401)
T 3vrd_B          243 ------ETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPM--PKSAYSANSQAKV  314 (401)
T ss_dssp             ------CEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTS--CBSHHHHHHHHHH
T ss_pred             ------cEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCC--CchHHHHHHHHHH
Confidence                  57899999999996433322221 1112233666654 3 5889999999997754332  2455666777777


Q ss_pred             HHHHH
Q psy11185        171 IKDAV  175 (312)
Q Consensus       171 ~~~~~  175 (312)
                      +..+.
T Consensus       315 ~A~ni  319 (401)
T 3vrd_B          315 AAAAV  319 (401)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.13  E-value=1.3e-10  Score=103.94  Aligned_cols=125  Identities=11%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-------cchHHHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEee
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-------GFDQQMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKN   90 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-------~~~~~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~   90 (312)
                      .+|+|+|..|+++|.+||++++ +.+++       .+++.+.+.+.+.|++.| |++++++.+.+++..+ +...+.+.+
T Consensus       176 ~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~-~~~~v~~~~  254 (369)
T 3d1c_A          176 ESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNN-GQYHISFDS  254 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEET-TEEEEEESS
T ss_pred             cCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecC-CceEEEecC
Confidence            5889999999999999999999 46663       245777889999999997 9999999999986533 334566665


Q ss_pred             ccccccCCCccc-cccEEEEecCcch-H-HHHHHHHHCCCcEEEEe-ccCCCCCCcccccCCccccc
Q psy11185         91 VAEVRQDNTHKY-DYDLLVLGGGSGG-L-AAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGGTCVNV  153 (312)
Q Consensus        91 ~~~~~~~~~~~~-~~d~vivg~G~~g-l-~~a~~~~~~~~~~~~ve-~~~~~~~~~v~a~Gd~~~~~  153 (312)
                      +        +.+ .+|.+|+++|... . .+...+.......+.++ ..++++.|+||++||++...
T Consensus       255 g--------~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~  313 (369)
T 3d1c_A          255 G--------QSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVEND  313 (369)
T ss_dssp             S--------CCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCS
T ss_pred             C--------eEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccC
Confidence            5        334 4599999999532 2 22222222222224444 45788999999999976543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.13  E-value=1.6e-10  Score=105.25  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             hhhhhhhHhhhccC----CeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGLG----FNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g----~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      +++.+++..+.+.|    .+|+++++..+++.+++++.+.+.+.|++.||++++++.+++++.+     .+.+.++    
T Consensus       184 e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-----~v~~~~g----  254 (409)
T 3h8l_A          184 EMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH-----EIVDEKG----  254 (409)
T ss_dssp             HHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS-----EEEETTS----
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----eEEECCC----
Confidence            44444446777888    4999999955888899999999999999999999999999998532     3666665    


Q ss_pred             cCCCccccccEEEEecCcchHHHHHHH---HHCCCcEEEEeccCCC-CCCcccccCCcccccccchhhHHHHHHHHHHHH
Q psy11185         96 QDNTHKYDYDLLVLGGGSGGLAAAKEA---AAHGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAI  171 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~~gl~~a~~~---~~~~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~  171 (312)
                          +++++|.+|++.|..+.......   .......+.+|..+++ +.|+||++||++....   ++..+.+..++..+
T Consensus       255 ----~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~---~~~~~~A~~q~~~a  327 (409)
T 3h8l_A          255 ----NTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTV---PKLGYLAVMTGRIA  327 (409)
T ss_dssp             ----CEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCC---SCCHHHHHHHHHHH
T ss_pred             ----CEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCC---CcHHHHHHHHHHHH
Confidence                57899999999996433222211   1112233667777777 8999999999664311   13344455555555


Q ss_pred             HHH
Q psy11185        172 KDA  174 (312)
Q Consensus       172 ~~~  174 (312)
                      ..+
T Consensus       328 a~~  330 (409)
T 3h8l_A          328 AQH  330 (409)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.12  E-value=1.9e-10  Score=101.49  Aligned_cols=123  Identities=12%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||+++++ ++++      .+.+.+.+.+. ||++++++.+.+++.+.+....+.+.+..++.  
T Consensus       183 ~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~--  254 (338)
T 3itj_A          183 DSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE--  254 (338)
T ss_dssp             HHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTE--
T ss_pred             HHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCc--
Confidence            68999999999999999999995 5554      23445556554 99999999999998755443357776622111  


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCC-Cc-EEEEeccCCCCCCcccccCCccc
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHG-RK-VIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~-~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                       ...+++|.||++.|... ..+.......+ .. +.+++..++++.|+||++||++.
T Consensus       255 -~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~  310 (338)
T 3itj_A          255 -ETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQD  310 (338)
T ss_dssp             -EEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGC
T ss_pred             -eEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCC
Confidence             14688999999999522 11111111222 22 33357888999999999999665

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.09  E-value=6.7e-11  Score=107.42  Aligned_cols=195  Identities=15%  Similarity=0.114  Sum_probs=103.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccc--ccccchhh--------HHH--HHHHHHHH
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV--NVGCIPKK--------LMH--QAALLGEA  170 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~--~~~~~~~~--------~~~--~a~~~~~~  170 (312)
                      ++|++|||+|++|+.+|..+.+.|.+++++|+.......-.++.|+.|.  ...+.+..        ...  ........
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence            5799999999999999999999999999999865321111112233331  11111110        000  00001111


Q ss_pred             HHHHHHcCCccCC--ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--e----CCeEEEEecCCC
Q psy11185        171 IKDAVAYGWEIPN--VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--D----QHSVEATMKNGE  241 (312)
Q Consensus       171 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~----~~~~~v~~~~G~  241 (312)
                      +.....++..+..  ....++. .        ....+...+...+.+.|+++..++ +..+  +    ...+.+++.+| 
T Consensus        84 ~~~~~~~Gi~~~~~~~g~~~p~-~--------~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-  153 (401)
T 2gqf_A           84 ISLVAEQGITYHEKELGQLFCD-E--------GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-  153 (401)
T ss_dssp             HHHHHHTTCCEEECSTTEEEET-T--------CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-
T ss_pred             HHHHHhCCCceEECcCCEEccC-C--------CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-
Confidence            2222233432211  0001110 0        111222234445666789987665 3322  3    34577777665 


Q ss_pred             eEEEEcCeEEEccCCCCC--------------------CCCCCCCCcceecccc-c-cCC--CCCCCeEEEEc-------
Q psy11185        242 KKTLTAENILIATGGRPN--------------------YPDIPGAKEHCISSDD-I-FSL--EKPPGKTLVVG-------  290 (312)
Q Consensus       242 ~~~i~ad~vVlAtG~~p~--------------------~p~~~g~~~~~~~~~~-~-~~~--~~~~~~v~VvG-------  290 (312)
                        ++.||.||+|||+.+.                    .|..|+...+..+..+ + ..+  ...+.++.|+|       
T Consensus       154 --~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~  231 (401)
T 2gqf_A          154 --QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQ  231 (401)
T ss_dssp             --EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEE
T ss_pred             --EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCceEEeC
Confidence              6999999999998773                    2444554444333332 3 222  22345676669       


Q ss_pred             --------CchhhHHHHHHhhcCceeee
Q psy11185        291 --------AGYIGKLETWDSNSGCGNVT  310 (312)
Q Consensus       291 --------~G~sa~~~a~~l~~~~~~V~  310 (312)
                              +|+.+++.+..+..+ ..|+
T Consensus       232 ~l~t~~g~sG~~~l~~s~~~~~~-~~~~  258 (401)
T 2gqf_A          232 LLFTHRGISGPAVLQISNYWQPT-ESVE  258 (401)
T ss_dssp             EEECSSEEESHHHHHHTTTCCTT-CCEE
T ss_pred             EEEECCCccHHHHHHHHHHHhcC-CEEE
Confidence                    899998888776553 3444

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.09  E-value=3.8e-10  Score=98.81  Aligned_cols=143  Identities=13%  Similarity=0.074  Sum_probs=93.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|.+.|.+||+++++ ++++  +++   .+.+.+++.||++++++.+.+++.+ +....+.+.+...++   
T Consensus       164 ~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~g~---  234 (323)
T 3f8d_A          164 DSALEGAEILSSYSTKVYLIHRRDTFKA--QPI---YVETVKKKPNVEFVLNSVVKEIKGD-KVVKQVVVENLKTGE---  234 (323)
T ss_dssp             HHHHHHHHHHHHHSSEEEEECSSSSCCS--CHH---HHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEETTTCC---
T ss_pred             HHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHH---HHHHHHhCCCcEEEeCCEEEEEecc-CceeEEEEEECCCCc---
Confidence            47999999999999999999994 6655  332   2233334569999999999999864 333457776521111   


Q ss_pred             CccccccEEEEecCcchH-HHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGGL-AAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~gl-~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ...+++|.||++.|.... .+...+ ...+ ...+.+|..++++.++||++||++...  .+......+..++.....
T Consensus       235 ~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~  310 (323)
T 3f8d_A          235 IKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAAT  310 (323)
T ss_dssp             EEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCC--CcccceeehhhHHHHHHH
Confidence            136889999999996332 332222 1212 234677888899999999999965432  112334444555554444

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.09  E-value=1e-10  Score=106.41  Aligned_cols=140  Identities=22%  Similarity=0.243  Sum_probs=84.5

Q ss_pred             cEEEEecCcchHHHHHHHHH---CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      +++|||+|++|+.+|..+.+   .+.+++++|+.....            ..+..+                ....+.. 
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~------------~~~~~~----------------~~~~~~~-   53 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSY------------FRPALP----------------HVAIGVR-   53 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEE------------ECCSSC----------------CCCSSCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCce------------eccchh----------------hcccCCc-
Confidence            79999999999999999998   788999999754210            000000                0000000 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC--eEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH--SVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~--~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                       .....                  ...+...+.+.+++++.+.+..++..  .+.+...+++..++.||+||+|||+.|+
T Consensus        54 -~~~~~------------------~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~  114 (409)
T 3h8l_A           54 -DVDEL------------------KVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA  114 (409)
T ss_dssp             -CCCCE------------------EEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred             -CHHHH------------------HHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence             00001                  01122345567899988776666544  4444443333456999999999999999


Q ss_pred             CCCCCCCCccee---ccccccCC----CCCCCeEEEEcCc
Q psy11185        260 YPDIPGAKEHCI---SSDDIFSL----EKPPGKTLVVGAG  292 (312)
Q Consensus       260 ~p~~~g~~~~~~---~~~~~~~~----~~~~~~v~VvG~G  292 (312)
                      .|+++|.+....   +..+...+    ....++++|||+|
T Consensus       115 ~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G  154 (409)
T 3h8l_A          115 TELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSG  154 (409)
T ss_dssp             GGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEEC
T ss_pred             ccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            888998864322   22222211    1223667799999

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.08  E-value=3e-10  Score=99.14  Aligned_cols=140  Identities=14%  Similarity=0.043  Sum_probs=91.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--eccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~~   97 (312)
                      .+|+|+|..|.++|.+||+++++..++. ++++   +.+.+++.||++++++.+.+++.+.+....+.+.  +++.    
T Consensus       157 ~~~~e~a~~l~~~g~~v~~~~~~~~~~~-~~~~---~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~----  228 (315)
T 3r9u_A          157 DTALEEALYLANICSKIYLIHRRDEFRA-APST---VEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSI----  228 (315)
T ss_dssp             HHHHHHHHHHHTTSSEEEEECSSSSCBS-CHHH---HHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCE----
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCC-CHHH---HHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCe----
Confidence            4899999999999999999999533333 3333   3444568899999999999998654332245555  3311    


Q ss_pred             CCccccccEEEEecCcch-HHHHHH-----HHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKE-----AAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA  170 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~-----~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~  170 (312)
                        .++++|.||++.|... ..+...     ....+. ..+.+|..++|+.|+||++||++...+    .....+..++..
T Consensus       229 --~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~----~~~~~A~~~g~~  302 (315)
T 3r9u_A          229 --RDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP----KQVICAAGDGAV  302 (315)
T ss_dssp             --EEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC----CCHHHHHHHHHH
T ss_pred             --EEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch----hhhhhHHhhHHH
Confidence              3688999999999522 111111     011222 347778889999999999999654322    233444444444


Q ss_pred             HHH
Q psy11185        171 IKD  173 (312)
Q Consensus       171 ~~~  173 (312)
                      ...
T Consensus       303 aa~  305 (315)
T 3r9u_A          303 AAL  305 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.07  E-value=3.9e-10  Score=98.94  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=91.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++|.+||+++++..+. .++.    +.+.+++.||++++++.++++..+.+....+.+.+...+.   .
T Consensus       165 ~~g~e~a~~l~~~g~~V~~i~~~~~~~-~~~~----l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~---~  236 (319)
T 3cty_A          165 NSGAIAAISMSEYVKNVTIIEYMPKYM-CENA----YVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGE---E  236 (319)
T ss_dssp             HHHHHHHHHHTTTBSEEEEECSSSSCC-SCHH----HHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCC---E
T ss_pred             HHHHHHHHHHHhhCCcEEEEEcCCccC-CCHH----HHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCc---e
Confidence            579999999999999999999953233 2333    3455667899999999999998643222356665311110   1


Q ss_pred             ccccccEEEEecCcchH-HHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGGL-AAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl-~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ..+++|.||++.|.... .+...+ ...+ ...+.+|+.++++.|+||++||++....    ...+.+..++..+..+
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~  310 (319)
T 3cty_A          237 KLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF----AQIASAVGDGCKAALS  310 (319)
T ss_dssp             EEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----CCHHHHHHHHHHHHHH
T ss_pred             EEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch----hhHHHHHHHHHHHHHH
Confidence            36899999999995321 111111 1112 1346778888999999999999654421    2344455555555443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.06  E-value=4e-10  Score=98.43  Aligned_cols=143  Identities=17%  Similarity=0.125  Sum_probs=91.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHh-ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMA-EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~-~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||+++++..++ .++++    .+.+. +.||++++++.+.++..+++....+.+.+...+.   
T Consensus       153 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~----~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~---  224 (311)
T 2q0l_A          153 DTAVEEAIYLANICKKVYLIHRRDGFR-CAPIT----LEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNE---  224 (311)
T ss_dssp             HHHHHHHHHHHTTSSEEEEECSSSSCC-SCHHH----HHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCC---
T ss_pred             HHHHHHHHHHHhcCCEEEEEeeCCccC-CCHHH----HHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCc---
Confidence            489999999999999999999953333 34443    34444 4799999999999997643322246665311110   


Q ss_pred             CccccccEEEEecCcch-HHHHHHH-----HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEA-----AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAI  171 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~-----~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~  171 (312)
                      ..++++|.||++.|... ..+...+     ...+ ...+.+|..++++.|+||++||++...+    .....+..++..+
T Consensus       225 ~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----~~~~~A~~~g~~a  300 (311)
T 2q0l_A          225 KRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP----KQVVCAASDGATA  300 (311)
T ss_dssp             EEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----CCHHHHHHHHHHH
T ss_pred             eEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch----HHHHHHHHhHHHH
Confidence            13679999999999522 1111111     1111 2347778888999999999999765422    2344455555554


Q ss_pred             HHH
Q psy11185        172 KDA  174 (312)
Q Consensus       172 ~~~  174 (312)
                      ..+
T Consensus       301 a~~  303 (311)
T 2q0l_A          301 ALS  303 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.04  E-value=5e-10  Score=104.42  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ..+|++|||+|++|+.+|..+.+. .+++++|+...        .|+.+.....                   ..+++. 
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~--------~GG~~~~~~~-------------------~~~g~~-  157 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGW--------LGGDMWLKGI-------------------KQEGFN-  157 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSS--------SSCSGGGTCS-------------------EETTTT-
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCC--------CCCeeecccc-------------------ccCCCC-
Confidence            357999999999999999999988 89999997542        1221111000                   001100 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEe-cCCCeEEEEcCeEEEccCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATM-KNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~-~~G~~~~i~ad~vVlAtG~~  257 (312)
                           .  +...+.           ..+...+ ..++++...+ +..+  +...+.+.. .+++...+.||+||+|||+.
T Consensus       158 -----~--~~~~~~-----------~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~  218 (493)
T 1y56_A          158 -----K--DSRKVV-----------EELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAI  218 (493)
T ss_dssp             -----E--EHHHHH-----------HHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEE
T ss_pred             -----C--CHHHHH-----------HHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCC
Confidence                 0  111111           1111223 5577765443 2211  223344433 45544579999999999999


Q ss_pred             CCCCCCCCCCcc-eeccccccC----C-CCCCCeEEEEcCchhhHH
Q psy11185        258 PNYPDIPGAKEH-CISSDDIFS----L-EKPPGKTLVVGAGYIGKL  297 (312)
Q Consensus       258 p~~p~~~g~~~~-~~~~~~~~~----~-~~~~~~v~VvG~G~sa~~  297 (312)
                      |+.|+++|.+.. .++..++..    . ...+++++|||+|.+|++
T Consensus       219 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle  264 (493)
T 1y56_A          219 DSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI  264 (493)
T ss_dssp             ECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH
T ss_pred             ccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH
Confidence            999999988643 333333321    1 134578999999999997

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.03  E-value=1.2e-09  Score=96.05  Aligned_cols=142  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHH-hccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEM-AEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++||+++++..+. .++.+    .+.+ ++.||+++++++++++..+ +....+.+.+...+.   
T Consensus       162 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~----~~~l~~~~gv~i~~~~~v~~i~~~-~~v~~v~~~~~~~g~---  232 (325)
T 2q7v_A          162 DAAVEEGMFLTKFADEVTVIHRRDTLR-ANKVA----QARAFANPKMKFIWDTAVEEIQGA-DSVSGVKLRNLKTGE---  232 (325)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCC-SCHHH----HHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEETTTCC---
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCCcCC-cchHH----HHHHHhcCCceEecCCceEEEccC-CcEEEEEEEECCCCc---
Confidence            489999999999999999999953232 23333    3334 4469999999999999863 222256665311110   


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ..++++|.||++.|... ..+...+...+ ...+.+|+.++++.|+||++||++...+    .....+..++..+..+
T Consensus       233 ~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~  306 (325)
T 2q7v_A          233 VSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY----RQLATSVGAGTRAAMM  306 (325)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC----CCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH----HHHHHHHHHHHHHHHH
Confidence            13678999999999522 11111112222 2346778888999999999999654422    2344455555554443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.03  E-value=1e-09  Score=96.68  Aligned_cols=125  Identities=13%  Similarity=0.066  Sum_probs=81.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC--CeeEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD--GKLKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~--~~~~v~~~~~~~~~~   96 (312)
                      .+|+|+|..|+++|.+||+++++ .++.  .+.+   ..+.+++.||++++++.+.+++.+.+  ....+.+.+...+. 
T Consensus       169 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~-  242 (333)
T 1vdc_A          169 DSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGD-  242 (333)
T ss_dssp             HHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCC-
T ss_pred             hHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCc-
Confidence            58999999999999999999995 4432  2222   12445678999999999999986543  22246665421111 


Q ss_pred             CCCccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEecc-CCCCCCcccccCCcccc
Q psy11185         97 DNTHKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYV-IPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~-~~~~~~~v~a~Gd~~~~  152 (312)
                        ..++++|.||++.|... ..+.......+ ...+.+|.. ++|+.|+||++||++..
T Consensus       243 --~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~  299 (333)
T 1vdc_A          243 --VSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDK  299 (333)
T ss_dssp             --EEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCS
T ss_pred             --eEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCC
Confidence              14679999999999521 11111111112 233556664 58999999999996544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.02  E-value=9.1e-10  Score=103.35  Aligned_cols=124  Identities=14%  Similarity=0.110  Sum_probs=85.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|.+||++++. +++.  +    ..+.+.|++ .||++++++.++++..+.+....+.+.+...+.  
T Consensus       365 ~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~--  436 (521)
T 1hyu_A          365 NSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD--  436 (521)
T ss_dssp             HHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCC--
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCc--
Confidence            58999999999999999999995 5543  3    345666777 699999999999998643332256666532111  


Q ss_pred             CCccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccc
Q psy11185         98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                       ...+++|.||++.|... ..........+ ...+.+|..++|+.|+||++||++..
T Consensus       437 -~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~  492 (521)
T 1hyu_A          437 -IHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTV  492 (521)
T ss_dssp             -EEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCC
T ss_pred             -eEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCC
Confidence             13678999999999521 11111112222 23477788889999999999996544

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.01  E-value=5e-09  Score=87.77  Aligned_cols=139  Identities=13%  Similarity=0.028  Sum_probs=91.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-C-----------------CCccc-------hHHHHHHHHHHHhcc-ceEEEeecee
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-V-----------------PLRGF-------DQQMAKLICEEMAEG-GVHFLHKCLP   73 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~-----------------~l~~~-------~~~~~~~~~~~l~~~-gi~~~~~~~v   73 (312)
                      ..|+++|..|+++|.+|+|+|+. .                 +++.+       ...+.+++.+.+++. ||+++ ++++
T Consensus        13 ~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~gv~i~-~~~v   91 (232)
T 2cul_A           13 FSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLF-QATA   91 (232)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEEEE-ECCE
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCCcEEE-EeEE
Confidence            47999999999999999999984 1                 12222       136778888888886 99998 6789


Q ss_pred             eEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc-----------------ch----HHHHHHHHHCCCcEEEE
Q psy11185         74 LSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS-----------------GG----LAAAKEAAAHGRKVIVL  132 (312)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~-----------------~g----l~~a~~~~~~~~~~~~v  132 (312)
                      +++..+++....+.+.++        ..+++|.||++.|.                 .|    ..++..+.+.+..+--.
T Consensus        92 ~~i~~~~~~v~~v~~~~g--------~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~  163 (232)
T 2cul_A           92 TGLLLEGNRVVGVRTWEG--------PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVER  163 (232)
T ss_dssp             EEEEEETTEEEEEEETTS--------CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEEE
T ss_pred             EEEEEeCCEEEEEEECCC--------CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEcc
Confidence            988764332124555443        46899999999996                 11    24566666665532111


Q ss_pred             --------------------ec-------cCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        133 --------------------DY-------VIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       133 --------------------e~-------~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                                          +.       ...|+.|++|++||++ ..+     ....+..+++.+..
T Consensus       164 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g-----~~~~~~~~g~~~a~  225 (232)
T 2cul_A          164 EGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG-----DYARMSEEGKRLAE  225 (232)
T ss_dssp             EEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC-----CHHHHHHHHHHHHH
T ss_pred             ccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc-----cHHHHHHHHHHHHH
Confidence                                10       1126899999999977 544     22334445554444

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.00  E-value=1.1e-09  Score=100.64  Aligned_cols=144  Identities=13%  Similarity=0.100  Sum_probs=92.9

Q ss_pred             hhhh----HhhhccCCe-----EEEEEcc-CC----CccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE
Q psy11185         23 LECA----GFLNGLGFN-----ATVMIRS-VP----LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY   88 (312)
Q Consensus        23 ~E~A----~~l~~~g~~-----vtl~~~~-~~----l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~   88 (312)
                      +|+|    ..++++|.+     ||++++. .+    |+.+. ++.+.+.+.|++.||++++++.+++++.  +   .+.+
T Consensus       168 ~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~-~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~---~v~~  241 (437)
T 3sx6_A          168 YEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVG-DSKGILTKGLKEEGIEAYTNCKVTKVED--N---KMYV  241 (437)
T ss_dssp             HHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCT-THHHHHHHHHHHTTCEEECSEEEEEEET--T---EEEE
T ss_pred             HHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcch-HHHHHHHHHHHHCCCEEEcCCEEEEEEC--C---eEEE
Confidence            6666    777788875     9999984 55    34333 4788899999999999999999999863  2   2333


Q ss_pred             ee----ccccccCCCccccccEEEEecCcchHHHHHH--HHHCCCcEEEEeccCCC-CCCcccccCCccccccc------
Q psy11185         89 KN----VAEVRQDNTHKYDYDLLVLGGGSGGLAAAKE--AAAHGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGC------  155 (312)
Q Consensus        89 ~~----~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~--~~~~~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~------  155 (312)
                      .+    +...   ...++++|.++++.|..+......  ........+.+|..+++ +.|+||++||++...+.      
T Consensus       242 ~~~~~~g~~~---~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~  318 (437)
T 3sx6_A          242 TQVDEKGETI---KEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVP  318 (437)
T ss_dssp             EEECTTSCEE---EEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSC
T ss_pred             EecccCCccc---cceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCC
Confidence            32    1100   015689999999988543321111  01112234677777887 89999999997654321      


Q ss_pred             -chhhHHHHHHHHHHHHHHHH
Q psy11185        156 -IPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       156 -~~~~~~~~a~~~~~~~~~~~  175 (312)
                       ..++..+.+..++..+..+.
T Consensus       319 ~~~pk~~~~A~~qg~~aA~ni  339 (437)
T 3sx6_A          319 TGAPKTGYMIESMVSAAVHNI  339 (437)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH
Confidence             11245556666666666554

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.97  E-value=5e-10  Score=96.89  Aligned_cols=129  Identities=13%  Similarity=0.020  Sum_probs=87.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+|+|+|..|+++| +||+++++..  .++    +.+.+.|++.||+++. +.+.+++.  ++  .+.+.++        
T Consensus       151 ~~~~e~a~~l~~~g-~v~~v~~~~~--~~~----~~~~~~l~~~gv~i~~-~~v~~i~~--~~--~v~~~~g--------  210 (297)
T 3fbs_A          151 PMAIHHALMLPDWG-ETTFFTNGIV--EPD----ADQHALLAARGVRVET-TRIREIAG--HA--DVVLADG--------  210 (297)
T ss_dssp             TTHHHHHHHGGGTS-EEEEECTTTC--CCC----HHHHHHHHHTTCEEEC-SCEEEEET--TE--EEEETTS--------
T ss_pred             ccHHHHHHHhhhcC-cEEEEECCCC--CCC----HHHHHHHHHCCcEEEc-ceeeeeec--CC--eEEeCCC--------
Confidence            58899999999999 9999998432  223    3346778889999985 88888863  22  5667665        


Q ss_pred             ccccccEEEEecCcc-hHHHHHHH-HHCC---Cc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSG-GLAAAKEA-AAHG---RK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       100 ~~~~~d~vivg~G~~-gl~~a~~~-~~~~---~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      .++++|.||++.|.. ...+...+ ...+   .. .+.+|..++|+.|+||++||++...     ...+.+..++.....
T Consensus       211 ~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~  285 (297)
T 3fbs_A          211 RSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA-----GSVALAVGDGAMAGA  285 (297)
T ss_dssp             CEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT-----CCHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch-----HHHHHHHHhHHHHHH
Confidence            568999999999953 11222222 1111   12 5788888999999999999965432     233444444444443

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.96  E-value=1.5e-09  Score=95.89  Aligned_cols=124  Identities=13%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|.+||+++|+ +++..  +.+   ..+.+++.||++++++.+++++.+. +...+.+.+...+   .
T Consensus       165 ~~g~e~a~~l~~~g~~V~l~~~~~~~~~~--~~~---~~~~~~~~gV~v~~~~~v~~i~~~~-~~~~v~~~~~~~g---~  235 (335)
T 2a87_A          165 DSAMEEATFLTRFARSVTLVHRRDEFRAS--KIM---LDRARNNDKIRFLTNHTVVAVDGDT-TVTGLRVRDTNTG---A  235 (335)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCSSC--TTH---HHHHHHCTTEEEECSEEEEEEECSS-SCCEEEEEEETTS---C
T ss_pred             HHHHHHHHHHHHhCCeEEEEEcCCcCCcc--HHH---HHHHhccCCcEEEeCceeEEEecCC-cEeEEEEEEcCCC---c
Confidence            48999999999999999999995 55322  111   1234567899999999999997543 2224666532111   0


Q ss_pred             CccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEec-cCCCCCCcccccCCcccc
Q psy11185         99 THKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDY-VIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~-~~~~~~~~v~a~Gd~~~~  152 (312)
                      ...+++|.||++.|... ..+.......+ ...+.+|. .++++.|+||++||++..
T Consensus       236 ~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~  292 (335)
T 2a87_A          236 ETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDR  292 (335)
T ss_dssp             CEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCC
T ss_pred             eEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCc
Confidence            14689999999999521 11111111122 23455665 468999999999996543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.96  E-value=1.6e-09  Score=99.32  Aligned_cols=133  Identities=15%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             CeEEEEEccCCC----ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEE
Q psy11185         34 FNATVMIRSVPL----RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVL  109 (312)
Q Consensus        34 ~~vtl~~~~~~l----~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~viv  109 (312)
                      .+|++++....|    +..++..++++++.|+++||++++++.+++++.   +  .+.+.+..+    ...++++|.+||
T Consensus       180 v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~---~--~~~~~~~~g----~~~~i~~d~vi~  250 (430)
T 3hyw_A          180 VPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP---D--KVIYEDLNG----NTHEVPAKFTMF  250 (430)
T ss_dssp             CCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS---S--EEEEECTTS----CEEEEECSEEEE
T ss_pred             ceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC---C--ceEEEeeCC----CceEeecceEEE
Confidence            478999874333    345677888999999999999999999999853   2  344443221    115789999999


Q ss_pred             ecCcchHHHHHHH---HHC-CCcEEEEeccCC-CCCCcccccCCcccccc-------cchhhHHHHHHHHHHHHHHHH
Q psy11185        110 GGGSGGLAAAKEA---AAH-GRKVIVLDYVIP-SPQGTTWGLGGTCVNVG-------CIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       110 g~G~~gl~~a~~~---~~~-~~~~~~ve~~~~-~~~~~v~a~Gd~~~~~~-------~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      +.|..+.......   ... ....+++|+.++ ++.|+|||+|||+...+       ...++..+.+..++..+.+|.
T Consensus       251 ~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni  328 (430)
T 3hyw_A          251 MPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNI  328 (430)
T ss_dssp             ECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             eccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHH
Confidence            9996543332221   111 223577787776 89999999999765432       112345666777777777664

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.90  E-value=5e-09  Score=105.74  Aligned_cols=127  Identities=18%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeec---c
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNV---A   92 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~---~   92 (312)
                      ++|+|+|..+.++|. +||+++| + .+++.+++++     +.++++||++++++.+.++... ++.+ .+.+.+.   +
T Consensus       342 ~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~  415 (1025)
T 1gte_A          342 DTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDE  415 (1025)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECT
T ss_pred             hHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcC
Confidence            589999999999996 8999999 4 5778888774     4567889999999999998753 3333 3444310   0


Q ss_pred             ccc----cCCCccccccEEEEecCcch--HHHHHHH--HHCCC-cEEEEec-cCCCCCCcccccCCcccc
Q psy11185         93 EVR----QDNTHKYDYDLLVLGGGSGG--LAAAKEA--AAHGR-KVIVLDY-VIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus        93 ~~~----~~~~~~~~~d~vivg~G~~g--l~~a~~~--~~~~~-~~~~ve~-~~~~~~~~v~a~Gd~~~~  152 (312)
                      .++    .+...++++|.||++.|...  ..+...+  .+.+. ..+.+|. .++|+.|+|||+||+...
T Consensus       416 ~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~  485 (1025)
T 1gte_A          416 TGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGM  485 (1025)
T ss_dssp             TSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCS
T ss_pred             CCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCC
Confidence            000    00013689999999999632  3333222  12222 2366665 788999999999996543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.89  E-value=2e-09  Score=93.81  Aligned_cols=116  Identities=9%  Similarity=0.056  Sum_probs=77.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT   99 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (312)
                      .+++|+|..++++|.+||+++++..+.       +.+.+.|++.|++++.++ +..+..++.....+.+.++        
T Consensus       157 ~~~~e~a~~~~~~~~~v~i~~~~~~~~-------~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g--------  220 (304)
T 4fk1_A          157 DHTLHMTKLVYNWSTDLVIATNGNELS-------QTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSG--------  220 (304)
T ss_dssp             HHHHHHHHHHTTTCSCEEEECSSCCCC-------HHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTS--------
T ss_pred             chhhhHHHHHHhCCceEEEEeccccch-------hhhhhhhhccceeEeeee-EEEeecCCCeeeeeecccc--------
Confidence            467999999999999999999853332       223567888999998765 6666543322235666655        


Q ss_pred             ccccccEEEEecC-cchHH-HHHHHHHCCCc-EEEEeccCCCCCCcccccCCccc
Q psy11185        100 HKYDYDLLVLGGG-SGGLA-AAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus       100 ~~~~~d~vivg~G-~~gl~-~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      ..+++|.+|+.+| ..... +.....+.+.+ .+.+|++++|+.|+|||+||++.
T Consensus       221 ~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~  275 (304)
T 4fk1_A          221 LRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTT  275 (304)
T ss_dssp             CEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHH
T ss_pred             ceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCC
Confidence            4667777776665 22212 22111222322 37789999999999999999654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.88  E-value=1.2e-09  Score=100.64  Aligned_cols=142  Identities=18%  Similarity=0.210  Sum_probs=88.7

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEcc-CC-CccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee-----
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIRS-VP-LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN-----   90 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~~-~~-l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~-----   90 (312)
                      ++|+|+|..+.++|. +||+++|+ ++ ++..+.+     .+.++++||++++++.+.++..+  +.+ .+.+..     
T Consensus       274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~--g~v~~v~~~~~~~~~  346 (456)
T 2vdc_G          274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTGD--TVVTGVRAVRIHLGV  346 (456)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEEE--EEEETTEEEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeCC--CcEEEEEEEEEEecc
Confidence            579999999999998 59999994 54 7777655     35577889999999999998742  221 112210     


Q ss_pred             -ccccc------cCCCccccccEEEEecCcch--HH-HHHHH-HHCCC-cEEEEecc-CCCCCCcccccCCcccccccch
Q psy11185         91 -VAEVR------QDNTHKYDYDLLVLGGGSGG--LA-AAKEA-AAHGR-KVIVLDYV-IPSPQGTTWGLGGTCVNVGCIP  157 (312)
Q Consensus        91 -~~~~~------~~~~~~~~~d~vivg~G~~g--l~-~a~~~-~~~~~-~~~~ve~~-~~~~~~~v~a~Gd~~~~~~~~~  157 (312)
                       ...++      .+...++++|.||++.|...  .. +...+ .+.+. ..+.+|.. ++|+.++|||+||+....    
T Consensus       347 ~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~----  422 (456)
T 2vdc_G          347 ADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA----  422 (456)
T ss_dssp             EEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC----
T ss_pred             cCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc----
Confidence             00000      01114689999999999633  11 11111 11122 23666665 789999999999965432    


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy11185        158 KKLMHQAALLGEAIKD  173 (312)
Q Consensus       158 ~~~~~~a~~~~~~~~~  173 (312)
                       .....+..+++....
T Consensus       423 -~~v~~A~~~G~~aA~  437 (456)
T 2vdc_G          423 -SLVVWAIRDGRDAAE  437 (456)
T ss_dssp             -CSHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHH
Confidence             233445555554444

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.87  E-value=2.6e-08  Score=94.59  Aligned_cols=174  Identities=18%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchh-hHHHHHHHH---HHHHHHHHHcC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK-KLMHQAALL---GEAIKDAVAYG  178 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~-~~~~~a~~~---~~~~~~~~~~~  178 (312)
                      ++|+||||+|++|+.+|..+.+.|.+++++|.....     ++...|....+.... .........   ...+.+.....
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~-----iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~  102 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDT-----LGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQ  102 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG-----TTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEE
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccc-----cccccccccccchhhHHHHHHHHHhccHHHHHhhhcccc
Confidence            689999999999999999999999999999975311     000111000000000 000000000   00011111010


Q ss_pred             CccC--Cccc------cccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEe--eCCe-EEEEecCCCeEEEE
Q psy11185        179 WEIP--NVKS------VQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFI--DQHS-VEATMKNGEKKTLT  246 (312)
Q Consensus       179 ~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~--~~~~-~~v~~~~G~~~~i~  246 (312)
                      +...  ...+      ...|...+           ...+...+.. .+++++...+..+  +... +.+.+.+|  .++.
T Consensus       103 f~~l~~~kgpav~~~r~~~Dr~~~-----------~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG--~~I~  169 (651)
T 3ces_A          103 FRILNASKGPAVRATRAQADRVLY-----------RQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMG--LKFR  169 (651)
T ss_dssp             EEEESTTSCGGGCEEEEEECHHHH-----------HHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTS--EEEE
T ss_pred             hhhhhcccCcccccchhhCCHHHH-----------HHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCC--CEEE
Confidence            0000  0000      01222222           2223344555 6899877666555  3333 45777788  6899


Q ss_pred             cCeEEEccCCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeee
Q psy11185        247 AENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVT  310 (312)
Q Consensus       247 ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~  310 (312)
                      ||.||+|||+++..+.++|...+.            +++   +| |.+|.+.+..|...+..|+
T Consensus       170 Ad~VVLATGt~s~~~~i~G~~~~~------------~gr---iG-g~~a~eLA~~L~~lG~~v~  217 (651)
T 3ces_A          170 AKAVVLTVGTFLDGKIHIGLDNYS------------GGR---AG-DPPSIPLSRRLRELPLRVG  217 (651)
T ss_dssp             EEEEEECCSTTTCCEEECC-----------------------------CCHHHHHHHTTTCCEE
T ss_pred             CCEEEEcCCCCccCccccCcccCC------------CCC---cc-chhhhHHHHHHHhcCCeEE
Confidence            999999999999888888875321            333   56 7788888887777666654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.83  E-value=1.1e-08  Score=99.19  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             hhhhhhHhhhccCCeEEEEEc-cCCCccch-HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccC
Q psy11185         21 SGLECAGFLNGLGFNATVMIR-SVPLRGFD-QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQD   97 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~-~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~   97 (312)
                      +|+|+|..|+++|++||++++ +.+++.++ +.+...+.+.|++.||++++++.+++++.+  + +.+... .++     
T Consensus       536 ~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~-~~v~~~~~~~-----  607 (690)
T 3k30_A          536 LGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG--G-VTVRDTYASI-----  607 (690)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT--E-EEEEETTTCC-----
T ss_pred             cHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC--e-EEEEEccCCe-----
Confidence            579999999999999999999 47776543 666788889999999999999999998632  2 233322 111     


Q ss_pred             CCccccccEEEEecCcc-hHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185         98 NTHKYDYDLLVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus        98 ~~~~~~~d~vivg~G~~-gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                       ..++++|.||+++|.. ...+...+...+.         +++.++||++||++.. .     ....+..++..+..+.
T Consensus       608 -~~~i~aD~VV~A~G~~p~~~l~~~l~~~~~---------~t~~~~VyaiGD~~~~-~-----~~~~A~~~g~~aa~~i  670 (690)
T 3k30_A          608 -ERELECDAVVMVTARLPREELYLDLVARRD---------AGEIASVRGIGDAWAP-G-----TIAAAVWSGRRAAEEF  670 (690)
T ss_dssp             -EEEEECSEEEEESCEEECCHHHHHHHHHHH---------HTSCSEEEECGGGTSC-B-----CHHHHHHHHHHHHHHT
T ss_pred             -EEEEECCEEEECCCCCCChHHHHHHhhhhc---------ccCCCCEEEEeCCCch-h-----hHHHHHHHHHHHHHHH
Confidence             1468999999999952 2222222222111         6889999999996542 2     2233677777777665

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.83  E-value=8.7e-09  Score=100.46  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCcc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--ecccc-
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEV-   94 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~-   94 (312)
                      .+|+|+|..|+++|++|||+++..+++.  ++.. ...+.+.|+++||++++++.+++++.  ++ +.+...  ++... 
T Consensus       540 ~~g~e~A~~l~~~G~~Vtlv~~~~l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~-v~~~~~~~~~~~~~  615 (729)
T 1o94_A          540 FMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GR-MEIYNIWGDGSKRT  615 (729)
T ss_dssp             SHHHHHHHHHHHTTCEEEEEESSCTTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TE-EEEEETTCSCSCCC
T ss_pred             chHHHHHHHHHHcCCEEEEEeccccccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--Ce-EEEEEecCCceEEe
Confidence            4689999999999999999999545542  3333 46778888999999999999999863  22 333321  11100 


Q ss_pred             --------c--cCCCccccccEEEEecCcc-hHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHH
Q psy11185         95 --------R--QDNTHKYDYDLLVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ  163 (312)
Q Consensus        95 --------~--~~~~~~~~~d~vivg~G~~-gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~  163 (312)
                              +  .....++++|.||++.|.. ...+...+...      ++..++|+.++||++||++. .     .....
T Consensus       616 ~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~~------vd~~~~t~~~~VyAiGD~~~-~-----~~~~~  683 (729)
T 1o94_A          616 YRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKAR------ESEWAENDIKGIYLIGDAEA-P-----RLIAD  683 (729)
T ss_dssp             CCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHHT------GGGTGGGTCCEEEECGGGTS-C-----CCHHH
T ss_pred             cccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhhh------cccccccCCCCeEEEeCccc-h-----hhHHH
Confidence                    0  0001238999999999952 22233233221      46677889999999999653 2     12334


Q ss_pred             HHHHHHHHHHHH
Q psy11185        164 AALLGEAIKDAV  175 (312)
Q Consensus       164 a~~~~~~~~~~~  175 (312)
                      +..++..+..+.
T Consensus       684 A~~~G~~aA~~i  695 (729)
T 1o94_A          684 ATFTGHRVAREI  695 (729)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            666677666654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.82  E-value=5.9e-09  Score=96.27  Aligned_cols=149  Identities=13%  Similarity=0.018  Sum_probs=90.7

Q ss_pred             hhhhhhhHhhhcc--CCeEEEEEcc-CCCcc--------------------chHHHHHHHHHHHhc--------------
Q psy11185         20 DSGLECAGFLNGL--GFNATVMIRS-VPLRG--------------------FDQQMAKLICEEMAE--------------   62 (312)
Q Consensus        20 ~ig~E~A~~l~~~--g~~vtl~~~~-~~l~~--------------------~~~~~~~~~~~~l~~--------------   62 (312)
                      .+|+|+|..|++.  |.+||+++|+ .+++.                    ++++.+..+.+.+..              
T Consensus       237 ~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (463)
T 3s5w_A          237 QSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERI  316 (463)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHH
T ss_pred             HhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHH
Confidence            5899999999999  9999999994 66442                    233334444444333              


Q ss_pred             ------------cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH---HHHHHHHHCCC
Q psy11185         63 ------------GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL---AAAKEAAAHGR  127 (312)
Q Consensus        63 ------------~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl---~~a~~~~~~~~  127 (312)
                                  .||++++++.|++++..+ +.+.+.+.+...+..   .++++|.||+++|...-   .....+... .
T Consensus       317 ~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~-~~~~v~~~~~~~g~~---~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~-~  391 (463)
T 3s5w_A          317 YGVFYRQKVSGIPRHAFRCMTTVERATATA-QGIELALRDAGSGEL---SVETYDAVILATGYERQLHRQLLEPLAEY-L  391 (463)
T ss_dssp             HHHHHHHHHHCCCCSEEETTEEEEEEEEET-TEEEEEEEETTTCCE---EEEEESEEEECCCEECCC-CTTTGGGGGG-B
T ss_pred             HHHHHHHHhcCCCCeEEEeCCEEEEEEecC-CEEEEEEEEcCCCCe---EEEECCEEEEeeCCCCCCccchhHHHHHH-h
Confidence                        599999999999998644 446677764322111   35899999999995221   111111111 0


Q ss_pred             cEEEEeccCCCC-----CCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185        128 KVIVLDYVIPSP-----QGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD  173 (312)
Q Consensus       128 ~~~~ve~~~~~~-----~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~  173 (312)
                      ..+.++...++.     .++||++|||....+...+.+...+..+...+..
T Consensus       392 g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~  442 (463)
T 3s5w_A          392 GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGS  442 (463)
T ss_dssp             C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHH
T ss_pred             CCcccCcccccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHH
Confidence            345666655543     4679999996544443333444455555555444

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.72  E-value=6.2e-08  Score=97.16  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee--cc--c
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN--VA--E   93 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~--~~--~   93 (312)
                      .+|+|+|..|+++|.+|||++++ ++++.         .+.+++.||++++++.+.+++.++++.+ .+.+.+  ..  .
T Consensus       294 ~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~---------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~  364 (965)
T 2gag_A          294 DSAYELVRELAATGGVVAVIDARSSISAA---------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEAREL  364 (965)
T ss_dssp             TTHHHHHHHHGGGTCCSEEEESCSSCCHH---------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCE
T ss_pred             HHHHHHHHHHHHcCCcEEEEECCCccchh---------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCC
Confidence            48999999999999999999994 65432         4567889999999999999986312322 566654  10  0


Q ss_pred             cccCCCccccccEEEEecCcc-hHHHHHHHHHCCCcEEEEeccCC-----CCCCcccccCCcccc
Q psy11185         94 VRQDNTHKYDYDLLVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIP-----SPQGTTWGLGGTCVN  152 (312)
Q Consensus        94 ~~~~~~~~~~~d~vivg~G~~-gl~~a~~~~~~~~~~~~ve~~~~-----~~~~~v~a~Gd~~~~  152 (312)
                      +.   ..++++|.||+++|.. ...++.   ..+.. +.+|..++     ++.|+||++||++..
T Consensus       365 G~---~~~i~~D~Vv~a~G~~P~~~l~~---~~~g~-i~vd~~~~~~v~~ts~p~IyAaGD~a~~  422 (965)
T 2gag_A          365 GG---TQRFEADVLAVAGGFNPVVHLHS---QRQGK-LDWDTTIHAFVPADAVANQHLAGAMTGR  422 (965)
T ss_dssp             EE---EEEEECSEEEEECCEEECCHHHH---HTTCC-EEEETTTTEEEECSCCTTEEECGGGGTC
T ss_pred             Cc---eEEEEcCEEEECCCcCcChHHHH---hCCCc-EEEcCcccccccCCCCCCEEEEEecCCc
Confidence            10   1468999999999952 223222   22333 44555544     899999999996543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.70  E-value=4.6e-10  Score=102.89  Aligned_cols=114  Identities=23%  Similarity=0.371  Sum_probs=73.6

Q ss_pred             cEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      .+||||+|++|+.+|..|.+.+  .+++++|+....    .|        .+    .+..            ...+....
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~----~~--------~p----~l~~------------v~~g~~~~   55 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF----GF--------TP----AFPH------------LAMGWRKF   55 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE----EC--------GG----GHHH------------HHHTCSCG
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC----cc--------Cc----cHHH------------HhcCCCCH
Confidence            5899999999999999998754  578999864210    00        00    0000            00111000


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                      .  ....+                  +...+.+.+|+++.+.+..++...-++++++|  +++.||+||+|||+.+. ++
T Consensus        56 ~--~i~~~------------------~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g--~~i~YD~LViAtG~~~~-~~  112 (430)
T 3hyw_A           56 E--DISVP------------------LAPLLPKFNIEFINEKAESIDPDANTVTTQSG--KKIEYDYLVIATGPKLV-FG  112 (430)
T ss_dssp             G--GSEEE------------------STTTGGGGTEEEECSCEEEEETTTTEEEETTC--CEEECSEEEECCCCEEE-CC
T ss_pred             H--Hhhhc------------------HHHHHHHCCcEEEEeEEEEEECCCCEEEECCC--CEEECCEEEEeCCCCcc-CC
Confidence            0  11111                  11224567999999998888877777888888  78999999999998764 45


Q ss_pred             CCCCCcc
Q psy11185        263 IPGAKEH  269 (312)
Q Consensus       263 ~~g~~~~  269 (312)
                      +||..++
T Consensus       113 i~G~~e~  119 (430)
T 3hyw_A          113 AEGQEEN  119 (430)
T ss_dssp             SBTHHHH
T ss_pred             ccCcccC
Confidence            8887543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.69  E-value=1.7e-08  Score=91.37  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc
Q psy11185        214 RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH  269 (312)
Q Consensus       214 ~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~  269 (312)
                      ...+|+++.+.+..++.....+.+.+|  .++.||+||+|||+.+..|+++|....
T Consensus        66 ~~~gv~~i~~~v~~id~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G~~e~  119 (401)
T 3vrd_B           66 RAHGIQVVHDSALGIDPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEGYSEA  119 (401)
T ss_dssp             HHTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBTCCSG
T ss_pred             HHCCCEEEEeEEEEEEccCcEEEeccc--ceeecceeeeccCCccccCCccCchhh
Confidence            456899999988888877777788888  789999999999999999999998653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.63  E-value=5e-08  Score=89.99  Aligned_cols=89  Identities=9%  Similarity=-0.014  Sum_probs=53.4

Q ss_pred             cceEEEeeceeeEEEEcCCC-ee-EEEEeecc-------ccc--cCCCccccccEEEEecCcchHHHHHHHHHCC-CcEE
Q psy11185         63 GGVHFLHKCLPLSVTKLADG-KL-KVQYKNVA-------EVR--QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHG-RKVI  130 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~~~~-~~-~v~~~~~~-------~~~--~~~~~~~~~d~vivg~G~~gl~~a~~~~~~~-~~~~  130 (312)
                      +||++++++.+.++..++++ .+ .+.+....       ...  .....++++|.||++.|..+..++ .+...+ ...+
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l~-gl~~~d~~g~i  348 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPID-PSVPFDPKLGV  348 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCCC-TTSCCBTTTTB
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCCC-CCcccccCCCe
Confidence            89999999999999764323 22 34443100       000  000146899999999995332221 110112 1346


Q ss_pred             EEeccCCCC-CCcccccCCcccc
Q psy11185        131 VLDYVIPSP-QGTTWGLGGTCVN  152 (312)
Q Consensus       131 ~ve~~~~~~-~~~v~a~Gd~~~~  152 (312)
                      ++|...+++ .|+||++||+...
T Consensus       349 ~vn~~~rt~~~p~vya~Gd~~~g  371 (460)
T 1cjc_A          349 VPNMEGRVVDVPGLYCSGWVKRG  371 (460)
T ss_dssp             CCEETTEETTCTTEEECTHHHHC
T ss_pred             eECCCCcCcCCCCEEEEEeCCcC
Confidence            667777888 6999999996643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.63  E-value=1.2e-07  Score=89.88  Aligned_cols=46  Identities=30%  Similarity=0.479  Sum_probs=37.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      ++|+||||+|++|+.+|..+.+.|.+|+++|+.........++.|.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg  171 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGG  171 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCce
Confidence            6899999999999999999999999999999876544333344443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.63  E-value=3.1e-07  Score=86.91  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccch-hhHHHHHHHHH---HHHHHHHHc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP-KKLMHQAALLG---EAIKDAVAY  177 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~-~~~~~~a~~~~---~~~~~~~~~  177 (312)
                      .++|+||||+|++|+.+|..+.+.|.+++++|..... .    +...|....+... ..........+   ..+.+....
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~-i----G~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADT-I----GQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGI  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG-T----TCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccc-c----CCcCccccccccchHHHHHHHHHhhhHHHHHhhhccc
Confidence            3689999999999999999999999999999975311 0    0011100000000 01110000000   011111101


Q ss_pred             CCccCC--ccc------cccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEe--eCCe-EEEEecCCCeEEE
Q psy11185        178 GWEIPN--VKS------VQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFI--DQHS-VEATMKNGEKKTL  245 (312)
Q Consensus       178 ~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~--~~~~-~~v~~~~G~~~~i  245 (312)
                      .+....  ..+      ...|...+.           ..+...+.. .+++++...+..+  +... +.+.+.+|  ..+
T Consensus       101 ~f~~l~~~kGpav~~~r~~~Dr~~~~-----------~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG--~~i  167 (637)
T 2zxi_A          101 QFKMLNTRKGKAVQSPRAQADKKRYR-----------EYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLG--VEY  167 (637)
T ss_dssp             EEEEESTTSCGGGCEEEEEECHHHHH-----------HHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTS--CEE
T ss_pred             ceeecccccCccccchhhhCCHHHHH-----------HHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCC--cEE
Confidence            110000  000      012222222           223344555 5899877665543  2343 34777788  689


Q ss_pred             EcCeEEEccCCCCCCCCCCCCCc
Q psy11185        246 TAENILIATGGRPNYPDIPGAKE  268 (312)
Q Consensus       246 ~ad~vVlAtG~~p~~p~~~g~~~  268 (312)
                      .||.||+|||+++..+.++|...
T Consensus       168 ~AdaVVLATG~~s~~~~~~G~~~  190 (637)
T 2zxi_A          168 KTKAVVVTTGTFLNGVIYIGDKM  190 (637)
T ss_dssp             ECSEEEECCTTCBTCEEEETTEE
T ss_pred             EeCEEEEccCCCccCceecccee
Confidence            99999999999998888888754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.62  E-value=7.8e-07  Score=85.95  Aligned_cols=106  Identities=14%  Similarity=0.020  Sum_probs=70.8

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC---------cc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL---------RG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY   88 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l---------~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~   88 (312)
                      .|+++|..|++.|++|+|+|+. .+-         +.  ...++.+++.+.+++.||++++++.+....-..  ...+.+
T Consensus       384 AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~--~d~lvi  461 (671)
T 1ps9_A          384 AGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQA--FDETIL  461 (671)
T ss_dssp             HHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSSSSCC--SSEEEE
T ss_pred             HHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecHHHhhc--CCEEEE
Confidence            5799999999999999999984 431         11  123455677788888999999998775421101  125555


Q ss_pred             eeccccccCCC------------------ccccccEEEEecCcchHHHHHHHHHCCCc
Q psy11185         89 KNVAEVRQDNT------------------HKYDYDLLVLGGGSGGLAAAKEAAAHGRK  128 (312)
Q Consensus        89 ~~~~~~~~~~~------------------~~~~~d~vivg~G~~gl~~a~~~~~~~~~  128 (312)
                      ..|..+..+..                  ......++|||+|..|+.+|..+.+.+.+
T Consensus       462 AtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~  519 (671)
T 1ps9_A          462 ASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES  519 (671)
T ss_dssp             CCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             ccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCC
Confidence            55543322110                  01134689999999999999998877654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.59  E-value=6.4e-08  Score=89.22  Aligned_cols=127  Identities=11%  Similarity=0.058  Sum_probs=79.2

Q ss_pred             hhhhhhhHhhhcc--------------------C-CeEEEEEcc-CCCccch-HH-------------------------
Q psy11185         20 DSGLECAGFLNGL--------------------G-FNATVMIRS-VPLRGFD-QQ-------------------------   51 (312)
Q Consensus        20 ~ig~E~A~~l~~~--------------------g-~~vtl~~~~-~~l~~~~-~~-------------------------   51 (312)
                      ++|+|+|..|++.                    | .+|||++|+ .++..|. ++                         
T Consensus       157 ~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~  236 (456)
T 1lqt_A          157 NVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDE  236 (456)
T ss_dssp             HHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHH
T ss_pred             HHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhh
Confidence            4789999999985                    5 499999984 5543332 11                         


Q ss_pred             -----------HHHHHHHHHhc------cceEEEeeceeeEEEEcCCCeeEEEEeec-------------cccccCCCcc
Q psy11185         52 -----------MAKLICEEMAE------GGVHFLHKCLPLSVTKLADGKLKVQYKNV-------------AEVRQDNTHK  101 (312)
Q Consensus        52 -----------~~~~~~~~l~~------~gi~~~~~~~v~~~~~~~~~~~~v~~~~~-------------~~~~~~~~~~  101 (312)
                                 +.+.+.+.+++      +||++++++.+.++..+ +....+.+...             .++.   ..+
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~g~---~~~  312 (456)
T 1lqt_A          237 DAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK-RKVERIVLGRNELVSDGSGRVAAKDTGE---REE  312 (456)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS-SSCCEEEEEEEEEEECSSSSEEEEEEEE---EEE
T ss_pred             hhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC-CcEeEEEEEEEEecCCCcccccccCCCc---eEE
Confidence                       13445555556      79999999999999753 22113444320             0110   146


Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCC-CCCCcccccCCcccc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIP-SPQGTTWGLGGTCVN  152 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~-~~~~~v~a~Gd~~~~  152 (312)
                      +++|.||++.|..+..+. . ...+ ...++++...+ ++.|++|++||++..
T Consensus       313 i~~d~vi~a~G~~p~~l~-g-l~~d~~g~i~vn~~~rvt~~pgvya~GD~~~g  363 (456)
T 1lqt_A          313 LPAQLVVRSVGYRGVPTP-G-LPFDDQSGTIPNVGGRINGSPNEYVVGWIKRG  363 (456)
T ss_dssp             EECSEEEECSCEECCCCT-T-SCCBTTTTBCCEETTEETTCSSEEECTHHHHC
T ss_pred             EEcCEEEEccccccCCCC-C-CcccCCCCeeECCCCcCCCCCCEEEEeccCCC
Confidence            899999999995332221 1 1111 12355565555 789999999997654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.59  E-value=6.5e-08  Score=89.60  Aligned_cols=44  Identities=25%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      |+||||+|++|+.+|..+.+.+.+++++|+. .......|+.|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi   44 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGV   44 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCe
Confidence            7999999999999999999999999999987 4444445666654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.57  E-value=2.7e-07  Score=83.97  Aligned_cols=146  Identities=18%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc--cch--------hhHH--HHHHHHH
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG--CIP--------KKLM--HQAALLG  168 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~--~~~--------~~~~--~~a~~~~  168 (312)
                      ..++|++|||+|++|+.+|..+.+.|.+++++|+.......-..+.|+.|...+  +.+        ....  .......
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            446899999999999999999999999999999865422111111222232111  000        0000  0000011


Q ss_pred             HHHHHHHHcCCccCC--ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEecCCCeE
Q psy11185        169 EAIKDAVAYGWEIPN--VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKK  243 (312)
Q Consensus       169 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~  243 (312)
                      ..+......+..+..  .....+..         ....+...+...+.+.++++..++ +..+  +...+.+++.+|   
T Consensus       105 ~~~~~~~~~Gi~~~~~~~g~~~~~~---------~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g---  172 (417)
T 3v76_A          105 DFVALVERHGIGWHEKTLGQLFCDH---------SAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG---  172 (417)
T ss_dssp             HHHHHHHHTTCCEEECSTTEEEESS---------CHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE---
T ss_pred             HHHHHHHHcCCCcEEeeCCEEeeCC---------CHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc---
Confidence            111222223322111  00011100         011222234445566688887654 3332  345677887776   


Q ss_pred             EEEcCeEEEccCCCC
Q psy11185        244 TLTAENILIATGGRP  258 (312)
Q Consensus       244 ~i~ad~vVlAtG~~p  258 (312)
                      ++.||.||+|||+.+
T Consensus       173 ~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          173 TVDAASLVVASGGKS  187 (417)
T ss_dssp             EEEESEEEECCCCSS
T ss_pred             EEEeeEEEECCCCcc
Confidence            799999999999776

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.54  E-value=1.8e-07  Score=88.70  Aligned_cols=47  Identities=32%  Similarity=0.425  Sum_probs=37.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .++|+||||+|++|+.+|..+.+.|.+|+++|+.........++.|.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg  166 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGG  166 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCce
Confidence            56899999999999999999999999999999876543333333343

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.53  E-value=7.1e-08  Score=85.35  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc--CCCccc--hHHHHHHHHHHHh----------------------------ccceEE
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS--VPLRGF--DQQMAKLICEEMA----------------------------EGGVHF   67 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~--~~l~~~--~~~~~~~~~~~l~----------------------------~~gi~~   67 (312)
                      .+|+|+|..|++.| +||++.++  .+++..  .+.+.+++.+.+.                            +.|+ +
T Consensus       173 ~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i  250 (357)
T 4a9w_A          173 NSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-L  250 (357)
T ss_dssp             HHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHHHTTC-C
T ss_pred             cCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-e
Confidence            47999999999998 69999983  455442  3444444444333                            3444 5


Q ss_pred             EeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH-HHHHH-HHHCCCcEEEEecc--CCCCCCcc
Q psy11185         68 LHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL-AAAKE-AAAHGRKVIVLDYV--IPSPQGTT  143 (312)
Q Consensus        68 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl-~~a~~-~~~~~~~~~~ve~~--~~~~~~~v  143 (312)
                      ..+..+.+++..     .+.+.++        .++++|.||++.|...- ..... ........+.+|..  ++++.|+|
T Consensus       251 ~~~~~v~~~~~~-----~v~~~~g--------~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~v  317 (357)
T 4a9w_A          251 AAVPPPARFSPT-----GMQWADG--------TERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSV  317 (357)
T ss_dssp             CEECCCSEEETT-----EEECTTS--------CEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTE
T ss_pred             EEecCcceEeCC-----eeEECCC--------CEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCe
Confidence            566667766532     4666555        57899999999995221 21111 11122234777877  89999999


Q ss_pred             cccCCc
Q psy11185        144 WGLGGT  149 (312)
Q Consensus       144 ~a~Gd~  149 (312)
                      |++|||
T Consensus       318 ya~Gd~  323 (357)
T 4a9w_A          318 WLLGYG  323 (357)
T ss_dssp             EECSSC
T ss_pred             EEeccc
Confidence            999963

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.53  E-value=3.1e-07  Score=84.40  Aligned_cols=37  Identities=43%  Similarity=0.680  Sum_probs=32.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|+...
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~   60 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   60 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4568999999999999999999999999999997653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.51  E-value=7.5e-07  Score=84.97  Aligned_cols=49  Identities=27%  Similarity=0.438  Sum_probs=39.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++|+........+++.|+.
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi   64 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI   64 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCE
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCc
Confidence            3568999999999999999999999999999998765444445665654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.49  E-value=3.9e-05  Score=72.05  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             hhhhhhHhhh-ccCCeEEEEEcc-CCC--------cc-----------------------------chHHHHHHHHHHHh
Q psy11185         21 SGLECAGFLN-GLGFNATVMIRS-VPL--------RG-----------------------------FDQQMAKLICEEMA   61 (312)
Q Consensus        21 ig~E~A~~l~-~~g~~vtl~~~~-~~l--------~~-----------------------------~~~~~~~~~~~~l~   61 (312)
                      .|+.+|..|+ +.|.+|+|+|+. .+-        ++                             ..+++.+++.+..+
T Consensus        19 aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~   98 (540)
T 3gwf_A           19 GGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVD   98 (540)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHHHHHHHHHHHH
Confidence            5899999999 999999999983 321        11                             13578888888888


Q ss_pred             ccce--EEEeeceeeEEEEcCC-CeeE-------------EEEeecc--ccccCCC--------------------cccc
Q psy11185         62 EGGV--HFLHKCLPLSVTKLAD-GKLK-------------VQYKNVA--EVRQDNT--------------------HKYD  103 (312)
Q Consensus        62 ~~gi--~~~~~~~v~~~~~~~~-~~~~-------------v~~~~~~--~~~~~~~--------------------~~~~  103 (312)
                      +.|+  .++++++|++++.+.+ +...             +.+..|.  .+..+..                    ....
T Consensus        99 ~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~  178 (540)
T 3gwf_A           99 RFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAG  178 (540)
T ss_dssp             HTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTT
T ss_pred             HcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEeecCCCcccccc
Confidence            8888  8899999998875433 1122             2333331  1111110                    0112


Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|||+|.+|+.++..+.+.+.++.+++...
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  211 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP  211 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            359999999999999999998888898887643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.42  E-value=1.5e-06  Score=82.79  Aligned_cols=49  Identities=33%  Similarity=0.503  Sum_probs=38.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ..++|+||||+|++|+.+|..+.+.|  .+++++|+.........++.|+.
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi   53 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGS   53 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCE
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCcc
Confidence            45689999999999999999999988  89999998654433344555553

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.41  E-value=1.8e-05  Score=72.96  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             hhhhhhhHhhhc---cCCe---EEEEEcc-CCC-------------------------------------ccc-------
Q psy11185         20 DSGLECAGFLNG---LGFN---ATVMIRS-VPL-------------------------------------RGF-------   48 (312)
Q Consensus        20 ~ig~E~A~~l~~---~g~~---vtl~~~~-~~l-------------------------------------~~~-------   48 (312)
                      ..|+.+|..|++   .|.+   |+|||++ .+-                                     +.+       
T Consensus        12 ~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~   91 (464)
T 2xve_A           12 PSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFG   91 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBTTBCHHHHHS
T ss_pred             HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccCCCCCCcccC
Confidence            468999999999   9999   9999984 421                                     000       


Q ss_pred             --------hHHHHHHHHHHHhccceE--EEeeceeeEEEEcCC-CeeEEEEeeccccccCCCccccccEEEEecC
Q psy11185         49 --------DQQMAKLICEEMAEGGVH--FLHKCLPLSVTKLAD-GKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        49 --------~~~~~~~~~~~l~~~gi~--~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                              ..++.+++.+.+++.|++  +++++.|++++...+ +...|.+.++..+..   .++.+|.||++.|
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~---~~~~~d~VVvAtG  163 (464)
T 2xve_A           92 KPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTI---YSEEFDYVVCCTG  163 (464)
T ss_dssp             SCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEE---EEEEESEEEECCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCce---EEEEcCEEEECCC
Confidence                    156778888888888988  889999999876443 133455544211100   2456666676666

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.40  E-value=2e-06  Score=80.88  Aligned_cols=49  Identities=31%  Similarity=0.451  Sum_probs=33.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      ..++|+||||+|.+|+.+|..+.+ +.+|+++|+.........|+.|+.+
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~   54 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIA   54 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-----------
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEE
Confidence            457899999999999999999998 9899999987654434455555543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.40  E-value=6.9e-07  Score=71.33  Aligned_cols=115  Identities=26%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      +|++|||+|++|+.+|..+.+.+.+++++|...... +.    .   ....                         .++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~----~---~~~~-------------------------~~~~   48 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KG----V---SRVP-------------------------NYPG   48 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TT----C---SCCC-------------------------CSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cC----c---hhhh-------------------------ccCC
Confidence            589999999999999999999999999999753110 00    0   0000                         0000


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      . +..+....+           ...+...+.+.++++..+....++  ...+.+++.+|   ++.+|.||+|+|..|.++
T Consensus        49 ~-~~~~~~~~~-----------~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g---~i~ad~vI~A~G~~~~~~  113 (180)
T 2ywl_A           49 L-LDEPSGEEL-----------LRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG---VEKAERLLLCTHKDPTLP  113 (180)
T ss_dssp             C-TTCCCHHHH-----------HHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC---EEEEEEEEECCTTCCHHH
T ss_pred             C-cCCCCHHHH-----------HHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC---EEEECEEEECCCCCCCcc
Confidence            0 001111222           222334566778888766533332  34577777777   789999999999988554


Q ss_pred             CCCCC
Q psy11185        262 DIPGA  266 (312)
Q Consensus       262 ~~~g~  266 (312)
                      ...|.
T Consensus       114 ~~~g~  118 (180)
T 2ywl_A          114 SLLGL  118 (180)
T ss_dssp             HHHTC
T ss_pred             ccCCC
Confidence            33343

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.39  E-value=8.7e-06  Score=72.14  Aligned_cols=34  Identities=41%  Similarity=0.587  Sum_probs=31.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5799999999999999999999999999999864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.39  E-value=4.6e-06  Score=77.90  Aligned_cols=38  Identities=39%  Similarity=0.533  Sum_probs=34.3

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS  138 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~  138 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++|+....
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            46799999999999999999999999999999987654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.37  E-value=3.6e-06  Score=79.96  Aligned_cols=148  Identities=19%  Similarity=0.267  Sum_probs=77.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC--CCCcccccCCcccccccchhhHHHHHHHHH---HHHHHHH
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS--PQGTTWGLGGTCVNVGCIPKKLMHQAALLG---EAIKDAV  175 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~--~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~---~~~~~~~  175 (312)
                      ...+|++|||+|++|+.+|..+.+.|.+++++|.....  ..+-..+.|...      ............   ..+.+..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia------~~~lv~el~al~g~~~~~~d~~   92 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVA------KGQITREIDALGGEMGKAIDAT   92 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHH------HHHHHHHHHHHTCSHHHHHHHH
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhh------HHHHHHHHHhcccHHHHHHHhc
Confidence            34689999999999999999999999999999975311  000001111100      000000000000   0011111


Q ss_pred             HcCCccCC--ccc------cccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEe--eCCeEE-EEecCCCeE
Q psy11185        176 AYGWEIPN--VKS------VQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFI--DQHSVE-ATMKNGEKK  243 (312)
Q Consensus       176 ~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~--~~~~~~-v~~~~G~~~  243 (312)
                      ...+....  ..+      ...|...+..           .+...+.. .+++++.+.+...  +...+. +.+.+|  .
T Consensus        93 gi~f~~l~~~kgpav~~~r~~~Dr~~l~~-----------~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G--~  159 (641)
T 3cp8_A           93 GIQFRMLNRSKGPAMHSPRAQADKTQYSL-----------YMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSG--R  159 (641)
T ss_dssp             EEEEEEECSSSCTTTCEEEEEECHHHHHH-----------HHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--C
T ss_pred             CCchhhcccccCccccchhhhcCHHHHHH-----------HHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCC--c
Confidence            11110000  000      1123333322           23334555 4888877665543  345554 777788  6


Q ss_pred             EEEcCeEEEccCCCCCCCCCCCCC
Q psy11185        244 TLTAENILIATGGRPNYPDIPGAK  267 (312)
Q Consensus       244 ~i~ad~vVlAtG~~p~~p~~~g~~  267 (312)
                      .+.||.||+|||+++..+.++|..
T Consensus       160 ~i~Ad~VVLATG~~s~~~i~~G~~  183 (641)
T 3cp8_A          160 AIQAKAAILACGTFLNGLIHIGMD  183 (641)
T ss_dssp             EEEEEEEEECCTTCBTCEEEETTE
T ss_pred             EEEeCEEEECcCCCCCccceeeee
Confidence            899999999999988765555543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.37  E-value=1e-06  Score=83.47  Aligned_cols=47  Identities=36%  Similarity=0.495  Sum_probs=37.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      ..+|++|||+|++|+.+|..+.+.+.+++++|+.........++.|.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg  171 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGG  171 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCe
Confidence            36799999999999999999999999999999876543333344443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.37  E-value=1.6e-06  Score=72.30  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc-cccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN-VGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|+....       .|-.|.. .+.++...         .+..   +. . 
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~-------~G~~~~~~~~~~~~~~---------~~~~---~~-d-   61 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA-------VMMPFLPPKPPFPPGS---------LLER---AY-D-   61 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG-------TTCCSSCCCSCCCTTC---------HHHH---HC-C-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCc-------CCcccCccccccchhh---------HHhh---hc-c-
Confidence            579999999999999999999999999999975311       1100100 00000000         0000   00 0 


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEe--eCCe-EEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFI--DQHS-VEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~--~~~~-~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                       .   ..++.           ..+...+...+.+. ++++....+..+  +... +.+.+.+|  .++.||.||+|||.+
T Consensus        62 -~---~g~~~-----------~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~  124 (232)
T 2cul_A           62 -P---KDERV-----------WAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSF  124 (232)
T ss_dssp             -T---TCCCH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTC
T ss_pred             -C---CCCCH-----------HHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCC
Confidence             0   00011           12233344556665 888876554433  2333 35667777  589999999999987


Q ss_pred             CCCCCCCCC
Q psy11185        258 PNYPDIPGA  266 (312)
Q Consensus       258 p~~p~~~g~  266 (312)
                      +.....+|.
T Consensus       125 s~~~~~~G~  133 (232)
T 2cul_A          125 LGARLFLGG  133 (232)
T ss_dssp             SSCEEEETT
T ss_pred             hhhceecCC
Confidence            765444454

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.34  E-value=3e-06  Score=81.41  Aligned_cols=49  Identities=33%  Similarity=0.418  Sum_probs=39.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++|+.........++.|+.
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s~~a~GGi   51 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGM   51 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCE
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcccccCCCe
Confidence            4578999999999999999999999999999998765444444555543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.31  E-value=4.1e-06  Score=79.59  Aligned_cols=48  Identities=29%  Similarity=0.541  Sum_probs=38.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      ..++|+||||+|.+|+.+|..+.+.|.+|+++|+.........++.|+
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GG   52 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGG   52 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCc
Confidence            457899999999999999999999999999999875543334455554

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.29  E-value=2.2e-06  Score=77.76  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35899999999999999999999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.25  E-value=3.2e-05  Score=70.85  Aligned_cols=60  Identities=15%  Similarity=0.049  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ++.+++.+..++.++.++++++|++++... +...|.+.+...+..  ..++.+|.||++.|.
T Consensus       116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~~~V~~~~~~~G~~--~~~~~~d~VVvAtG~  175 (447)
T 2gv8_A          116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GSWVVTYKGTKAGSP--ISKDIFDAVSICNGH  175 (447)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET-TEEEEEEEESSTTCC--EEEEEESEEEECCCS
T ss_pred             HHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-CeEEEEEeecCCCCe--eEEEEeCEEEECCCC
Confidence            667788887777778888999999997643 335666655111100  025789999999995

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.24  E-value=4.9e-06  Score=77.48  Aligned_cols=138  Identities=16%  Similarity=0.093  Sum_probs=74.6

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ...+|++|||+|++|+.+|..+.+.|.+++++|+....        |+ +......+.......  .....   ...+ .
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~--------g~-~~~~~~~~~~~~~l~--~~g~~---~~~~-~  154 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKF--------SR-HNVLHLWPFTIHDLR--ALGAK---KFYG-R  154 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSC--------CC-CCEEECCHHHHHHHH--TTTHH---HHCT-T
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecccc--------CC-CCcccCChhHHHHHH--HcCCc---cccc-c
Confidence            34689999999999999999999999999999986532        22 111112221110000  00000   0000 0


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeC-----CeEEEEe--c-CCCeEEEEcCeEE
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQ-----HSVEATM--K-NGEKKTLTAENIL  251 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~-----~~~~v~~--~-~G~~~~i~ad~vV  251 (312)
                      +.......++..           .+...+...+...++++..++ +..+..     ..+.++.  . +|+..++.+|.||
T Consensus       155 ~~~~~~~~~~~~-----------~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV  223 (497)
T 2bry_A          155 FCTGTLDHISIR-----------QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLI  223 (497)
T ss_dssp             TTCTTCCEEEHH-----------HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEE
T ss_pred             ccccccccCCHH-----------HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEE
Confidence            100000112211           222234445556789887664 433321     2344544  3 5533578999999


Q ss_pred             EccCCCCCCCCCC
Q psy11185        252 IATGGRPNYPDIP  264 (312)
Q Consensus       252 lAtG~~p~~p~~~  264 (312)
                      +|+|+.+....+.
T Consensus       224 ~A~G~~S~~r~~~  236 (497)
T 2bry_A          224 SAAGGKFVPEGFT  236 (497)
T ss_dssp             ECCCTTCCCTTCE
T ss_pred             ECCCCCccccccc
Confidence            9999877664433

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.20  E-value=2e-06  Score=80.74  Aligned_cols=36  Identities=25%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+.|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            345899999999999999999999999999999753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.19  E-value=3.2e-05  Score=66.48  Aligned_cols=36  Identities=31%  Similarity=0.552  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..+.+. +.+++++|+...
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            357999999999999999999986 889999998653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.14  E-value=7.4e-05  Score=66.69  Aligned_cols=35  Identities=31%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|.+|+.+|..|.+.+.+++++|+..
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36899999999999999999999999999999863

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.13  E-value=4.9e-05  Score=73.41  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|+||||+|.+|+.+|..|.+.|.+|+++|+..
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4899999999999999999999999999999854

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.13  E-value=2.1e-05  Score=75.58  Aligned_cols=46  Identities=30%  Similarity=0.414  Sum_probs=37.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC------CCcEEEEeccCCCCCCcccccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIPSPQGTTWGLG  147 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~~~~~~v~a~G  147 (312)
                      .+++|+||||+|.+|+.+|..+.+.      +.+|+++++...... +.++.|
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s-~s~AqG   71 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS-GAVAQG   71 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC-STTTTC
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC-cccccC
Confidence            5679999999999999999999886      889999998654433 335666

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.12  E-value=0.00036  Score=65.59  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=78.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC--------c-----------------------------cchHHHHHHHHHHHhc
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL--------R-----------------------------GFDQQMAKLICEEMAE   62 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l--------~-----------------------------~~~~~~~~~~~~~l~~   62 (312)
                      .|+.+|..|++.|.+|+|+|+. .+-        +                             ...+++.+++.+..++
T Consensus        20 aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~   99 (545)
T 3uox_A           20 TGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADA   99 (545)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999984 320        0                             0136788888888888


Q ss_pred             cce--EEEeeceeeEEEEcCC-Cee-------------EEEEeec--cccccCCC-----------------cc------
Q psy11185         63 GGV--HFLHKCLPLSVTKLAD-GKL-------------KVQYKNV--AEVRQDNT-----------------HK------  101 (312)
Q Consensus        63 ~gi--~~~~~~~v~~~~~~~~-~~~-------------~v~~~~~--~~~~~~~~-----------------~~------  101 (312)
                      .++  .++++++|++++.+.+ +..             .+.+..|  ..+..+..                 ..      
T Consensus       100 ~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~  179 (545)
T 3uox_A          100 MDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPK  179 (545)
T ss_dssp             HTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBS
T ss_pred             cCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEccccccccccccc
Confidence            887  7888988888764322 111             2333334  21111100                 01      


Q ss_pred             ----ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 ----YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ----~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                          ....++|||+|.+|+.++..+.+.+.++.+++...
T Consensus       180 ~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          180 GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence                12358999999999999999988888888887643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.11  E-value=0.00054  Score=64.42  Aligned_cols=116  Identities=11%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC--------cc-----------------------------chHHHHHHHHHHHhc
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL--------RG-----------------------------FDQQMAKLICEEMAE   62 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l--------~~-----------------------------~~~~~~~~~~~~l~~   62 (312)
                      .|+.+|..|++.|.+|+|+|+. .+-        ++                             ..+++.+++.+..++
T Consensus        32 aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~  111 (549)
T 4ap3_A           32 AGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADR  111 (549)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHHHHHHHHHHHH
Confidence            4889999999999999999983 321        00                             125788899998888


Q ss_pred             cce--EEEeeceeeEEEEcCCC-ee-------------EEEEeec--cccccCCC---------------------cccc
Q psy11185         63 GGV--HFLHKCLPLSVTKLADG-KL-------------KVQYKNV--AEVRQDNT---------------------HKYD  103 (312)
Q Consensus        63 ~gi--~~~~~~~v~~~~~~~~~-~~-------------~v~~~~~--~~~~~~~~---------------------~~~~  103 (312)
                      .++  +++++++|++++.+.+. ..             .+.+..|  ..+..+..                     ....
T Consensus       112 ~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~  191 (549)
T 4ap3_A          112 FDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTG  191 (549)
T ss_dssp             TTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBT
T ss_pred             cCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCC
Confidence            888  88899999988754331 11             2333333  11111100                     0112


Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|||+|.+|+.++..+.+.+.++.+++...
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            358999999999999999998888888887643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.10  E-value=2.9e-05  Score=69.43  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            57999999999999999999999999999997543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.06  E-value=7.9e-06  Score=70.28  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=62.8

Q ss_pred             hhhhhhhHhhhcc-CCeEEEEEcc-CCCcc--------------------------------------chHHHHHHHHHH
Q psy11185         20 DSGLECAGFLNGL-GFNATVMIRS-VPLRG--------------------------------------FDQQMAKLICEE   59 (312)
Q Consensus        20 ~ig~E~A~~l~~~-g~~vtl~~~~-~~l~~--------------------------------------~~~~~~~~~~~~   59 (312)
                      .+|+++|..|++. |.+|+|+|+. .+...                                      ...++...+.+.
T Consensus        49 ~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~  128 (284)
T 1rp0_A           49 SAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK  128 (284)
T ss_dssp             HHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHHHHHHHHHHH
Confidence            3789999999997 9999999984 43110                                      235566667777


Q ss_pred             Hhc-cceEEEeeceeeEEEEcCCCeeEEEEeec------cccccCCCccccccEEEEecCc
Q psy11185         60 MAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNV------AEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        60 l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +.+ .||++++++.++++..+.+....+.+...      ..+.......+++|.||++.|.
T Consensus       129 ~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~  189 (284)
T 1rp0_A          129 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  189 (284)
T ss_dssp             HHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             HHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCC
Confidence            765 69999999999999864332224444310      0000001146889999999994

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.06  E-value=3.6e-05  Score=71.83  Aligned_cols=36  Identities=36%  Similarity=0.634  Sum_probs=32.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            346899999999999999999999999999999864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.03  E-value=3.6e-05  Score=70.70  Aligned_cols=35  Identities=34%  Similarity=0.645  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            36899999999999999999999999999999864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.01  E-value=0.00013  Score=70.52  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=32.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|.+|+.+|..|.+.|.+|+++|+..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45899999999999999999999999999999854

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.00  E-value=4.6e-05  Score=68.82  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .-++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            346899999999999999999999999999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.00  E-value=6.8e-05  Score=68.34  Aligned_cols=36  Identities=33%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~  137 (312)
                      ..+|+||||+|.+|+++|..|.+.|. +|+++|+...
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            36899999999999999999999999 9999998653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.99  E-value=3.1e-05  Score=72.69  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=33.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~   39 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG   39 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3578999999999999999999999999999998654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.99  E-value=7.5e-05  Score=67.12  Aligned_cols=36  Identities=44%  Similarity=0.638  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHH-CC-CcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAA-HG-RKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~-~~-~~~~~ve~~~  136 (312)
                      ..++|++|||+|.+|+.+|..|.+ .+ .+++++|+..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            347899999999999999999999 88 8999999865

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.96  E-value=0.00018  Score=63.90  Aligned_cols=35  Identities=40%  Similarity=0.648  Sum_probs=31.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+|.+|+++|..|.+.|.+++++|+...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            47999999999999999999999999999998643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.94  E-value=0.00012  Score=69.58  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            36899999999999999999999999999999763

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.91  E-value=0.00018  Score=64.63  Aligned_cols=35  Identities=43%  Similarity=0.705  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|++|+++|..|.+.|.+++++|+...
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47999999999999999999999999999998643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.91  E-value=0.00013  Score=65.01  Aligned_cols=35  Identities=43%  Similarity=0.693  Sum_probs=32.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .||++|||+||+|+.+|..|.+.|.+++++|+...
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            48999999999999999999999999999997653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.90  E-value=7.3e-06  Score=73.89  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            35799999999999999999999999999999764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.86  E-value=0.00019  Score=63.84  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ....|++|||+|.+|+++|..|. .|.+|+++|+..
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            34689999999999999999999 588999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.85  E-value=2.7e-05  Score=69.97  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=31.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4799999999999999999999999999999754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.84  E-value=8.2e-05  Score=66.34  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.3

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ....+|++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3457899999999999999999999999999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.83  E-value=0.00042  Score=61.80  Aligned_cols=34  Identities=35%  Similarity=0.605  Sum_probs=31.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+|.+|+++|..|.+.|.+++++|+..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5799999999999999999999999999999764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.82  E-value=5.1e-05  Score=66.69  Aligned_cols=36  Identities=22%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..+.+.  +.+++++|+...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            468999999999999999999886  889999997653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.82  E-value=4e-05  Score=69.28  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      ..+|++|||+|.+|+++|..|.+.  +.+++++|+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            358999999999999999999998  99999999754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.79  E-value=0.00024  Score=63.87  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            357999999999999999999999999999998643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.77  E-value=2.2e-05  Score=74.28  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=30.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            468999999999999999999999999999997653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.75  E-value=0.0005  Score=65.91  Aligned_cols=37  Identities=38%  Similarity=0.539  Sum_probs=32.7

Q ss_pred             cccccEEEEecCcchHHHHHHHH---H-CCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAA---A-HGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~---~-~~~~~~~ve~~~~  137 (312)
                      ..++|+||||+|.+|+.+|..+.   + .|.+|+++|+...
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            45789999999999999999998   5 7889999998764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.75  E-value=0.0001  Score=66.36  Aligned_cols=36  Identities=28%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            357999999999999999999999999999997643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.68  E-value=6.9e-05  Score=69.73  Aligned_cols=38  Identities=32%  Similarity=0.588  Sum_probs=33.8

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34578999999999999999999999999999998643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.66  E-value=0.00058  Score=64.20  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~   60 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG   60 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3468999999999999999999999999999998653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.63  E-value=0.00046  Score=64.70  Aligned_cols=34  Identities=18%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             cccEEEEecCcchHHHHHHHHH---CCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~~  136 (312)
                      .+|++|||+|++|+.+|..|.+   .|.+++++|+..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            5799999999999999999999   899999999843

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.63  E-value=0.0004  Score=64.51  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +.++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4578999999999999999999999999999998653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.63  E-value=0.00023  Score=66.81  Aligned_cols=69  Identities=13%  Similarity=0.019  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHHHHHCC
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHG  126 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~~~~~  126 (312)
                      ..+.+.+.+.+++.|++++++++|++++..++....|.+.++        ..+.+|.||++.|..+-.....+...+
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G--------~~i~Ad~VVlA~G~~s~~~~~~l~~~G  288 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG--------EEIKSRHVVLAVGHSARDTFEMLHERG  288 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS--------CEEECSCEEECCCTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC--------CEEECCEEEECCCCChhhHHHHHHHcC
Confidence            567777888888899999999999999865443334666554        468999999999986643323344444

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.62  E-value=0.0029  Score=58.71  Aligned_cols=34  Identities=38%  Similarity=0.601  Sum_probs=31.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|++|||+|.+|+++|..+.+.|.+++++|+..
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999854

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.61  E-value=0.0016  Score=59.34  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=30.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC-CcEEEEec
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDY  134 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~  134 (312)
                      .++|+||||+|.+|+++|..|.+.+ .+|+++|+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            4689999999999999999999988 89999998

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.59  E-value=0.00071  Score=58.99  Aligned_cols=36  Identities=31%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..+.+.  +.+++++|+...
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            467999999999999999999987  889999997653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.57  E-value=0.0011  Score=59.76  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=31.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCc-EEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~  136 (312)
                      ++|++|||+|++|+.+|..|.+.|.+ ++++|+..
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            47999999999999999999999999 99999854

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.54  E-value=0.0009  Score=63.41  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC------CCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~  137 (312)
                      ..++|+||||+|++|+.+|..|.+.      +.+++++|+...
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~   75 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   75 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCC
Confidence            4578999999999999999999988      889999998643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.53  E-value=0.0014  Score=61.16  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHH------------CCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA------------HGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~------------~~~~~~~ve~~  135 (312)
                      ..+|+||||+|++|+.+|..|.+            .|.+++++|+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~   51 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESP   51 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCC
Confidence            35799999999999999999998            88899999974

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.48  E-value=0.00034  Score=64.94  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCcc-----c----------------------------hHHHHHHHHHHHhccceE
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLRG-----F----------------------------DQQMAKLICEEMAEGGVH   66 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~-----~----------------------------~~~~~~~~~~~l~~~gi~   66 (312)
                      .|+.+|..|++.|.+|+|+|+. .+.+.     .                            ..++.+.+.+.+++.||+
T Consensus       103 aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~  182 (497)
T 2bry_A          103 CGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVE  182 (497)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCE
Confidence            7899999999999999999984 43100     0                            156777888888889999


Q ss_pred             EEeeceeeEEEEcC--CCeeEEEEeec-cccccCCCccccccEEEEecCc
Q psy11185         67 FLHKCLPLSVTKLA--DGKLKVQYKNV-AEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        67 ~~~~~~v~~~~~~~--~~~~~v~~~~~-~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +++++++++++.+.  ++.+.+.+.+. +. .   ..++.+|.||++.|.
T Consensus       183 v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g-~---~~~i~ad~VV~A~G~  228 (497)
T 2bry_A          183 IHWGVKFTGLQPPPRKGSGWRAQLQPNPPA-Q---LASYEFDVLISAAGG  228 (497)
T ss_dssp             EEESCEEEEEECCCSTTCCBEEEEESCCCH-H---HHTCCBSEEEECCCT
T ss_pred             EEeCCEEEEEEEecCCCCEEEEEEEECCCC-C---EEEEEcCEEEECCCC
Confidence            99999999998532  22356666321 11 0   036789999999995

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.44  E-value=0.0013  Score=61.03  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             ccEEEEecCcchHHHHHHHHH---CCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~~  136 (312)
                      +|+||||+|++|+.+|..|.+   .|.+++++|+..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            699999999999999999999   899999999753

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.37  E-value=0.003  Score=62.38  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      .+|++|||+|.+|+++|..|.+.|. +|+++|+..
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            5799999999999999999999998 899999865

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.33  E-value=0.0013  Score=63.04  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+ .|.+++++|+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            36899999999999999999999 899999999864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.29  E-value=0.0029  Score=59.41  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHH---CCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~  135 (312)
                      -.+|+||||+|++|+.+|..|.+   .+.+++++|+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            35799999999999999999999   88899999974

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.28  E-value=0.00011  Score=64.56  Aligned_cols=33  Identities=21%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             ccEEEEecCcchHHHHHHHHH---CCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAA---HGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~---~~~~~~~ve~~~  136 (312)
                      +|++|||+|++|+.+|..|.+   .|.+++++|+..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            489999999999999999998   888999999754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00066  Score=61.54  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCcc----------------------------------------------------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLRG----------------------------------------------------   47 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~----------------------------------------------------   47 (312)
                      .|+.+|..|++.|.+|+|+|+. .+.+.                                                    
T Consensus        38 AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~  117 (417)
T 3v76_A           38 AGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDFVALVERHGIGW  117 (417)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHHHHHHHHcCCCc
Confidence            5899999999999999999984 32100                                                    


Q ss_pred             ------------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         48 ------------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        48 ------------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                                  ...++.+.+.+.+++.||+++++++|++++.+++ .+.|...+         ..+.+|.||++.|.
T Consensus       118 ~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~~~V~~~~---------g~i~ad~VIlAtG~  185 (417)
T 3v76_A          118 HEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-GFRVTTSA---------GTVDAASLVVASGG  185 (417)
T ss_dssp             EECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-EEEEEETT---------EEEEESEEEECCCC
T ss_pred             EEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-EEEEEECC---------cEEEeeEEEECCCC
Confidence                        0136777888888889999999999999986543 34554433         25789999999995

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.27  E-value=0.00019  Score=59.92  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+|++|||+||+|+.+|..|.+.|.+++++|+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4799999999999999999999999999999754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.25  E-value=0.0017  Score=58.00  Aligned_cols=33  Identities=24%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .|++|||+|++|+.+|..+.+.|.++.++|...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            489999999999999999999999999999765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.21  E-value=0.00039  Score=64.51  Aligned_cols=101  Identities=17%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             HHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc-hHHHHHHH-HHC---CCcEEE-
Q psy11185         58 EEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAH---GRKVIV-  131 (312)
Q Consensus        58 ~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~---~~~~~~-  131 (312)
                      +.+++.||++++++.+.+++.++ ....+.+.++        .++++|.||+++|.. ...++..+ .+.   ....+. 
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~-~v~~v~~~~g--------~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~  335 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNE-KVERVIDMNN--------HEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPV  335 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSS-SCCEEEETTC--------CEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEEC
T ss_pred             HHHHhCCcEEEeCCeeEEEecCC-ceEEEEeCCC--------eEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeec
Confidence            66778899999999999997532 2234555443        578999999999953 22333222 111   122343 


Q ss_pred             EeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185        132 LDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       132 ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      +|..++ +.++||++||+... +     ....+..+++.+..+
T Consensus       336 vd~~~~-s~~~vya~GD~~~~-~-----~~~~A~~~g~~aa~~  371 (493)
T 1y56_A          336 LDEYHR-IKDGIYVAGSAVSI-K-----PHYANYLEGKLVGAY  371 (493)
T ss_dssp             CCTTSE-EETTEEECSTTTCC-C-----CHHHHHHHHHHHHHH
T ss_pred             cccccC-cCCCEEEEeccCCc-c-----CHHHHHHHHHHHHHH
Confidence            677777 88999999996532 2     233455555555443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.20  E-value=0.0025  Score=57.00  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            58999999999999999999999999999754

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.18  E-value=0.0019  Score=60.82  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .++|++|||+|.+|+.+|..+.+.|.+++++|+.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~   50 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMN   50 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4689999999999999999999999999999986

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.15  E-value=0.0012  Score=58.92  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCc--------------------------------------------cc-------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLR--------------------------------------------GF-------   48 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~--------------------------------------------~~-------   48 (312)
                      .|+.+|..|++.|.+|+|+|+. ....                                            .+       
T Consensus        22 aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  101 (379)
T 3alj_A           22 AGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLPW  101 (379)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEEEEEECGGGCCE
T ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCceeeeccCCCCce
Confidence            7899999999999999999984 3210                                            00       


Q ss_pred             ----hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         49 ----DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        49 ----~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                          -..+.+.+.+.+++.||++++++++++++.  ++  .+.+.++        .++.+|.||.+.|...
T Consensus       102 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~--~v~~~~g--------~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          102 RIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG--RLTLQTG--------EVLEADLIVGADGVGS  160 (379)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT--EEEETTS--------CEEECSEEEECCCTTC
T ss_pred             EEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC--EEEECCC--------CEEEcCEEEECCCccH
Confidence                045567778888888999999999999875  33  5666554        4688999999999744

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.03  E-value=0.0021  Score=57.97  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCc--------------------c-------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLR--------------------G-------------------------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~--------------------~-------------------------------   47 (312)
                      ..|+.+|..|++.|.+|+|+|+. .+.+                    .                               
T Consensus        14 ~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~   93 (401)
T 2gqf_A           14 AAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFISLVAEQGIT   93 (401)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHHHHHHhCCCc
Confidence            37899999999999999999984 3310                    0                               


Q ss_pred             -------------chHHHHHHHHHHHhccceEEEeeceeeEEEEcC---CCeeEEEEeeccccccCCCccccccEEEEec
Q psy11185         48 -------------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA---DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGG  111 (312)
Q Consensus        48 -------------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~  111 (312)
                                   ...++.+.+.+.+++.||++++++.++++..+.   ++.+.+...+         ..+.+|.||+++
T Consensus        94 ~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~---------g~i~ad~VVlAt  164 (401)
T 2gqf_A           94 YHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS---------TQWQCKNLIVAT  164 (401)
T ss_dssp             EEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT---------EEEEESEEEECC
T ss_pred             eEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECC---------CEEECCEEEECC
Confidence                         124566777888888999999999999987541   2324444322         257899999999


Q ss_pred             Cc
Q psy11185        112 GS  113 (312)
Q Consensus       112 G~  113 (312)
                      |.
T Consensus       165 G~  166 (401)
T 2gqf_A          165 GG  166 (401)
T ss_dssp             CC
T ss_pred             CC
Confidence            95

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.96  E-value=0.027  Score=53.12  Aligned_cols=35  Identities=37%  Similarity=0.530  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|++|||+|..|+.+|..+.+.|.+|+++|+..
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            35899999999999999999999999999999754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.95  E-value=0.00069  Score=65.20  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHH-----CCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA-----HGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~-----~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+     .|.+++++|+..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            36799999999999999999999     899999999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.91  E-value=0.0028  Score=56.79  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC----------------c------------------------c-----------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL----------------R------------------------G-----------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l----------------~------------------------~-----------   47 (312)
                      ..|+.+|..|++.|.+|+|+|+. ..-                .                        +           
T Consensus        16 ~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   95 (399)
T 2x3n_A           16 IGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSV   95 (399)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEEEEEETTSS
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCEEEecchHHh
Confidence            36899999999999999999983 320                0                        0           


Q ss_pred             ---------chHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCee--EEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         48 ---------FDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKL--KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        48 ---------~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                               ....+.+.+.+.+++. |+++++++++++++.++++ +  .+.+.++        ..+.+|.||.+.|...
T Consensus        96 ~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g--------~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A           96 DARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDG--------RVLRPRVVVGADGIAS  166 (399)
T ss_dssp             CGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTS--------CEEEEEEEEECCCTTC
T ss_pred             cccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCC--------CEEECCEEEECCCCCh
Confidence                     0135667777778777 9999999999999875544 5  6666554        4688999999999744


Q ss_pred             H
Q psy11185        116 L  116 (312)
Q Consensus       116 l  116 (312)
                      .
T Consensus       167 ~  167 (399)
T 2x3n_A          167 Y  167 (399)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.89  E-value=0.0036  Score=57.20  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+.+.+.+.+++.||+++++++++++..+.+....|.+.++        ..+.+|.||++.|...
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G--------~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--------EVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--------CEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCC--------CEEECCEEEECCCCCc
Confidence            345566777888899999999999999864332245655443        3578999999999633

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.77  E-value=0.0057  Score=58.20  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCc------------------------c----------------------------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLR------------------------G----------------------------   47 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~------------------------~----------------------------   47 (312)
                      .|+++|..+++.|.+|+|+|+. ..+.                        +                            
T Consensus        39 AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~~kgpav~~~r  118 (651)
T 3ces_A           39 AGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATR  118 (651)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEESTTSCGGGCEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhcccCcccccch
Confidence            6899999999999999999984 2110                        0                            


Q ss_pred             --ch-HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------
Q psy11185         48 --FD-QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------  113 (312)
Q Consensus        48 --~~-~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------  113 (312)
                        .| ..+.+.+.+.+++ .||++ +++.++.+..+++....|.+.+|        ..+.+|.||+++|.          
T Consensus       119 ~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG--------~~I~Ad~VVLATGt~s~~~~i~G~  189 (651)
T 3ces_A          119 AQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMG--------LKFRAKAVVLTVGTFLDGKIHIGL  189 (651)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTS--------EEEEEEEEEECCSTTTCCEEECC-
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCC--------CEEECCEEEEcCCCCccCccccCc
Confidence              01 2355666777777 69999 57889888754333234555443        46889999999994          


Q ss_pred             -----------chHHHHHHHHHCCCcEEEEe
Q psy11185        114 -----------GGLAAAKEAAAHGRKVIVLD  133 (312)
Q Consensus       114 -----------~gl~~a~~~~~~~~~~~~ve  133 (312)
                                 .++.++..+.+.|.++..+.
T Consensus       190 ~~~~~griGg~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          190 DNYSGGRAGDPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             ------------CCHHHHHHHTTTCCEEEEC
T ss_pred             ccCCCCCccchhhhHHHHHHHhcCCeEEEec
Confidence                       25577777778887776654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.64  E-value=0.0013  Score=59.50  Aligned_cols=90  Identities=10%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc--------c----hH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS--------G----GL  116 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~--------~----gl  116 (312)
                      +..+...+...+++.| +|++++.|++++..+++ +.|.+.++        .++.+|.||++.|+        .    ..
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~-v~v~~~~g--------~~~~ad~vi~a~~~~~l~~i~~~p~l~~~  272 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV-VNVTVKDG--------HAFQAHSVIVATPMNTWRRIVFTPALPER  272 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS-EEEEETTS--------CCEEEEEEEECSCGGGGGGSEEESCCCHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCcchHhheeeCCCCCHH
Confidence            4444555666666778 99999999999865444 56666544        46899999999992        1    11


Q ss_pred             HHHHHHHHC-CCcEEEEeccCCCCCCcccccCCc
Q psy11185        117 AAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       117 ~~a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      .... +... ....+.++...+++.+++|+.||.
T Consensus       273 ~~~~-~~~~~~~~~~kv~~~~~~~~~~i~~~~d~  305 (431)
T 3k7m_X          273 RRSV-IEEGHGGQGLKILIHVRGAEAGIECVGDG  305 (431)
T ss_dssp             HHHH-HHHCCCCCEEEEEEEEESCCTTEEEEBSS
T ss_pred             HHHH-HHhCCCcceEEEEEEECCCCcCceEcCCC
Confidence            1111 1222 224566666667778999999985

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.55  E-value=0.0045  Score=55.25  Aligned_cols=88  Identities=17%  Similarity=0.271  Sum_probs=63.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CC-----Cc-----------------------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VP-----LR-----------------------------------------------   46 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~-----l~-----------------------------------------------   46 (312)
                      ..|+.+|..|++.|.+|+|+|+. ..     .+                                               
T Consensus        12 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (394)
T 1k0i_A           12 PSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRL   91 (394)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEEEEECHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCceEEeccccc
Confidence            47899999999999999999983 21     00                                               


Q ss_pred             --c------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE-eeccccccCCCccccccEEEEecCc
Q psy11185         47 --G------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY-KNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        47 --~------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                        .      ...++.+.+.+.+.+.|+++++++++++++.++++.+.+.+ .++..      .++.+|.||.+.|.
T Consensus        92 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~------~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           92 SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGER------LRLDCDYIAGCDGF  161 (394)
T ss_dssp             HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEE------EEEECSEEEECCCT
T ss_pred             cCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcE------EEEEeCEEEECCCC
Confidence              0      01345566677777789999999999999864333456776 44421      26889999999996

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.45  E-value=0.011  Score=55.69  Aligned_cols=59  Identities=12%  Similarity=0.197  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+++.||+++++++++++..+.++.+ .+.+.+.+. .   ...+.+|.||+++|.
T Consensus       256 ~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-~---~~~i~a~~VVlAtGg  315 (571)
T 1y0p_A          256 HVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYK-G---YYWVKADAVILATGG  315 (571)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTT-E---EEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCC-c---EEEEECCeEEEeCCC
Confidence            4556667777888999999999999987543433 355553111 0   035789999999985

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.42  E-value=0.022  Score=54.03  Aligned_cols=100  Identities=10%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCc------------------------cc---------------------------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLR------------------------GF---------------------------   48 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~------------------------~~---------------------------   48 (312)
                      .|+++|..+++.|.+|+|+|+. ..+.                        +.                           
T Consensus        38 AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~~kGpav~~~r  117 (637)
T 2zxi_A           38 AGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPR  117 (637)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEESTTSCGGGCEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecccccCccccchh
Confidence            6799999999999999999984 2110                        00                           


Q ss_pred             ---h-HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------
Q psy11185         49 ---D-QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------  113 (312)
Q Consensus        49 ---~-~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------  113 (312)
                         | ..+.+.+.+.+++ .||++ +++.++.+..+++....|.+.++        ..+.+|.||+++|.          
T Consensus       118 ~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG--------~~i~AdaVVLATG~~s~~~~~~G~  188 (637)
T 2zxi_A          118 AQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLG--------VEYKTKAVVVTTGTFLNGVIYIGD  188 (637)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTS--------CEEECSEEEECCTTCBTCEEEETT
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCC--------cEEEeCEEEEccCCCccCceeccc
Confidence               0 1345566667777 59999 57889888754333234655544        46889999999994          


Q ss_pred             -----------chHHHHHHHHHCCCcE
Q psy11185        114 -----------GGLAAAKEAAAHGRKV  129 (312)
Q Consensus       114 -----------~gl~~a~~~~~~~~~~  129 (312)
                                 .+..++..+.+.|..+
T Consensus       189 ~~~~~Gr~G~~~A~~la~~L~~lG~~v  215 (637)
T 2zxi_A          189 KMIPGGRLGEPRSEGLSDFYRRFDFPL  215 (637)
T ss_dssp             EEEECSBTTBCCBCTHHHHHHHTTCCC
T ss_pred             eecCCCCCCchhHHHHHHHHHhcCCce
Confidence                       2366777787777654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.39  E-value=0.0019  Score=59.80  Aligned_cols=37  Identities=32%  Similarity=0.503  Sum_probs=32.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~~  137 (312)
                      ...+|+||||+|++||.+|..|.+ .|.+++++|+...
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~   45 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET   45 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence            347899999999999999999986 5889999997643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.34  E-value=0.0066  Score=54.33  Aligned_cols=85  Identities=19%  Similarity=0.296  Sum_probs=59.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCcc------chHH-----------------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRG------FDQQ-----------------------------------------   51 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~------~~~~-----------------------------------------   51 (312)
                      ..|+.+|..|++.|.+|+|+|+. ...+.      +.+.                                         
T Consensus        15 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   94 (397)
T 2vou_A           15 ISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWR   94 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCCccccccCccc
Confidence            47899999999999999999984 43211      1222                                         


Q ss_pred             ------HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         52 ------MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        52 ------~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                            +.+.+.+.+  .|+++++++++++++.++++ +.+.+.++        .++.+|.||.+.|...
T Consensus        95 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A           95 FTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSET-VQMRFSDG--------TKAEANWVIGADGGAS  153 (397)
T ss_dssp             EEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSC-EEEEETTS--------CEEEESEEEECCCTTC
T ss_pred             ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCE-EEEEECCC--------CEEECCEEEECCCcch
Confidence                  222222222  37889999999999875444 66766654        4689999999999643

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=96.32  E-value=0.014  Score=52.00  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +.+.+.+.+++.|++++++++|++++..++....+...+         ..+.+|.||+++|...
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---------g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTR---------GTIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETT---------CCEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCC---------ceEECCEEEECCchhH
Confidence            444566667778999999999999986543323344332         2578999999999744

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.28  E-value=0.011  Score=55.61  Aligned_cols=58  Identities=10%  Similarity=0.050  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +.+.+.+.+++.||++++++.++++..+.++.+ .+.+.+.+. +   ...+.+|.||+++|.
T Consensus       252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-~---~~~i~A~~VVlAtGg  310 (566)
T 1qo8_A          252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHT-G---YYMIGAKSVVLATGG  310 (566)
T ss_dssp             HHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTT-E---EEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCC-c---EEEEEcCEEEEecCC
Confidence            445666777788999999999999986542433 455553111 0   025789999999984

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.25  E-value=0.014  Score=52.52  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=62.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCC---------cc-------------------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPL---------RG-------------------------------------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l---------~~-------------------------------------------   47 (312)
                      ..|+-+|..|++.|.+|+|+|++...         +.                                           
T Consensus        15 ~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (421)
T 3nix_A           15 PAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFS   94 (421)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEEEEETTSCSS
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeEEEeehhhcC
Confidence            36899999999999999999984210         00                                           


Q ss_pred             ---------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         48 ---------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        48 ---------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                               ....+.+.+.+.+++.|++++.++++++++..+++ ..+.+...+.    ...++.+|.||.+.|...
T Consensus        95 ~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~-~~v~v~~~~g----~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A           95 NGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTD-SVTTIEDING----NKREIEARFIIDASGYGR  166 (421)
T ss_dssp             CSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTE-EEEEEEETTS----CEEEEEEEEEEECCGGGC
T ss_pred             CCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCC----CEEEEEcCEEEECCCCch
Confidence                     01245566677777789999999999999865443 3344432211    002589999999999755

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.22  E-value=0.02  Score=53.97  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+++.||++++++.++++..+.++.+ .|.+.+.+. .   ...+.+|.||+++|.
T Consensus       256 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G-~---~~~i~A~~VVlAtGg  315 (572)
T 1d4d_A          256 HVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYT-G---YYVIKADAVVIAAGG  315 (572)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTT-E---EEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCC-c---EEEEEcCEEEEeCCC
Confidence            4556667777888999999999999976441333 455553111 0   035789999999994

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.21  E-value=0.027  Score=49.77  Aligned_cols=57  Identities=11%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             HHHHHHHHhccceEEEeeceeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         53 AKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        53 ~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      .+.+.+.+++.|++++.++++++++.+++. +. |...+         .++.+|.||+++|.....+.
T Consensus       152 ~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-v~gv~~~~---------g~i~a~~VV~A~G~~s~~l~  209 (382)
T 1y56_B          152 TTAFAVKAKEYGAKLLEYTEVKGFLIENNE-IKGVKTNK---------GIIKTGIVVNATNAWANLIN  209 (382)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESSSB-EEEEEETT---------EEEECSEEEECCGGGHHHHH
T ss_pred             HHHHHHHHHHCCCEEECCceEEEEEEECCE-EEEEEECC---------cEEECCEEEECcchhHHHHH
Confidence            344556677789999999999999865433 33 54432         25789999999997543333

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.11  E-value=0.017  Score=51.15  Aligned_cols=58  Identities=12%  Similarity=0.046  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                      .+.+.+.+.+++.|++++++++|++++..++. +.+...+         ..+.+|.||+++|.....+
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~-~~v~~~~---------g~~~a~~vV~A~G~~s~~l  222 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPS---------GDVWANHVVVASGVWSGMF  222 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECSSSS-EEEEETT---------EEEEEEEEEECCGGGTHHH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEECCE-EEEEcCC---------ceEEcCEEEECCChhHHHH
Confidence            45666777888889999999999999865443 4444322         2578999999999754333

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.10  E-value=0.019  Score=53.54  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCC---eeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG---KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+...+.+.+++.|+++++++++++++.++++   .+.+.+.++++.     .++.+|.||.+.|...
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~-----~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGE-----YDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEE-----EEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCe-----EEEEeCEEEECCCCcc
Confidence            356667777788889999999999999876541   467777665321     4688999999999744

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=96.06  E-value=0.02  Score=52.18  Aligned_cols=92  Identities=12%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC-----cc----------------------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL-----RG----------------------------------------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l-----~~----------------------------------------------   47 (312)
                      ..|+.+|..|++.|.+|+|+|+. ..-     .+                                              
T Consensus        16 ~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (453)
T 3atr_A           16 FAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTVNGEGF   95 (453)
T ss_dssp             HHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCceEEeECCCcE
Confidence            47899999999999999999983 210     00                                              


Q ss_pred             -c-hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         48 -F-DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        48 -~-~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                       . -..+.+.+.+.+.+.|++++++++++++..+++....|.+.+...+.   ..++.+|.||.+.|..
T Consensus        96 ~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~---~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           96 ELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNE---ELTVYSKVVVEATGYS  161 (453)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTE---EEEEECSEEEECCGGG
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCc---eEEEEcCEEEECcCCc
Confidence             0 13466677777778899999999999988654332235565310010   0367899999999963

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.04  E-value=0.005  Score=55.66  Aligned_cols=33  Identities=42%  Similarity=0.733  Sum_probs=30.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|+||||+|++|+.+|..|.+.|.+++++|+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            699999999999999999999999999999743

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.04  E-value=0.02  Score=50.39  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+.+.+.+.+++.|++++.+++|++++..+++ +.+...+         ..+.+|.||+++|..
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~---------g~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETAD---------GEYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESS---------CEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECC---------CeEEcCEEEEcCCcc
Confidence            34455666777889999999999999865443 4444432         247899999999963

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.98  E-value=0.1  Score=50.92  Aligned_cols=35  Identities=34%  Similarity=0.533  Sum_probs=31.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|++|||+|++|+.+|..|.+.|.+++++|...
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~  369 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD  369 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            35799999999999999999999999999999754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=95.91  E-value=0.026  Score=53.44  Aligned_cols=61  Identities=18%  Similarity=0.303  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEee-ccccccCCCccccccEEEEecCcchH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKN-VAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                      ..+.+.+.+.+++.||+++.+++|++++...++...|.+.+ +..      .++.+|.||.+.|..+.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~------~~i~AdlVV~AdG~~S~  189 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGES------VTVESDFVIDAGGSGGP  189 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEE------EEEEESEEEECCGGGCH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCce------EEEEcCEEEECCCCcch
Confidence            34566677778889999999999999986434445677763 311      36899999999997554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.87  E-value=0.007  Score=55.34  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .++|+||||+|.+|+.+|..|.+.|.+|+++|++..
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~   45 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   45 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            468999999999999999999999999999998653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.67  E-value=0.02  Score=49.94  Aligned_cols=42  Identities=17%  Similarity=0.171  Sum_probs=32.7

Q ss_pred             cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .|+++++++.|++++..+++ +.|.+.++        ..+.+|.||++..+
T Consensus       122 ~g~~i~~~~~V~~i~~~~~~-~~v~~~~g--------~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          122 SGAEVYFRHRVTQINLRDDK-WEVSKQTG--------SPEQFDLIVLTMPV  163 (342)
T ss_dssp             HTCEEESSCCEEEEEECSSS-EEEEESSS--------CCEEESEEEECSCH
T ss_pred             cCCEEEeCCEEEEEEEcCCE-EEEEECCC--------CEEEcCEEEECCCH
Confidence            38999999999999875544 56666554        35689999999984

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.65  E-value=0.024  Score=50.79  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+.+  +++++++++++++.+++ .+.+.+.++        +++.+|+||.+.|.
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~a~~vV~AdG~  179 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDAD-GVTVWFTDG--------SSASGDLLIAADGS  179 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETT-EEEEEETTS--------CEEEESEEEECCCT
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCC-cEEEEEcCC--------CEEeeCEEEECCCc
Confidence            344555555554  78999999999987544 366766655        56899999999996

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.61  E-value=0.029  Score=52.52  Aligned_cols=85  Identities=14%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CC--------Ccc-----------------------------chHHHHHHHHHHHhc
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VP--------LRG-----------------------------FDQQMAKLICEEMAE   62 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~--------l~~-----------------------------~~~~~~~~~~~~l~~   62 (312)
                      .|+.+|..|++.|.+|+|+|+. .+        .++                             ..+++.+++....++
T Consensus        27 aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~  106 (542)
T 1w4x_A           27 SGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADK  106 (542)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence            6789999999999999999984 32        010                             024566777766665


Q ss_pred             cc--eEEEeeceeeEEEEcCC-CeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GG--VHFLHKCLPLSVTKLAD-GKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~g--i~~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+  +.++++++|.+++.+.+ +...|.+.++        .++.+|.||++.|.
T Consensus       107 ~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--------~~~~ad~vV~AtG~  152 (542)
T 1w4x_A          107 FDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--------DRIRARYLIMASGQ  152 (542)
T ss_dssp             TTGGGGEECSCCEEEEEEETTTTEEEEEETTC--------CEEEEEEEEECCCS
T ss_pred             cCCCceEEcCcEEEEEEEcCCCCeEEEEECCC--------CEEEeCEEEECcCC
Confidence            44  67888999999876543 3345665544        46789999999994

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=95.61  E-value=0.037  Score=49.43  Aligned_cols=40  Identities=13%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         65 VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        65 i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +++++++++++++.++++ +.+.+.++        .++.+|.||.+.|.
T Consensus       141 ~~i~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          141 DTVIWDRKLVMLEPGKKK-WTLTFENK--------PSETADLVILANGG  180 (398)
T ss_dssp             TSEEESCCEEEEEECSSS-EEEEETTS--------CCEEESEEEECSCT
T ss_pred             CEEEECCEEEEEEECCCE-EEEEECCC--------cEEecCEEEECCCc
Confidence            578889999999875443 56666654        46789999999996

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.45  E-value=0.0077  Score=55.57  Aligned_cols=33  Identities=36%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++||||+|.+||.+|..|.+.|.+|+++|+...
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            789999999999999999999999999998653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.41  E-value=0.014  Score=51.39  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=32.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|++|||+|.+|+++|..|.+.+.+++++|+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            46899999999999999999999999999999764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=95.39  E-value=0.074  Score=49.18  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC--------------------------c---------------------cc----
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL--------------------------R---------------------GF----   48 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l--------------------------~---------------------~~----   48 (312)
                      .|+-+|..|++.|.+|+|+|+. ...                          .                     .+    
T Consensus        22 aGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (500)
T 2qa1_A           22 AGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAK  101 (500)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGGGSTTGGGCEE
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccccCCCCCCcee
Confidence            6889999999999999999973 211                          0                     00    


Q ss_pred             ---hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         49 ---DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        49 ---~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                         -..+.+.+.+.+++.|+++++++++++++.+++ .+.+.+.++...     .++.+|.||.+-|...
T Consensus       102 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~~~g~-----~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          102 TVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GVTVEVRGPEGK-----HTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EEEEEEEETTEE-----EEEEESEEEECCCTTC
T ss_pred             ecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eEEEEEEcCCCC-----EEEEeCEEEECCCcch
Confidence               134556667777778999999999999987544 466777665210     3678999999999643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=95.35  E-value=0.071  Score=49.29  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC--------------------------c---------------------cc----
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL--------------------------R---------------------GF----   48 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l--------------------------~---------------------~~----   48 (312)
                      .|+-+|..|++.|.+|+|+|+. ...                          .                     .+    
T Consensus        23 aGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (499)
T 2qa2_A           23 AGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDFGVLEGAHYGVK  102 (499)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEGGGSTTCCCEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecccccCCCCCCceE
Confidence            7889999999999999999973 221                          0                     00    


Q ss_pred             ---hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         49 ---DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        49 ---~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                         -..+.+.+.+.+++.|+++++++++++++.++++ +.+.+.++...     .++.+|.||.+-|..
T Consensus       103 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~-----~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          103 AVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-VVVEVEGPDGP-----RSLTTRYVVGCDGGR  165 (499)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-EEEEEECSSCE-----EEEEEEEEEECCCTT
T ss_pred             ecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCc-----EEEEeCEEEEccCcc
Confidence               1445566677777789999999999999876544 66777665210     367899999999963

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.34  E-value=0.012  Score=53.41  Aligned_cols=35  Identities=31%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   38 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD   38 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            35799999999999999999999999999999764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.29  E-value=0.03  Score=52.74  Aligned_cols=89  Identities=20%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CC-------------------------------------Ccc---------------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VP-------------------------------------LRG---------------   47 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~-------------------------------------l~~---------------   47 (312)
                      .|+-+|..|++.|.+|+|+|+. ..                                     +..               
T Consensus        60 aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (570)
T 3fmw_A           60 VGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQGLDFGLVDTRH  139 (570)
T ss_dssp             HHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTCCBGGGSCCSC
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccccccccccCCCC
Confidence            6899999999999999999973 21                                     000               


Q ss_pred             ------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         48 ------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        48 ------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                            ....+.+.+.+.+++.|++++.++++++++.++++ +.+.+.+.+..     .++.+|.||.+.|...
T Consensus       140 ~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~-v~v~~~~~~G~-----~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          140 PYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA-VEVTVAGPSGP-----YPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC-EEEEEEETTEE-----EEEEESEEEECSCSSC
T ss_pred             CeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe-EEEEEEeCCCc-----EEEEeCEEEEcCCCCc
Confidence                  12456677777788889999999999998865444 56666322110     3678999999999633

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=95.24  E-value=0.04  Score=52.35  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCCc------------------------c----------------------------
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPLR------------------------G----------------------------   47 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l~------------------------~----------------------------   47 (312)
                      .|+++|..|++.|.+|+|+|+. ..+.                        +                            
T Consensus        32 AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~~kgpav~~~r  111 (641)
T 3cp8_A           32 AGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPR  111 (641)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECSSSCTTTCEEE
T ss_pred             HHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcccccCccccchh
Confidence            6899999999999999999984 1110                        0                            


Q ss_pred             --ch-HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecC
Q psy11185         48 --FD-QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        48 --~~-~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                        .| ..+...+.+.+++ .||+++ +..+..+..++ +.+. |.+.++        ..+.+|.||+++|
T Consensus       112 ~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~-g~V~GV~t~~G--------~~i~Ad~VVLATG  171 (641)
T 3cp8_A          112 AQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANS-GKFSSVTVRSG--------RAIQAKAAILACG  171 (641)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTS--------CEEEEEEEEECCT
T ss_pred             hhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecC-CEEEEEEECCC--------cEEEeCEEEECcC
Confidence              01 1445666677777 499995 56788876543 3333 555443        4688999999988

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=95.21  E-value=0.012  Score=54.72  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             cccEEEEecCcchHHHHHHHHH-CCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~~  137 (312)
                      +||+||||+|.+|..+|..|.+ .+.+|+++|....
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            7999999999999999999987 5568999997643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=95.20  E-value=0.11  Score=48.94  Aligned_cols=66  Identities=12%  Similarity=0.202  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeec---ccccc----CCCccccccEEEEecCcchH
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNV---AEVRQ----DNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~---~~~~~----~~~~~~~~d~vivg~G~~gl  116 (312)
                      .+.+.+.+.+++.||++++++.+.++..++++.+ .|.+.+.   ..+..    ....++.+|.||.+.|..+.
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            4556677778888999999999999987554544 3655420   00000    00146889999999997543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.19  E-value=0.01  Score=53.78  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ....|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            345799999999999999999999999999999754

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.19  E-value=0.013  Score=54.38  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~  137 (312)
                      ...|++|||+|.+||.+|..|.+.| .+++++|...+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~r   43 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence            3579999999999999999999999 89999998643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.18  E-value=0.054  Score=47.73  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-------------------------------------c--------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-------------------------------------G--------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-------------------------------------~--------------   47 (312)
                      ..|+-+|..|++.|++|+|+|| +.+-.                                     .              
T Consensus        14 paGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (397)
T 3oz2_A           14 PGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPIILQSEKAGN   93 (397)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEEEECSSSSC
T ss_pred             HHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEeeccccccCC
Confidence            4689999999999999999997 33200                                     0              


Q ss_pred             ------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         48 ------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        48 ------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                            .-..+.+.+.+...+.|+++++++.+..+..+.+....+.......     ..++.+|+||-+.|...
T Consensus        94 ~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~-----~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           94 EVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNE-----IVDVRAKMVIAADGFES  162 (397)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTE-----EEEEEEEEEEECCCTTC
T ss_pred             ceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeeccccc-----ceEEEEeEEEeCCcccc
Confidence                  0134556666777788999999999998876544322333322211     14678999999999644

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.12  E-value=0.062  Score=48.16  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhc-cc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         51 QMAKLICEEMAE-GG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        51 ~~~~~~~~~l~~-~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .+.+.+.+.+.+ .| +++++++++++++. +++ +.+.+.+...+.   ..++.+|+||.+.|...
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~v~~~~~~~g~---~~~~~ad~vV~AdG~~S  169 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RVLIGARDGHGK---PQALGADVLVGADGIHS  169 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EEEEEEEETTSC---EEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cEEEEecCCCCC---ceEEecCEEEECCCccc
Confidence            445566666665 35 68999999999987 444 567776511010   03678999999999644

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.11  E-value=0.02  Score=51.36  Aligned_cols=36  Identities=28%  Similarity=0.537  Sum_probs=32.2

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+|++|||+|++|+.+|..+.+.+.+++++|+..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            446899999999999999999999999999999753

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.10  E-value=0.078  Score=49.12  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+.+.+.+.+++.||+++.++++++++..++....+.+...+.    ...++.+|.||.+.|..
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG----~~~~i~ad~VI~AdG~~  171 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEG----VELMAHARFIVDASGNR  171 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSS----CEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCC----CEEEEEcCEEEECCCcc
Confidence            4556677777788999999999999987543322355543211    00368899999999963

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.06  E-value=0.017  Score=52.00  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      |++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            79999999999999999999999999999864

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=94.99  E-value=0.019  Score=53.34  Aligned_cols=35  Identities=40%  Similarity=0.565  Sum_probs=31.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|++|||+|.+|+.+|..|.+.|.+++++|....
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   38 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   38 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999999999998643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.95  E-value=0.022  Score=51.21  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      +.|++|||+|.+|+.+|..|.+.| .+++++|+..
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            579999999999999999999999 8999999754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=94.88  E-value=0.019  Score=52.53  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=31.3

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ....|++|||+|.+|+.+|..|.+.|.+++++|+...
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~   50 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   50 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            3467999999999999999999999999999998653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=94.83  E-value=0.021  Score=51.24  Aligned_cols=34  Identities=35%  Similarity=0.593  Sum_probs=31.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~  136 (312)
                      ++|++|||+|.+|+.+|..|.+. |.+++++|+..
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~   41 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP   41 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            57999999999999999999988 88999999754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=94.68  E-value=0.021  Score=51.35  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|||+|.+|+++|..|.+.|.+++++|+...
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~   34 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPI   34 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            899999999999999999999999999998643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=94.59  E-value=0.025  Score=50.08  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=30.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|++|||+|.+|+.+|..+.+.+.+++++|+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   34 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999999999999999999899999999754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.58  E-value=0.043  Score=50.49  Aligned_cols=58  Identities=3%  Similarity=-0.015  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ...+.+.+.+.+++.|++|++++.|++|+.+++....|.+.++        +++.+|.||.++++.
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g--------~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDG--------RRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTS--------CEEECSCEEECCC--
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCC--------cEEEcCEEEECCCHH
Confidence            4567788889999999999999999999875544345777776        678999999999863

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=94.56  E-value=0.02  Score=50.94  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.  |.+++++|+...
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            799999999999999999988  899999998654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=94.54  E-value=0.073  Score=46.45  Aligned_cols=64  Identities=8%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      ..+.+.+.+.+++.|++++++++|++++.++++.+.+.+.+++.      ..+.+|.||+++|.....++
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~------~~~~a~~VV~A~G~~s~~l~  213 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEP------MTLSCRVLINAAGLHAPGLA  213 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSC------EEEEEEEEEECCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCce------eEEEeCEEEECCCcchHHHH
Confidence            46777788888999999999999999987655435566554421      36889999999997544433

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.52  E-value=0.026  Score=52.02  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=31.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++|++|||+|.+|+.+|..|.+.|.+++++|....
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~   73 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDR   73 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            37999999999999999999999999999997643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.30  E-value=0.031  Score=51.37  Aligned_cols=36  Identities=39%  Similarity=0.501  Sum_probs=32.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...|++|||+|.+|+.+|..|.+.|.+++++|+...
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~   45 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTR   45 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            357999999999999999999999999999997643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.24  E-value=0.019  Score=52.28  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC------CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG------RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~------~~~~~ve~~~  136 (312)
                      ..|++|||+|.+|+++|..|.+.|      .+++++|...
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            479999999999999999999988      7899999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=94.19  E-value=0.28  Score=42.85  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             hhhhhhHhhhcc--CCeEEEEEccCCCc---------------------------------------cchHHHHHHHHHH
Q psy11185         21 SGLECAGFLNGL--GFNATVMIRSVPLR---------------------------------------GFDQQMAKLICEE   59 (312)
Q Consensus        21 ig~E~A~~l~~~--g~~vtl~~~~~~l~---------------------------------------~~~~~~~~~~~~~   59 (312)
                      .|+.+|..|++.  |.+|+|+|+...+.                                       ....++.+.+.+.
T Consensus        90 AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~d~~~~L~~~  169 (344)
T 3jsk_A           90 CGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSK  169 (344)
T ss_dssp             HHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecHHHHHHHHHHH
Confidence            578999999998  99999999842111                                       0134555666677


Q ss_pred             Hhc-cceEEEeeceeeEEEEcC
Q psy11185         60 MAE-GGVHFLHKCLPLSVTKLA   80 (312)
Q Consensus        60 l~~-~gi~~~~~~~v~~~~~~~   80 (312)
                      +.+ .||+++.++.+..+..+.
T Consensus       170 a~~~~gV~i~~~~~V~dLi~~~  191 (344)
T 3jsk_A          170 VLQRPNVKLFNATTVEDLITRK  191 (344)
T ss_dssp             HHTCTTEEEEETEEEEEEEEEE
T ss_pred             HHhCCCCEEEeCCEEEEEEecC
Confidence            776 599999999998887543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=94.17  E-value=0.048  Score=49.40  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|++|||+|.+|+.+|..+.+.|.+++++|+..
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~   39 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP   39 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            36799999999999999999999999999999764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.15  E-value=0.037  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ...|++|||+|.+|+.+|..|.+.|.+++++|..
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            3569999999999999999999999999999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=94.01  E-value=0.023  Score=49.77  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCC------CcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHG------RKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~------~~~~~ve~~~  136 (312)
                      |++|||+|.+|+++|..|.+.+      .+++++|+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            8999999999999999999887      7899999764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=93.96  E-value=0.046  Score=50.17  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..+|++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~   53 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNP   53 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccC
Confidence            46899999999999999999999999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=93.82  E-value=0.045  Score=52.14  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|++|+.+|..+.+.+.+++++|+..
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~   79 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   79 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence            46899999999999999999999999999999754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=93.68  E-value=0.38  Score=41.70  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             hhhhhhHhhhcc--CCeEEEEEcc-CCCcc--------------------------------------chHHHHHHHHHH
Q psy11185         21 SGLECAGFLNGL--GFNATVMIRS-VPLRG--------------------------------------FDQQMAKLICEE   59 (312)
Q Consensus        21 ig~E~A~~l~~~--g~~vtl~~~~-~~l~~--------------------------------------~~~~~~~~~~~~   59 (312)
                      .|+.+|..|++.  |++|+|+|+. ..-.+                                      ...++...+.+.
T Consensus        76 aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~~~~~~L~~~  155 (326)
T 2gjc_A           76 SGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSK  155 (326)
T ss_dssp             HHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcchHHHHHHHHHH
Confidence            578999999998  9999999983 32100                                      234555666666


Q ss_pred             Hhc-cceEEEeeceeeEEEEc
Q psy11185         60 MAE-GGVHFLHKCLPLSVTKL   79 (312)
Q Consensus        60 l~~-~gi~~~~~~~v~~~~~~   79 (312)
                      +.+ .||+++.++.+..+..+
T Consensus       156 a~~~~GV~i~~~~~V~~Ll~~  176 (326)
T 2gjc_A          156 VLQLPNVKLFNATCVEDLVTR  176 (326)
T ss_dssp             HHTSTTEEEETTEEEEEEEEC
T ss_pred             HHHhcCcEEEecceeeeeeec
Confidence            666 49999999999998765

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=93.64  E-value=0.037  Score=51.69  Aligned_cols=34  Identities=32%  Similarity=0.521  Sum_probs=31.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|.+|+.+|..|.+ +.+|+++|...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~   58 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGS   58 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSB
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCC
Confidence            46899999999999999999999 88999999754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.63  E-value=0.041  Score=50.26  Aligned_cols=33  Identities=33%  Similarity=0.481  Sum_probs=30.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC--cEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~  136 (312)
                      .|++|||+|.+|+++|..|.+.+.  +++++|...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            589999999999999999999998  999999754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=93.53  E-value=0.24  Score=45.37  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+++.||+++.++.+ ++..+.+....+.+.+..       ..+.+|.||+++|.
T Consensus       120 ~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~-------g~~~a~~VVlAtGg  174 (472)
T 2e5v_A          120 EIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRG-------LVEDVDKLVLATGG  174 (472)
T ss_dssp             HHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTE-------EECCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCC-------CeEEeeeEEECCCC
Confidence            34455666667789999999999 886543321233443211       23569999999994

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.47  E-value=0.21  Score=44.18  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         65 VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        65 i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+++++++++++...++.+.+.+.+|        +++++|+||-+-|..
T Consensus       124 ~~v~~~~~v~~~~~~~~~~v~v~~~dG--------~~~~adlvVgADG~~  165 (412)
T 4hb9_A          124 NTIQWNKTFVRYEHIENGGIKIFFADG--------SHENVDVLVGADGSN  165 (412)
T ss_dssp             TTEECSCCEEEEEECTTSCEEEEETTS--------CEEEESEEEECCCTT
T ss_pred             ceEEEEEEEEeeeEcCCCeEEEEECCC--------CEEEeeEEEECCCCC
Confidence            357788889988876666677888776        567899999888853

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=93.42  E-value=0.052  Score=50.04  Aligned_cols=35  Identities=34%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..|++|||+|.+|+.+|..|.+.|.+++++|....
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~   47 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   47 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence            57999999999999999999999999999997643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=93.35  E-value=0.13  Score=45.94  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhccceEEEeeceee---------EEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPL---------SVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA  118 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~  118 (312)
                      +...+.+.+++.|++++.+++++         +++.+++. +.|...+         ..+.+|.||+++|...-.+
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~-v~v~~~~---------g~i~a~~VV~A~G~~s~~l  239 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTH-QIVVHET---------RQIRAGVIIVAAGAAGPAL  239 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC--------CBCC---------EEEEEEEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCe-EEEEECC---------cEEECCEEEECCCccHHHH
Confidence            55566777788899999999998         77543222 2332221         2578999999999754333

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=93.12  E-value=0.059  Score=50.39  Aligned_cols=35  Identities=34%  Similarity=0.660  Sum_probs=31.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+||||+|++|+.+|..|.+.+.+++++|...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            46899999999999999999999999999999754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=93.08  E-value=0.077  Score=47.25  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=30.1

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .|++|||+|.+|+.+|..+.+.+.+++++|...
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            689999999999999999999888999999754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.03  E-value=0.063  Score=49.38  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...|++|||+|.+|+.+|..|.+.|.+++++|...
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            35799999999999999999999999999999754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=92.99  E-value=0.086  Score=48.52  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      ..+|++|||+|++|+.+|..|.+.+ .+++++|+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~   43 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND   43 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            4679999999999999999999988 6899999754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=92.94  E-value=0.049  Score=51.35  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=31.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~  137 (312)
                      .++|+||||+|.+|+.+|..|.+.+ .+|+++|....
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            3689999999999999999999887 48999997654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=92.90  E-value=0.057  Score=49.32  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~  136 (312)
                      .+|++|||+|.+|+.+|..|.+.+  .+++++|...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            469999999999999999999988  8899999754

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=92.63  E-value=0.085  Score=46.74  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             hhhhhhhHhhhcc--CCeEEEEEcc-CC----------------------C-cc--------------------------
Q psy11185         20 DSGLECAGFLNGL--GFNATVMIRS-VP----------------------L-RG--------------------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~--g~~vtl~~~~-~~----------------------l-~~--------------------------   47 (312)
                      ..|+.+|..|++.  |.+|+|+|+. .+                      . ..                          
T Consensus        10 ~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   89 (381)
T 3c4a_A           10 PAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTG   89 (381)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESSSEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCCeeEEecCC
Confidence            4789999999999  9999999983 32                      0 00                          


Q ss_pred             ------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         48 ------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        48 ------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                            ...++.+.+.+.+++.|+++++++++++++..                    .++.+|.||.+.|..
T Consensus        90 ~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--------------------~~~~ad~vV~AdG~~  142 (381)
T 3c4a_A           90 VLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL--------------------PLADYDLVVLANGVN  142 (381)
T ss_dssp             SCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC--------------------CGGGCSEEEECCGGG
T ss_pred             CceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc--------------------ccccCCEEEECCCCC
Confidence                  12456667777777778888888877765310                    124678888888853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.63  E-value=0.17  Score=45.66  Aligned_cols=56  Identities=13%  Similarity=0.131  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhccceEEEeec---eeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKC---LPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~---~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+...+.+.+++.|++|++++   .|+++...++ .+. |.+.++        ..+.+|.||+++|.-
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~-~v~gV~t~~G--------~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENN-DVKGAVTADG--------KIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETT-EEEEEEETTT--------EEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCC-eEEEEEECCC--------CEEECCEEEECCCCC
Confidence            4677778888888999999999   9999986433 343 665544        468999999999963

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=92.38  E-value=0.067  Score=50.44  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=30.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~  136 (312)
                      .+||+||||+|.+|+.+|..|.+. +.+|+++|...
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999874 66899999765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=92.22  E-value=0.12  Score=47.30  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      .+|++|||+|++|+.+|..+.+.+. +++++|...
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            5699999999999999999999998 899999754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=91.94  E-value=0.28  Score=44.99  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.| ++|++++.|++++..+++ +.|...++        ..+.+|.||+++|+
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~-v~v~~~~g--------~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-ARVTARDG--------REFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS-EEEEETTC--------CEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE-EEEEECCC--------CEEEcCEEEECCCH
Confidence            4567788888888888 999999999999865443 55655444        46789999999996

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=91.93  E-value=0.075  Score=49.94  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=30.2

Q ss_pred             cccEEEEecCcchHHHHHHHHH-CCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~  136 (312)
                      ++|+||||+|.+|+.+|..|.+ .+.+|+++|...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~   36 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGV   36 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCC
Confidence            5899999999999999999988 577899999754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=91.48  E-value=0.27  Score=43.92  Aligned_cols=55  Identities=13%  Similarity=0.054  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecCc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+.+.+.+.+++.|++|++++.|+++..++ +.+. |.+ ++        .++.+|.||+++|+
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~gv~~-~g--------~~~~ad~VV~a~~~  250 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIEN-GKAAGIIA-DD--------RIHDADLVISNLGH  250 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEE-TT--------EEEECSEEEECSCH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEEC-CEEEEEEE-CC--------EEEECCEEEECCCH
Confidence            35677888889999999999999999998754 3333 444 33        46889999999996

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.25  E-value=0.34  Score=42.42  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK  120 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~  120 (312)
                      ..+...+.+.+++.|+++++++.|++++.+++. +.|...+         ..+.+|.||+++|.-.-.+..
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~---------g~i~a~~VV~A~G~~s~~l~~  214 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDA---------GSYRAAVLVNAAGAWCDAIAG  214 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSS---------EEEEESEEEECCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCC---------CEEEcCEEEECCChhHHHHHH
Confidence            566677788888899999999999999875443 4444432         257899999999975444443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.94  E-value=0.41  Score=46.05  Aligned_cols=56  Identities=5%  Similarity=0.124  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCc-cccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTH-KYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~d~vivg~G~~  114 (312)
                      ..+...+.+.+++.|++++++++|++++.++++ +.|...++        . .+.+|.||+++|..
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G--------~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQS--------QAAKHHATVILATGHR  468 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-C--------CCCEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCC--------cEEEECCEEEECCCcc
Confidence            456667777888899999999999999875544 55555443        3 67899999999963

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=90.77  E-value=0.69  Score=43.13  Aligned_cols=56  Identities=18%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      +.+.+.+.+++.   +++++++++++.++++ +.+++.+...+.   ..++.+|.||.+.|..
T Consensus       140 l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v~v~~~~~~~G~---~~~i~a~~vVgADG~~  195 (549)
T 2r0c_A          140 LAPLLAEAVGER---LRTRSRLDSFEQRDDH-VRATITDLRTGA---TRAVHARYLVACDGAS  195 (549)
T ss_dssp             HHHHHHHHHGGG---EECSEEEEEEEECSSC-EEEEEEETTTCC---EEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHh---cccCcEEEEEEEeCCE-EEEEEEECCCCC---EEEEEeCEEEECCCCC
Confidence            444555555554   8889999999875544 667776521111   1367899999999963

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=90.47  E-value=0.38  Score=42.31  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      ..+.+.+.+.+++.|++++++++|++++..+++ +.+...+         ..+.+|.||+++|...
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~---------g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETAN---------GSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETT---------EEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-EEEEeCC---------CEEEeCEEEEecCccH
Confidence            577788888889999999999999999875443 4444322         2578999999999743

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=90.43  E-value=0.27  Score=43.97  Aligned_cols=55  Identities=11%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ...+.+.+.+.+++.|++|++++.|++++.++ +.+ | ..++        ..+.+|.||+++|+.
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~v-V-~~~g--------~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEE-KKV-Y-TRDN--------EEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTT-TEE-E-ETTC--------CEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEEC-CEE-E-EeCC--------cEEEeCEEEECCCHH
Confidence            46788888999999999999999999998643 333 3 3333        468899999999963

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=90.38  E-value=1.3  Score=41.95  Aligned_cols=60  Identities=10%  Similarity=0.052  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+...+.+.+.+.| |+++.++.+.++..+.+....+...+...+.   ...+.++.||+++|.
T Consensus       135 ~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~---~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT---LVQIRANAVVMATGG  195 (602)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTE---EEEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCc---EEEEEcCeEEECCCC
Confidence            34445556666678 9999999999987643322234333211110   025789999999994

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.34  E-value=0.36  Score=46.27  Aligned_cols=56  Identities=11%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+...+.+.+++.|++++++++|++++.++++ +.|...++        .++.+|.||+++|..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G--------~~i~Ad~VVlAtG~~  472 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDC-WLLNFAGD--------QQATHSVVVLANGHQ  472 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEETTS--------CEEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCe-EEEEECCC--------CEEECCEEEECCCcc
Confidence            355666777788899999999999999875443 45554443        458899999999963

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.19  E-value=0.26  Score=40.28  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=25.1

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..+++|+|||||.+|...+..|...+..|+|
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtV   59 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITV   59 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            4578899999999999777776666668876

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=90.09  E-value=0.19  Score=46.37  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+|++|+.+|..+.+.+.+++++|...
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            6899999999999999999999899999999754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=89.77  E-value=0.21  Score=46.24  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|++|||+|++|+.+|..+.+.+.+++++|...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            346899999999999999999999888999999653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=89.60  E-value=0.33  Score=43.05  Aligned_cols=30  Identities=37%  Similarity=0.492  Sum_probs=25.9

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+.+|+|||+|.+|+-+|..|...+.+|+|
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~V   72 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTI   72 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            456899999999999999999887777776

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=89.48  E-value=0.24  Score=47.43  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=31.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...|++|||+|++|+.+|..+.+.|.+++++|...
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~  140 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  140 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35799999999999999999999999999999754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=89.42  E-value=0.23  Score=45.59  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=26.2

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+++|+|||+|.+|+.+|..|...+.+|+|
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~v   61 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTV   61 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            456899999999999999999887778876

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.33  E-value=0.9  Score=39.27  Aligned_cols=42  Identities=10%  Similarity=0.127  Sum_probs=30.6

Q ss_pred             hhhhh-hhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEee
Q psy11185         20 DSGLE-CAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHK   70 (312)
Q Consensus        20 ~ig~E-~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~   70 (312)
                      .+||. +|..|.++|++|++.|+...    ++     ..+.|++.||+++.+
T Consensus        14 g~Gms~~A~~L~~~G~~V~~~D~~~~----~~-----~~~~L~~~gi~v~~g   56 (326)
T 3eag_A           14 GTFMGGLAAIAKEAGFEVSGCDAKMY----PP-----MSTQLEALGIDVYEG   56 (326)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSCC----TT-----HHHHHHHTTCEEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCCC----cH-----HHHHHHhCCCEEECC
Confidence            37786 89999999999999997422    11     134567789888754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=89.07  E-value=0.27  Score=46.42  Aligned_cols=35  Identities=31%  Similarity=0.524  Sum_probs=31.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~  136 (312)
                      .++|+||||+|++|+.+|..|.+ .+.+++++|...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~   58 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            46899999999999999999998 688999999754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=88.76  E-value=0.5  Score=43.23  Aligned_cols=57  Identities=11%  Similarity=-0.026  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .++.+.+.+.+++.|+++++++.|+++..+.++. ..|.+.+|        +.+.+|.||+++|..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G--------~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDG--------EIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTS--------CEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCC--------cEEECCEEEECCCcc
Confidence            4677788888999999999999999998633343 35666554        468999999999854

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=88.67  E-value=0.73  Score=43.13  Aligned_cols=65  Identities=15%  Similarity=-0.026  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA  117 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~  117 (312)
                      ..+...+.+.+.+.|++++.+++|+++...++....+.+.+..++..   ..+.+|.||.++|+-.-.
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~---~~i~A~~VV~AaG~~s~~  234 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTT---HTIYAKKVVNAAGPWVDT  234 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCE---EEEEEEEEEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCce---EEEECCEEEECCCcchHH
Confidence            45666677778889999999999999987544323566655222111   467899999999975433

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=88.65  E-value=0.32  Score=47.98  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ...+++|||+|++|+.+|..|.+.|.+++++|...
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~  311 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  311 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            35799999999999999999999999999999754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=88.45  E-value=0.92  Score=41.82  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCcccccc-EEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYD-LLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d-~vivg~G~  113 (312)
                      .+.+.+.+.+++.||+|++++.++++..+.++.+ .|.+.++..     ...+.+| .||+++|-
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~-----~~~i~A~k~VVlAtGG  262 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGK-----EVAVRARRGVVLATGS  262 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTE-----EEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCc-----EEEEEeCCeEEEeCCC
Confidence            7888888889999999999999999987534433 455554321     1357896 89999884

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=88.17  E-value=0.29  Score=45.71  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=31.2

Q ss_pred             ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~  136 (312)
                      ..+|+||||+|.+|+.+|..|.+. +.+++++|...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~   47 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP   47 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            468999999999999999999987 77999999754

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=87.99  E-value=0.85  Score=41.08  Aligned_cols=57  Identities=12%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEc--------------CCCee-EEEEeeccccccCCCccc--cccEEEEecC
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKL--------------ADGKL-KVQYKNVAEVRQDNTHKY--DYDLLVLGGG  112 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~--------------~~~~~-~v~~~~~~~~~~~~~~~~--~~d~vivg~G  112 (312)
                      ..+.+.+.+.+++.|++++.+++|++++.+              .++.+ .+...+         .++  .+|.||+++|
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~---------g~i~~~Ad~VV~AtG  251 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD---------GTRVEVGEKLVVAAG  251 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT---------SCEEEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC---------CEEeecCCEEEECCC
Confidence            477788888889999999999999999761              22322 343322         257  8999999999


Q ss_pred             cch
Q psy11185        113 SGG  115 (312)
Q Consensus       113 ~~g  115 (312)
                      ...
T Consensus       252 ~~s  254 (448)
T 3axb_A          252 VWS  254 (448)
T ss_dssp             GGH
T ss_pred             cCH
Confidence            743

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=86.49  E-value=1  Score=39.75  Aligned_cols=54  Identities=17%  Similarity=0.107  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+...+.+.+++.|++++++++|++++.++++ +.+... +        .++.+|.||+++|.-
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~v~t~-~--------g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTD-R--------GTYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEES-S--------CEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCe-EEEEEC-C--------CEEEcCEEEEcCCcC
Confidence            45566677778889999999999999865433 444322 1        357899999999964

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=86.46  E-value=1.3  Score=40.21  Aligned_cols=46  Identities=22%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeece
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCL   72 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~   72 (312)
                      .+|+.+|.+|.++|++|++.++...-  .++.     .+.|++.||+++++..
T Consensus        19 ~sG~s~A~~l~~~G~~V~~~D~~~~~--~~~~-----~~~L~~~gi~~~~g~~   64 (451)
T 3lk7_A           19 RSGEAAARLLAKLGAIVTVNDGKPFD--ENPT-----AQSLLEEGIKVVCGSH   64 (451)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEESSCGG--GCHH-----HHHHHHTTCEEEESCC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCccc--CChH-----HHHHHhCCCEEEECCC
Confidence            37999999999999999999974210  1121     3567778999876643

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=85.57  E-value=0.89  Score=41.22  Aligned_cols=54  Identities=15%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+.+.+.+.+++.|++|++++.|++++..+++...|.. ++        .++.+|.||+++++
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~--------~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RD--------SSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SS--------CEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CC--------eEEEcCEEEECCCH
Confidence            57778888888899999999999999875444244433 22        45789999999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=85.13  E-value=1.5  Score=43.13  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA  117 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~  117 (312)
                      ..+...+.+.+++.|+++++++.|++++..++....|...+         .++.+|.||+++|.-...
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~---------G~i~Ad~VV~AaG~~s~~  209 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTAD---------GVIPADIVVSCAGFWGAK  209 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT---------EEEECSEEEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECC---------cEEECCEEEECCccchHH
Confidence            36777788888899999999999999986443312344322         257899999999975433

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=84.74  E-value=1.4  Score=41.25  Aligned_cols=64  Identities=14%  Similarity=0.116  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      +..+...+.+.+.+.|++++.+++|+++..+++....|.+.+..++.   ...+.+|.||+++|+-.
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~---~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDE---VIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCC---EEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCC---EEEEEcCEEEECCChhH
Confidence            34556666677888999999999999998654332245554321110   02678999999999753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=84.56  E-value=1.5  Score=40.80  Aligned_cols=55  Identities=24%  Similarity=0.242  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         51 QMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      .+.+.+.+.+++. ||+++.+ +|++++.++++. ..|.+.++        .++.+|.||.+.|..
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G--------~~i~ad~vI~A~G~~  251 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATG--------RVFDADLFVDCSGFR  251 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTS--------CEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCC--------CEEECCEEEECCCCc
Confidence            4667777788888 9999999 999998644442 34555443        468999999999963

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=84.35  E-value=1.9  Score=39.63  Aligned_cols=56  Identities=21%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+.+.+.+.+++.|++++.+ ++++++.+.++. +.|.+.++        .++.+|.||.+.|..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g--------~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQH--------GEISGDLFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSS--------CEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCC--------CEEEcCEEEECCCcc
Confidence            455666777777789999999 899998644442 35555544        468999999999963

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=84.32  E-value=1.7  Score=39.93  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      +..+...+.+.+.+.|++++.+++|+++..++ +...+.+.+...+.   ...+.+|.||+++|+-.-.+.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d~~~G~---~~~i~A~~VV~AtG~~s~~l~  214 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARREN-GLWIVEAEDIDTGK---KYSWQARGLVNATGPWVKQFF  214 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEEEEEEEETTTCC---EEEEEESCEEECCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CEEEEEEEECCCCC---EEEEECCEEEECCChhHHHHH
Confidence            34567777888888999999999999998654 43456664311110   026789999999997544433

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=84.20  E-value=0.53  Score=40.55  Aligned_cols=27  Identities=26%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             eEEEEcCchhhHHHHHHhhc--Cceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNS--GCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~--~~~~V~~  311 (312)
                      .|+|||+|+.|+-+|.+|..  .+.+|+|
T Consensus        67 DV~IIGaGPAGlsAA~~la~~r~G~~V~v   95 (326)
T 3fpz_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCI   95 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence            49999999999999999863  3557765

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=83.44  E-value=2.1  Score=39.70  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+.+.+.+.+++.||+++.+ ++++++.++++. ..|.+.++        ..+.+|.||.+.|..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g--------~~i~ad~vV~A~G~~  221 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEG--------RTLEADLFIDCSGMR  221 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTS--------CEECCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCC--------cEEEeCEEEECCCCc
Confidence            566677888888899999999 899988654443 35555443        468999999999963

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=83.22  E-value=1.6  Score=39.56  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcC-CCee-EEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLA-DGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~-~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+.+.+.+.+++.|.++++++.|+++.... ++.+ .|.. ++        ..+.+|.||+++|+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g--------~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KL--------GTFKAPLVIADPTYF  299 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TT--------EEEECSCEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CC--------eEEECCEEEECCCcc
Confidence            4677778888888999999999999998652 3433 3333 33        467899999999975

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=83.22  E-value=1.5  Score=32.44  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .+.-.++|+|.|..|..++..|.+.+.+++++|...
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            345579999999999999999999999999998643

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=83.22  E-value=0.88  Score=43.51  Aligned_cols=30  Identities=27%  Similarity=0.378  Sum_probs=26.3

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+++|+|||+|.+|+.+|..|...+.+|+|
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~  135 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTL  135 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            456899999999999999999888888876

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=83.09  E-value=0.97  Score=40.71  Aligned_cols=56  Identities=9%  Similarity=-0.079  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG  114 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~  114 (312)
                      ..+.+.+.+.+++.|+++++++.|+++...+ +.+..+..++        ..+.+|.||+++|+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~v~~v~~~g--------~~~~ad~VV~a~~~~  289 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMEN-GKVVGVKSEG--------EVARCKQLICDPSYV  289 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEET-TEEEEEEETT--------EEEECSEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-CEEEEEEECC--------eEEECCEEEECCCCC
Confidence            4667777888888899999999999998643 4333223333        468899999999975

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=82.56  E-value=1.1  Score=42.71  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ++|++|+|+|..+..+|..+.+.|.+++++|++
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~   40 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSR   40 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            799999999999999999999999999999964

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=82.04  E-value=3.1  Score=39.08  Aligned_cols=61  Identities=11%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ..+...+.+.+++.||+|++++.++++..+.++. ..+.+.+...+.   ...+.++.||+++|.
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~---~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGE---VVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCC---EEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCe---EEEEEcCEEEECCCC
Confidence            5677778888888899999999999998642343 345544311110   135789999999984

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=81.55  E-value=1.1  Score=44.20  Aligned_cols=30  Identities=27%  Similarity=0.378  Sum_probs=26.4

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..++|+|||+|.+|+.+|..|...+.+|+|
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v  306 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTL  306 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            456899999999999999999888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	6e-24
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-21
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	7e-21
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	3e-20
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	4e-19
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-16
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-16
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	3e-16
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-16
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-14
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-14
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-13
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	3e-13
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	2e-10
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	3e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-10
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	4e-09
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	1e-08
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	2e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-08
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	2e-08
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	7e-08
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-07
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	1e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	9e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-06
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-06
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-06
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	4e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	5e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	7e-06
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	8e-06
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	0.003
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	9e-06
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-05
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	2e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	3e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-05
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	5e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	6e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	1e-04
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	2e-04
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	2e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	4e-04
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	6e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	7e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	8e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	8e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	8e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-04
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	0.001
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	0.001
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.002
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.002
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.002
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.002
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.003
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	0.003
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.003
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.003

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 96.3 bits (238), Expect = 6e-24
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 20/202 (9%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YDL+V+GGGSGG+AAA+ AA H  KV +++            LGGTCVNVGC+PKK+M  
Sbjct: 2   YDLIVIGGGSGGMAAARRAARHNAKVALVEK---------SRLGGTCVNVGCVPKKIMFN 52

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV------NWVTRVMLRDKK 217
           AA + + ++++  YG++     ++        + +Q            + V         
Sbjct: 53  AASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 112

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC----ISS 273
           +     L K    ++ +      E + L   NILIA G +P                + +
Sbjct: 113 LSENRILIKGTKDNNNKDNGPLNE-EILEGRNILIAVGNKPVGRSPDTENLKLEKLNVET 171

Query: 274 DDIFSLEKPPGKTLVVGAGYIG 295
           ++ + +     +T V     +G
Sbjct: 172 NNNYIVVDENQRTSVNNIYAVG 193

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 88.9 bits (219), Expect = 3e-21
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 12/192 (6%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI 156
           D     +YD + +GGG+ G   +    A G + +++D            LGG+C +  C+
Sbjct: 36  DENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR--------WPFLGGSCPHNACV 87

Query: 157 PKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK 216
           P  L    A      +      W  P++         + +  +      + +     +++
Sbjct: 88  PHHLFSDCAAELMLARTFSGQYW-FPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQ 146

Query: 217 KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDI 276
                          +          K   A+N+++A G  P   D+P        +  +
Sbjct: 147 LNLEYILNCPAKVIDN---HTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKIL 203

Query: 277 FSLEKPPGKTLV 288
                P G+ LV
Sbjct: 204 GLDLGPKGEVLV 215

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 86.8 bits (214), Expect = 7e-21
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 33/217 (15%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
            + D++++GGG GG  AA +AA  G K   ++            LGGTC+NVGCIP K +
Sbjct: 2   DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK--------RGALGGTCLNVGCIPSKAL 53

Query: 162 HQAA-LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
             ++ +  EA      +G ++ NV+    + A +       V ++      + +  KV Y
Sbjct: 54  LHSSHMYHEAKHSFANHGVKVSNVE---IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTY 110

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-----RPNYPD-------IPGAKE 268
           +   GKF+    +      GE   +  ++I+IATG       P           +   K 
Sbjct: 111 VKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKL 170

Query: 269 HCISSDDIFSLEKP---------PGKTLVVGAGYIGK 296
             I  ++ FS             PG  L   A   G 
Sbjct: 171 GRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGV 207

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (210), Expect = 3e-20
 Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 29/204 (14%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD + +GGGSGG+A+   AA +G+K  +++            LGGTCVNVGC+PKK+M  
Sbjct: 3   YDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKVMWH 53

Query: 164 AALLGEAIK-DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
           AA + EAI      YG++    K    NW  L  +   ++  ++     +L    VD   
Sbjct: 54  AAQIREAIHMYGPDYGFDTTINK---FNWETLIASRTAYIDRIHTSYENVLGKNNVDV-- 108

Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK- 281
                     V+A       +T+TA++ILIATGGRP++P  P      + +  + + EK 
Sbjct: 109 ---IKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKG 165

Query: 282 ----------PPGKTLVVGAGYIG 295
                            VG     
Sbjct: 166 YIVVDKYQNTNIEGIYAVGDNTGA 189

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.5 bits (202), Expect = 4e-19
 Identities = 100/169 (59%), Positives = 126/169 (74%), Gaps = 2/169 (1%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           YD+DL+++GGGSGGLAAAKEAA   +KV+VLD+V P+P GT WGLGGTCVNVGCIPKKLM
Sbjct: 2   YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLM 61

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
           HQAALLG+A+KD+  YGW++ +   V+H+W  + E+VQNH+ S+NW  RV LR+KKV Y 
Sbjct: 62  HQAALLGQALKDSRNYGWKLEDT--VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYE 119

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHC 270
           NA GKFI  H + AT   G++K  +AE  LIATG RP Y  I  +    
Sbjct: 120 NAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRT 168

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 75.7 bits (185), Expect = 1e-16
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
            +YD++VLGGG GG +AA  AA  G KV +++            LGG C+NVGCIP K +
Sbjct: 5   AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT--------LGGVCLNVGCIPSKAL 56

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
              A + + ++   A G + P  +    +   LR      V  +      M + +KVD +
Sbjct: 57  LHNAAVIDEVRHLAANGIKYPEPE---LDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVI 113

Query: 222 NALGKFID----------QHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI 271
              G+F+D            + E     GEKK +  +N +IA G R     +  A++  +
Sbjct: 114 QGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGV 173

Query: 272 SSDD 275
           +  D
Sbjct: 174 AVTD 177

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 2e-16
 Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 17/199 (8%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
             YD LV+GGGSGGLA+A+ AA  G +  V++            LGGTCVNVGC+PKK+M
Sbjct: 2   ASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKVM 52

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
              A+  E + D   YG+     K         R+A    V  +N + +  L    ++ +
Sbjct: 53  WNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAY---VSRLNAIYQNNLTKSHIEII 109

Query: 222 NALGKFIDQHSVEATMKNGEKKT-----LTAENILIATGGRPNYPDIPGAKEHCISSDDI 276
                F         +   +         T           PN  D+   K    + D  
Sbjct: 110 RGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKG 169

Query: 277 FSLEKPPGKTLVVGAGYIG 295
             +      T V G   +G
Sbjct: 170 HIIVDEFQNTNVKGIYAVG 188

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 74.6 bits (182), Expect = 3e-16
 Identities = 61/200 (30%), Positives = 83/200 (41%), Gaps = 15/200 (7%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
             YDL+V+G GSGGL A   AA+  +K V V+D            LGGTCVNVGC+PKKL
Sbjct: 2   RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           M   A   + I+++  +GW   + +SV+ NW  L  A    V  +N     M  D +   
Sbjct: 62  MVTGANYMDTIRESAGFGW-ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120

Query: 221 L-----NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
                              A   +   +TL  E IL+ATG  P +  I            
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIE--------VPR 172

Query: 276 IFSLEKPPGKTLVVGAGYIG 295
             +L+       V   G I 
Sbjct: 173 SQTLQLEKAGVEVAKNGAIK 192

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (181), Expect = 4e-16
 Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 34/219 (15%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
           T    +D++++GGG  G  AA +AA  G     ++            LGGTC+NVGCIP 
Sbjct: 1   TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE--------KRGKLGGTCLNVGCIPS 52

Query: 159 KLMHQAALLGEAIK-DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
           K +   + L   +  +A   G ++     +       ++A  + VK +     ++ +  K
Sbjct: 53  KALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN--FQKAKDDAVKQLTGGIELLFKKNK 110

Query: 218 VDYLNALGKFIDQHSVEATMKNGEKK------TLTAENILI--------ATGGRPNYPDI 263
           V Y    G F D+  +  T  +G +        L  +NI++          G RP    +
Sbjct: 111 VTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGL 170

Query: 264 PG-------AKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
                     K   +  DD F+  K P    VVG    G
Sbjct: 171 GAEKIGLEVDKRGRLVIDDQFN-SKFPH-IKVVGDVTFG 207

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
            + + LV+G G GG  AA  AA  G+KV +++            LGG C+NVGCIP K +
Sbjct: 2   IETETLVVGAGPGGYVAAIRAAQLGQKVTIVE---------KGNLGGVCLNVGCIPSKAL 52

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
             A+   E  K +   G +  N   V  ++A ++E   + VK +      +L+  KV+ +
Sbjct: 53  ISASHRYEQAKHSEEMGIKAEN---VTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIV 109

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260
                F+D ++V     +   +T T +N +IATG RP  
Sbjct: 110 KGEAYFVDANTVRVVNGDSA-QTYTFKNAIIATGSRPIE 147

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 68.1 bits (165), Expect = 4e-14
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
                LL++GGG GG  AA  A   G   ++++            LGGTC+N+GCIP K 
Sbjct: 3   TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG---------QALGGTCLNIGCIPSKA 53

Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
           +   A                 +V S + +           V  +      +L+   V  
Sbjct: 54  LIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKV 113

Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262
           ++   K +D   VE   +      +  E++L+ATG       
Sbjct: 114 VHGWAKVLDGKQVEVDGQR-----IQCEHLLLATGSSSVELP 150

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 7/194 (3%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
           +DL+V+G GSGGL AA  AA   +K V V+D  +         LGGTCVNVGC+PKKLM 
Sbjct: 4   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 63

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYL 221
             A   E ++++  +GW   +  +++  W NL       V ++N     M    + +++ 
Sbjct: 64  TGAQYMEHLRESAGFGW-EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFF 122

Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
              G    ++     +   E     +                         S     L+ 
Sbjct: 123 LGWGSLESKN----VVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQL 178

Query: 282 PPGKTLVVGAGYIG 295
                ++   G   
Sbjct: 179 QNAGVMIKNGGVQV 192

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.9 bits (159), Expect = 3e-13
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA 164
            +++LGGG  G  AA  AA    +   +  +         G+GG  V   C+P K    +
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIAS 56

Query: 165 ALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL 224
             L   ++ A   G+   +    + +   +   V+    + +      L    V  +   
Sbjct: 57  TGLRTELRRAPHLGF-HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR 115

Query: 225 GKFID------QHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
           G+ ID      +H ++AT  +G      A+ +L+ATG  P                +   
Sbjct: 116 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVG 175

Query: 279 LEKPPGKTLV 288
           ++   G  L 
Sbjct: 176 IQLGRGNYLT 185

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 62.4 bits (150), Expect = 5e-12
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           +D++V+G G GG  AA ++A  G K  +++        T    GGTC+NVGCIP K +  
Sbjct: 4   FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTAL--GGTCLNVGCIPSKALLD 61

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
           ++       ++            V  +   +       V+++      +++   V     
Sbjct: 62  SSYKFHEAHESFKLHGIST--GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG 119

Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
            GK +    VE T  +G  + L  EN+++A+G +P            +++D   +L++
Sbjct: 120 HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDE 177

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 25/49 (51%), Positives = 30/49 (61%)

Query: 264 PGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312
           PG KE+CISSDD+FSL   PGKTLVVGA Y+             +VT+ 
Sbjct: 1   PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM 49

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 22  GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
            LECAGFL G+G + TVM+RS+ LRGFDQ MA  I E M E G+ F+ + +P  + ++  
Sbjct: 32  ALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEA 91

Query: 82  GKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
           G              + T + +++ ++L  G
Sbjct: 92  GTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 56.4 bits (135), Expect = 6e-10
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 9/164 (5%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD--YVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
            + +++G G+ GL  A + A  G+ V V D    I      + G      N+   P   +
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL 64

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLR---DKKV 218
            Q     ++          I  V      +           +    +  ++         
Sbjct: 65  SQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA 124

Query: 219 DYLNALG----KFIDQHSVEATMKNGEKKTLTAENILIATGGRP 258
             L        + I        +          +N+++ATGG  
Sbjct: 125 KILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
            YD++V+GGG  GL AA  AA  G  V++LD      +      GG C     +P   + 
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
           +          +    +   ++ +   N     +   +            + D  +  L 
Sbjct: 62  KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

Query: 223 ALG-KFIDQHSVEATMKNGEK---------KTLTAENILIATGGR 257
            LG K      VE       +         + L   +++IA GG+
Sbjct: 122 DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGK 166

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           +P + G  E+ ISSD+ F++++   K  +VG+GYI 
Sbjct: 1   FPPVKGI-ENTISSDEFFNIKESK-KIGIVGSGYIA 34

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 22  GLECAGFLNGLGFNATVMIRSV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            +E    +  LG ++ +  R    LR FD+ +  ++  +M +  ++ +     + + K++
Sbjct: 34  AVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVS 93

Query: 81  DGKLKVQYKN 90
           D  L +   +
Sbjct: 94  DKNLSIHLSD 103

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 30/209 (14%), Positives = 69/209 (33%), Gaps = 21/209 (10%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
            D     + D++V+G GS GL+AA E +     +V +++      Q  +   GG     G
Sbjct: 26  TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE------QSVS--PGGGAWLGG 77

Query: 155 CIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR---- 210
            +   ++ +        +  VAY  +      V+H        +   +   N        
Sbjct: 78  QLFSAMIVRKPAHLFLDEIGVAYDEQ-DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVA 136

Query: 211 ---VMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK 267
              ++++  +V  +      + Q+    +  +     + A+ ++ + G     P      
Sbjct: 137 AEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPN--VMEAKIVVSSCGHD--GPFGATGV 192

Query: 268 EHCISSDDIFSLEKPPGKTLVVGAGYIGK 296
           +   S   I  +       +      I +
Sbjct: 193 KRLKSIGMIDHVPGMKALDMNTAEDAIVR 221

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312
           DIPG  E+ I SD  F+L   P +  VVGAGYIG       N       + 
Sbjct: 1   DIPGV-EYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLF 50

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 47.9 bits (113), Expect = 7e-08
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           IPG  EHCISS++ F L +PP + L VG G+I 
Sbjct: 1   IPGI-EHCISSNEAFYLPEPPRRVLTVGGGFIS 32

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 98  NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP 157
                ++D +V+G G  G+ AA + +  G+   +L  V P+   T    GG  V +G   
Sbjct: 2   KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTH 61

Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQ 199
           +            + D V     I +  ++++      EA+ 
Sbjct: 62  EDNWEW------HMYDTVKGSDYIGDQDAIEYMCKTGPEAIL 97

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 267 KEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            + CI+S++ F L++ P + L VG GYI 
Sbjct: 2   DDLCITSNEAFYLDEAPKRALCVGGGYIS 30

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
           +YD++VLG G      +   + +G+KV+ +D       + ++            + +   
Sbjct: 6   EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPP 65

Query: 162 H 162
            
Sbjct: 66  E 66

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 47.3 bits (111), Expect = 9e-07
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
            D++++G G  GLAAA  A   G KVI+L+   P P G T    G        P+  +  
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDAGAKVILLEKE-PIPGGNTKLAAGGMNAAETKPQAKLGI 82

Query: 164 AALLGEAIKDAVAYGWEIPN 183
                  I D +  G  I +
Sbjct: 83  EDKKQIMIDDTMKGGRNIND 102

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
             D++V+G G  G +AA  A   G KVI+++   P   G      G         +K   
Sbjct: 16  TVDVVVVGSGGAGFSAAISATDSGAKVILIEKE-PVIGGNAKLAAGGMNAAWTDQQKAKK 74

Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLRE 196
                    +D +  G  I +   V+   ++ ++
Sbjct: 75  ITDSPELMFEDTMKGGQNINDPALVKVLSSHSKD 108

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 98  NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
           +TH   +D++V+G GS G+AA  + A  G K +++D +  P   G+  G   
Sbjct: 1   STH---FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTR 49

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312
            IPGA    I+SD  F LE+ PG++++VGAGYI        ++     ++ 
Sbjct: 2   QIPGA-SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLM 51

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
            D LV+GGG  GL AA      G   IVL  +      +    GG   ++G
Sbjct: 6   CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLG 56

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
           T   + D+L++GGG  G  AA EAA      G KV +++      +      G + +N  
Sbjct: 17  TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA-AVERSGAVAQGLSAINTY 75

Query: 155 CIPKKLMHQAALLGEAIKDAVAYGWEIPN 183
                   +   L + ++        +  
Sbjct: 76  IDLTGRSERQNTLEDYVRYVTLDMMGLAR 104

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 99  THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           T   DYD++VLG G      +   +  G+KV+ +D
Sbjct: 1   TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHID 35

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312
           P+   +    + S    +L + P   +V+G GYIG        +    VTI 
Sbjct: 1   PNFKFS-NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTIL 51

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
             +LV+G GS G  A+  A   G  VI++D   P   G +    G    VG   +     
Sbjct: 20  TQVLVVGAGSAGFNASLAAKKAGANVILVDKA-PFSGGNSMISAGGMNAVGTKQQTAHGV 78

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW 207
              +   I+DA+  G +  ++K V        + VQ        
Sbjct: 79  EDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGAN 122

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 257 RPNYPDIPGAKEHCISSDDIFSLE------KPPGKTLVVGAGYIGKLETWDSNSGCGNVT 310
           R   P I G  E+ ++   IF  +      +  G+ +++G G+IG     +      +V 
Sbjct: 1   RAREPQIKGK-EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 59

Query: 311 IH 312
           + 
Sbjct: 60  LI 61

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 21  SGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
            GLE AG L   G++  ++ R     G D++++ +I + + E GV F      L   +  
Sbjct: 43  IGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANE-- 100

Query: 81  DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
           +G L             N+   +  + +   G
Sbjct: 101 EGVLT------------NSGFIEGKVKICAIG 120

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 258 PNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
              P IP      I S    +L++ PGK L++G G IG
Sbjct: 2   TKLPFIPED-PRIIDSSGALALKEVPGKLLIIGGGIIG 38

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           +P      ISS +  + +  P   +VVG GYIG
Sbjct: 2   LPLG-GPVISSTEALAPKALPQHLVVVGGGYIG 33

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC 150
           K  Y+ +V+GGG  G A A   A   +   + +        TT    G  
Sbjct: 2   KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM-GGRTTSAAAGML 50

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 101 KYDYDLLVLGGGSGGLAAAKEAA--AHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
            +  DL ++G G  GL AA  AA      K+ ++  V P    T    GG+     
Sbjct: 3   TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311
           P +   ++  +SS    +L + P K +V+GAGYIG             VT+
Sbjct: 3   PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTV 53

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 97  DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
           +   ++  D+L++G G+ GL+ A   A    +VIVL     +   T +  GG      
Sbjct: 1   NTLPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFD 57

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
            ++V+G G  G++AAK  +  G   +++L+    +       +GG           +   
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEA---TDH-----IGGRMHKTNFAGINVELG 53

Query: 164 AALL----GEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD 219
           A  +    G  +            +++ + ++  L + V      V     V  R +  D
Sbjct: 54  ANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELAD 113

Query: 220 YLNALGKFIDQ 230
            +  +G+ +  
Sbjct: 114 SVEEMGEKLSA 124

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
           P I   +E  +SS    SL++ P +  ++G G IG
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIG 35

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           YD +++G G  G   A E     +KV+V++
Sbjct: 2   YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD---------YVIPSPQGTTWGLGGTCVN 152
           D++V+GGG  G+AAAK     G  V+VL+         Y + + +     LGG+ V 
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 57

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAA 165
           ++     G G AAA   A  G KVI  D      Q      G     +    KK + Q A
Sbjct: 10  ILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFA 69

Query: 166 LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
              E +         + +   +     +   ++  +V+S+  + +  L    
Sbjct: 70  NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKML 121

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
            P  ++  + S      +  PGK  V+GAG IG
Sbjct: 2   APVDQDVIVDSTGALDFQNVPGKLGVIGAGVIG 34

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHG-RKVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
             ++++G G  G   A E    G   + VLD   +  P G+T    G        P K M
Sbjct: 2   PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTN--PSKTM 59

Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVM 212
              A        ++         +      A     + +  + + +     
Sbjct: 60  ASFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWG 110

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           YD++++G G  G   A+E    G KV + D
Sbjct: 5   YDVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAA 165
           ++ GG  G G  AA++A A G +V++ D +      T   LG                  
Sbjct: 9   IITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQR 68

Query: 166 LLGEAIKD------AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLR 214
           ++  A ++       V        +     +    R+ V+ ++  V    + ++ 
Sbjct: 69  VVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIP 123

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 96  QDNTHKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
           +D       D++++G GS GL+AA   A +    KV +++        ++   GG     
Sbjct: 43  KDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE--------SSVAPGGGSWLG 94

Query: 154 GCIPKKLMHQ 163
           G +   ++ +
Sbjct: 95  GQLFSAMVMR 104

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           ++ V+GGG  GLA A    + G   ++L+
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLE 30

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 87  QYKNVAEVRQDNTHKYD--YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            Y+   E+ ++          ++++G G  GL+AA   A  G +V VL+
Sbjct: 12  DYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 60

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
              LV+G G GG  AA      G    +++
Sbjct: 8   VPALVIGSGYGGAVAALRLTQAGIPTQIVE 37

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 9e-04
 Identities = 16/109 (14%), Positives = 30/109 (27%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
           YD+L++G G  G AAA  +A  G +  ++          T  +           +KL   
Sbjct: 2   YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGA 61

Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVM 212
             +  +     V        +          +    +          V 
Sbjct: 62  LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVA 110

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 253 ATG-GRPNYPDIPGAK---EHCISSDDIFSLEKPPGKTLVV---GAGYIG 295
             G     +  IPGA       ++ + +   +K  GK +V+      ++ 
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMA 53

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           +++G G  GLAAA++  + G  V +L+
Sbjct: 9   IIIGSGVSGLAAARQLQSFGMDVTLLE 35

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
            V+G G  GLAAA +   HG  V V +
Sbjct: 5   AVIGAGVSGLAAAYKLKIHGLNVTVFE 31

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
              +V+G G G   +A      G + ++L+
Sbjct: 3   VPAVVIGTGYGAAVSALRLGEAGVQTLMLE 32

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 16/165 (9%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
             + ++G G  GL   +     G   ++L+    +P      +    +  G +   L+ +
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ--TPDYVLGRIRAGVLEQGMV--DLLRE 58

Query: 164 AALLGEAIKDAVAYGWEI--PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD------ 215
           A +     +D + +         +  + +   L       V     VTR ++        
Sbjct: 59  AGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA 118

Query: 216 ---KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR 257
               +   +       ++  V    ++GE+  L  + I    G  
Sbjct: 119 TTVYQAAEVRLHDLQGERPYVT-FERDGERLRLDCDYIAGCDGFH 162

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQG--TTWGLGGTCVNVGCIPKKL 160
              LL+LG G  G  AA  AA    + +++  +    Q   TT                L
Sbjct: 5   HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLL 64

Query: 161 MHQ 163
           M +
Sbjct: 65  MER 67

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 27/197 (13%), Positives = 43/197 (21%), Gaps = 28/197 (14%)

Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIV----LDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
           Y +L++G G  G   A   A  G +V +    LD V+              +       K
Sbjct: 3   YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPK 62

Query: 160 LMHQAALLGEAIKDAVAYG----WEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
                A    A            ++      +          V+          +V+L  
Sbjct: 63  DERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRV--VGVRTWEGPPARGEKVVLAV 120

Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG--------GRPNYPDIPGAK 267
               +L A             +   E         L   G          P  P  PG  
Sbjct: 121 GS--FLGARLFLGGVVEEAGRL--SEASYPDLLEDLSRLGFRFVEREGEVPETPSTPG-- 174

Query: 268 EHCISSDDIFSLEKPPG 284
                     +      
Sbjct: 175 ----YRVRYLAFHPEEW 187

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
            YD +++G G GG+ AA   +  G+KV++L
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSEAGKKVLLL 31

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
           + D+LV+G G  GL A       GR V V++
Sbjct: 7   EVDVLVVGAGFSGLYALYRLRELGRSVHVIE 37

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 2/151 (1%)

Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
           +VLG G  GL++A   A  G  V +L   +P    ++             P   +     
Sbjct: 10  VVLGSGVIGLSSALILARKGYSVHILARDLP-EDVSSQTFASPWAGANWTPFMTLTDGPR 68

Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
             +  +       E+             R A        +W   +    + +   +    
Sbjct: 69  QAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPS-SECPP 127

Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGR 257
                + +    +  K        L   G  
Sbjct: 128 GAIGVTYDTLSVHAPKYCQYLARELQKLGAT 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.72
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.64
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.63
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.62
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.58
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.57
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.57
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.55
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.54
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.52
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.5
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.45
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.45
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.45
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.41
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.39
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.38
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.38
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.37
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.36
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.35
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.34
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.34
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.32
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.31
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.3
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.25
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.25
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.22
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.15
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.07
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.98
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.96
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.95
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.92
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.9
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.83
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.83
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.82
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.78
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.74
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.7
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.7
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.7
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.61
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.59
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.55
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.54
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.53
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.51
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.49
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.47
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.46
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.42
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.41
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.4
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.4
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.38
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.38
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.38
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.35
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.34
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.33
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.31
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.3
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.29
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.28
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.27
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.25
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.25
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.25
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.23
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.23
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.22
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.22
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.19
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.16
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.14
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.14
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.13
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.12
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.11
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.08
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.05
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.02
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.0
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.98
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.97
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.93
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.93
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.93
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.88
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.88
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.86
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.86
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.84
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.83
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.82
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.78
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.73
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.65
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.59
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.58
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.41
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.26
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.25
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.25
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.1
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.08
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.08
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.01
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.01
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.81
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.71
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.7
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.67
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.38
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.38
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.3
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.27
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.03
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	95.86
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	95.86
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	95.7
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.67
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.55
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.54
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.32
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	95.26
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	95.24
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.92
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.92
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.89
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.87
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.87
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.85
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	94.78
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.67
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	94.65
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	94.52
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.51
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.38
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.14
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.81
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.41
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.04
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.71
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.28
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.16
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.09
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	90.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	90.14
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.8
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	89.52
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.48
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.48
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	88.79
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.6
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.12
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.68
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.41
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	84.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	83.69
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.61
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.48
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	83.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.3
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.21
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.04
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.4

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=1.2e-18  Score=147.35  Aligned_cols=178  Identities=32%  Similarity=0.543  Sum_probs=130.0

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      ||++|||+||+|+.+|..+.+.|.++.++|+.         ..|+.|.+.+|.|++....+......+.....|++..  
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~---------~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~--   70 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS---------RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT--   70 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS---------STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCC--
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC---------CCCCeEEeeCCcchHHHHhhhhcccchhccccccccc--
Confidence            79999999999999999999999999999964         3688899999999999888888888887777777653  


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecC---------CCeEEEEcCeEEEcc
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKN---------GEKKTLTAENILIAT  254 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~---------G~~~~i~ad~vVlAt  254 (312)
                        ...++|..+..........+.......+...+|+++.+...+.+...+.+....         ++.+.+.+|++|+||
T Consensus        71 --~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIAT  148 (259)
T d1onfa1          71 --KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV  148 (259)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred             --hhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEec
Confidence              356889988888877777777777777888999999998777776666554321         123579999999999


Q ss_pred             CCCCC----CCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhh
Q psy11185        255 GGRPN----YPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIG  295 (312)
Q Consensus       255 G~~p~----~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa  295 (312)
                      |++|.    .|+..+++.. +++++.+..+...+ +.+|+|+|.+|
T Consensus       149 Gs~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~-~t~Vig~gaiG  193 (259)
T d1onfa1         149 GNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQ-RTSVNNIYAVG  193 (259)
T ss_dssp             CCCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTC-BCSSSSEEECS
T ss_pred             CCCCccccccccccccccceeeecccccccccCC-ceeEeeEEEEE
Confidence            99984    2333344433 56777777776655 55788888776

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.6e-18  Score=139.72  Aligned_cols=190  Identities=32%  Similarity=0.535  Sum_probs=136.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~  181 (312)
                      +||++|||+||+|+.+|..+.+.|.+++++|+..         .|+.|.+.+|.|++....+......+.. ...+++..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~---------~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~   72 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE---------LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT   72 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC---------cCCeEecccccccccchhhHHHHHHHHhhhhhcCccC
Confidence            6899999999999999999999999999999742         6788999999998877766554444322 22333322


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                      .   ...+++..+..+.....+.+.......+.+.+|++.............   ..++  ..+.++.+|+|||+.|..|
T Consensus        73 ~---~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~---~~~~--~~~~~~~~iiatG~~p~ip  144 (217)
T d1gesa1          73 T---INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTL---EVNG--ETITADHILIATGGRPSHP  144 (217)
T ss_dssp             E---EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEE---EETT--EEEEEEEEEECCCEEECCC
T ss_pred             C---cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeee---cCCC--ceeeeeeeeeecCccccCC
Confidence            1   356788888888877777776667777888999998777554444332   2345  7899999999999999999


Q ss_pred             CCCCCCcce-------eccccccCC----CCCCCeEEEEcCchhhHHHHHHhhcCceee
Q psy11185        262 DIPGAKEHC-------ISSDDIFSL----EKPPGKTLVVGAGYIGKLETWDSNSGCGNV  309 (312)
Q Consensus       262 ~~~g~~~~~-------~~~~~~~~~----~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V  309 (312)
                      ++|+.+...       .+.......    +..+++|.|||+|.+|+|.+..+...+..|
T Consensus       145 ~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v  203 (217)
T d1gesa1         145 REPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRL  203 (217)
T ss_dssp             EEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred             CCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHH
Confidence            988775421       111222111    234568999999999997666655555444

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.64  E-value=5.4e-16  Score=114.72  Aligned_cols=87  Identities=21%  Similarity=0.245  Sum_probs=76.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .||||+|.+|+++|++||++++ +++++.+|+++++++++.|+++||++++++++++++..+++ +.+.+.+++..    
T Consensus        32 ~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~----  106 (119)
T d3lada2          32 VIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ-VTVKFVDAEGE----  106 (119)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC-EEEEEESSSEE----
T ss_pred             hHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCE-EEEEEEECCCC----
Confidence            4999999999999999999999 59999999999999999999999999999999999876544 66777655322    


Q ss_pred             CccccccEEEEecC
Q psy11185         99 THKYDYDLLVLGGG  112 (312)
Q Consensus        99 ~~~~~~d~vivg~G  112 (312)
                       .++.+|.||++.|
T Consensus       107 -~~~~~D~vlvAvG  119 (119)
T d3lada2         107 -KSQAFDKLIVAVG  119 (119)
T ss_dssp             -EEEEESEEEECSC
T ss_pred             -EEEECCEEEEeeC
Confidence             4688999999987

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4.3e-16  Score=114.76  Aligned_cols=85  Identities=27%  Similarity=0.460  Sum_probs=77.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||++| +++|+.+|+++++++.+.|+++||++++++.++++++..++.+.+.+.++       
T Consensus        31 ~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g-------  103 (116)
T d1gesa2          31 YIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG-------  103 (116)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS-------
T ss_pred             hhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC-------
Confidence            4899999999999999999999 69999999999999999999999999999999999887666667777766       


Q ss_pred             CccccccEEEEecC
Q psy11185         99 THKYDYDLLVLGGG  112 (312)
Q Consensus        99 ~~~~~~d~vivg~G  112 (312)
                       .++++|.||+++|
T Consensus       104 -~~~~~D~vi~a~G  116 (116)
T d1gesa2         104 -RSETVDCLIWAIG  116 (116)
T ss_dssp             -CEEEESEEEECSC
T ss_pred             -CEEEcCEEEEecC
Confidence             5689999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.62  E-value=9.6e-16  Score=113.13  Aligned_cols=86  Identities=31%  Similarity=0.497  Sum_probs=76.6

Q ss_pred             hhhhhhhHhhhcc---CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~---g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      .+|+|+|.+|+++   |.+||++++ +++|+.+|+++++++++.|+++||++++++.+++++...++...+.+.++    
T Consensus        28 ~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g----  103 (117)
T d1feca2          28 YISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG----  103 (117)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS----
T ss_pred             hHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC----
Confidence            4799999886665   899999999 59999999999999999999999999999999999876676667778776    


Q ss_pred             cCCCccccccEEEEecCc
Q psy11185         96 QDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G~  113 (312)
                          .++++|.|||++|+
T Consensus       104 ----~~i~~D~Vi~a~GR  117 (117)
T d1feca2         104 ----AEADYDVVMLAIGR  117 (117)
T ss_dssp             ----CEEEESEEEECSCE
T ss_pred             ----CEEEcCEEEEecCC
Confidence                57899999999996

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.1e-15  Score=113.57  Aligned_cols=88  Identities=18%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-eeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~~~   97 (312)
                      .||+|+|.+|+++|++|||+++ +++|+.+|+++++++++.|+++||++++++++++++...++ .+.+.+.++.+++. 
T Consensus        33 ~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~-  111 (122)
T d1v59a2          33 IIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ-  111 (122)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEE-
T ss_pred             chHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCe-
Confidence            5999999999999999999999 69999999999999999999999999999999999876555 34666666544333 


Q ss_pred             CCccccccEEEEe
Q psy11185         98 NTHKYDYDLLVLG  110 (312)
Q Consensus        98 ~~~~~~~d~vivg  110 (312)
                        +++++|.|+++
T Consensus       112 --~~ie~D~vlvA  122 (122)
T d1v59a2         112 --ENLEAEVLLVA  122 (122)
T ss_dssp             --EEEEESEEEEC
T ss_pred             --EEEEeCEEEEC
Confidence              57899999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.3e-15  Score=122.55  Aligned_cols=161  Identities=62%  Similarity=1.106  Sum_probs=133.4

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      +++||++|||+||+|+.+|..+.+.|.+++++|.........-...|+.|...+|.|......+............++..
T Consensus         1 ~~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~   80 (235)
T d1h6va1           1 SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWK   80 (235)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence            36899999999999999999999999999999986654444445578889999999999888877777776666666655


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ...  ....++..+..........+.......++..+|+++.++..+.......+....++...+.++.+++++|+.|+.
T Consensus        81 ~~~--~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~  158 (235)
T d1h6va1          81 LED--TVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRY  158 (235)
T ss_dssp             CCS--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             ccc--ceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCcee
Confidence            443  456789998888877777777777778888999999999888888888888888877889999999999999987


Q ss_pred             CCC
Q psy11185        261 PDI  263 (312)
Q Consensus       261 p~~  263 (312)
                      +.+
T Consensus       159 ~~i  161 (235)
T d1h6va1         159 LGI  161 (235)
T ss_dssp             CSS
T ss_pred             EEE
Confidence            654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.9e-15  Score=110.40  Aligned_cols=90  Identities=40%  Similarity=0.733  Sum_probs=74.9

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcC---CCeeEEEEeecccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA---DGKLKVQYKNVAEVRQ   96 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~---~~~~~v~~~~~~~~~~   96 (312)
                      .||+|+|.+|+++|++|||++++++|+.+|+++++++.+.|+++||+|++++.+++++...   ++.+.+.+..+.+.+.
T Consensus        30 ~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (122)
T d1h6va2          30 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEET  109 (122)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEE
T ss_pred             ccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcE
Confidence            5999999999999999999999899999999999999999999999999999999987533   2345666655432211


Q ss_pred             CCCccccccEEEEecC
Q psy11185         97 DNTHKYDYDLLVLGGG  112 (312)
Q Consensus        97 ~~~~~~~~d~vivg~G  112 (312)
                         ...++|.|+++.|
T Consensus       110 ---~~~~~D~vl~AiG  122 (122)
T d1h6va2         110 ---IEDEFNTVLLAVG  122 (122)
T ss_dssp             ---EEEEESEEECCCC
T ss_pred             ---EEEECCEEEEEeC
Confidence               3567899999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.58  E-value=2.9e-15  Score=111.49  Aligned_cols=89  Identities=18%  Similarity=0.243  Sum_probs=77.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .||+|+|.+|+++|.+|||+++ +++|+.+|+++++++.+.|+++||++++++++++++...++ +.+.+.+++.    .
T Consensus        36 ~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g-~~v~~~~~~g----~  110 (125)
T d1ojta2          36 IIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG-VYVTFEGANA----P  110 (125)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE-EEEEEESSSC----C
T ss_pred             HHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCc-EEEEEEeCCC----C
Confidence            5999999999999999999999 58999999999999999999999999999999999876554 5666654422    1


Q ss_pred             CccccccEEEEecCc
Q psy11185         99 THKYDYDLLVLGGGS  113 (312)
Q Consensus        99 ~~~~~~d~vivg~G~  113 (312)
                      .+++++|.|++++|+
T Consensus       111 ~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         111 KEPQRYDAVLVAAGR  125 (125)
T ss_dssp             SSCEEESCEEECCCE
T ss_pred             eEEEEcCEEEEecCC
Confidence            157899999999996

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.57  E-value=4.4e-15  Score=109.25  Aligned_cols=83  Identities=17%  Similarity=0.374  Sum_probs=74.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||++| +++|+.+|+++++++.+.|+++||++++++.++++++..++.+.+.+.+|       
T Consensus        32 ~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G-------  104 (117)
T d1onfa2          32 YIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG-------  104 (117)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS-------
T ss_pred             hHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCC-------
Confidence            4899999999999999999999 69999999999999999999999999999999999987777677888776       


Q ss_pred             Cccc-cccEEEEe
Q psy11185         99 THKY-DYDLLVLG  110 (312)
Q Consensus        99 ~~~~-~~d~vivg  110 (312)
                       +.+ .+|.|||+
T Consensus       105 -~~~~~~D~Vi~A  116 (117)
T d1onfa2         105 -RIYEHFDHVIYC  116 (117)
T ss_dssp             -CEEEEESEEEEC
T ss_pred             -CEEEeCCEEEEe
Confidence             344 57999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=3e-15  Score=111.32  Aligned_cols=88  Identities=20%  Similarity=0.261  Sum_probs=73.7

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .||+|+|.+|+++|++|||++| +++|+.+|+++++++.+.|+++||++++++.+++++..+++ +.+.+...+.++   
T Consensus        35 ~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~---  110 (123)
T d1dxla2          35 YIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-VKLTVEPSAGGE---  110 (123)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS-EEEEEEESSSCC---
T ss_pred             hHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCe-EEEEEEECCCCe---
Confidence            5999999999999999999999 58999999999999999999999999999999999876555 455554322211   


Q ss_pred             CccccccEEEEec
Q psy11185         99 THKYDYDLLVLGG  111 (312)
Q Consensus        99 ~~~~~~d~vivg~  111 (312)
                      ...+++|.|++++
T Consensus       111 ~~~i~~D~vLvAA  123 (123)
T d1dxla2         111 QTIIEADVVLVSA  123 (123)
T ss_dssp             CEEEEESEEECCC
T ss_pred             EEEEEcCEEEEcC
Confidence            1468999999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.3e-15  Score=109.87  Aligned_cols=92  Identities=32%  Similarity=0.368  Sum_probs=75.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .||+|+|.+|+++|.+|||++| +++|+.+|+++++++.+.|+++||+++++++++++++..++ +.+.+.....++.+.
T Consensus        32 ~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g-~~v~~~~~~~g~~~~  110 (125)
T d3grsa2          32 YIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSG-LEVSMVTAVPGRLPV  110 (125)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTE-EEEEEEECCTTSCCE
T ss_pred             ccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-EEEEEEEccCCcCcC
Confidence            4999999999999999999999 59999999999999999999999999999999999876554 455544433333211


Q ss_pred             -CccccccEEEEecC
Q psy11185         99 -THKYDYDLLVLGGG  112 (312)
Q Consensus        99 -~~~~~~d~vivg~G  112 (312)
                       ....++|.|||+.|
T Consensus       111 ~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         111 MTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEEEESEEEECSC
T ss_pred             ccccccCCEEEEEeC
Confidence             13568999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.54  E-value=1.3e-14  Score=106.99  Aligned_cols=85  Identities=26%  Similarity=0.420  Sum_probs=72.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||++| +++|+.+|+++++++.+.|+++||++++++.+++++..+++ +.+.+..++.     
T Consensus        32 ~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~-~~v~~~~~g~-----  105 (117)
T d1ebda2          32 YIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG-VTVTYEANGE-----  105 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE-EEEEEEETTE-----
T ss_pred             ccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-EEEEEEeCCC-----
Confidence            5899999999999999999999 69999999999999999999999999999999999876554 5555543321     


Q ss_pred             CccccccEEEEe
Q psy11185         99 THKYDYDLLVLG  110 (312)
Q Consensus        99 ~~~~~~d~vivg  110 (312)
                      ..++++|.||+.
T Consensus       106 ~~~i~~D~Vlvs  117 (117)
T d1ebda2         106 TKTIDADYVLVT  117 (117)
T ss_dssp             EEEEEESEEEEC
T ss_pred             EEEEEeEEEEEC
Confidence            156899999973

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.52  E-value=2.1e-14  Score=105.66  Aligned_cols=83  Identities=29%  Similarity=0.486  Sum_probs=74.1

Q ss_pred             hhhhhhhHhhhccCC---eEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         20 DSGLECAGFLNGLGF---NATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~---~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      .+|+|+|.+|+++|.   +|||+++ +++|+.+|+++++++.+.|+++||++++++++++++...++.+.+.+.+|    
T Consensus        30 ~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G----  105 (117)
T d1aoga2          30 FISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESG----  105 (117)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS----
T ss_pred             HHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCC----
Confidence            479999988887764   7999999 69999999999999999999999999999999999876677677888776    


Q ss_pred             cCCCccccccEEEEe
Q psy11185         96 QDNTHKYDYDLLVLG  110 (312)
Q Consensus        96 ~~~~~~~~~d~vivg  110 (312)
                          +++++|.|||+
T Consensus       106 ----~~i~~D~Vi~A  116 (117)
T d1aoga2         106 ----KKMDFDLVMMA  116 (117)
T ss_dssp             ----CEEEESEEEEC
T ss_pred             ----cEEEeCEEEEe
Confidence                56899999997

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=1.7e-14  Score=105.82  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|.+|+++|++|||+++ +++|+.+|+++++++.+.|+++||++++++++++++.   +.......+++      
T Consensus        31 ~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~~~~~~~------  101 (115)
T d1lvla2          31 YIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN---GCLLANDGKGG------  101 (115)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TEEEEECSSSC------
T ss_pred             HHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcC---CeEEEEEcCCC------
Confidence            4899999999999999999999 6999999999999999999999999999999998852   31222222221      


Q ss_pred             CccccccEEEEecC
Q psy11185         99 THKYDYDLLVLGGG  112 (312)
Q Consensus        99 ~~~~~~d~vivg~G  112 (312)
                      ..++++|.||+++|
T Consensus       102 ~~~i~~D~vi~A~G  115 (115)
T d1lvla2         102 QLRLEADRVLVAVG  115 (115)
T ss_dssp             CCEECCSCEEECCC
T ss_pred             eEEEEcCEEEEecC
Confidence            14689999999988

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.45  E-value=5.2e-13  Score=109.26  Aligned_cols=149  Identities=26%  Similarity=0.365  Sum_probs=107.6

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      +++++|+||||+||+|+.+|..+.+.|.+++++|+..         .|+.|.+.+|.|++....+......+........
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~---------~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~   72 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA---------LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSP   72 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC---------CCCcccccccccchhhhhhHHHHhhhhhcccccc
Confidence            4689999999999999999999999999999999742         6788999999999887776665555444322211


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      ..........++.....+...................+++++.+.....+......   ++  ..+.+|.+|+|||+.|.
T Consensus        73 ~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~---~~--~~i~a~~viiAtG~~p~  147 (220)
T d1lvla1          73 LGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV---DG--QRIQCEHLLLATGSSSV  147 (220)
T ss_dssp             TCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE---TT--EEEECSEEEECCCEEEC
T ss_pred             ceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccc---cc--eeEeeceeeEcCCCCcc
Confidence            11111134566666666666655555555666777889999988877666554332   33  78999999999999887


Q ss_pred             CCC
Q psy11185        260 YPD  262 (312)
Q Consensus       260 ~p~  262 (312)
                      .||
T Consensus       148 ~lp  150 (220)
T d1lvla1         148 ELP  150 (220)
T ss_dssp             CBT
T ss_pred             ccc
Confidence            644

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.45  E-value=1.5e-13  Score=101.71  Aligned_cols=88  Identities=17%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE-eeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY-KNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~-~~~~~~~~~   97 (312)
                      .||+|+|.+|+++|.+||++++ +++++.+|+++++++.+.|+++||++++++++++++..+++...... ...+.    
T Consensus        32 ~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~----  107 (121)
T d1mo9a2          32 KTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG----  107 (121)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE----
T ss_pred             HHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCC----
Confidence            4899999999999999999999 58999999999999999999999999999999999987666443222 22111    


Q ss_pred             CCccccccEEEEecC
Q psy11185         98 NTHKYDYDLLVLGGG  112 (312)
Q Consensus        98 ~~~~~~~d~vivg~G  112 (312)
                       .+.+++|.||++.|
T Consensus       108 -~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         108 -EMRIETDFVFLGLG  121 (121)
T ss_dssp             -EEEEECSCEEECCC
T ss_pred             -CEEEEcCEEEEEEC
Confidence             15789999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.45  E-value=1.3e-13  Score=101.81  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             hhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         21 SGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      +|+|+|..|+++|++|||+++ +++|+ .+++++++++.+.|+++||++++++.++++..   +  .+.+.++       
T Consensus        41 iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~---~--~v~l~dg-------  108 (121)
T d1d7ya2          41 IGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVD---G--VVLLDDG-------  108 (121)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEET---T--EEEETTS-------
T ss_pred             hHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C--EEEECCC-------
Confidence            789999999999999999999 58886 68999999999999999999999999988753   3  5777776       


Q ss_pred             CccccccEEEEecC
Q psy11185         99 THKYDYDLLVLGGG  112 (312)
Q Consensus        99 ~~~~~~d~vivg~G  112 (312)
                       .++++|.||++.|
T Consensus       109 -~~i~~D~vi~a~G  121 (121)
T d1d7ya2         109 -TRIAADMVVVGIG  121 (121)
T ss_dssp             -CEEECSEEEECSC
T ss_pred             -CEEECCEEEEeeC
Confidence             5789999999987

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=7.2e-13  Score=109.44  Aligned_cols=149  Identities=26%  Similarity=0.391  Sum_probs=108.9

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC---cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR---KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~---~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .+++|||+||+|+.+|..+.+.+.   ++.++|+..         .|+.|.+++|.|++...........+.....|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~---------~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~   72 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG---------IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFH   72 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC---------TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC---------CCceeecccccccEEEEeecchhhhhhhhhhcCCc
Confidence            378999999999999988776554   578889742         67889999999998776665555555555555543


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC------CeEEEEecCCCeEEEEcCeEEEcc
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ------HSVEATMKNGEKKTLTAENILIAT  254 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~------~~~~v~~~~G~~~~i~ad~vVlAt  254 (312)
                      ... ....+||..+..............+...+...+|+++.+.....+.      ..+.+...+|+..++.+|.+|+||
T Consensus        73 i~~-~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt  151 (233)
T d1xdia1          73 IDF-DDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT  151 (233)
T ss_dssp             -------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred             ccc-cCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence            321 2356788887777666555555566777888999999887665543      456777788888899999999999


Q ss_pred             CCCCCCCC
Q psy11185        255 GGRPNYPD  262 (312)
Q Consensus       255 G~~p~~p~  262 (312)
                      |..|+.++
T Consensus       152 G~~p~~~~  159 (233)
T d1xdia1         152 GASPRILP  159 (233)
T ss_dssp             CEEECCCG
T ss_pred             Cccccccc
Confidence            99887653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.39  E-value=1.6e-12  Score=106.14  Aligned_cols=145  Identities=29%  Similarity=0.524  Sum_probs=102.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHH-HHHHHHHcCCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGE-AIKDAVAYGWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~  181 (312)
                      +||++|||+||+|+.+|..+.+.+.+++++|+...        +|+.|...+|.+............ .......+++..
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~--------~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~   74 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA--------LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKV   74 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS--------SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC--------CCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeec
Confidence            69999999999999999999999999999997542        577788888887765544333222 222223334332


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP  258 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p  258 (312)
                      .   ...+.+.....+.......+.......+...+++++.......++.........+....+.+|.||+|||+.|
T Consensus        75 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~  148 (221)
T d1dxla1          75 S---NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV  148 (221)
T ss_dssp             S---CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE
T ss_pred             c---cceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc
Confidence            2   2345555555555555555555566677788999998887777777766665555558899999999999755

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=6.2e-13  Score=99.86  Aligned_cols=85  Identities=19%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-ee-EEEEeeccccc
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KL-KVQYKNVAEVR   95 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~-~v~~~~~~~~~   95 (312)
                      .+|+|+|..|+++|++|||+++ +++|+ .+++++++++.+.++++||++++++.+++++...++ .+ .+.+.+|    
T Consensus        45 ~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G----  120 (133)
T d1q1ra2          45 YIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG----  120 (133)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS----
T ss_pred             hHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC----
Confidence            4899999999999999999999 68886 579999999999999999999999999999875433 22 4666665    


Q ss_pred             cCCCccccccEEEEecC
Q psy11185         96 QDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        96 ~~~~~~~~~d~vivg~G  112 (312)
                          ..+++|.||++.|
T Consensus       121 ----~~i~~D~vi~a~G  133 (133)
T d1q1ra2         121 ----TRLPADLVIAGIG  133 (133)
T ss_dssp             ----CEEECSEEEECCC
T ss_pred             ----CEEECCEEEEeeC
Confidence                5789999999988

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.38  E-value=9.6e-13  Score=97.43  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=69.8

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      .+|+|+|..|+++|++||++++ +++|+ .+|+++++++.+.|+++||++++++.+++++.+  +.+...+.++      
T Consensus        40 ~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~dg------  111 (123)
T d1nhpa2          40 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDK------  111 (123)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESS------
T ss_pred             HHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEEEEEeCC------
Confidence            3789999999999999999999 58886 579999999999999999999999999999753  3344446665      


Q ss_pred             CCccccccEEEEe
Q psy11185         98 NTHKYDYDLLVLG  110 (312)
Q Consensus        98 ~~~~~~~d~vivg  110 (312)
                        .++++|.||++
T Consensus       112 --~~i~~D~vi~a  122 (123)
T d1nhpa2         112 --NAYDADLVVVA  122 (123)
T ss_dssp             --CEEECSEEEEC
T ss_pred             --CEEECCEEEEE
Confidence              57899999987

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.37  E-value=5.7e-12  Score=104.29  Aligned_cols=159  Identities=37%  Similarity=0.602  Sum_probs=121.5

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .+||+||||+||+|+.+|..+.+.+. .+.++|............+|+.|.+.+|.|++....+......+.....+++.
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~   81 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE   81 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccccccccccc
Confidence            47999999999999999999988775 58888887666666777889999999999999988888777777777777765


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEeeCCeEEEEe----cCCCeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFIDQHSVEATM----KNGEKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~----~~G~~~~i~ad~vVlAtG  255 (312)
                      ... ....+||..+..+...............+.. .+++++.+..............    ..+..+.+.+|.++++||
T Consensus        82 ~~~-~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G  160 (240)
T d1feca1          82 LDR-ESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG  160 (240)
T ss_dssp             CCG-GGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             ccc-cccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecC
Confidence            432 2456899988887776666555555555544 4689998887777766655543    244457899999999999


Q ss_pred             CCCCCC
Q psy11185        256 GRPNYP  261 (312)
Q Consensus       256 ~~p~~p  261 (312)
                      +.|...
T Consensus       161 ~~p~~~  166 (240)
T d1feca1         161 SWPQHL  166 (240)
T ss_dssp             EEECCC
T ss_pred             CceeEc
Confidence            887654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.36  E-value=1.3e-12  Score=102.00  Aligned_cols=140  Identities=17%  Similarity=0.184  Sum_probs=91.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCccch-------------HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEE
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRGFD-------------QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKV   86 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~-------------~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v   86 (312)
                      .+|+|+|..|++ +.+|||+++........             ..+..+..+.+++.++++++++.++++...  .  .+
T Consensus        10 ~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~--~--~~   84 (167)
T d1xhca1          10 PGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRG--R--KV   84 (167)
T ss_dssp             HHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETT--T--TE
T ss_pred             HHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccc--c--cc
Confidence            589999999986 67999999843221111             112223345677789999999999988532  2  24


Q ss_pred             EEeeccccccCCCccccccEEEEecCcchHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHH
Q psy11185         87 QYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAA  165 (312)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~  165 (312)
                      ...++        .++++|.+|+++|.....+.... .+.+ +.+.++.+++++.|+||++||++...... ....+.+.
T Consensus        85 ~~~~~--------~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~-~~~~~~a~  154 (167)
T d1xhca1          85 VITEK--------GEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII-AGTAKAAM  154 (167)
T ss_dssp             EEESS--------CEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC-CCSHHHHH
T ss_pred             ccccc--------cccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE-EChHHHHH
Confidence            44444        46899999999996444332221 2222 34778889999999999999976543322 12344566


Q ss_pred             HHHHHHHHH
Q psy11185        166 LLGEAIKDA  174 (312)
Q Consensus       166 ~~~~~~~~~  174 (312)
                      .+++.+.++
T Consensus       155 ~~a~~~a~~  163 (167)
T d1xhca1         155 EQARVLADI  163 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.35  E-value=7.8e-13  Score=97.84  Aligned_cols=79  Identities=25%  Similarity=0.385  Sum_probs=67.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      .+|+|+|..|+++|++|||++++ ++++ +|+++++++.+.|+++||++++++++++++.  ++   + +.++       
T Consensus        42 ~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~---v-~~~~-------  107 (122)
T d1xhca2          42 FIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--EG---V-LTNS-------  107 (122)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--SE---E-EETT-------
T ss_pred             HHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE---E-EeCC-------
Confidence            48999999999999999999995 6665 8999999999999999999999999998853  22   2 4444       


Q ss_pred             CccccccEEEEecCc
Q psy11185         99 THKYDYDLLVLGGGS  113 (312)
Q Consensus        99 ~~~~~~d~vivg~G~  113 (312)
                       ..+++|.|||++|.
T Consensus       108 -~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         108 -GFIEGKVKICAIGI  121 (122)
T ss_dssp             -EEEECSCEEEECCE
T ss_pred             -CEEECCEEEEEEEe
Confidence             56899999999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=98.57  Aligned_cols=84  Identities=23%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             hhhhhhhHhhh----ccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc
Q psy11185         20 DSGLECAGFLN----GLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE   93 (312)
Q Consensus        20 ~ig~E~A~~l~----~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~   93 (312)
                      .+|+|+|..|+    .+|.+||++++ +++|+ .+++++++++.+.|+++||++++++.+++++.+ ++.+.+.+.+|  
T Consensus        47 ~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~~v~l~~G--  123 (137)
T d1m6ia2          47 FLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKLLIKLKDG--  123 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEEEEEETTS--
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEEEEEECCC--
Confidence            38999999885    47999999999 58886 589999999999999999999999999999875 44567888776  


Q ss_pred             cccCCCccccccEEEEecC
Q psy11185         94 VRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        94 ~~~~~~~~~~~d~vivg~G  112 (312)
                            +.+++|.|||++|
T Consensus       124 ------~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         124 ------RKVETDHIVAAVG  136 (137)
T ss_dssp             ------CEEEESEEEECCC
T ss_pred             ------CEEECCEEEEeec
Confidence                  5789999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.9e-12  Score=102.73  Aligned_cols=145  Identities=38%  Similarity=0.652  Sum_probs=107.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP  182 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  182 (312)
                      +||+||||+||+|+.+|..+.+.+.+++++|+..         .|+.|...+|.|++.................+.....
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~---------~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~   73 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK---------LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC   73 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC---------CCCccccchhhhhhhhhhHHHHHHHHhhhhhcccccc
Confidence            6899999999999999999999999999999743         6777889999998877766655555444443443322


Q ss_pred             CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185        183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~  262 (312)
                         ...+++.............+.......++..+|+++.+..........++....   ..+.++.+++|||+.|..|.
T Consensus        74 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~---~~~~~~~~~iatG~~p~vp~  147 (221)
T d3grsa1          74 ---EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPH  147 (221)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETT---EEEECSCEEECCCEEECCCC
T ss_pred             ---ccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeec---cccccceeEEecCccccCCC
Confidence               345677777766666655555556667888999999988766655555544433   58889999999999887764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.32  E-value=2.5e-11  Score=101.71  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=103.9

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...+||+||||+|++|+.+|..+.+.+.+++++|+...        .|+.|.+.+|.|++....+.............. 
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~--------lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~-  109 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF--------LGGSCPHNACVPHHLFSDCAAELMLARTFSGQY-  109 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST-
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc--------cccccccccccchHHHHhhHHhHHHHHHhhhhc-
Confidence            45689999999999999999999999999999997542        577899999999887776655544433321111 


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCC-ceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKK-VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g-V~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      .++.......++................ .........+ ..++.+.....+...+.+   +|  +++.+|.||+|||..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~---~g--~~i~ad~viiAtG~~  184 (261)
T d1mo9a1         110 WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA---AG--KVFKAKNLILAVGAG  184 (261)
T ss_dssp             TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE---TT--EEEEBSCEEECCCEE
T ss_pred             cccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc---cc--ceEeeeeeeeccCCC
Confidence            1222223445666665555444333222 1222233334 445666666666665543   55  789999999999999


Q ss_pred             CCCCCCCCCC
Q psy11185        258 PNYPDIPGAK  267 (312)
Q Consensus       258 p~~p~~~g~~  267 (312)
                      |+.|++++.+
T Consensus       185 P~~~~i~~~~  194 (261)
T d1mo9a1         185 PGTLDVPEQP  194 (261)
T ss_dssp             CCCCCSTCEE
T ss_pred             CCcCcccccc
Confidence            9999998864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=1.7e-11  Score=99.93  Aligned_cols=145  Identities=33%  Similarity=0.501  Sum_probs=109.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI  181 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  181 (312)
                      +++|+||||+||+|+.+|..+.+.|.+++++|+..         .|+.|...+|.|...................+....
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~---------~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN---------LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA   72 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---------TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC---------CCcceeccccccccccccccchhhhhhhhhhhcccc
Confidence            58999999999999999999999999999999743         577788888888777666655555544444343322


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN  259 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~  259 (312)
                      .   ...+++..+..+.......+...........+|+++.++..+.+.....+...++ ...+.++.+|+|+|..|.
T Consensus        73 ~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~-~~~~~~~~iiIa~g~~p~  146 (223)
T d1ebda1          73 E---NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPI  146 (223)
T ss_dssp             C---SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEEC
T ss_pred             h---hheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceecccc-ceEEecccEEEEcCCCcc
Confidence            2   3456777777776666666666677778889999999988887777777665443 378999999999985543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.30  E-value=1.4e-11  Score=100.74  Aligned_cols=155  Identities=25%  Similarity=0.455  Sum_probs=111.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHc-CCcc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAY-GWEI  181 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~  181 (312)
                      +||++|||+||+|+.+|..+.+.+.+++++|+....  ++....|..|...++.+...................+ +...
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~--~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~   80 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK--EGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIST   80 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT--TSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC--Cccccccccccccccchhhhhhhhhhhhhhhhhhhhhccccc
Confidence            699999999999999999999999999999975432  2334456667777777766544433333322221111 2111


Q ss_pred             CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185        182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p  261 (312)
                         ....+++.....+.......+...+...+...+|+++.+................++...+.++.+|+|||+.|..+
T Consensus        81 ---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~  157 (229)
T d3lada1          81 ---GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (229)
T ss_dssp             ---SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             ---CcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccc
Confidence               24567888888888777777777777788888999999887777766677766666668899999999999887664


Q ss_pred             C
Q psy11185        262 D  262 (312)
Q Consensus       262 ~  262 (312)
                      +
T Consensus       158 ~  158 (229)
T d3lada1         158 P  158 (229)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.25  E-value=1.8e-13  Score=113.16  Aligned_cols=158  Identities=19%  Similarity=0.243  Sum_probs=92.6

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ....+++|||+|++|+.+|..+.+.|.+++++|....        +|+.+.....                         
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~--------~GG~~~~~~~-------------------------   93 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK--------IGGHLNQVAA-------------------------   93 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS--------TTTTHHHHTT-------------------------
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc--------cCCccccccc-------------------------
Confidence            4567899999999999999999999999999997553        3332111000                         


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .    +...++.....+.....        ..+...++.....    ....  .+...+.  .++.+|+||+|||+.+..
T Consensus        94 ~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~--~~~~~~~--~~~~~d~vviAtG~~~~~  153 (233)
T d1djqa3          94 L----PGLGEWSYHRDYRETQI--------TKLLKKNKESQLA----LGQK--PMTADDV--LQYGADKVIIATGASECT  153 (233)
T ss_dssp             S----TTCGGGGHHHHHHHHHH--------HHHHTTCTTCEEE----CSCC--CCCHHHH--HTSCCSEEEECCCEECCH
T ss_pred             c----ceeecccccchhHHHHH--------HHHhhcceeeeee----cccc--cccchhh--hhhccceeeeccCCCccc
Confidence            0    01112222222211111        1112222221100    0000  1111222  457799999999988777


Q ss_pred             CCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.+++....    ..............++++|+|+|++|+++|.+|...+++|+|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  208 (233)
T d1djqa3         154 LWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAI  208 (233)
T ss_dssp             HHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCC
T ss_pred             ccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEE
Confidence            654433221    122233333345677899999999999999999999999886

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=4.5e-12  Score=101.83  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=94.5

Q ss_pred             hhhhhhhHhhhccC--CeEEEEEccCCCccchH--------------HHHHHHHHHHhccceEEEeeceeeEEEEcCCCe
Q psy11185         20 DSGLECAGFLNGLG--FNATVMIRSVPLRGFDQ--------------QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK   83 (312)
Q Consensus        20 ~ig~E~A~~l~~~g--~~vtl~~~~~~l~~~~~--------------~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~   83 (312)
                      .+|+|+|..|++++  .+||+++|...++..+.              .+..+..+.|+++||+++++++|.+++.+. + 
T Consensus        10 ~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~-~-   87 (198)
T d1nhpa1          10 HGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKE-H-   87 (198)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEEEETTT-T-
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceeeEeecc-c-
Confidence            68999999999985  58999998533322221              122223467888999999999999997543 3 


Q ss_pred             eEEEEeeccccccCCCccccccEEEEecCcc-----hHHH----HHHHHHC-CCcEEEEeccCCCCCCcccccCCccccc
Q psy11185         84 LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG-----GLAA----AKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGTCVNV  153 (312)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~-----gl~~----a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~~~~~  153 (312)
                       .+.+.+..++..   ..+++|.+|++.|..     |...    ....... ....+++|..++|+.|+|||+||++...
T Consensus        88 -~v~~~~~~~g~~---~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~  163 (198)
T d1nhpa1          88 -QVTVKDLVSGEE---RVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIK  163 (198)
T ss_dssp             -EEEEEETTTCCE---EEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEE
T ss_pred             -cceeeecccccc---cccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecceeecc
Confidence             355443322111   457899999999942     2111    1111111 2235788899999999999999976442


Q ss_pred             ccc-----hhhHHHHHHHHHHHHHHHH
Q psy11185        154 GCI-----PKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       154 ~~~-----~~~~~~~a~~~~~~~~~~~  175 (312)
                      ...     .......+..+++.+..+.
T Consensus       164 ~~~~~~~~~~~~a~~A~~~g~~aa~ni  190 (198)
T d1nhpa1         164 YNPADTEVNIALATNARKQGRFAVKNL  190 (198)
T ss_dssp             EGGGTEEECCCCHHHHHHHHHHHHHTS
T ss_pred             cccCCCcccccHHHHHHHHHHHHHHhh
Confidence            211     1123455666777766643

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.22  E-value=2.1e-12  Score=102.45  Aligned_cols=144  Identities=18%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccch-HHHHHHH----------HHHHhccceEEEeeceeeEEEEcCCCeeEEE
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFD-QQMAKLI----------CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ   87 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~-~~~~~~~----------~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~   87 (312)
                      .+|+|+|..|+++|.+++|+++ ++.++.++ +.+...+          ...+...+|++++++.++++....   ..+.
T Consensus        13 ~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~---~~~~   89 (183)
T d1d7ya1          13 LASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQA---HTVA   89 (183)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETTT---TEEE
T ss_pred             HHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccccc---ceeE
Confidence            5899999999999999998887 45443322 1111111          122345689999999999886432   2566


Q ss_pred             EeeccccccCCCccccccEEEEecCcc------hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc----
Q psy11185         88 YKNVAEVRQDNTHKYDYDLLVLGGGSG------GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI----  156 (312)
Q Consensus        88 ~~~~~~~~~~~~~~~~~d~vivg~G~~------gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~----  156 (312)
                      +.++        +++++|.+|++.|..      ...+.... ...+ +.+.+|.+++|+.|+|||+||++......    
T Consensus        90 ~~~g--------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g~~  160 (183)
T d1d7ya1          90 LSDG--------RTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRF  160 (183)
T ss_dssp             ETTS--------CEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTTCSE
T ss_pred             ecCC--------cEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeCCce
Confidence            6665        578999999999942      22222211 1122 34778888999999999999976543211    


Q ss_pred             -hhhHHHHHHHHHHHHHHHH
Q psy11185        157 -PKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       157 -~~~~~~~a~~~~~~~~~~~  175 (312)
                       .......+..++..+.++.
T Consensus       161 ~~~~~~~~A~~qg~~aa~ni  180 (183)
T d1d7ya1         161 ERIETWSNAQNQGIAVARHL  180 (183)
T ss_dssp             EECCCHHHHHHHHHHHHHHH
T ss_pred             echhHHHHHHHHHHHHHHHH
Confidence             1123455666677666653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.15  E-value=6.6e-10  Score=91.08  Aligned_cols=159  Identities=33%  Similarity=0.586  Sum_probs=116.6

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..||++|||+||+|+.+|..+.+.+. .++++|.......+....+|+.|.+.+|.|++....+......+.....++..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~   81 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWE   81 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCc
Confidence            36999999999999999999998876 57888876555555556678889999999998887777766666666666654


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHH-hcCCceEEeceeEEeeCCeEEEEec----CCCeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYLNALGKFIDQHSVEATMK----NGEKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~~~~~~~~~~~~~~~~v~~~----~G~~~~i~ad~vVlAtG  255 (312)
                      +.. .....+|..+..................+ ...+|+++.+...............    ......++++.+++++|
T Consensus        82 ~~~-~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~  160 (238)
T d1aoga1          82 FDR-TTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASG  160 (238)
T ss_dssp             CCG-GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCC
T ss_pred             ccC-ccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecc
Confidence            322 23556888888777666555544444444 4678999998877666666555542    23346789999999999


Q ss_pred             CCCCCC
Q psy11185        256 GRPNYP  261 (312)
Q Consensus       256 ~~p~~p  261 (312)
                      ..|..+
T Consensus       161 ~~~~~~  166 (238)
T d1aoga1         161 SWPHMP  166 (238)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            877664

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=6.3e-12  Score=98.75  Aligned_cols=123  Identities=20%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ....+++|||+||+|+++|..+.+.|.+++++|+...        .|+....                         ...
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~--------~GG~l~~-------------------------~~~   87 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE--------IGGQFNI-------------------------AKQ   87 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS--------SCTTHHH-------------------------HTT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc--------cCceEEE-------------------------EEe
Confidence            3457899999999999999999999999999998653        3331100                         000


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .    +.+.++..+..+           +..+++..+|++..++..          +.+   ....+|.||+|||+.|+.
T Consensus        88 ~----p~~~~~~~~~~~-----------~~~~~~~~gV~i~l~~~V----------t~~---~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3          88 I----PGKEEFYETLRY-----------YRRMIEVTGVTLKLNHTV----------TAD---QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             S----TTCTTHHHHHHH-----------HHHHHHHHTCEEEESCCC----------CSS---SSCCSSEEEECCCEECCT
T ss_pred             C----cccchHHHHHHH-----------HHHhhhcCCeEEEeCCEE----------ccc---ccccceeEEEeecCCCcc
Confidence            0    122233333322           223445668888655421          112   245689999999998887


Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHH
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLE  298 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~  298 (312)
                      +++|+.+              .+++++|||+|.++++.
T Consensus       140 ~~~pg~~--------------~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         140 LAQPLID--------------SGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             THHHHHT--------------TTCCEEECGGGTCCSSC
T ss_pred             cccchhc--------------cCCEEEEECCcHhhhhc
Confidence            7766653              47889999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.1e-09  Score=89.51  Aligned_cols=145  Identities=32%  Similarity=0.536  Sum_probs=103.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGW  179 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~  179 (312)
                      ..+||++|||+||+|+.+|..+.+.+.+++++|+...        .|+.|...+|.|.+...........+.. ...++.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~--------~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi   74 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK--------LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGI   74 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTE
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC--------cceEeEEeeccccccccccchhHHHhhhhHhhcCe
Confidence            3479999999999999999999999999999997532        5777888899888766655554444432 334454


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCC------CeEEEEcCeEEEc
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNG------EKKTLTAENILIA  253 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G------~~~~i~ad~vVlA  253 (312)
                      ....  ....++.............+...........+++++.++..+.++....+....+      ....+.++.++++
T Consensus        75 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~  152 (233)
T d1v59a1          75 DVNG--DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVA  152 (233)
T ss_dssp             EECS--CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred             eEee--ceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEecccccceeeeeeeccCCeEEEe
Confidence            3322  3455666666555555555555566667788999999998888888777766443      1245778888886


Q ss_pred             cC
Q psy11185        254 TG  255 (312)
Q Consensus       254 tG  255 (312)
                      ++
T Consensus       153 ~~  154 (233)
T d1v59a1         153 TG  154 (233)
T ss_dssp             CC
T ss_pred             cc
Confidence            66

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.98  E-value=6.9e-10  Score=91.80  Aligned_cols=36  Identities=44%  Similarity=0.702  Sum_probs=32.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ++||++|||+|++|+.+|..+.+.|.+++++|+...
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            378999999999999999999999999999998653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.96  E-value=5.7e-10  Score=85.74  Aligned_cols=59  Identities=12%  Similarity=-0.081  Sum_probs=55.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEE
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTK   78 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~   78 (312)
                      .||+|+|.+|+++|++|||+++ +++++.++++.+..+.+.|++.||++++++.+.+++.
T Consensus        51 ~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  110 (156)
T d1djqa2          51 FMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEP  110 (156)
T ss_dssp             SHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEET
T ss_pred             hHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecC
Confidence            4999999999999999999999 5889999999999999999999999999999999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.95  E-value=3.7e-10  Score=89.01  Aligned_cols=145  Identities=15%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCC-Cccc--------------hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVP-LRGF--------------DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK   83 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~-l~~~--------------~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~   83 (312)
                      .+|+|+|..|+++|.+||++++ ++. .+..              ...........+...++.+..+..+..+... .  
T Consensus        13 ~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--   89 (185)
T d1q1ra1          13 LAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRD-R--   89 (185)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEEEETT-T--
T ss_pred             HHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeeeeccc-c--
Confidence            5899999999999999999887 332 2111              1111112234455567778777777766532 2  


Q ss_pred             eEEEEeeccccccCCCccccccEEEEecCc----chHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccc---
Q psy11185         84 LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI---  156 (312)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~---  156 (312)
                      ..+...++        .++++|.+|+++|.    ..+.+.........+.+.+|.+++|+.|+||++||++......   
T Consensus        90 ~~v~~~~~--------~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~~~~  161 (185)
T d1q1ra1          90 QQVILSDG--------RALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDR  161 (185)
T ss_dssp             TEEEETTS--------CEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEETTTTE
T ss_pred             cEEEeece--------eEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccccCCc
Confidence            24554443        67899999999995    2344433221111234668899999999999999976654321   


Q ss_pred             --hhhHHHHHHHHHHHHHHHH
Q psy11185        157 --PKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       157 --~~~~~~~a~~~~~~~~~~~  175 (312)
                        .....+.+..+++.+.++.
T Consensus       162 ~~~~~~a~~A~~~g~~aa~~i  182 (185)
T d1q1ra1         162 WVRIESVPNALEQARKIAAIL  182 (185)
T ss_dssp             EEECCSHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHc
Confidence              1235667777787776654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.7e-10  Score=93.54  Aligned_cols=145  Identities=10%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             hhhhhhhhHhhhccCC--eEEEEEccCCCccc-----------------------------------hHH--HHHHHHHH
Q psy11185         19 VDSGLECAGFLNGLGF--NATVMIRSVPLRGF-----------------------------------DQQ--MAKLICEE   59 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~--~vtl~~~~~~l~~~-----------------------------------~~~--~~~~~~~~   59 (312)
                      -.+|+|+|..|++++.  +|+++++...++..                                   +++  +.......
T Consensus        13 G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (213)
T d1m6ia1          13 GTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPH   92 (213)
T ss_dssp             SHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSBCTTTTTT
T ss_pred             cHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhhhhhhhHHH
Confidence            3589999999998875  69999873222110                                   000  11112334


Q ss_pred             HhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC--cchHHHHHHH-HH--CCCcEEEEec
Q psy11185         60 MAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG--SGGLAAAKEA-AA--HGRKVIVLDY  134 (312)
Q Consensus        60 l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G--~~gl~~a~~~-~~--~~~~~~~ve~  134 (312)
                      +++.||+++++++|++++.+. .  .|.+.+|        .+++||.+||++|  +..+.+.... .+  ...+.+.+|.
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~-~--~V~l~dG--------~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~  161 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRD-N--MVKLNDG--------SQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNA  161 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGG-T--EEEETTS--------CEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCT
T ss_pred             HHHCCeEEEeCCEEEEeeccC-c--eeeeccc--------eeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhH
Confidence            577899999999999996532 2  6788776        5789999999999  3322222211 11  2223578888


Q ss_pred             cCCCCCCcccccCCccccccc----chhhHHHHHHHHHHHHHHHH
Q psy11185        135 VIPSPQGTTWGLGGTCVNVGC----IPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       135 ~~~~~~~~v~a~Gd~~~~~~~----~~~~~~~~a~~~~~~~~~~~  175 (312)
                      .++++ ++|||+|||+.....    ........+..+++.+..+.
T Consensus       162 ~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni  205 (213)
T d1m6ia1         162 ELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENM  205 (213)
T ss_dssp             TCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHH
T ss_pred             hcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHh
Confidence            88887 999999997654321    11134456777777777765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=5.9e-09  Score=89.22  Aligned_cols=158  Identities=19%  Similarity=0.243  Sum_probs=88.1

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccc-------------------cchh
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPK  158 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~  158 (312)
                      +++++|+||||+|.+|+.+|..+.+.  +.+|+++++.........|+.|+.+...+                   +.+.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~   81 (311)
T d1kf6a2           2 QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQD   81 (311)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHH
Confidence            56789999999999999999998875  55799999876555556677665432211                   1122


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCccCCccccccCHHH---------HHHHHHHHHHHhhHHHHHHHhcCCceEEece-eE--
Q psy11185        159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWAN---------LREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GK--  226 (312)
Q Consensus       159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~--  226 (312)
                      ............+.....++..+............         ....-.+-...+...+....+..+|+++..+ ..  
T Consensus        82 ~v~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~L  161 (311)
T d1kf6a2          82 VVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDI  161 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEE
T ss_pred             HHHHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeee
Confidence            22233334444444455566544321111100000         0000000011122233444566689988766 22  


Q ss_pred             EeeCCeEE----EEecCCCeEEEEcCeEEEccCCC
Q psy11185        227 FIDQHSVE----ATMKNGEKKTLTAENILIATGGR  257 (312)
Q Consensus       227 ~~~~~~~~----v~~~~G~~~~i~ad~vVlAtG~~  257 (312)
                      ..+...+.    ....+|+...+.|+.||||||+.
T Consensus       162 l~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         162 LVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             EEETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             EecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            22333322    23467877888999999999964

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.83  E-value=2e-09  Score=91.61  Aligned_cols=146  Identities=15%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC----cccccccchhhHHHHHHHHHHHHHHHHHcC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG----TCVNVGCIPKKLMHQAALLGEAIKDAVAYG  178 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  178 (312)
                      ++|++|||+|++|+.+|..|.+.|.+++++|+...  .+++|....    .|..    +....... .....   ...+.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~--iGGtW~~n~ypg~~~d~----~~~~~~~s-~~~~~---~~~~~   76 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD--VGGVWYWNRYPGARCDI----ESIEYCYS-FSEEV---LQEWN   76 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS--SCTHHHHCCCTTCBCSS----CTTTSSCC-SCHHH---HHHCC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC--cccccccCCCCCceecc----cccccccc-ccccc---cCCCC
Confidence            68999999999999999999999999999998643  344443211    0100    00000000 00000   00111


Q ss_pred             CccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccC--C
Q psy11185        179 WEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG--G  256 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG--~  256 (312)
                      +     ....+..+.+..|+..+.+.+...  ..+ +.+.++.... ...+...|++++.++  .++++|.||+|||  +
T Consensus        77 ~-----~~~~p~~~e~~~Yl~~~a~~~~L~--~~I-~f~t~V~~~~-~de~~~~W~V~~~~~--~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          77 W-----TERYASQPEILRYINFVADKFDLR--SGI-TFHTTVTAAA-FDEATNTWTVDTNHG--DRIRARYLIMASGQLS  145 (298)
T ss_dssp             C-----CBSSCBHHHHHHHHHHHHHHTTGG--GGE-ECSCCEEEEE-EETTTTEEEEEETTC--CEEEEEEEEECCCSCC
T ss_pred             C-----ccccCccchHHHHHHHHHHHcCCc--ccc-cCCcEEEEEE-EecCCCceeeccccc--cccccceEEEeecccc
Confidence            1     134556777888877776665421  011 1122222111 112346789998888  6889999999999  6


Q ss_pred             CCCCCCCCCCCcc
Q psy11185        257 RPNYPDIPGAKEH  269 (312)
Q Consensus       257 ~p~~p~~~g~~~~  269 (312)
                      .|..|.+++.+.+
T Consensus       146 ~~~~p~~~~~~i~  158 (298)
T d1w4xa1         146 DALTGALFKIDIR  158 (298)
T ss_dssp             CCTTHHHHTSEEE
T ss_pred             cccCCcccccccc
Confidence            7888888777643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.83  E-value=2.9e-08  Score=80.77  Aligned_cols=147  Identities=35%  Similarity=0.595  Sum_probs=102.3

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..+||++|||+||+|+.+|..+.+.+.+++++|+...        .|+.|...+|.+.+....+......+.....++..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~--------~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~   75 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT--------LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIK   75 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC--------SSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC--------CCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCc
Confidence            4579999999999999999999999999999997542        57778888888888777766666666665556654


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEe----------cCCCeEEEEcCeE
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATM----------KNGEKKTLTAENI  250 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~----------~~G~~~~i~ad~v  250 (312)
                      ..   ...+.+..+..+.......+............++++.+..............          .........++.+
T Consensus        76 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (229)
T d1ojta1          76 YP---EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNC  152 (229)
T ss_dssp             CC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             cc---CCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceE
Confidence            33   2456666666666555555555666667778899887775554433222110          1112356777888


Q ss_pred             EEccCCCC
Q psy11185        251 LIATGGRP  258 (312)
Q Consensus       251 VlAtG~~p  258 (312)
                      +++.|..+
T Consensus       153 ~l~~~~~~  160 (229)
T d1ojta1         153 IIAAGSRA  160 (229)
T ss_dssp             EECCCEEE
T ss_pred             EEEecccC
Confidence            99998653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=7.8e-09  Score=85.66  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      .+|+||||+|++|+.+|..+.+.+.+++++|+...
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            57999999999999999999999999999998654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.78  E-value=3.2e-08  Score=84.16  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=37.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .++|+||||+|++|+.+|..+.+.|.+|+++|+.........++.|.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~   61 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGG   61 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCC
Confidence            46899999999999999999999999999999876543333344444

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.74  E-value=9.7e-08  Score=82.02  Aligned_cols=49  Identities=33%  Similarity=0.418  Sum_probs=39.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                      ...+|+||||+|++|+.+|..+.+.|.+++++|+.........|+.|+.
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S~~a~GGi   51 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGM   51 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCE
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCchhhccchH
Confidence            4578999999999999999999999999999998765444445555553

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=7.6e-08  Score=70.64  Aligned_cols=91  Identities=15%  Similarity=0.197  Sum_probs=71.2

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN   98 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~   98 (312)
                      -++|+|+|.+|++.+.+|||+.|+.-++. ++.+.+.+.+.....+|.+++++.+.++..++...-.+.+.+..+..+  
T Consensus        36 GdsA~e~A~~L~~~a~~V~li~r~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~--  112 (126)
T d1trba2          36 GNTAVEEALYLSNIASEVHLIHRRDGFRA-EKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDN--  112 (126)
T ss_dssp             SHHHHHHHHHHTTTSSEEEEECSSSSCCC-CHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCC--
T ss_pred             CHHHHHHHHHHhhcCCcEEEEeecccccc-hhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCCce--
Confidence            36899999999999999999999755665 677778888888889999999999999987543333677776533211  


Q ss_pred             CccccccEEEEecC
Q psy11185         99 THKYDYDLLVLGGG  112 (312)
Q Consensus        99 ~~~~~~d~vivg~G  112 (312)
                      .+++++|-++|..|
T Consensus       113 ~~~l~~dgvFv~iG  126 (126)
T d1trba2         113 IESLDVAGLFVAIG  126 (126)
T ss_dssp             CEEEECSEEEECSC
T ss_pred             EEEEECCEEEEEeC
Confidence            14578999999877

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.70  E-value=6.4e-08  Score=82.86  Aligned_cols=46  Identities=37%  Similarity=0.525  Sum_probs=37.6

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG  148 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd  148 (312)
                      .+|+||||+|++|+.+|..+.+.|.+|+++|+.........++.|.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Gg   68 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGG   68 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSC
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCc
Confidence            5899999999999999999999999999999876544334444444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.70  E-value=5.2e-08  Score=83.35  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc--------------------------
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG--------------------------  154 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~--------------------------  154 (312)
                      ..++|+||||+|++|+.+|..+.+.|.+|+++|+.........++.|..+....                          
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~   96 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ   96 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccc
Confidence            347899999999999999999999999999999876554444455554322110                          


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHcCCccCCccc---cccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEE--e
Q psy11185        155 CIPKKLMHQAALLGEAIKDAVAYGWEIPNVKS---VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKF--I  228 (312)
Q Consensus       155 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~--~  228 (312)
                      +.+.............+.....++..+.....   ...+....+..-......+...+...+++.+++++..+ ...  .
T Consensus        97 ~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~  176 (317)
T d1qo8a2          97 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV  176 (317)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEE
T ss_pred             cchhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheee
Confidence            00011111122222333344445544321000   00000000000000001122234456677888886655 222  2


Q ss_pred             e-CCe---EEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        229 D-QHS---VEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       229 ~-~~~---~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      + ..+   +.+...+++...+.++.||+|||++...
T Consensus       177 ~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n  212 (317)
T d1qo8a2         177 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  212 (317)
T ss_dssp             CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             cccccceeeEeecccceEEEEeccceEEeccccccC
Confidence            2 222   3445566766779999999999976543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=8.5e-08  Score=82.45  Aligned_cols=51  Identities=29%  Similarity=0.524  Sum_probs=43.0

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      ..++|+||||+|++|+.+|..+.+.|.+|+++++.........||.|+.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a   55 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITV   55 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEEC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHhe
Confidence            458999999999999999999999999999999876655566777777543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.59  E-value=4.6e-07  Score=75.60  Aligned_cols=34  Identities=35%  Similarity=0.605  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +||+||||+|.+|+++|..|.+.|.+++++|+..
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            6899999999999999999999999999999854

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=4.1e-07  Score=73.21  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .||+||||+|++|+++|..+.+.+.++++++.+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            489999999999999999999999999998864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=3.5e-08  Score=71.48  Aligned_cols=50  Identities=28%  Similarity=0.398  Sum_probs=44.6

Q ss_pred             CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|++||.+ .++++++++.++. |++|+|||||++|+|.|..+...+.+|||
T Consensus         1 ~P~IpG~e-~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtl   50 (117)
T d1onfa2           1 FPPVKGIE-NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYI   50 (117)
T ss_dssp             CCSCTTGG-GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CcccCCHh-HcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhcccccee
Confidence            47889974 6788999988877 89999999999999999999999999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.8e-07  Score=67.48  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHh-ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMA-EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD   97 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~-~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~   97 (312)
                      -+.|+|.|.+|++.+.+|||++|+..++.. +.+    .++++ ..+|++++++++.++..+++....+++.+..++.. 
T Consensus        39 G~sA~~~A~~L~~~a~~V~li~r~~~~~~~-~~~----~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~-  112 (126)
T d1fl2a2          39 GNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-QVL----QDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI-  112 (126)
T ss_dssp             SHHHHHHHHHHHTTBSEEEEECSSSSCCSC-HHH----HHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCE-
T ss_pred             CHHHHHHHHhhhccCCceEEEecccccccc-ccc----ccccccccceeEEcCcceEEEEccccceeeEEEEECCCCCE-
Confidence            368999999999999999999996556653 332    33333 45799999999999987544434677876543322 


Q ss_pred             CCccccccEEEEecC
Q psy11185         98 NTHKYDYDLLVLGGG  112 (312)
Q Consensus        98 ~~~~~~~d~vivg~G  112 (312)
                        .++++|-+++..|
T Consensus       113 --~~l~vdgvFv~IG  125 (126)
T d1fl2a2         113 --HNIELAGIFVQIG  125 (126)
T ss_dssp             --EEEECSEEEECSC
T ss_pred             --EEEECCEEEEEeC
Confidence              5789999999988

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.51  E-value=3.3e-07  Score=76.26  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|+||||+|.+|+++|..|.+.|.+|+++|+..
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            6899999999999999999999999999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.49  E-value=5.8e-08  Score=83.63  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC--cEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~  136 (312)
                      .++|||+|++|+.+|..|++.+.  +++++|+..
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            58999999999999999887664  789999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.47  E-value=4.9e-07  Score=65.08  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=66.9

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      ..+-.++|+|+|+.|+.+|..+.+.|.++.+++...+.                                      +   
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i--------------------------------------l---   57 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI--------------------------------------L---   57 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS--------------------------------------S---
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc--------------------------------------c---
Confidence            45668999999999999999999999999998863210                                      0   


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                       +     .+|.            .+...+...+.+.||+++.++ ...++.........+|+.+++.+|.||+|+|
T Consensus        58 -~-----~~d~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          58 -P-----TYDS------------ELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -T-----TSCH------------HHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -c-----cccc------------hhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence             0     0111            112223345677799987776 5555666555555555557899999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=6.2e-07  Score=64.60  Aligned_cols=94  Identities=14%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE  180 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  180 (312)
                      .++..++|||+|+.|+.+|..+.+.|.++.+++...+.                                      +   
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~--------------------------------------l---   57 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP--------------------------------------L---   57 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS--------------------------------------S---
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchh--------------------------------------h---
Confidence            34567999999999999999999999999998863320                                      0   


Q ss_pred             cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee---CCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID---QHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                       +     ..|            ..+...+...+++.||++..++ ...+.   ...++++..+|  +++.+|.||+|||
T Consensus        58 -~-----~~d------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~D~vi~a~G  116 (116)
T d1gesa2          58 -P-----SFD------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIG  116 (116)
T ss_dssp             -T-----TSC------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             -h-----hcc------------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC--CEEEcCEEEEecC
Confidence             0     011            0122234455677899997776 33332   33578888898  6889999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2e-07  Score=72.53  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             hhhhhhHhhhccCCeEEEEEcc-CCC-----------ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE
Q psy11185         21 SGLECAGFLNGLGFNATVMIRS-VPL-----------RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY   88 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~~-~~l-----------~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~   88 (312)
                      .|+++|.+|+++|++|||+|+. .+-           .....++.+++.+++++.||++++|+.+++     +       
T Consensus        54 AGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-----~-------  121 (179)
T d1ps9a3          54 AGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-----D-------  121 (179)
T ss_dssp             HHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-----S-------
T ss_pred             HHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-----c-------
Confidence            7999999999999999999994 442           123568889999999999999999987752     1       


Q ss_pred             eeccccccCCCccccccEEEEecCcchHHHHHHHHHCCCcEEEE
Q psy11185         89 KNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVL  132 (312)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~v  132 (312)
                                 ...++|.||+++|...........+.+.++.++
T Consensus       122 -----------~~~~~d~vilAtG~~~~~~~~pg~~~g~~v~vi  154 (179)
T d1ps9a3         122 -----------QLQAFDETILASGIPNRALAQPLIDSGKTVHLI  154 (179)
T ss_dssp             -----------SSCCSSEEEECCCEECCTTHHHHHTTTCCEEEC
T ss_pred             -----------ccccceeEEEeecCCCcccccchhccCCEEEEE
Confidence                       234678999999965444444444555555554

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.42  E-value=1.9e-07  Score=75.09  Aligned_cols=142  Identities=14%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCC------------------------------------ccc------------hHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPL------------------------------------RGF------------DQQ   51 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l------------------------------------~~~------------~~~   51 (312)
                      +.|+++|..++++|.+|+|||+..+-                                    ..+            -..
T Consensus        13 paGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   92 (223)
T d1ebda1          13 PGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKK   92 (223)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhhHHHHHHHH
Confidence            47999999999999999999974321                                    000            112


Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC--------c----chHHHH
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG--------S----GGLAAA  119 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G--------~----~gl~~a  119 (312)
                      +.+.....++..+|+++.+..  .+..  .....+....+.       ..+..+.+||+.|        +    .++.+.
T Consensus        93 l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~-------~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~  161 (223)
T d1ebda1          93 LTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSA-------QTYTFKNAIIATGSRPIELVGRRPNTDELGLE  161 (223)
T ss_dssp             HHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEE-------EEEECSEEEECCCEEECCBSCEEESCSSSSTT
T ss_pred             HHhhHHHhhhccceeeeccEE--EEcc--Ccccceeccccc-------eEEecccEEEEcCCCccccccceecCCCCChH
Confidence            233344556677888876632  2322  121233332221       4567888888865        2    222222


Q ss_pred             HHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcC
Q psy11185        120 KEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYG  178 (312)
Q Consensus       120 ~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  178 (312)
                      ....+.+.+ .+.+|++++|+.|+|||+||++...     .+.+.+..+++....+. ++
T Consensus       162 ~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~-----~~~~~A~~~g~~aa~~i-~g  215 (223)
T d1ebda1         162 QIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP-----ALAHKASYEGKVAAEAI-AG  215 (223)
T ss_dssp             TTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHHHHH-TS
T ss_pred             hcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc-----ccHHHHHHHHHHHHHHH-cC
Confidence            112233333 4778899999999999999965443     34566777888777765 45

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.41  E-value=1.7e-06  Score=62.73  Aligned_cols=90  Identities=18%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      ..++|||+|+.|+.+|..+.+.+.++.+++...+.                                      +.     
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~--------------------------------------l~-----   67 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL--------------------------------------MS-----   67 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST--------------------------------------TT-----
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc--------------------------------------cc-----
Confidence            47999999999999999999999999999864320                                      00     


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                         ..++            ..+...+...+.+.||+++.+. ........  +.+.||  .++.+|.||+|+|
T Consensus        68 ---~~~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~--v~l~dg--~~i~~D~vi~a~G  121 (121)
T d1d7ya2          68 ---RAAP------------ATLADFVARYHAAQGVDLRFERSVTGSVDGV--VLLDDG--TRIAADMVVVGIG  121 (121)
T ss_dssp             ---TTSC------------HHHHHHHHHHHHTTTCEEEESCCEEEEETTE--EEETTS--CEEECSEEEECSC
T ss_pred             ---ccCC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE--EEECCC--CEEECCEEEEeeC
Confidence               0000            1222334456788899997665 44444443  456788  6899999999998

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.8e-06  Score=72.97  Aligned_cols=49  Identities=31%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      ..++|+||||+|++|+.+|..+.+.+ +++++|+.........|+.|+.+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~~a~Ggi~   53 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIA   53 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-----------
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchHHhCcceE
Confidence            45799999999999999999987766 89999987655444455555543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.40  E-value=1.6e-07  Score=75.56  Aligned_cols=141  Identities=16%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCcc--------------------------------------------------ch
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRG--------------------------------------------------FD   49 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~--------------------------------------------------~~   49 (312)
                      ..|+++|..++++|.+|+|||+...+.+                                                  ..
T Consensus        13 paGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   92 (221)
T d1dxla1          13 PGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAV   92 (221)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHHHHHHHHHH
Confidence            4799999999999999999998422211                                                  00


Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc---------chHHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS---------GGLAAAK  120 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~---------~gl~~a~  120 (312)
                      ..+.+.+...++..+|+++.... . +..  ...........      ....+.+|.||+++|.         .++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~~i~~~~-~-~~~--~~~~~~~~~~~------~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~  162 (221)
T d1dxla1          93 SNLTRGIEGLFKKNKVTYVKGYG-K-FVS--PSEISVDTIEG------ENTVVKGKHIIIATGSDVKGRTPFTSGLNLDK  162 (221)
T ss_dssp             HHHHHHHHHHHHHHTCEEEESCE-E-EEE--TTEEEECCSSS------CCEEEECSEEEECCCEEECCEEECCTTSCCTT
T ss_pred             HHHhhHHHHhhhcCCeEEEEecc-c-ccc--ccccccccccc------cccccccceEEEeECCCccCccccCCCCChHh
Confidence            12334445556666777754321 1 111  11111111111      1146688999999982         1222111


Q ss_pred             HHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        121 EAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       121 ~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      ...+.+.+ .+.+|..++|+.|+|||+||++.. +    .+.+.+..++.....+.
T Consensus       163 ~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g-~----~l~~~A~~~g~~aa~~i  213 (221)
T d1dxla1         163 IGVETDKLGRILVNERFSTNVSGVYAIGDVIPG-P----MLAHKAEEDGVACVEYL  213 (221)
T ss_dssp             TTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSS-C----CCHHHHHHHHHHHHHHH
T ss_pred             cCceEcCCCcEEeCCCcccCCCCEEEEeccCCC-c----ccHHHHHHHHHHHHHHH
Confidence            12222222 477888999999999999996533 2    34566667777776654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.38  E-value=1.6e-07  Score=68.67  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        258 PNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       258 p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |++|.+|+. ...+++++++.+...|++++|||||++|+|.|..+...+.+||+
T Consensus         2 ~~lP~ip~~-~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vti   54 (125)
T d1ojta2           2 TKLPFIPED-PRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDV   54 (125)
T ss_dssp             CCCSSCCCC-TTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCC-CcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEE
Confidence            566777765 34789999999999999999999999999999999999989987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.38  E-value=1.5e-07  Score=68.08  Aligned_cols=50  Identities=26%  Similarity=0.341  Sum_probs=45.1

Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.+|+.+ .++++++++.+...|++++|||||++|+|+|..+...+.+||+
T Consensus         1 P~~~~~~-~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtl   50 (117)
T d1ebda2           1 PNFKFSN-RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTI   50 (117)
T ss_dssp             TTBCCCS-SEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcCCCCC-CEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEE
Confidence            5677773 6789999999999999999999999999999999999999987

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.38  E-value=8.4e-07  Score=73.38  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             ccccccEEEEecCc-----------chHHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGS-----------GGLAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL  166 (312)
Q Consensus       100 ~~~~~d~vivg~G~-----------~gl~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~  166 (312)
                      ..+++|.+|++.|.           ..+.++..+ .+.+. ..+.++++++|+.|+|||+||++...     .+.+.+..
T Consensus       170 ~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~-----~l~~~A~~  244 (261)
T d1mo9a1         170 KVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP-----MEMFKARK  244 (261)
T ss_dssp             EEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS-----CSHHHHHH
T ss_pred             ceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc-----ccHHHHHH
Confidence            57899999999994           134444443 23333 34788999999999999999965332     35677888


Q ss_pred             HHHHHHHHHHcC
Q psy11185        167 LGEAIKDAVAYG  178 (312)
Q Consensus       167 ~~~~~~~~~~~~  178 (312)
                      +++....+. +|
T Consensus       245 ~G~~aa~~i-~G  255 (261)
T d1mo9a1         245 SGCYAARNV-MG  255 (261)
T ss_dssp             HHHHHHHHH-TT
T ss_pred             HHHHHHHHH-CC
Confidence            888888876 55

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.37  E-value=7.8e-08  Score=68.47  Aligned_cols=52  Identities=17%  Similarity=0.051  Sum_probs=41.8

Q ss_pred             CCCCCCCCcc-------eeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        260 YPDIPGAKEH-------CISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       260 ~p~~~g~~~~-------~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +|.+||++.|       .+|+.++... .+.+|+|+|||+|+||++.+.+|+..+++|++
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~   60 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY   60 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEE
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEE
Confidence            3778887553       5788777665 46778899999999999999999999888764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2e-07  Score=75.04  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=83.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCC------------------------------------ccc------------hHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPL------------------------------------RGF------------DQQ   51 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l------------------------------------~~~------------~~~   51 (312)
                      ..|+++|..++++|.+|+|+|+..+-                                    ..+            ...
T Consensus        13 paG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   92 (221)
T d3grsa1          13 SGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSR   92 (221)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhhhhheEEee
Confidence            57999999999999999999974320                                    000            012


Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc------------chHHHH
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS------------GGLAAA  119 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~------------~gl~~a  119 (312)
                      +.....+.+++.||+++.+.....    ......+  ....       ..+..+.+++++|.            .+|.+.
T Consensus        93 ~~~~~~~~~~~~gV~~i~G~a~~~----~~~~~~~--~~~~-------~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~  159 (221)
T d3grsa1          93 LNAIYQNNLTKSHIEIIRGHAAFT----SDPKPTI--EVSG-------KKYTAPHILIATGGMPSTPHERVPNTKDLSLN  159 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEC----SCSSCEE--EETT-------EEEECSCEEECCCEEECCCCTEEESCTTTTGG
T ss_pred             eccchhhhhccCceEEEEEeeeec----cccceee--eeec-------cccccceeEEecCccccCCCccccCCCCcCch
Confidence            223444557778888875532111    1111111  1111       35567888888882            222222


Q ss_pred             HHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        120 KEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       120 ~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      ..-.+.+.+ .+++|++++|+.|+|||+||++...     .+.+.+..+++.+.++.
T Consensus       160 ~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~-----~l~~~A~~~G~~aa~~~  211 (221)
T d3grsa1         160 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA-----LLTPVAIAAGRKLAHRL  211 (221)
T ss_dssp             GTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS-----CCHHHHHHHHHHHHHHH
T ss_pred             hcCcEECCCccEEeCCCccccCCcEEEEEEccCCc-----CcHHHHHHHHHHHHHHH
Confidence            212233333 4778999999999999999965432     34566777888777664

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=8.4e-08  Score=70.00  Aligned_cols=48  Identities=52%  Similarity=0.640  Sum_probs=43.8

Q ss_pred             CCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        264 PGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       264 ~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ||.+.+.+++++++.+...|+|++|||||++|+|.|..++..+.+|||
T Consensus         1 Pg~~e~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vti   48 (122)
T d1h6va2           1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV   48 (122)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCccceeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEE
Confidence            566567789999999999999999999999999999999999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.33  E-value=4.8e-06  Score=60.04  Aligned_cols=97  Identities=19%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ...+..++|||+|+.|+.+|..+.+.|.++.+++...+.-                                        
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll----------------------------------------   58 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL----------------------------------------   58 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS----------------------------------------
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC----------------------------------------
Confidence            3566789999999999999999999999999988643210                                        


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEecCC-CeEEEEcCeEEEccC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATMKNG-EKKTLTAENILIATG  255 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G-~~~~i~ad~vVlAtG  255 (312)
                             ...|            ..+...+...+++.||++..++ ...+  +...++++..++ ..+++.+|.|++|+|
T Consensus        59 -------~~~d------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          59 -------PAVD------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             -------TTSC------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             -------Cccc------------chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                   0001            1222234456778899998776 3333  344556655333 246899999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.4e-06  Score=68.25  Aligned_cols=121  Identities=10%  Similarity=0.080  Sum_probs=78.6

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEcc-C---CC--------c-----cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRS-V---PL--------R-----GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD   81 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~-~---~l--------~-----~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~   81 (312)
                      -++||++|.+++++|.+|+|||+. .   .+        .     ....++.+....++.+.++++... .++++....+
T Consensus        14 GpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~   92 (190)
T d1trba1          14 GPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNR   92 (190)
T ss_dssp             SHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSS
T ss_pred             CHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCC
Confidence            368999999999999999999973 2   11        1     135678888888899999998755 5676664332


Q ss_pred             CeeEEEEeeccccccCCCccccccEEEEecCcch------HHHHHHHHHCCCcEEEEe-----ccCCCCCCcccccCCcc
Q psy11185         82 GKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG------LAAAKEAAAHGRKVIVLD-----YVIPSPQGTTWGLGGTC  150 (312)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g------l~~a~~~~~~~~~~~~ve-----~~~~~~~~~v~a~Gd~~  150 (312)
                      . ..+....         ..++++.+|++.|...      ........+.....+.++     ...+|+.|+||++||+.
T Consensus        93 ~-~~v~~~~---------~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~  162 (190)
T d1trba1          93 P-FRLNGDN---------GEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM  162 (190)
T ss_dssp             S-EEEEESS---------CEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGG
T ss_pred             c-EEEEEee---------eeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeEEec
Confidence            2 3333221         4678899999999421      110000011122345555     34479999999999954

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.30  E-value=1.4e-07  Score=73.29  Aligned_cols=53  Identities=15%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc
Q psy11185        214 RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE  268 (312)
Q Consensus       214 ~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~  268 (312)
                      ...++.+..+.....+.....+.+.++  +++.||.||+|||..|..+.+++...
T Consensus        66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~li~atG~~~~~~~i~~~~~  118 (186)
T d1fcda1          66 RAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDRCVVAPGIELIYDKIEQRAG  118 (186)
T ss_dssp             HTTTEEEECCCEEECCTTTTEEEETTS--CEEECSEEEECCCEEECCTTSTEEEC
T ss_pred             cccceeEeeeeeEeeeeccceeecccc--eeeccceEEEEeccccchhhhhhhhh
Confidence            455777777766655555555666777  78999999999999888877776543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.28  E-value=2.8e-06  Score=62.22  Aligned_cols=85  Identities=18%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC-Cee-EEEEeecccccc
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD-GKL-KVQYKNVAEVRQ   96 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~-~~~-~v~~~~~~~~~~   96 (312)
                      -+.|+|+|.+|++...+|||++|+.-|+.. +.+   +.+.++...|++++++.+.++..+.. +.+ .+.+++..++..
T Consensus        43 GdsA~e~A~~L~~~a~~V~li~r~~~~ra~-~~~---~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~  118 (130)
T d1vdca2          43 GDSAMEEANFLTKYGSKVYIIHRRDAFRAS-KIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV  118 (130)
T ss_dssp             SHHHHHHHHHHTTTSSEEEEECSSSSCCSC-HHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCE
T ss_pred             chHHHHHHHHHhCCCCcEEEEEeccccccc-hhh---hhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCE
Confidence            358999999999999999999997666763 332   23344556799999999999987543 223 567766443322


Q ss_pred             CCCccccccEEEEe
Q psy11185         97 DNTHKYDYDLLVLG  110 (312)
Q Consensus        97 ~~~~~~~~d~vivg  110 (312)
                         .++++|-++|+
T Consensus       119 ---~~l~~dGvFVa  129 (130)
T d1vdca2         119 ---SDLKVSGLFFA  129 (130)
T ss_dssp             ---EEEECSEEEEC
T ss_pred             ---EEEECCEEEEE
Confidence               57899999986

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.2e-07  Score=67.13  Aligned_cols=49  Identities=37%  Similarity=0.578  Sum_probs=44.1

Q ss_pred             CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       262 ~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ++||. ++.+++++++.+...|+|++|||||++|+|.|..+...+.+||+
T Consensus         2 ~IPG~-e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtl   50 (125)
T d3grsa2           2 QIPGA-SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL   50 (125)
T ss_dssp             TSTTG-GGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCc-cccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEE
Confidence            46776 46789999999999999999999999999999999999999987

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=3.5e-07  Score=72.12  Aligned_cols=121  Identities=7%  Similarity=-0.016  Sum_probs=79.4

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC---------------------ccchHHHHHHHHHHHhccceEEEeeceeeEEE
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL---------------------RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT   77 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l---------------------~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~   77 (312)
                      +.|+++|.+++++|.+|+|+|+. ...                     ....+++...+.+++++.|+++... .|.+++
T Consensus        15 paGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~   93 (192)
T d1vdca1          15 PAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVD   93 (192)
T ss_dssp             HHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEE
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcceeeee-eEEecc
Confidence            58999999999999999999963 210                     0135788888888888889999755 577776


Q ss_pred             EcCCCeeEEEEeeccccccCCCccccccEEEEecCcch------HHHHHHHHHCCC-cEEEEe-ccCCCCCCcccccCCc
Q psy11185         78 KLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG------LAAAKEAAAHGR-KVIVLD-YVIPSPQGTTWGLGGT  149 (312)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g------l~~a~~~~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~  149 (312)
                      ...+. ..+.. +.        ....+|.+++..|...      ..+.....+.+. ..++++ ..++|+.|+||++||+
T Consensus        94 ~~~~~-~~v~~-~~--------~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv  163 (192)
T d1vdca1          94 FSSKP-FKLFT-DS--------KAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDV  163 (192)
T ss_dssp             CSSSS-EEEEC-SS--------EEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGG
T ss_pred             cccCc-EEecc-cc--------eeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEeeec
Confidence            54333 23322 11        3567888998888421      111111122222 234444 5789999999999995


Q ss_pred             cc
Q psy11185        150 CV  151 (312)
Q Consensus       150 ~~  151 (312)
                      ..
T Consensus       164 ~~  165 (192)
T d1vdca1         164 QD  165 (192)
T ss_dssp             GC
T ss_pred             CC
Confidence            43

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.25  E-value=6.7e-06  Score=69.10  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      |+||||+|.+|+++|..|.+.|. +|+++|+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            89999999999999999999986 699999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=5.5e-07  Score=65.49  Aligned_cols=51  Identities=27%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.++-.....+++++++.+...|++++|||||++|+|.|..+...+.+|||
T Consensus         1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vti   51 (122)
T d1v59a2           1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTV   51 (122)
T ss_dssp             TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeE
Confidence            344422345789999999999999999999999999999999999999986

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=2.4e-07  Score=75.45  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             HHHHHhccceEEEeeceeeEEEEc--CCCeeEEEEeeccccccCCCccccccEEEEecCcc-------------hHHHHH
Q psy11185         56 ICEEMAEGGVHFLHKCLPLSVTKL--ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG-------------GLAAAK  120 (312)
Q Consensus        56 ~~~~l~~~gi~~~~~~~v~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~-------------gl~~a~  120 (312)
                      +...|+..||+++.+.........  ....+.+...++..      .++++|.+|++.|..             ++.+..
T Consensus       100 ~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~------~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~  173 (233)
T d1xdia1         100 ITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGST------SEHEADVVLVATGASPRILPSGSVPNTSGLGLER  173 (233)
T ss_dssp             HHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCE------EEEEESEEEECCCEEECCCGGCEEECCSSSCTTT
T ss_pred             eehhhcccceeEEECcccccccccccccceEEEEecCCce------eeeecceeeeecCcccccccccccccccccccch
Confidence            455677889999876322110000  11112333333321      578999999999941             222211


Q ss_pred             HHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        121 EAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       121 ~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      ...+.+. ..+.+|+.++|+.|+|||+||++.. .    .+.+.+..+++....+.
T Consensus       174 ~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~-~----~l~~~A~~~g~~aa~~~  224 (233)
T d1xdia1         174 VGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGL-L----PLASVAAMQGRIAMYHA  224 (233)
T ss_dssp             TTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTS-C----SCHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCcCCcCCCcccCCCCEEEEEEeCCC-c----hhHHHHHHHHHHHHHHH
Confidence            1122222 3478899999999999999996433 2    45667777888877766

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.23  E-value=5.3e-06  Score=61.04  Aligned_cols=92  Identities=23%  Similarity=0.263  Sum_probs=62.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      ..++|||+|+.|+++|..+.+.+.++.+++.....                                      +.     
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~--------------------------------------l~-----   72 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV--------------------------------------LE-----   72 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST--------------------------------------TT-----
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccc--------------------------------------cc-----
Confidence            47999999999999999999999999999864320                                      00     


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee----CCe-EEEEecCCCeEEEEcCeEEEccC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID----QHS-VEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~----~~~-~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                          ....+           .+...+...++..||++..+. ...++    ... ..+.+++|  .++.+|.||+|+|
T Consensus        73 ----~~~~~-----------~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G--~~i~~D~vi~a~G  133 (133)
T d1q1ra2          73 ----RVTAP-----------PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIG  133 (133)
T ss_dssp             ----TTSCH-----------HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS--CEEECSEEEECCC
T ss_pred             ----cccch-----------hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC--CEEECCEEEEeeC
Confidence                00000           112223345677799987665 33332    222 34778898  6899999999998

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.23  E-value=9.9e-07  Score=76.09  Aligned_cols=39  Identities=36%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             ccccccEEEEecCcchHHHHHHHHH----CCCcEEEEeccCCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAA----HGRKVIVLDYVIPS  138 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~----~~~~~~~ve~~~~~  138 (312)
                      +.+++|+||||+|++|+.+|..+.+    .|.+|+++|+....
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            5789999999999999999988754    67899999986543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.22  E-value=1.9e-06  Score=66.55  Aligned_cols=142  Identities=15%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             hhhhhhhHhhhccCC--eEEEEEcc-CCCccchHH-H---------HHHHHHHHhccceEEEeeceeeEEEEcCCCeeEE
Q psy11185         20 DSGLECAGFLNGLGF--NATVMIRS-VPLRGFDQQ-M---------AKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKV   86 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~--~vtl~~~~-~~l~~~~~~-~---------~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v   86 (312)
                      .+|+|+|..|++++.  +|||+|++ ..+...... .         .......+...+|.+..++... +.  ... ..+
T Consensus        12 ~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~--~~~-~~~   87 (186)
T d1fcda1          12 TGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATG-ID--PDK-KLV   87 (186)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEE-CC--TTT-TEE
T ss_pred             HHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEe-ee--ecc-cee
Confidence            479999999999984  89999984 433221111 0         0111233445667776553332 21  111 244


Q ss_pred             EEeeccccccCCCccccccEEEEecCcc---------hHHHHHHH-HHCCC-cEEEEec-cCCCCCCcccccCCcccccc
Q psy11185         87 QYKNVAEVRQDNTHKYDYDLLVLGGGSG---------GLAAAKEA-AAHGR-KVIVLDY-VIPSPQGTTWGLGGTCVNVG  154 (312)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~d~vivg~G~~---------gl~~a~~~-~~~~~-~~~~ve~-~~~~~~~~v~a~Gd~~~~~~  154 (312)
                      .+.++        .++++|.+||++|..         ........ ..... .+.+.+. ...++.+++|++||++...+
T Consensus        88 ~~~~~--------~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~  159 (186)
T d1fcda1          88 KTAGG--------AEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP  159 (186)
T ss_dssp             EETTS--------CEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTT
T ss_pred             ecccc--------eeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccccCC
Confidence            44443        678999999999941         11211111 11122 2333333 44688899999999765544


Q ss_pred             cchhhHHHHHHHHHHHHHHHH
Q psy11185        155 CIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       155 ~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      ..  +....+..+++.+..+.
T Consensus       160 ~p--~~~~~A~~q~~~~A~ni  178 (186)
T d1fcda1         160 MP--KSGYSANSQGKVAAAAV  178 (186)
T ss_dssp             CC--SSHHHHHHHHHHHHHHH
T ss_pred             CC--chHhHHHHHHHHHHHHH
Confidence            32  33455566666665543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=5.1e-07  Score=73.34  Aligned_cols=106  Identities=9%  Similarity=0.053  Sum_probs=61.6

Q ss_pred             HHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc------------hHHHHHHHH
Q psy11185         56 ICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG------------GLAAAKEAA  123 (312)
Q Consensus        56 ~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~------------gl~~a~~~~  123 (312)
                      +...|++.+|++..+...  +.  ..+...+....+.      ...+.++.++++.|..            .+.+.....
T Consensus       107 ~~~~l~~~~V~vi~G~~~--~~--~~~~~~v~~~~~~------~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv  176 (235)
T d1h6va1         107 YRVALREKKVVYENAYGK--FI--GPHKIMATNNKGK------EKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGV  176 (235)
T ss_dssp             HHHHHHHHTCEEECCEEE--EE--ETTEEEEECTTSC------EEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTC
T ss_pred             hhhhhhccCceEEEeEEe--ec--cccceeccccccc------ccccccccceeecCCCceeEEEeeccceeecccccee
Confidence            445666778888765432  22  1222233322221      1357789999999931            111111112


Q ss_pred             HCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        124 AHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       124 ~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      +.+.  ..+.+|.+++|+.|+|||+||++....    .+.+.|..+++.+..+.
T Consensus       177 ~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~----~l~~~A~~eG~~aa~~~  226 (235)
T d1h6va1         177 KINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL----ELTPVAIQAGRLLAQRL  226 (235)
T ss_dssp             CCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSC----CCHHHHHHHHHHHHHHH
T ss_pred             eeccccCccccCCccccCCCCEEEEEeccCCCc----ccHHHHHHHHHHHHHHH
Confidence            2222  348889999999999999999765432    34556777777777655

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=7.9e-06  Score=60.42  Aligned_cols=92  Identities=21%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             ccEEEEecCcchHHHHHHHH----HCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW  179 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~----~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  179 (312)
                      ..++|||+|+.|+.+|..+.    ..+.++++++.....                                      +. 
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~--------------------------------------l~-   78 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN--------------------------------------MG-   78 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST--------------------------------------TT-
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC--------------------------------------Cc-
Confidence            36899999999999988774    357788888753210                                      00 


Q ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                             ..++            +.+...+...++..||+++.++ ...+  +...+.+++++|  +++.+|.||+|+|
T Consensus        79 -------~~~~------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          79 -------KILP------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVG  136 (137)
T ss_dssp             -------TTSC------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCC
T ss_pred             -------ccCC------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEEeec
Confidence                   0000            1122234456788899998775 3333  456788999999  7899999999999

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.17  E-value=7.8e-07  Score=67.61  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=50.1

Q ss_pred             ccCCCCCCC-CCCCCCc---ceeccccccCCCCCCCe-EEEE--cCchhhHHHHHHhhcCceeeee
Q psy11185        253 ATGGRPNYP-DIPGAKE---HCISSDDIFSLEKPPGK-TLVV--GAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       253 AtG~~p~~p-~~~g~~~---~~~~~~~~~~~~~~~~~-v~Vv--G~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |||+.|..| ++||.+.   +++++++++.....+++ ++|+  |||++|+|+|..|+..+.+||+
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtl   69 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI   69 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEE
Confidence            899998886 7999864   46799999888877776 5554  9999999999999999999997

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.16  E-value=5.7e-07  Score=65.51  Aligned_cols=51  Identities=29%  Similarity=0.380  Sum_probs=43.8

Q ss_pred             CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |.++.....++++++++.+...|++++|||||.+|+|.|..+...+.+||+
T Consensus         3 Pgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtv   53 (123)
T d1dxla2           3 PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTV   53 (123)
T ss_dssp             TTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEE
Confidence            444433446789999999999999999999999999999999999999987

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.14  E-value=1.6e-06  Score=69.58  Aligned_cols=73  Identities=21%  Similarity=0.338  Sum_probs=48.3

Q ss_pred             ccccccEEEEecCcc-----------hHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSG-----------GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLG  168 (312)
Q Consensus       100 ~~~~~d~vivg~G~~-----------gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~  168 (312)
                      ..+.+|.+||++|..           +........+.+...+.+|..++|+.|+|||+||+.. .+    .+.+.+..++
T Consensus       131 ~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~-~~----~l~~~a~~~g  205 (220)
T d1lvla1         131 QRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAG-EP----MLAHRAMAQG  205 (220)
T ss_dssp             EEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGC-SS----CCHHHHHHHH
T ss_pred             eeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCC-cc----cchhhhhhhH
Confidence            467899999999932           2211111122234578899999999999999999543 33    3556667777


Q ss_pred             HHHHHHHHcC
Q psy11185        169 EAIKDAVAYG  178 (312)
Q Consensus       169 ~~~~~~~~~~  178 (312)
                      ..+.++. +|
T Consensus       206 ~~~a~~i-~G  214 (220)
T d1lvla1         206 EMVAEII-AG  214 (220)
T ss_dssp             HHHHHHH-TT
T ss_pred             HHHHHHH-cC
Confidence            7776654 44

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.14  E-value=1.2e-06  Score=70.90  Aligned_cols=42  Identities=17%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        129 VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       129 ~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      .+.+|.+++|+.|+|||+||++.. +    .+.+.+..++.....+.
T Consensus       180 ~I~vd~~~~TsvpgVyAaGDv~~~-~----~l~~~A~~eG~~Aa~~i  221 (229)
T d1ojta1         180 FIEVDKQMRTNVPHIYAIGDIVGQ-P----MLAHKAVHEGHVAAENC  221 (229)
T ss_dssp             CCCCCTTSBCSSTTEEECGGGTCS-S----CCHHHHHHHHHHHHHHH
T ss_pred             CEEcCCCccCCCCCEEEEEecCCC-c----chHHHHHHHHHHHHHHH
Confidence            477899999999999999996433 2    34556777777776654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1e-06  Score=64.31  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=42.5

Q ss_pred             CCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        259 NYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       259 ~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.+.+||.+.|    ...+...+..-+.+|+|+|||+|.||+++|.+|+..+++|||
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~l   58 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL   58 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEE
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEE
Confidence            45788888776    233344455557889999999999999999999999999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.2e-06  Score=66.52  Aligned_cols=126  Identities=12%  Similarity=0.051  Sum_probs=82.1

Q ss_pred             hhhhhhhhHhhhccCCeEEEEEcc---CCC------------ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe
Q psy11185         19 VDSGLECAGFLNGLGFNATVMIRS---VPL------------RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK   83 (312)
Q Consensus        19 ~~ig~E~A~~l~~~g~~vtl~~~~---~~l------------~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~   83 (312)
                      -++|+++|.+++++|.+|+|||++   +++            ....+.+...+..+.++.+++.........+.......
T Consensus        10 GpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T d1fl2a1          10 GPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEG   89 (184)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTT
T ss_pred             CHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeeeccccccc
Confidence            368999999999999999999962   222            11247777778888888888888877777665432221


Q ss_pred             -eEEEEeeccccccCCCccccccEEEEecCc--chHHH-HHHHHHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185         84 -LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS--GGLAA-AKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        84 -~~v~~~~~~~~~~~~~~~~~~d~vivg~G~--~gl~~-a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                       ........       ...+.++.++++.|.  ..... ...........+.++...+++.|++|++||+..
T Consensus        90 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~  154 (184)
T d1fl2a1          90 GLHQIETAS-------GAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTT  154 (184)
T ss_dssp             CCEEEEETT-------SCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBS
T ss_pred             ceeeeeeec-------ceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecC
Confidence             11111111       146778889998884  11111 111111222457788889999999999999543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.11  E-value=1.1e-05  Score=58.37  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      .+++|||+|+.|+.+|..+.+.|.++.+++.....     .                                       
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l-----~---------------------------------------   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-----L---------------------------------------   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-----T---------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc-----c---------------------------------------
Confidence            46899999999999999999999999998853210     0                                       


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATG  255 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG  255 (312)
                          .+|            ..+...+...+.+.||+++.++ ....+...+   ..++  ..+.+|.||+|+|
T Consensus        69 ----~~d------------~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v---~~~~--~~i~~D~vi~a~G  120 (122)
T d1xhca2          69 ----GLD------------EELSNMIKDMLEETGVKFFLNSELLEANEEGV---LTNS--GFIEGKVKICAIG  120 (122)
T ss_dssp             ----TCC------------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEE---EETT--EEEECSCEEEECC
T ss_pred             ----CCC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE---EeCC--CEEECCEEEEEEE
Confidence                000            0122223355677899997765 444444433   2355  6899999999999

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.08  E-value=2.4e-05  Score=56.01  Aligned_cols=94  Identities=14%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC---CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH---GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAY  177 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~---~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  177 (312)
                      ..+-.++|||+|+.|+.+|..+.+.   +.++.+++.....                                      +
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i--------------------------------------l   57 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI--------------------------------------L   57 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS--------------------------------------S
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccc--------------------------------------c
Confidence            3456899999999999999766543   5678887753210                                      0


Q ss_pred             CCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee---CCeEEEEecCCCeEEEEcCeEEEc
Q psy11185        178 GWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID---QHSVEATMKNGEKKTLTAENILIA  253 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~---~~~~~v~~~~G~~~~i~ad~vVlA  253 (312)
                          +     .+|            ..+...+...+++.||++..++ ...+.   .....+.+++|  .++.+|.||+|
T Consensus        58 ----~-----~~d------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g--~~i~~D~Vi~a  114 (117)
T d1feca2          58 ----R-----GFD------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLA  114 (117)
T ss_dssp             ----T-----TSC------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEEC
T ss_pred             ----c-----ccc------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC--CEEEcCEEEEe
Confidence                0     001            0122234456788899997776 44442   34567888898  68999999999


Q ss_pred             cC
Q psy11185        254 TG  255 (312)
Q Consensus       254 tG  255 (312)
                      ||
T Consensus       115 ~G  116 (117)
T d1feca2         115 IG  116 (117)
T ss_dssp             SC
T ss_pred             cC
Confidence            98

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.8e-05  Score=61.76  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +.+.|++|||+||+|+.+|..+.+.+.+++++|...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            457799999999999999999999999999998643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.6e-06  Score=68.12  Aligned_cols=52  Identities=23%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             HhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCC
Q psy11185        213 LRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGA  266 (312)
Q Consensus       213 ~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~  266 (312)
                      +.+.+|++..++ +..++...-++++++|  .++.||.||+|||+.|..+++++.
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~~~V~l~dG--~~i~~d~lViAtG~~~~~~~l~~~  145 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTEPNVELAKT  145 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEEECCTTHHH
T ss_pred             HHHCCeEEEeCCEEEEeeccCceeeeccc--eeeccceEEEeeeeecchhhhhhc
Confidence            456789987776 6666655556778889  789999999999988776655543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.00  E-value=3.5e-05  Score=62.50  Aligned_cols=56  Identities=11%  Similarity=0.103  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++.+.+.+.+++.||+++++++|+++..+++....+.+.++        +.+.+|.||++.|-
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g--------~~i~a~~vI~AtGg  165 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--------EVLETNHVVIAVGG  165 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--------CEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCC--------CeEecCeEEEccCC
Confidence            345667778888899999999999999865443334566554        57899999999993

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=5.8e-06  Score=64.10  Aligned_cols=31  Identities=35%  Similarity=0.575  Sum_probs=29.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDY  134 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~  134 (312)
                      ||++|||+||+|+.+|..+.+.+.+++++|+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEE
Confidence            7999999999999999999999999999985

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.3e-06  Score=65.24  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCcc-eeccccccC-CCCCCCeEEEEcCchhhHHHHHHhhcCcee
Q psy11185        258 PNYPDIPGAKEH-CISSDDIFS-LEKPPGKTLVVGAGYIGKLETWDSNSGCGN  308 (312)
Q Consensus       258 p~~p~~~g~~~~-~~~~~~~~~-~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~  308 (312)
                      |+.|++||.+.. .++..+++. ....++||+|||||++|+|+|..+...+..
T Consensus         2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            788999999764 566656553 446778999999999999999998776544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=1.5e-05  Score=62.45  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++.++|++|||+||+|+.+|..+.+.+.+++++|...
T Consensus         2 ~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4567899999999999999999999999999998643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=4.9e-06  Score=69.48  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=31.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ++|++|||+||+|+.+|..|.+.|.+++++|+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5699999999999999999999999999999753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.93  E-value=4.2e-05  Score=54.94  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ..++|||+|+.|+.+|..+.+.+.++.+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~   54 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRT   54 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence            47899999999999999999999999888853

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.88  E-value=5.2e-05  Score=54.68  Aligned_cols=91  Identities=21%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN  183 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (312)
                      ..++|||+|+.|+.+|..+.+.|.++.+++...+.                                      +.     
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~--------------------------------------l~-----   67 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP--------------------------------------LG-----   67 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST--------------------------------------TT-----
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc--------------------------------------cc-----
Confidence            47899999999999999999999999999864310                                      00     


Q ss_pred             ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeC-CeEEEEecCCCeEEEEcCeEEEcc
Q psy11185        184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQ-HSVEATMKNGEKKTLTAENILIAT  254 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~-~~~~v~~~~G~~~~i~ad~vVlAt  254 (312)
                         ...|            ..+...+...++..||++..++ ...++. ..+.....+|  .++.+|.||+|.
T Consensus        68 ---~~~d------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg--~~i~~D~vi~aI  123 (123)
T d1nhpa2          68 ---VYLD------------KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDK--NAYDADLVVVAV  123 (123)
T ss_dssp             ---TTCC------------HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESS--CEEECSEEEECS
T ss_pred             ---cccc------------hhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCC--CEEECCEEEEEC
Confidence               0011            1222334456778899997776 444432 2333334566  589999999984

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=1.7e-06  Score=63.15  Aligned_cols=36  Identities=17%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             ccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        276 IFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       276 ~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .+..-+.+|+|+|||+|.||+++|..|+..+++||+
T Consensus        20 cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~l   55 (126)
T d1trba2          20 SDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHL   55 (126)
T ss_dssp             HHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             cchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEE
Confidence            333446789999999999999999999999999997

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.86  E-value=7.2e-06  Score=58.88  Aligned_cols=48  Identities=46%  Similarity=0.719  Sum_probs=38.4

Q ss_pred             CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcC---ceeeee
Q psy11185        263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSG---CGNVTI  311 (312)
Q Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~---~~~V~~  311 (312)
                      +||. ++.+++++++.+...|++++|||||++|+|.|..+...   +.+||+
T Consensus         1 iPG~-~~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtl   51 (117)
T d1aoga2           1 IPGI-EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTL   51 (117)
T ss_dssp             CTTG-GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CcCc-cceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEE
Confidence            4675 45789999999999999999999999999988665433   346775

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.86  E-value=1.9e-06  Score=67.04  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=33.8

Q ss_pred             hcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185        214 RDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       214 ~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      ...++++..+. ...++.....+.+.+|  +++.+|.||+|+|..|+.
T Consensus        66 ~~~~i~~~~~~~v~~i~~~~~~~~~~~g--~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          66 RAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             GSTTCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECC
T ss_pred             hcCCeEEEEeccccccccccceeEecCC--cEeeeeeEEEEEEEEccc
Confidence            35578887664 5555555556677888  789999999999988865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=8.3e-07  Score=71.99  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-------CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-------RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-------~~~~~ve~~~  136 (312)
                      ++.++|||+||+||++|..|.+.|       .++.++|+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            468999999999999999998766       3689999754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=1.6e-05  Score=60.40  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             hhhhhhhHhhhccCCe-------------------------------------EEEEEc-c-CCCccchHHHHHHHHHHH
Q psy11185         20 DSGLECAGFLNGLGFN-------------------------------------ATVMIR-S-VPLRGFDQQMAKLICEEM   60 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~-------------------------------------vtl~~~-~-~~l~~~~~~~~~~~~~~l   60 (312)
                      ++|+|+|..+.++|.+                                     +++++. . .+-..++..........+
T Consensus        39 ~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  118 (162)
T d1ps9a2          39 GIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTL  118 (162)
T ss_dssp             HHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHH
Confidence            4799999999999864                                     455544 3 344556666677888899


Q ss_pred             hccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         61 AEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        61 ~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +..||+++.++++.++.  +++ +.+.. +++      ..++++|.||+++|.
T Consensus       119 ~~~gv~~~~~~~v~~i~--~~g-v~~~~-~g~------e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         119 LSRGVKMIPGVSYQKID--DDG-LHVVI-NGE------TQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHTTCEEECSCEEEEEE--TTE-EEEEE-TTE------EEEECCSEEEECCCE
T ss_pred             hhCCeEEEeeeEEEEEc--CCC-CEEec-CCe------EEEEECCEEEECCCC
Confidence            99999999999999885  333 33332 222      156899999999984

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.82  E-value=2.4e-05  Score=58.85  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CCCCCcchh------hhhhhhhHhhhccCC-eEEEEEccC--CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC
Q psy11185         11 PKGNLKDKV------DSGLECAGFLNGLGF-NATVMIRSV--PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD   81 (312)
Q Consensus        11 ~~~~~~~~~------~ig~E~A~~l~~~g~-~vtl~~~~~--~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~   81 (312)
                      |.-.++++|      ++|+|+|..+.++|+ +|++++|+.  .++....+     ...+.+.+++++.+..+.++....+
T Consensus        40 ~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~ei~~~~~  114 (153)
T d1gtea3          40 PLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFLSPRKVIVKGG  114 (153)
T ss_dssp             CCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             ccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhh-----eeecccccceeEeccccEEEEecCC
Confidence            444455555      589999999999986 588999842  23333322     3445667899999988888876433


Q ss_pred             CeeEEEEee---cccc----ccCCCccccccEEEEecC
Q psy11185         82 GKLKVQYKN---VAEV----RQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        82 ~~~~v~~~~---~~~~----~~~~~~~~~~d~vivg~G  112 (312)
                      ....+....   .+.+    .++...++++|.||++.|
T Consensus       115 ~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG  152 (153)
T d1gtea3         115 RIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG  152 (153)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             ceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence            222232211   0000    011125689999999988

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.78  E-value=2.9e-05  Score=60.86  Aligned_cols=49  Identities=18%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             HHhcCCceEEece-eEEee--CCeEEEEe-cCCCeEEEEcCeEEEccCCCCCC
Q psy11185        212 MLRDKKVDYLNAL-GKFID--QHSVEATM-KNGEKKTLTAENILIATGGRPNY  260 (312)
Q Consensus       212 ~~~~~gV~~~~~~-~~~~~--~~~~~v~~-~~G~~~~i~ad~vVlAtG~~p~~  260 (312)
                      .+.+.+|++...+ ...++  ...++++. .+|++.++.+|.+|+|+|+.|..
T Consensus        65 ~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             HHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             HHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence            4567799986655 54454  45566654 67777889999999999987654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.73  E-value=1.1e-05  Score=64.40  Aligned_cols=70  Identities=20%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             ccccccEEEEecCcch-----------HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGSGG-----------LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALL  167 (312)
Q Consensus       100 ~~~~~d~vivg~G~~g-----------l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~  167 (312)
                      ..+.++.++++.|...           +.+.......+. ..+.+|.+++|+.|+|||+||++...     .+.+.+...
T Consensus       139 ~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~-----~l~~~A~~~  213 (229)
T d3lada1         139 QVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA-----MLAHKASEE  213 (229)
T ss_dssp             EEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC-----CCHHHHHHH
T ss_pred             eeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchH-----HHHHHHHHH
Confidence            3567788888888311           111100111222 24778899999999999999965443     233445555


Q ss_pred             HHHHHHH
Q psy11185        168 GEAIKDA  174 (312)
Q Consensus       168 ~~~~~~~  174 (312)
                      +......
T Consensus       214 G~~aa~~  220 (229)
T d3lada1         214 GVVVAER  220 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.65  E-value=0.00062  Score=55.13  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-eeEEEEeeccccccCCCccccccEEEEecCc----------chHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------GGLAA  118 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------~gl~~  118 (312)
                      .++.+.+.+.+++.||++++++.|++++...++ .+...+..+.       .++.+|.||+++|-          .|+.+
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~-------~~~~a~~VIiAtGG~S~p~~G~~g~g~~~  181 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS-------TQWQCKNLIVATGGLSMPGLGATPFGYQI  181 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT-------EEEEESEEEECCCCSSCGGGTCCSHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCC-------EEEEeCEEEEcCCcccccccCCCchHHHH
Confidence            346677788888899999999999999875543 2233332221       57899999999992          35555


Q ss_pred             HHHHHHCCCcEEE-------------Ee-ccCC-CCCCcccccCCcc
Q psy11185        119 AKEAAAHGRKVIV-------------LD-YVIP-SPQGTTWGLGGTC  150 (312)
Q Consensus       119 a~~~~~~~~~~~~-------------ve-~~~~-~~~~~v~a~Gd~~  150 (312)
                      |.   +.+.+++.             ++ +.++ ...|+.|.+|-+.
T Consensus       182 a~---~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~l  225 (253)
T d2gqfa1         182 AE---QFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVL  225 (253)
T ss_dssp             HH---HTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGB
T ss_pred             HH---hccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEE
Confidence            54   34554421             12 1222 2469999999644

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=2.3e-05  Score=57.14  Aligned_cols=31  Identities=19%  Similarity=-0.020  Sum_probs=29.4

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +.+|.|+|||||.||++.|.+|+..+++|||
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~l   62 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYI   62 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEE
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCCcEEE
Confidence            5788999999999999999999999999997

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=7.3e-05  Score=59.26  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=78.2

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCcc--------------------------------------ch------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRG--------------------------------------FD------------   49 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~--------------------------------------~~------------   49 (312)
                      ..|+++|..++++|.+|+|||++.+- +                                      ++            
T Consensus        12 ~aG~~aA~~a~~~G~kV~iiE~~~~G-Gtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v   90 (217)
T d1gesa1          12 SGGIASINRAAMYGQKCALIEAKELG-GTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYI   90 (217)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEESSCTT-HHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeccCcC-CeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHHHHHHHHH
Confidence            47999999999999999999985421 0                                      00            


Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------chHHHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------GGLAAA  119 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------~gl~~a  119 (312)
                      ..+...+...+++.||++.........   . .  .+. .++        ..+.++.+++++|.          .++.+.
T Consensus        91 ~~~~~~~~~~l~~~gV~v~~~~~~~~~---~-~--~~~-~~~--------~~~~~~~~iiatG~~p~ip~ip~~~~l~l~  155 (217)
T d1gesa1          91 DRIHTSYENVLGKNNVDVIKGFARFVD---A-K--TLE-VNG--------ETITADHILIATGGRPSHPREPANDNINLE  155 (217)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEE---T-T--EEE-ETT--------EEEEEEEEEECCCEEECCCEEESCTTSCHH
T ss_pred             HHHHHHHHHHHhCCeEEEEeeecccce---e-e--eec-CCC--------ceeeeeeeeeecCccccCCCCCCcCCcccc
Confidence            112223334456667776654322211   0 0  111 121        46788999999993          122222


Q ss_pred             HHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185        120 KEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA  174 (312)
Q Consensus       120 ~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~  174 (312)
                      ........ ..+.+|..++++.+++|++||.....     .+.+.+...+..+...
T Consensus       156 ~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~-----ela~~~~~~G~~v~~~  206 (217)
T d1gesa1         156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV-----ELTPVAVAAGRRLSER  206 (217)
T ss_dssp             HHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC-----CCHHHHHHHHHHHHHH
T ss_pred             cccEEEcCCccEeeCchhccCCCcEEEECCCccHH-----HHHHHHHHHHHHHHHH
Confidence            22222222 35777888999999999999965443     2334455555555443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=3e-05  Score=62.41  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      +-++|+||||+|.+|+.+|..|.+.|.+|+++|++..
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            4589999999999999999999999999999998653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00013  Score=58.20  Aligned_cols=42  Identities=21%  Similarity=0.143  Sum_probs=29.1

Q ss_pred             EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185        129 VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV  175 (312)
Q Consensus       129 ~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~  175 (312)
                      .+.+|..++|+.|+|||+||+....     .+.+.+..++.....+.
T Consensus       184 ~i~vd~~~~T~~~~v~A~GD~~~g~-----~l~~~a~~~G~~aa~~i  225 (233)
T d1v59a1         184 RLVIDDQFNSKFPHIKVVGDVTFGP-----MLAHKAEEEGIAAVEML  225 (233)
T ss_dssp             CBCCCTTSBCSSTTEEECGGGSSSC-----CCHHHHHHHHHHHHHHH
T ss_pred             cEEECCeEecCCCCEEEEcCCcccH-----HHHHHHHHHHHHHHHHH
Confidence            4778889999999999999965432     23444555666555544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=6.3e-05  Score=56.99  Aligned_cols=30  Identities=30%  Similarity=0.578  Sum_probs=25.1

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .++|||+|+.|+.+|..+.+ +.++++++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            58999999999999988864 6688888753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.29  E-value=0.00014  Score=59.12  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.26  E-value=0.00044  Score=56.43  Aligned_cols=33  Identities=36%  Similarity=0.553  Sum_probs=29.6

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      .|++|||+|++|+.+|..|.+.|. +++++|+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999999999999999999996 788999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=0.00011  Score=63.64  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=33.7

Q ss_pred             ccccccEEEEecCcchHHHHHHHHH------CCCcEEEEeccCCC
Q psy11185        100 HKYDYDLLVLGGGSGGLAAAKEAAA------HGRKVIVLDYVIPS  138 (312)
Q Consensus       100 ~~~~~d~vivg~G~~gl~~a~~~~~------~~~~~~~ve~~~~~  138 (312)
                      ++.++|+||||+||+|+++|..|++      .|.+|+++|+....
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            3557999999999999999999986      78899999987543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00011  Score=58.75  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=27.1

Q ss_pred             cEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      .++|||+||+|+.+|..|.+.  +.+++++|+..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            589999999999999998765  55789998754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=0.00016  Score=54.06  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=25.7

Q ss_pred             CCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185        281 KPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI  311 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~  311 (312)
                      ..+++|+|||||+||+|+|.. ++.++++|++
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~v   74 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFL   74 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeE
Confidence            467789999999999988876 5667888876

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00015  Score=59.82  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=31.9

Q ss_pred             ccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~~  137 (312)
                      .++|++|||+|++|+.+|..+++ .|.+++++|+...
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            57999999999999999999876 5999999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.00084  Score=51.73  Aligned_cols=116  Identities=14%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             hhhhhhhHhhhccCC-eEEEEEcc-CCCc---------cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE
Q psy11185         20 DSGLECAGFLNGLGF-NATVMIRS-VPLR---------GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY   88 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~-~vtl~~~~-~~l~---------~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~   88 (312)
                      ++||++|..|+++|+ +|+|+||+ .+..         .....+.......+.+.++.+.....+....        ...
T Consensus        14 paGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~   85 (196)
T d1gtea4          14 PASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE--------ITL   85 (196)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS--------BCH
T ss_pred             HHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce--------eee
Confidence            489999999999998 59999995 4432         1345555555666666777777765553210        111


Q ss_pred             eeccccccCCCccccccEEEEecCc----chHHHHHHHHHCCC----cEEEEeccCCCCCCcccccCCccc
Q psy11185         89 KNVAEVRQDNTHKYDYDLLVLGGGS----GGLAAAKEAAAHGR----KVIVLDYVIPSPQGTTWGLGGTCV  151 (312)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~----~~~~ve~~~~~~~~~v~a~Gd~~~  151 (312)
                      ...        .+..++.++++.|.    ............+.    .........+++.+.+|+.||++.
T Consensus        86 ~~~--------~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vig  148 (196)
T d1gtea4          86 NTL--------KEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG  148 (196)
T ss_dssp             HHH--------HHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGC
T ss_pred             ehh--------hccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccC
Confidence            111        23456777777773    22222211111111    123334456789999999999654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.08  E-value=0.00058  Score=52.15  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=25.6

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDY  134 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~  134 (312)
                      ++||||+|+.|+.+|..+.+.+.++.+++.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            789999999999999999998887655543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.08  E-value=0.0002  Score=58.45  Aligned_cols=128  Identities=12%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             hhhhhhhHhhhccCCeEEEEEccCCCcc------------------------------------------------chHH
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRSVPLRG------------------------------------------------FDQQ   51 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~------------------------------------------------~~~~   51 (312)
                      ..|+.+|..++++|.+|.|+|+..+- +                                                .-..
T Consensus        11 ~aG~~aA~~aa~~G~~V~liE~~~~G-Gtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~   89 (259)
T d1onfa1          11 SGGMAAARRAARHNAKVALVEKSRLG-GTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQR   89 (259)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSSTT-HHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEecCCCC-CeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhhhheeeec
Confidence            36899999999999999999975431 1                                                0022


Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecccc---ccCCCccccccEEEEecCcch---------HHHH
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEV---RQDNTHKYDYDLLVLGGGSGG---------LAAA  119 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~d~vivg~G~~g---------l~~a  119 (312)
                      +.+.+...|++.||+++.+..-  +..  ...+.+....+...   .......+.+|.+||++|...         +.+.
T Consensus        90 ~~~~~~~~l~~~gV~vi~G~a~--f~~--~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~  165 (259)
T d1onfa1          90 LNNIYRQNLSKDKVDLYEGTAS--FLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLE  165 (259)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCC--CC----------------------------CBSSEEECCCCCBCCBCCTTTTSSCT
T ss_pred             cccchhhhcccccceEEeeecc--ccc--ccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccccccc
Confidence            2333456677889999876321  100  00011111100000   000115689999999999422         1211


Q ss_pred             HHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185        120 KEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN  152 (312)
Q Consensus       120 ~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~  152 (312)
                      ..........+.++..+++...++|++||++..
T Consensus       166 ~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~  198 (259)
T d1onfa1         166 KLNVETNNNYIVVDENQRTSVNNIYAVGDCCMV  198 (259)
T ss_dssp             TTTCCBSSSCEEECTTCBCSSSSEEECSTTEEE
T ss_pred             cceeeecccccccccCCceeEeeEEEEEEeeeh
Confidence            111112234577787788899999999996543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0002  Score=59.81  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=30.5

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +|+||||+|++|+.+|..|.+.|.+|+++|+..
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            589999999999999999999999999999754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.01  E-value=0.0013  Score=55.39  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++.+++....+..+..+++++.|++++.. ++...|++.+++.+.+  .....+|.||++.|.
T Consensus       113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w~Vt~~~~~~~~~--~~~~~~d~VI~AtG~  173 (335)
T d2gv8a1         113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWVVTYKGTKAGSP--ISKDIFDAVSICNGH  173 (335)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEEEEEEESSTTCC--EEEEEESEEEECCCS
T ss_pred             HHHHHHHHHHHHHhhhcccCceEEEEEEec-CCEEEEEEEecCCCCe--EEEEEeeEEEEcccc
Confidence            577888888877778889999999999875 4546677776543211  123468999999994

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.82  E-value=0.00042  Score=55.76  Aligned_cols=32  Identities=28%  Similarity=0.556  Sum_probs=29.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      |++|||+|++||.+|..|.+.|. +|+++|+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999996 699999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00043  Score=58.38  Aligned_cols=32  Identities=44%  Similarity=0.628  Sum_probs=30.2

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      |++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            89999999999999999999999999999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.78  E-value=0.00037  Score=59.50  Aligned_cols=35  Identities=31%  Similarity=0.539  Sum_probs=32.5

Q ss_pred             cccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .++||+||||+|++|+.+|..|.+.+.+|+++|..
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            46899999999999999999999999999999974

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.71  E-value=0.00051  Score=56.41  Aligned_cols=33  Identities=30%  Similarity=0.574  Sum_probs=30.5

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      |++|||+|++|+.+|..|.+.|.+|+++|+...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            799999999999999999999999999998643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00058  Score=57.14  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ...++||||+|.+||.+|..|.+.|.+|+++|....
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            456899999999999999999999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.67  E-value=0.0025  Score=52.87  Aligned_cols=85  Identities=13%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             hhhhhhHhhhccCCeEEEEEc-cCCC----------------------cc---------------chHHHHHHHHHHHhc
Q psy11185         21 SGLECAGFLNGLGFNATVMIR-SVPL----------------------RG---------------FDQQMAKLICEEMAE   62 (312)
Q Consensus        21 ig~E~A~~l~~~g~~vtl~~~-~~~l----------------------~~---------------~~~~~~~~~~~~l~~   62 (312)
                      .|+-+|..|.+.|.+|+|+|+ +++-                      +.               --+++.+|+....++
T Consensus        18 sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~   97 (298)
T d1w4xa1          18 SGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADK   97 (298)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHHHHHHHHHHH
Confidence            689999999999999999998 4431                      00               126788999998888


Q ss_pred             cce--EEEeeceeeEEEEcC-CCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         63 GGV--HFLHKCLPLSVTKLA-DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        63 ~gi--~~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .++  .|+++++|++++-+. .+.-.|...++        ....+|.+|++.|.
T Consensus        98 ~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~--------~~~~~~~~i~atG~  143 (298)
T d1w4xa1          98 FDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--------DRIRARYLIMASGQ  143 (298)
T ss_dssp             TTGGGGEECSCCEEEEEEETTTTEEEEEETTC--------CEEEEEEEEECCCS
T ss_pred             cCCcccccCCcEEEEEEEecCCCceeeccccc--------cccccceEEEeecc
Confidence            888  589999999987533 34346666554        56789999999994

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.53  E-value=0.00083  Score=55.20  Aligned_cols=32  Identities=38%  Similarity=0.497  Sum_probs=29.8

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            58999999999999999999999999999754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.38  E-value=0.00092  Score=55.76  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      -+.+++|||+|++|+.+|..|.+.|.+|+++|+...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            356899999999999999999999999999997643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.38  E-value=0.0018  Score=51.88  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      +.++||||+|.+|+++|..|.+.|.+|+++|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4589999999999999999999999999999754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.30  E-value=0.0016  Score=51.55  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=26.7

Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ...+|+|+|||+|.||++++.++...++++++
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~   60 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV   60 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccc
Confidence            46788999999999999999998777666543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.27  E-value=0.0014  Score=55.18  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             cccccEEEEecCcchHHHHHHHH-----HCCCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAA-----AHGRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~-----~~~~~~~~ve~~~  136 (312)
                      +-.||++|||+|++|+.+|..|.     +.|.+++++|+..
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            34699999999999999999985     4688999999754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.14  E-value=0.0024  Score=48.96  Aligned_cols=35  Identities=20%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~  136 (312)
                      ....++|||+|++|+.+|..|.+.|. +++++|+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            45689999999999999999999998 589999753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.03  E-value=0.0023  Score=53.47  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP  137 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~  137 (312)
                      ..++|||+|++|+.+|..|.+.|.+|+++|+...
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            3689999999999999999999999999997653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=95.86  E-value=0.018  Score=47.72  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecC
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                      .+.+.+.+.+.++|++++++++++++..+.++++ .+...+..+..    ..+.++.||+++|
T Consensus       153 ~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~----~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         153 HVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGY----YVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEE----EEEECSEEEECCC
T ss_pred             HHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccE----EEEeCCeEEEcCC
Confidence            4456666777788999999999999887666543 45555432211    3578999999988

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=95.86  E-value=0.045  Score=43.00  Aligned_cols=102  Identities=14%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc--CCC------------cc-c----------hHHHHHHHHHHHh-ccceEEEeecee
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS--VPL------------RG-F----------DQQMAKLICEEMA-EGGVHFLHKCLP   73 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~--~~l------------~~-~----------~~~~~~~~~~~l~-~~gi~~~~~~~v   73 (312)
                      ..|+|+|.+++++|.+|.||+.+  .+.            +. +          ....+....+.+. ..++.++... |
T Consensus        12 ~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL~i~q~~-V   90 (230)
T d2cula1          12 FSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLFQAT-A   90 (230)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEEEEECC-E
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCHHHHhcc-c
Confidence            36999999999999999999863  221            11 0          0123333444443 3588887554 5


Q ss_pred             eEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc---------------------chHHHHHHHHHCCCcEE
Q psy11185         74 LSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS---------------------GGLAAAKEAAAHGRKVI  130 (312)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~---------------------~gl~~a~~~~~~~~~~~  130 (312)
                      ..+...++....|.+.++        ..+.++.||+++|.                     +...++..|.+.|.++.
T Consensus        91 ~dli~e~~~v~gV~t~~G--------~~~~AkaVILtTGTFL~G~ihiG~~~~~~GR~ge~~s~~Ls~~L~~lGf~~~  160 (230)
T d2cula1          91 TGLLLEGNRVVGVRTWEG--------PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  160 (230)
T ss_dssp             EEEEEETTEEEEEEETTS--------CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             eeeEecccceeeEEeccc--------cEEEEeEEEEccCcceeeEEEEEeeeeeccccCCchhhhHHHHHHhcCCcee
Confidence            555543333345666655        57899999999993                     44678888888887653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.70  E-value=0.027  Score=46.22  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecC
Q psy11185         52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGG  112 (312)
Q Consensus        52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G  112 (312)
                      +...+.+.+.+.|+++++++.++++..+.++.+ .+.+.+..+..    ..+.++.||+++|
T Consensus       147 ~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~----~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         147 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGY----YWVKADAVILATG  204 (308)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEE----EEEECSEEEECCC
T ss_pred             HHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccce----eEeecCeEEEccC
Confidence            344445556678999999999999877665544 45555432211    3578999999988

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.67  E-value=0.0032  Score=53.62  Aligned_cols=33  Identities=36%  Similarity=0.765  Sum_probs=30.8

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +||+||||+|.+|..+|..|.+.+.+|+++|..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            589999999999999999999999999999965

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.55  E-value=0.005  Score=52.36  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      ++|+||||+|++|+.+|..|.+.|.+|+++|..
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999999999999999999999999964

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.54  E-value=0.0055  Score=48.63  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=28.4

Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ...+++|+|||||++|+.+|..|+..+.+|+|
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l   77 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHL   77 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceee
Confidence            35678999999999999999999998888876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.32  E-value=0.0075  Score=51.10  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      +|+||||+|++|+.+|..|.+.|.+|+++|..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            59999999999999999999999999999975

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.26  E-value=0.01  Score=46.85  Aligned_cols=24  Identities=8%  Similarity=0.023  Sum_probs=20.6

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhhc
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSNS  304 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~~  304 (312)
                      ..+++|+|||+|++|+++|..+..
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHS
T ss_pred             ccCceEEEECCchhHHHHHHHHhc
Confidence            357899999999999998888765

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0059  Score=50.71  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             cccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185        101 KYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI  136 (312)
Q Consensus       101 ~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~  136 (312)
                      ..++|++|||+||+|+.+|..+.++  +.+++++|+..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            3478999999999999999999854  78999999854

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.00  E-value=0.025  Score=45.02  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             hhhhhhhHhhhccCCeEEEEEc-cCCCcc------chH------------------------------------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIR-SVPLRG------FDQ------------------------------------------   50 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~------~~~------------------------------------------   50 (312)
                      ..|+-+|..|++.|++|+|+|| +..++.      +.+                                          
T Consensus        14 ~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (265)
T d2voua1          14 ISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWR   93 (265)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCceecccccccc
Confidence            3689999999999999999998 343211      000                                          


Q ss_pred             --HHHHHHHHHH-hccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185         51 --QMAKLICEEM-AEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL  116 (312)
Q Consensus        51 --~~~~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl  116 (312)
                        .....+...+ ...++.+++++.++++....++ +.+.+.+|        .++.+|.+|.+-|....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v~v~~~dG--------~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          94 FTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDG--------TKAEANWVIGADGGASV  153 (265)
T ss_dssp             EEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTS--------CEEEESEEEECCCTTCH
T ss_pred             cchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc-eEEEECCC--------CEEEEEEEecccccccc
Confidence              0011111111 2245677888888888765443 67777666        57889999999996443

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.92  E-value=0.009  Score=51.36  Aligned_cols=34  Identities=32%  Similarity=0.577  Sum_probs=30.5

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      .||+||||+|.+|+.+|..|.+.+ .+|+++|...
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            599999999999999999999877 4899999764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.92  E-value=0.017  Score=46.67  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA  117 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~  117 (312)
                      ..+...+.+.+++.|++++.+++|++++..+++ +.|...++         ++.+|.||+++|.-.-.
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~V~t~~g---------~i~a~~VViAaG~~s~~  207 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG---------SYTADKLIVSMGAWNSK  207 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE---------EEEEEEEEECCGGGHHH
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCE-EEEEECCc---------EEEcCEEEECCCCcchh
Confidence            567778888889999999999999999875544 55555433         57899999999974433

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.89  E-value=0.015  Score=45.45  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=19.2

Q ss_pred             CCCCeEEEEcCchhhHHHHHHhh
Q psy11185        281 KPPGKTLVVGAGYIGKLETWDSN  303 (312)
Q Consensus       281 ~~~~~v~VvG~G~sa~~~a~~l~  303 (312)
                      ..+++|+|||+|++|+++|..+.
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccCceEEEECCCchhHhhhhhhc
Confidence            35688999999999998887653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.01  Score=39.70  Aligned_cols=32  Identities=9%  Similarity=-0.016  Sum_probs=27.5

Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ...+|+|+|+|-|-||+-+|.+|...+.+|++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~   33 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRV   33 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEE
Confidence            35678899999999999888888888888876

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.87  E-value=0.017  Score=41.86  Aligned_cols=80  Identities=11%  Similarity=0.049  Sum_probs=53.2

Q ss_pred             hhhhhhHhhhccCC--eEEEEEcc---CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185         21 SGLECAGFLNGLGF--NATVMIRS---VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR   95 (312)
Q Consensus        21 ig~E~A~~l~~~g~--~vtl~~~~---~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~   95 (312)
                      ++.-++..|++.|.  +|.|+.-.   ...+.+.+.+.+.+.+.+++.||+++.+.....++.+... ..+.+.+|    
T Consensus        54 ~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~-~~~~~~~G----  128 (141)
T d1fcda2          54 RASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGE-MMVETAFG----  128 (141)
T ss_dssp             HHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETT-TEEEETTC----
T ss_pred             HHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCc-EEEEeCCC----
Confidence            55666677777774  67777752   2334455777888888899999999988653333322222 25666555    


Q ss_pred             cCCCccccccEEEE
Q psy11185         96 QDNTHKYDYDLLVL  109 (312)
Q Consensus        96 ~~~~~~~~~d~viv  109 (312)
                          +++++|++++
T Consensus       129 ----e~v~yD~l~v  138 (141)
T d1fcda2         129 ----DEFKADVINL  138 (141)
T ss_dssp             ----CEEECSEEEE
T ss_pred             ----cEEeeeEEEe
Confidence                5789999876

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.85  E-value=0.034  Score=46.07  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc--------------h
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG--------------G  115 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~--------------g  115 (312)
                      ..+...+.+..++.||+++.++.+.++..+.+....+...+..+++.   ..+.++.||+++|-.              |
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~---~~i~Ak~VvlATGG~~~~~~~t~~~~~~tG  234 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDI---IAYVAKGTLIATGGYGRIYKNTTNAVVCEG  234 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCE---EEEECSEEEECCCCCGGGSSSBSSCTTCSC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcE---EEEecCeEEEeccccccccccccccccccc
Confidence            56667777888889999999999998876544333444544322211   457889999988731              2


Q ss_pred             HHHHHHHHHCC------CcEEEEeccCCCCCCcccccCCcc
Q psy11185        116 LAAAKEAAAHG------RKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       116 l~~a~~~~~~~------~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      ...+..+ +.|      ...+.++...+++.+++|++|+..
T Consensus       235 dg~~~~~-~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~  274 (336)
T d2bs2a2         235 TGTAIAL-ETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAA  274 (336)
T ss_dssp             HHHHHHH-TTSSSCEECCCEEECCTTSBCSSBTEEECGGGE
T ss_pred             hhhhhhh-hhhhhhhccccceeechhhcccCCcceeccccc
Confidence            2222222 222      346888888899999999999853

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=94.78  E-value=0.0077  Score=50.98  Aligned_cols=33  Identities=33%  Similarity=0.594  Sum_probs=29.2

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .||+||||+|++|+.+|..|.+. .+|+++|...
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            58999999999999999999875 7899999753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.67  E-value=0.0053  Score=48.49  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=53.6

Q ss_pred             hhhhhhhHhhhccC-------CeEEEEEcc-CCC--------c--cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC
Q psy11185         20 DSGLECAGFLNGLG-------FNATVMIRS-VPL--------R--GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD   81 (312)
Q Consensus        20 ~ig~E~A~~l~~~g-------~~vtl~~~~-~~l--------~--~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~   81 (312)
                      ..|+.+|..|++.|       ++|||+|+. .+-        +  ...+.+.+...+.+.+.|+++++|+.+....    
T Consensus        12 paGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~----   87 (239)
T d1lqta2          12 PSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHV----   87 (239)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCCBTTTB----
T ss_pred             HHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEEecccc----
Confidence            47999999999988       489999994 432        1  1345666777788899999999997664211    


Q ss_pred             CeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         82 GKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                           .+.+         ....+|.++++.|.
T Consensus        88 -----~~~~---------~~~~~~~v~~atGa  105 (239)
T d1lqta2          88 -----QPGE---------LSERYDAVIYAVGA  105 (239)
T ss_dssp             -----CHHH---------HHHHSSEEEECCCC
T ss_pred             -----chhh---------hhccccceeeecCC
Confidence                 1100         22468999999994

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.65  E-value=0.018  Score=45.44  Aligned_cols=71  Identities=23%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             ccccccEEEEecCc----c--------hHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHH
Q psy11185        100 HKYDYDLLVLGGGS----G--------GLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL  166 (312)
Q Consensus       100 ~~~~~d~vivg~G~----~--------gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~  166 (312)
                      +.+++|.++++.|.    .        .+.+.....+.+.+ .+.+|.+++|+.|+|||+||++...     .+.+.+..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~-----~~~~~A~~  222 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV-----MLTPVAIN  222 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-----CCHHHHHH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCc-----cchhhHHH
Confidence            45788999999993    1        11111112333333 4888999999999999999964332     34455677


Q ss_pred             HHHHHHHHH
Q psy11185        167 LGEAIKDAV  175 (312)
Q Consensus       167 ~~~~~~~~~  175 (312)
                      +++.+..+.
T Consensus       223 eg~~aa~~~  231 (240)
T d1feca1         223 EGAAFVDTV  231 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766655

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=94.52  E-value=0.012  Score=50.45  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             cccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI  136 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~  136 (312)
                      .||+||||+|.+|+.+|..|.+.+ .+|+++|...
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            589999999999999999998765 5899999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.51  E-value=0.034  Score=45.39  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      ...+...+.+.+++.|++++.+++|++++..++....|...+         .++++|.||+++|.-.-.++
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~---------g~i~a~~VV~aaG~~s~~l~  208 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTAD---------GVIPADIVVSCAGFWGAKIG  208 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT---------EEEECSEEEECCGGGHHHHH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccc---------eeEECCEEEEecchhHHHHH
Confidence            456777778888899999999999999987544322344322         36899999999997544443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.38  E-value=0.027  Score=45.25  Aligned_cols=61  Identities=11%  Similarity=0.018  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185         49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA  119 (312)
Q Consensus        49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a  119 (312)
                      ...+...+.+.+++.|++++.+++|++++.+++. ..|...+         .++.+|.||+++|.-.-.++
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~---------g~i~a~~vV~AaG~~s~~l~  210 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPS---------GDVWANHVVVASGVWSGMFF  210 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSS-EEEEETT---------EEEEEEEEEECCGGGTHHHH
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEeecce-EEEecCC---------eEEEcCEEEECCCccHHHHH
Confidence            3456667777888999999999999999865443 4555533         36789999999997444443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.14  E-value=0.021  Score=39.62  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      +..+++|+|||+|.+|..-+..|...+.+|++
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v   40 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTV   40 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            44678999999999999777776655557775

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.81  E-value=0.16  Score=39.64  Aligned_cols=52  Identities=13%  Similarity=0.106  Sum_probs=31.5

Q ss_pred             ccceEEEeeceeeEEEEcCCC-ee-EEEEee----cc--ccc---cCCCccccccEEEEecCc
Q psy11185         62 EGGVHFLHKCLPLSVTKLADG-KL-KVQYKN----VA--EVR---QDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        62 ~~gi~~~~~~~v~~~~~~~~~-~~-~v~~~~----~~--~~~---~~~~~~~~~d~vivg~G~  113 (312)
                      .+++.+.+...+.++..+.++ .+ .+.+..    ++  ..+   .+...++++|+||.+.|.
T Consensus       163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            357899999999999875543 33 233321    10  000   111256899999999884

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.04  E-value=0.058  Score=42.06  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             hhhhhhhHhhhc--cCCeEEEEEcc-CCC----------ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEE
Q psy11185         20 DSGLECAGFLNG--LGFNATVMIRS-VPL----------RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKV   86 (312)
Q Consensus        20 ~ig~E~A~~l~~--~g~~vtl~~~~-~~l----------~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v   86 (312)
                      ..|+.+|..|++  .|++|||+|+. .+.          ......+..+....+++.|++++.++.+..      +   +
T Consensus        11 paGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~---~   81 (230)
T d1cjca2          11 PAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR------D---V   81 (230)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT------T---B
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc------c---c
Confidence            579999999966  47899999994 542          123456667777888899999998876632      1   1


Q ss_pred             EEeeccccccCCCccccccEEEEecCc
Q psy11185         87 QYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+..         ..-++|.++++.|.
T Consensus        82 ~~~~---------l~~~~d~v~~a~Ga   99 (230)
T d1cjca2          82 TVQE---------LQDAYHAVVLSYGA   99 (230)
T ss_dssp             CHHH---------HHHHSSEEEECCCC
T ss_pred             cHHH---------HHhhhceEEEEeec
Confidence            1100         12258999999995

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.077  Score=41.15  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCC-CeeEEEEeeccccccCCCccccccEEEEe
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD-GKLKVQYKNVAEVRQDNTHKYDYDLLVLG  110 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~vivg  110 (312)
                      ..+.+.+.+.+++.|++|++|+.|++|..+.+ +.+..+..++        +++.+|.||..
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g--------~~~~ad~VI~~  289 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKL--------GTFKAPLVIAD  289 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETT--------EEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCC--------EEEECCEEEEC
Confidence            34667788888999999999999999976443 4444444555        57899998864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.50  E-value=0.17  Score=40.60  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             hhhhhhhHhhhccCCeEEEEEcc-CCC--c--------------------------------c-----------------
Q psy11185         20 DSGLECAGFLNGLGFNATVMIRS-VPL--R--------------------------------G-----------------   47 (312)
Q Consensus        20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l--~--------------------------------~-----------------   47 (312)
                      ..|+-+|..|++.|.+|+|+|++ ...  +                                .                 
T Consensus        12 p~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (292)
T d1k0ia1          12 PSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRL   91 (292)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEEEEECHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccccccccccc
Confidence            47899999999999999999983 210  0                                0                 


Q ss_pred             ---------chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         48 ---------FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        48 ---------~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                               .-..+.+.+.+.+++.+..+..+...........+.+.+.+.++..     ..++.+|.||.+-|.
T Consensus        92 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~-----~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          92 SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGE-----RLRLDCDYIAGCDGF  161 (292)
T ss_dssp             HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTE-----EEEEECSEEEECCCT
T ss_pred             cccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCc-----EEEEEeCEEEECCCC
Confidence                     0144666667777776666666655554444334445666654321     135789999998885

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.28  E-value=0.089  Score=42.90  Aligned_cols=49  Identities=10%  Similarity=0.138  Sum_probs=35.0

Q ss_pred             HhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         60 MAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        60 l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +++.|+++++++.|++++.++++ +.+.+....+    ....+++|.||+++++
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~-v~v~~~~~~~----~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQK-VTVVYETLSK----ETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSC-EEEEEECSSS----CCCEEEESEEEECSCH
T ss_pred             HHhcCCccccCceEEEEEEeCCe-EEEEEEecCC----CeEEEEeeEEEecCCH
Confidence            45678999999999999876544 5555543211    1256889999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.16  E-value=0.055  Score=42.17  Aligned_cols=45  Identities=18%  Similarity=0.184  Sum_probs=33.6

Q ss_pred             cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcC
Q psy11185        128 KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYG  178 (312)
Q Consensus       128 ~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  178 (312)
                      ..+.+|++++|+.|+|||+||+... +    .+.+.+..+++.+.++. |+
T Consensus       188 G~I~vde~~~T~~~~iyAvGDv~~~-~----~l~~~A~~eg~~aa~~i-~g  232 (238)
T d1aoga1         188 GGVQVDEYSRTNVSNIYAIGDVTNR-V----MLTPVAINEAAALVDTV-FG  232 (238)
T ss_dssp             TEECCCTTCBCSSTTEEECGGGGTS-C----CCHHHHHHHHHHHHHHH-HS
T ss_pred             CeEEecCCeeeccCCEEEEEEecCC-c----cchhhHHHHHHHHHHHH-cC
Confidence            3588999999999999999995433 2    34556777777777765 44

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.09  E-value=0.073  Score=42.66  Aligned_cols=51  Identities=10%  Similarity=-0.012  Sum_probs=34.9

Q ss_pred             HHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         57 CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        57 ~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      .+..++.|++|++++.|++|+.++++ +.+++.++...     .++++|.||++.++
T Consensus       226 ~~l~~~~g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~-----~~~~ad~VV~a~p~  276 (347)
T d2ivda1         226 DALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRR-----AELSVAQVVLAAPA  276 (347)
T ss_dssp             HHHHHHHGGGEESSEEEEEEECC--C-CEEEEEETTEE-----EEEECSEEEECSCH
T ss_pred             HHHHHHhhcccccCCEEEEEEEeCCe-EEEEEEcCCeE-----EEEECCEEEECCCH
Confidence            33344458899999999999865444 55666544221     46789999999985

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.35  Score=39.44  Aligned_cols=97  Identities=11%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------------c
Q psy11185         51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS----------------G  114 (312)
Q Consensus        51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~----------------~  114 (312)
                      .+...+.+..+..+|+++.++.+.++..+++....+...+..+++.   ..+.++.||+++|-                .
T Consensus       136 ~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~---~~~~AkaVILATGG~g~~y~~ttn~~~~tGD  212 (311)
T d1kf6a2         136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL---VQIRANAVVMATGGAGRVYRYNTNGGIVTGD  212 (311)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEE---EEEECSCEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred             HHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcE---EEEECCEEEEcCCCccccccccCCCCCcCcH
Confidence            4444556667777999999999999876543333444444322211   35678989998882                1


Q ss_pred             hHHHHHHHHH--CCCcEEEEeccCCCCCCcccccCCcc
Q psy11185        115 GLAAAKEAAA--HGRKVIVLDYVIPSPQGTTWGLGGTC  150 (312)
Q Consensus       115 gl~~a~~~~~--~~~~~~~ve~~~~~~~~~v~a~Gd~~  150 (312)
                      |+.+|..+-.  .+...+.+++...+..++.|+.++..
T Consensus       213 G~~mA~~aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~  250 (311)
T d1kf6a2         213 GMGMALSHGVPLRDMGGIETDQNCETRIKGLFAVGECS  250 (311)
T ss_dssp             HHHHHHTTTCCEESCCEEECCTTSBCSSBTEEECGGGE
T ss_pred             HHHHHHhcccceeecccccccccchhcccCCCcCccee
Confidence            3333322110  12235666666677888999988753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.13  Score=33.84  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      ..++|+|.|.+|+++|..|.+.+.++++.|...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            368999999999999999999999999988643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.80  E-value=0.1  Score=41.92  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             eEEEEcCchhhHHHHHHhhc-Cceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNS-GCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~-~~~~V~~  311 (312)
                      .|+|||+|++|+.+|..|+. .+.+|+|
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~v   62 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAI   62 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEE
Confidence            49999999999999999865 4668775

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.3  Score=39.56  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             HHHHHhccceEEEeeceeeEEEEcCCC-------eeEEEEeeccccccCCCccccccEEEEecCc---------------
Q psy11185         56 ICEEMAEGGVHFLHKCLPLSVTKLADG-------KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS---------------  113 (312)
Q Consensus        56 ~~~~l~~~gi~~~~~~~v~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~---------------  113 (312)
                      +.+.+++.+++++.++.+..+..+.+.       ...+...+...+..   ..+.++.||+++|-               
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~---~~~~ak~VilAtGG~~~~~~~~t~~~~~T  220 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETV---ETCHAKAVVLATGGASKVYQYTTNPDISS  220 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEE---EEEECSEEEECCCCCGGGSSSBSCGGGCS
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcE---EEEeecceEEeeeccccceeccCCCCcee
Confidence            345667789999999999888754321       23444433322211   45678889998883               


Q ss_pred             -chHHHHHHH-HH-CCCcEEEEeccCCCCCCcccccCCc
Q psy11185        114 -GGLAAAKEA-AA-HGRKVIVLDYVIPSPQGTTWGLGGT  149 (312)
Q Consensus       114 -~gl~~a~~~-~~-~~~~~~~ve~~~~~~~~~v~a~Gd~  149 (312)
                       .|+.+|..+ .+ .+...+.++...+++.|++|++|+.
T Consensus       221 GDG~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~  259 (305)
T d1chua2         221 GDGIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEV  259 (305)
T ss_dssp             CHHHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGG
T ss_pred             cccEeeccccceeeEecceeEECCcccCCCCCceecccE
Confidence             233333221 11 1234678888889999999999985

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.48  E-value=3.2  Score=31.17  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=25.0

Q ss_pred             cccEEEEecCcchHHHHHHHHHCCCcEEEEe
Q psy11185        103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD  133 (312)
Q Consensus       103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve  133 (312)
                      ..+++|||+|.+|..++..+...+....++-
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            4579999999999999999988777655443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.48  E-value=0.91  Score=29.84  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=29.8

Q ss_pred             hhhhh-hHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeec
Q psy11185         21 SGLEC-AGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKC   71 (312)
Q Consensus        21 ig~E~-A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~   71 (312)
                      +||-. |.+|.+.|++|+--++.     ..+.     .+.|.+.|+++..+.
T Consensus        19 ~GMs~LA~~L~~~G~~VsGSD~~-----~~~~-----~~~L~~~Gi~v~~g~   60 (96)
T d1p3da1          19 AGMSGIAEILLNEGYQISGSDIA-----DGVV-----TQRLAQAGAKIYIGH   60 (96)
T ss_dssp             TTHHHHHHHHHHHTCEEEEEESC-----CSHH-----HHHHHHTTCEEEESC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCC-----CChh-----hhHHHHCCCeEEECC
Confidence            56666 99999999999999863     1222     455667899887553

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.94  E-value=0.91  Score=35.44  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=34.2

Q ss_pred             cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185         63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG  115 (312)
Q Consensus        63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g  115 (312)
                      .++.+..+++++.++... +.+.+.+.++...    ..++.+|++|.+-|...
T Consensus       119 ~~~~~~~~~~v~~~~~~~-~~v~v~~~~g~~~----~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         119 GQQAVRTGLGVERIEERD-GRVLIGARDGHGK----PQALGADVLVGADGIHS  166 (288)
T ss_dssp             CTTSEEESEEEEEEEEET-TEEEEEEEETTSC----EEEEEESEEEECCCTTC
T ss_pred             cCeeeecCcEEEEeeecC-CcEEEEEEcCCCC----eEEEeeceeeccCCccc
Confidence            467888888888887644 4467777776421    14688999999999644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.79  E-value=0.19  Score=37.02  Aligned_cols=32  Identities=25%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+|+|..|..+|..|.+.|.+++++|.+.
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            57999999999999999999999999999643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.60  E-value=0.26  Score=31.33  Aligned_cols=28  Identities=18%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        284 GKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      |+|.|+|||+.|...+.+....+-++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~v   29 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWP   29 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEE
Confidence            5799999999999877776666656543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.06  E-value=0.041  Score=43.00  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEE
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVI  130 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~  130 (312)
                      .++|||+|..|+++|..|.+.+.+++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            37999999999999999998876543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.64  E-value=0.3  Score=34.26  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      .++|+|+|+.|..++..|.+.|.+++++|...
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            37899999999999999999999999998743

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.12  E-value=0.27  Score=34.46  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .++|+|.|..|..++..|.+.|.+++++|..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            4799999999999999999999999999865

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.97  E-value=0.63  Score=37.78  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185         50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      +.+...+.+.+++.|+++++++.++++..+.++.+ .+...+..+.    ...+.++.||+++|-
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~----~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTG----YYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTE----EEEEEEEEEEECCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccce----EEEEeccceEEeccc
Confidence            45777888888999999999999999876556544 4555443211    135789999999994

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.68  E-value=1.7  Score=28.06  Aligned_cols=40  Identities=10%  Similarity=-0.020  Sum_probs=29.0

Q ss_pred             hhh-hhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEee
Q psy11185         21 SGL-ECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHK   70 (312)
Q Consensus        21 ig~-E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~   70 (312)
                      +|| -+|.+|.+.|++|+--++..     .+.     .+.|++.||++..+
T Consensus        12 ~GMs~LA~~L~~~G~~VsGSD~~~-----~~~-----t~~L~~~Gi~i~~g   52 (89)
T d1j6ua1          12 IGMSAVALHEFSNGNDVYGSNIEE-----TER-----TAYLRKLGIPIFVP   52 (89)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSC-----CHH-----HHHHHHTTCCEESS
T ss_pred             HHHHHHHHHHHhCCCeEEEEeCCC-----Chh-----HHHHHHCCCeEEee
Confidence            445 35999999999999988631     222     44588899998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.41  E-value=0.45  Score=34.95  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.6

Q ss_pred             CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      .|-+|+|+|+|..|..++..+...+..|++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~   60 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQI   60 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEE
Confidence            467899999999999888887777778875

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.09  E-value=0.4  Score=41.72  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      -++|+||+|+|..-.-+|..+.+.|.+|+.+|++.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~   39 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRS   39 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCC
Confidence            37899999999877777777999999999999753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.69  E-value=0.55  Score=35.00  Aligned_cols=35  Identities=31%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI  136 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~  136 (312)
                      -++.++|+|+|.+|+.++..+...|-.+.++|...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            36899999999999999999999999999998643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.5  Score=38.39  Aligned_cols=48  Identities=10%  Similarity=0.013  Sum_probs=36.8

Q ss_pred             HHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185         57 CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS  113 (312)
Q Consensus        57 ~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~  113 (312)
                      ...+++.|+++++++.+.++..++++ +.|++.++        .++++|.||++..+
T Consensus       214 ~~l~~~~g~~i~~~~~v~~I~~~~~~-v~v~~~~g--------~~~~ad~vI~a~p~  261 (383)
T d2v5za1         214 ERIMDLLGDRVKLERPVIYIDQTREN-VLVETLNH--------EMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHGGGEEESCCEEEEECSSSS-EEEEETTS--------CEEEESEEEECSCG
T ss_pred             HHHHHHcCCeEEecCcceEEEecCCe-EEEEECCC--------CEEECCEEEECCCH
Confidence            33445678999999999999865544 66777666        56789999999875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.48  E-value=0.33  Score=40.96  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             eEEEEcCchhhHHHHHHhhc------Cceeeee
Q psy11185        285 KTLVVGAGYIGKLETWDSNS------GCGNVTI  311 (312)
Q Consensus       285 ~v~VvG~G~sa~~~a~~l~~------~~~~V~~  311 (312)
                      -|+|||||++|.-+|..|+.      .+-+|.|
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~Vll   66 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCL   66 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEE
Confidence            48999999999999888875      4446654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.41  E-value=0.28  Score=39.95  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             CCeEEEEcCchhhHHHHHHhhcC--ceeeee
Q psy11185        283 PGKTLVVGAGYIGKLETWDSNSG--CGNVTI  311 (312)
Q Consensus       283 ~~~v~VvG~G~sa~~~a~~l~~~--~~~V~~  311 (312)
                      ...|+|||+|++|+.+|..|+..  +.+|+|
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~   80 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCI   80 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence            34599999999999999998743  557765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.30  E-value=0.47  Score=34.99  Aligned_cols=31  Identities=39%  Similarity=0.454  Sum_probs=28.1

Q ss_pred             cEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      .+.|+|+|..|+.+|..|.+.|.++.+++..
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999999999999999988863

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.21  E-value=0.75  Score=31.65  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             cEEEEecCc-----------chHHHHHHHHHCCCcEEEEeccCCCCC
Q psy11185        105 DLLVLGGGS-----------GGLAAAKEAAAHGRKVIVLDYVIPSPQ  140 (312)
Q Consensus       105 d~vivg~G~-----------~gl~~a~~~~~~~~~~~~ve~~~~~~~  140 (312)
                      .++|+|+||           ++..+...+.+.|.++++++.+..|-.
T Consensus         6 kvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs   52 (121)
T d1a9xa4           6 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS   52 (121)
T ss_dssp             EEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST
T ss_pred             EEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh
Confidence            689999997           566777778899999999998876543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.04  E-value=0.84  Score=30.96  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             CCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185        283 PGKTLVVGAGYIGKLETWDSNSGCGNVTI  311 (312)
Q Consensus       283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~  311 (312)
                      ..||.|+|||+.|...+.+....+.++.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v   39 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIA   39 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEE
Confidence            34799999999999888887777666643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.40  E-value=0.57  Score=34.40  Aligned_cols=34  Identities=35%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185        102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV  135 (312)
Q Consensus       102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~  135 (312)
                      -++.++|+|+|.+|+.++..+.+.|-.+.++|..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            4789999999999999999999999999999863