Psyllid ID: psy11221

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTGFG
Secondary Structure (PSIPRED)
ccEEEccccccccHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHccccHHHHHHHHcccccccccEEEcccccccccccEEcccEEEccccccccEEEEEEEcccccEEEccEEEccEEHHHcccHHHHHHHHHHHccccccccEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MRIFVISnsseivsplllrssatfsnSEFEAFLAKKWSsekrfglegcEILIPAMKQVIDKSTELGVESVVMgmphrgnlisettgqglqkvprlfsqnpqnngdirhfvffsstptflhtFDWIkasqtqgdrgphltlncwpramflstpvcilhetfrpiftPIIFFFFALSHvqmgsafdidlSISFRVIalrptgfg
Flexible Loop (DISEMBL)
mrifvisnsseivsplLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTGFG
Low Complexity Region (SEG)
MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHEtfrpiftpiiffffALSHVQMGSAFDIDLSISFRVIALRPTGFG
Disordered region (IsUnstruct)
***FVI****EIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLI*********************NGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALR*****
Disordered Region (DISOPRED)
MR*************LLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTG**
Disordered Region (DISEMBL)
MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTGFG
Disordered Region (DISPRO)
*RIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTGF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTGFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
O61199	1029	2-oxoglutarate dehydrogen	yes	N/A	0.410	0.080	0.545	2e-20
Q5R9L8	1010	2-oxoglutarate dehydrogen	yes	N/A	0.504	0.100	0.442	3e-20
Q9ULD0	1010	2-oxoglutarate dehydrogen	no	N/A	0.504	0.100	0.442	4e-20
Q623T0	1027	2-oxoglutarate dehydrogen	N/A	N/A	0.410	0.080	0.534	8e-20
Q68EW0	1018	2-oxoglutarate dehydrogen	N/A	N/A	0.405	0.080	0.477	2e-19
Q5RCB8	1023	2-oxoglutarate dehydrogen	no	N/A	0.272	0.053	0.709	2e-18
Q60HE2	1023	2-oxoglutarate dehydrogen	N/A	N/A	0.272	0.053	0.709	2e-18
Q02218	1023	2-oxoglutarate dehydrogen	no	N/A	0.272	0.053	0.709	2e-18
Q148N0	1023	2-oxoglutarate dehydrogen	no	N/A	0.272	0.053	0.709	2e-18
Q6P6Z8	1021	2-oxoglutarate dehydrogen	N/A	N/A	0.272	0.053	0.690	1e-17

>sp|O61199|ODO1_CAEEL 2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T22B11.5 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 64/88 (72%), Gaps = 5/88 (5%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
           +++FE FLAKKW SEKRFGLEGCE+LIPAMKQVID S+ LGV+S V+GMPHRG  N+++ 
Sbjct: 266 STKFEEFLAKKWPSEKRFGLEGCEVLIPAMKQVIDSSSTLGVDSFVIGMPHRGRLNVLAN 325

Query: 84  TTGQGLQKVPRLFSQ---NPQNNGDIRH 108
              Q L  +   FS      + +GD+++
Sbjct: 326 VCRQPLATILSQFSTLEPADEGSGDVKY 353

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 2

>sp|Q5R9L8|OGDHL_PONAB 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii GN=OGDHL PE=2 SV=2

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 79/113 (69%), Gaps = 11/113 (9%)

Query: 5   VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
           V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct: 230 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 286

Query: 65  LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRHFV 110
           +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++ +
Sbjct: 287 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKYHL 338

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: -

>sp|Q9ULD0|OGDHL_HUMAN 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Homo sapiens GN=OGDHL PE=1 SV=3

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 79/113 (69%), Gaps = 11/113 (9%)

Query: 5   VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
           V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct: 230 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 286

Query: 65  LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRHFV 110
           +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++ +
Sbjct: 287 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKYHL 338

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: -

>sp|Q623T0|ODO1_CAEBR 2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG01737 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 64/88 (72%), Gaps = 5/88 (5%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
           +++FE FLAKKW SEKRFGLEGCE+LIPA+KQVID S+ LGV+S V+GMPHRG  N+++ 
Sbjct: 264 STKFEEFLAKKWPSEKRFGLEGCEVLIPAIKQVIDSSSTLGVDSFVIGMPHRGRLNVLAN 323

Query: 84  TTGQGLQKVPRLFSQ---NPQNNGDIRH 108
              Q L  +   FS      + +GD+++
Sbjct: 324 VCRQPLATILSQFSTLEPADEGSGDVKY 351

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q68EW0|OGDHL_XENLA 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis GN=ogdhl PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 69/90 (76%), Gaps = 8/90 (8%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
           ++ FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E+G+E V++GMPHRG  N+++ 
Sbjct: 256 STRFEDFLARKWSSEKRFGLEGCEVMIPALKAIIDKSSEMGLEYVILGMPHRGRLNVLAN 315

Query: 84  TTGQGLQKV-----PRLFSQNPQNNGDIRH 108
              + L ++     P+L + + + +GD+++
Sbjct: 316 VIRKDLDQIFCQFDPKLEASD-EGSGDVKY 344

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: -

>sp|Q5RCB8|ODO1_PONAB 2-oxoglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=OGDH PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           ++ FE FL +KWSSEKRFGLEGCE+LIPA+K +IDKS+E GV+ V+MGMPHRG L
Sbjct: 261 STRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRL 315

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=OGDH PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           ++ FE FL +KWSSEKRFGLEGCE+LIPA+K +IDKS+E GV+ V+MGMPHRG L
Sbjct: 261 STRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRL 315

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           ++ FE FL +KWSSEKRFGLEGCE+LIPA+K +IDKS+E GV+ V+MGMPHRG L
Sbjct: 261 STRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRL 315

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q148N0|ODO1_BOVIN 2-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=OGDH PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           ++ FE FL +KWSSEKRFGLEGCE+LIPA+K +IDKS+E GV+ V+MGMPHRG L
Sbjct: 261 STRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRL 315

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q6P6Z8|ODO1_XENLA 2-oxoglutarate dehydrogenase, mitochondrial OS=Xenopus laevis GN=ogdh PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 47/55 (85%)

Query: 26  NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           ++ FE FL +KWSSEKRFGLEGCE+LIPA+K +IDKS+  GV+ V+MGMPHRG L
Sbjct: 260 STRFEEFLHRKWSSEKRFGLEGCEVLIPALKTIIDKSSGNGVDYVIMGMPHRGRL 314

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
307178145	925	2-oxoglutarate dehydrogenase E1 componen	0.257	0.056	0.942	9e-22
340720185	1044	PREDICTED: 2-oxoglutarate dehydrogenase,	0.257	0.049	0.942	1e-21
328786455	1072	PREDICTED: 2-oxoglutarate dehydrogenase,	0.257	0.048	0.942	1e-21
380017767	1072	PREDICTED: 2-oxoglutarate dehydrogenase,	0.257	0.048	0.942	1e-21
332017156	1072	2-oxoglutarate dehydrogenase E1 componen	0.257	0.048	0.942	1e-21
322784969	1065	hypothetical protein SINV_11249 [Solenop	0.257	0.048	0.942	1e-21
229892296	1021	oxoglutarate (alpha-ketoglutarate) dehyd	0.257	0.050	0.923	1e-21
307204872	1080	2-oxoglutarate dehydrogenase E1 componen	0.257	0.048	0.942	1e-21
242024794	1023	2-oxoglutarate dehydrogenase, putative [	0.257	0.050	0.923	2e-21
350420108	1066	PREDICTED: 2-oxoglutarate dehydrogenase,	0.257	0.048	0.942	3e-21

>gi|307178145|gb|EFN66953.1| 2-oxoglutarate dehydrogenase E1 component, mitochondrial [Camponotus floridanus]

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 133 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 184

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720185|ref|XP_003398522.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Bombus terrestris]

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 295 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 346

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786455|ref|XP_391838.3| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like isoform 1 [Apis mellifera]

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 280 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 331

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017767|ref|XP_003692817.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Apis florea]

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 280 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 331

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017156|gb|EGI57955.1| 2-oxoglutarate dehydrogenase E1 component, mitochondrial [Acromyrmex echinatior]

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 280 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 331

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784969|gb|EFZ11740.1| hypothetical protein SINV_11249 [Solenopsis invicta]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 274 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 325

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229892296|ref|NP_001153501.1| oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) [Nasonia vitripennis]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/52 (92%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQ+IDKSTELGVES+VMGMPHRG L
Sbjct: 272 FEAFLARKWSSEKRFGLEGCEILIPAMKQIIDKSTELGVESIVMGMPHRGRL 323

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204872|gb|EFN83427.1| 2-oxoglutarate dehydrogenase E1 component, mitochondrial [Harpegnathos saltator]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 273 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 324

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024794|ref|XP_002432811.1| 2-oxoglutarate dehydrogenase, putative [Pediculus humanus corporis] gi|212518320|gb|EEB20073.1| 2-oxoglutarate dehydrogenase, putative [Pediculus humanus corporis]

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/52 (92%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQ+IDKSTELGVES+VMGMPHRG L
Sbjct: 274 FEAFLARKWSSEKRFGLEGCEILIPAMKQIIDKSTELGVESIVMGMPHRGRL 325

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420108|ref|XP_003492401.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Bombus impatiens]

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 51/52 (98%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FEAFLA+KWSSEKRFGLEGCEILIPAMKQVIDKSTELGVES+VMGMPHRG L
Sbjct: 273 FEAFLARKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESIVMGMPHRGRL 324

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
UNIPROTKB|F1MWG1	1010	OGDHL "Uncharacterized protein	0.495	0.099	0.450	7.2e-19
UNIPROTKB|Q9ULD0	1010	OGDHL "2-oxoglutarate dehydrog	0.495	0.099	0.450	7.2e-19
UNIPROTKB|F1SDW6	1016	OGDHL "Uncharacterized protein	0.495	0.098	0.450	7.2e-19
UNIPROTKB|F1PK40	1021	OGDHL "Uncharacterized protein	0.495	0.097	0.450	7.3e-19
WB|WBGene00020679	1029	ogdh-1 [Caenorhabditis elegans	0.410	0.080	0.556	7.4e-19
UNIPROTKB|O61199	1029	T22B11.5 "2-oxoglutarate dehyd	0.410	0.080	0.556	7.4e-19
RGD|1310916	1029	Ogdhl "oxoglutarate dehydrogen	0.391	0.076	0.505	1.5e-18
FB|FBgn0010352	1105	Nc73EF "Neural conserved at 73	0.257	0.047	0.846	1.7e-18
UNIPROTKB|Q623T0	1027	CBG01737 "2-oxoglutarate dehyd	0.410	0.080	0.545	2e-18
UNIPROTKB|E1BTL0	1014	OGDHL "Uncharacterized protein	0.391	0.077	0.505	2.5e-18

UNIPROTKB|F1MWG1 OGDHL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 50/111 (45%), Positives = 78/111 (70%)

Query:     5 VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
             V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct:   230 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 286

Query:    65 LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRH 108
             +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++
Sbjct:   287 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKY 336

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

UNIPROTKB|Q9ULD0 OGDHL "2-oxoglutarate dehydrogenase-like, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 50/111 (45%), Positives = 78/111 (70%)

Query:     5 VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
             V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct:   230 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 286

Query:    65 LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRH 108
             +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++
Sbjct:   287 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKY 336

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SDW6 OGDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 50/111 (45%), Positives = 78/111 (70%)

Query:     5 VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
             V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct:   230 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 286

Query:    65 LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRH 108
             +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++
Sbjct:   287 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKY 336

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

UNIPROTKB|F1PK40 OGDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 50/111 (45%), Positives = 78/111 (70%)

Query:     5 VISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTE 64
             V+  SSE    LL R      +  FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E
Sbjct:   226 VMQFSSEEKRTLLAR---LVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSE 282

Query:    65 LGVESVVMGMPHRG--NLISETTGQGLQKV-----PRLFSQNPQNNGDIRH 108
             +G+E+V++GMPHRG  N+++    + L+++     P+L + + + +GD+++
Sbjct:   283 MGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD-EGSGDVKY 332

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

WB|WBGene00020679 ogdh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 239 (89.2 bits), Expect = 7.4e-19, P = 7.4e-19
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query:    26 NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
             +++FE FLAKKW SEKRFGLEGCE+LIPAMKQVID S+ LGV+S V+GMPHRG  N+++ 
Sbjct:   266 STKFEEFLAKKWPSEKRFGLEGCEVLIPAMKQVIDSSSTLGVDSFVIGMPHRGRLNVLAN 325

Query:    84 TTGQGLQKVPRLFSQ-NP--QNNGDIRH 108
                Q L  +   FS   P  + +GD+++
Sbjct:   326 VCRQPLATILSQFSTLEPADEGSGDVKY 353

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|O61199 T22B11.5 "2-oxoglutarate dehydrogenase, mitochondrial" [Caenorhabditis elegans (taxid:6239)]

 Score = 239 (89.2 bits), Expect = 7.4e-19, P = 7.4e-19
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query:    26 NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
             +++FE FLAKKW SEKRFGLEGCE+LIPAMKQVID S+ LGV+S V+GMPHRG  N+++ 
Sbjct:   266 STKFEEFLAKKWPSEKRFGLEGCEVLIPAMKQVIDSSSTLGVDSFVIGMPHRGRLNVLAN 325

Query:    84 TTGQGLQKVPRLFSQ-NP--QNNGDIRH 108
                Q L  +   FS   P  + +GD+++
Sbjct:   326 VCRQPLATILSQFSTLEPADEGSGDVKY 353

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS

RGD|1310916 Ogdhl "oxoglutarate dehydrogenase-like" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 44/87 (50%), Positives = 69/87 (79%)

Query:    29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
             FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E+GVE+V++GMPHRG  N+++    
Sbjct:   251 FEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGVENVILGMPHRGRLNVLANVIR 310

Query:    87 QGLQKV-----PRLFSQNPQNNGDIRH 108
             + L+++     P+L + + + +GD+++
Sbjct:   311 KDLEQIFCQFDPKLEAAD-EGSGDVKY 336

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

FB|FBgn0010352 Nc73EF "Neural conserved at 73EF" [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/52 (84%), Positives = 50/52 (96%)

Query:    29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
             FEAFLAKK+SSEKRFGLEGCEI+IPA+K++ID STELGVESV+MGMPHRG L
Sbjct:   259 FEAFLAKKYSSEKRFGLEGCEIMIPALKEIIDVSTELGVESVIMGMPHRGRL 310

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS

GO:0009353 "mitochondrial oxoglutarate dehydrogenase complex" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q623T0 CBG01737 "2-oxoglutarate dehydrogenase, mitochondrial" [Caenorhabditis briggsae (taxid:6238)]

 Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 48/88 (54%), Positives = 65/88 (73%)

Query:    26 NSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISE 83
             +++FE FLAKKW SEKRFGLEGCE+LIPA+KQVID S+ LGV+S V+GMPHRG  N+++ 
Sbjct:   264 STKFEEFLAKKWPSEKRFGLEGCEVLIPAIKQVIDSSSTLGVDSFVIGMPHRGRLNVLAN 323

Query:    84 TTGQGLQKVPRLFSQ-NP--QNNGDIRH 108
                Q L  +   FS   P  + +GD+++
Sbjct:   324 VCRQPLATILSQFSTLEPADEGSGDVKY 351

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

UNIPROTKB|E1BTL0 OGDHL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 44/87 (50%), Positives = 68/87 (78%)

Query:    29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
             FE FLA+KWSSEKRFGLEGCE++IPA+K +IDKS+E+G+E V+MGMPHRG  N+++    
Sbjct:   255 FEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIEYVIMGMPHRGRLNVLANVIR 314

Query:    87 QGLQKV-----PRLFSQNPQNNGDIRH 108
             + L+++     P+L + + + +GD+++
Sbjct:   315 KELEQIFCQFDPKLEAAD-EGSGDVKY 340

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O61199	ODO1_CAEEL	1, ., 2, ., 4, ., 2	0.5454	0.4108	0.0806	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
cd02016	265	cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate	1e-24
PRK09404	924	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 co	5e-20
COG0567	906	COG0567, SucA, 2-oxoglutarate dehydrogenase comple	4e-19
TIGR00239	929	TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas	9e-17
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-15

>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

 Score = 96.8 bits (242), Expect = 1e-24
 Identities = 33/52 (63%), Positives = 41/52 (78%)

Query: 29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
          FE FLA K+  +KRFGLEG E LIPA+ ++ID++ ELGVE VV+GM HRG L
Sbjct: 1  FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRL 52

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. Length = 265

>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed

 Score = 86.7 bits (216), Expect = 5e-20
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FE FL  K+  +KRF LEG E LIP + ++I ++ +LGV+ +V+GM HRG L
Sbjct: 204 FERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRL 255

Length = 924

>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

 Score = 84.2 bits (209), Expect = 4e-19
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FE FL  K+   KRF LEG E LIP + ++ID++ + GV+ VV+GM HRG L
Sbjct: 190 FERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRL 241

Length = 906

>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component

 Score = 77.6 bits (191), Expect = 9e-17
 Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 21/135 (15%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
           FE FL  K+   KRF LEG + L+P +K++I  S   G   VV+GM HRG  N++    G
Sbjct: 204 FERFLGAKFPGAKRFSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLG 263

Query: 87  QGLQKVPRLF-----SQNPQNNGDIR-HFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTL 140
           +  + +   F     S  P   GD++ H   FSS  T            T G    HL L
Sbjct: 264 KPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFT------------TDGKL-VHLAL 310

Query: 141 NCWPRAMFLSTPVCI 155
              P  + + +PV I
Sbjct: 311 AFNPSHLEIVSPVVI 325

The 2-oxoglutarate dehydrogenase complex consists of this thiamine pyrophosphate-binding subunit (E1), dihydrolipoamide succinyltransferase (E2), and lipoamide dehydrogenase (E3). The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase [Energy metabolism, TCA cycle]. Length = 929

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 71.8 bits (177), Expect = 9e-15
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FE FL  K+  +KRF LEG E LIP +  V+D++ E G++ VV+GM HRG L
Sbjct: 508 FETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRL 559

Length = 1228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	100.0
KOG0450|consensus	1017		100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
KOG0451|consensus	913		100.0
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	98.11
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	97.18
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	86.04

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.3e-58  Score=454.71  Aligned_cols=153  Identities=33%  Similarity=0.450  Sum_probs=142.4

Q ss_pred             EecCchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeec
Q psy11221          6 ISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETT   85 (202)
Q Consensus         6 ~~~s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~   85 (202)
                      ..+|.|++..+|-|+   +.||+||+||++||||+|||||||||||||+|+++|++|++.|+++|||||||||||||| +
T Consensus       170 ~~~~~e~k~~~l~~L---~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL-~  245 (906)
T COG0567         170 PTFTAEEKKAILKRL---TAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL-V  245 (906)
T ss_pred             CCCCHHHHHHHHHHH---HHHHHHHHHhhccCCCCccccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH-H
Confidence            357889999999999   899999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             ccCCCChhhhccc-CC-----CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE----
Q psy11221         86 GQGLQKVPRLFSQ-NP-----QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI----  155 (202)
Q Consensus        86 NVl~KP~~~IF~E-~~-----~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~----  155 (202)
                      ||||||++.||+| ++     ..+||||||+|+|+++            +|.+| .|||+|++||||||+|||||+    
T Consensus       246 nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~------------~~~~~-~v~l~La~NPSHLE~v~PVV~G~vR  312 (906)
T COG0567         246 NVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDR------------QTDGG-KVHLSLAFNPSHLEIVNPVVEGSVR  312 (906)
T ss_pred             HHhCCCHHHHHHHhCCCCCCCCccccccccccccccc------------ccCCC-eeEEEecCCcchhhhhchhhhcchH
Confidence            9999999999999 44     2599999999999986            56666 899999999999999999999    


Q ss_pred             -----eccCCCCeEEEEEEeccccc
Q psy11221        156 -----LHETFRPIFTPIIFFFFALS  175 (202)
Q Consensus       156 -----~~~~~~~~v~PIlih~~~~~  175 (202)
                           +.++.+++++||++||||--
T Consensus       313 a~Qd~~~d~~~~k~lpiliHGDAAf  337 (906)
T COG0567         313 AKQDRLGDTERDKVLPILIHGDAAF  337 (906)
T ss_pred             hhhhhhccCccceeEEEEEecChhc
Confidence                 56677889999999999864

>KOG0450|consensus

Probab=100.00  E-value=1e-55  Score=428.12  Aligned_cols=151  Identities=37%  Similarity=0.550  Sum_probs=140.8

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..+|.|+   ++++.||+||++||++.|||||||||+|||+|++||+++++.||++|||||||||||||| +||+
T Consensus       247 s~e~k~~il~RL---~~st~FE~FLa~Kw~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL-~NVv  322 (1017)
T KOG0450|consen  247 SHEQKRVILDRL---TRSTRFEEFLATKWPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL-ANVV  322 (1017)
T ss_pred             CHHHHHHHHHHH---HHhhHHHHHHhhhCCccccccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH-HHHH
Confidence            456888999999   999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC-----CCCCCcccCceeecCCccccccccccccccC-CCCceEEEeecCCCcceecCcEEE------
Q psy11221         89 LQKVPRLFSQ-NP-----QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQ-GDRGPHLTLNCWPRAMFLSTPVCI------  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~-----~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~-~g~~vhlsL~~NPSHLEaVnPVv~------  155 (202)
                      +||+++||+| ++     +||||||||||.+.++            .++ +||.|+|+|++||||||||||||+      
T Consensus       323 RKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R------------~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~  390 (1017)
T KOG0450|consen  323 RKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYER------------PNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAE  390 (1017)
T ss_pred             hhHHHHHHHhccCCCCCcCCCCceeeeecccccc------------ccccCCceeEEEEecCchhhcccCceeechHHHH
Confidence            9999999999 32     4999999999998664            554 799999999999999999999999      


Q ss_pred             ---eccCCCCeEEEEEEeccccc
Q psy11221        156 ---LHETFRPIFTPIIFFFFALS  175 (202)
Q Consensus       156 ---~~~~~~~~v~PIlih~~~~~  175 (202)
                         .+|.+++|++.|||||||--
T Consensus       391 q~y~~D~~~~k~m~ILiHGDaaF  413 (1017)
T KOG0450|consen  391 QFYTGDEEGKKVMGILIHGDAAF  413 (1017)
T ss_pred             HHhccccccceeEEEEEecchhh
Confidence               57788999999999999854

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=1.5e-53  Score=423.25  Aligned_cols=150  Identities=28%  Similarity=0.367  Sum_probs=136.7

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      +.|++..+|-|+   +.||.||.|||+||+|||||||||+||+||+||++++.|++.|.++|||||||||||||| +||.
T Consensus       491 ~~~eq~~iL~~L---naaEaFEtFLqtkyvGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL-ani~  566 (1228)
T PRK12270        491 TREEQKRILSKL---NAAEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL-ANIV  566 (1228)
T ss_pred             CHHHHHHHHHHh---hhHHHHHHHHhhhcccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH-HHHh
Confidence            457888999999   889999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC-------CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE-----
Q psy11221         89 LQKVPRLFSQ-NP-------QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI-----  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~-------~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~-----  155 (202)
                      ||||.+||+| ++       .||||||||||++.+.            .+.+|+++.++|++|||||||||||+.     
T Consensus       567 gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~------------~~~~g~~~~v~laaNPSHLEavdpVleGivRa  634 (1228)
T PRK12270        567 GKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTF------------TQMFGDEIKVSLAANPSHLEAVDPVLEGIVRA  634 (1228)
T ss_pred             cCCHHHHHHHhcCCCCccccCcCcceeeeccCceee------------eccCCCeeEEEEecCchhhhhcchHhhhhhhh
Confidence            9999999999 54       2899999999999875            455688899999999999999999998     


Q ss_pred             ----ec-cCCCCeEEEEEEecccc
Q psy11221        156 ----LH-ETFRPIFTPIIFFFFAL  174 (202)
Q Consensus       156 ----~~-~~~~~~v~PIlih~~~~  174 (202)
                          ++ ..++-.|+||+|||||-
T Consensus       635 kQd~l~~g~~~~~vlpi~~hGdaa  658 (1228)
T PRK12270        635 KQDRLDKGEEGFTVLPILLHGDAA  658 (1228)
T ss_pred             hhhhhcccccCCceeEEEEecccc
Confidence                22 11246999999999986

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=1.6e-50  Score=400.06  Aligned_cols=149  Identities=31%  Similarity=0.417  Sum_probs=135.0

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..+|-|+   ++||.||+||++||+|+|||||||||||||+|+++|++|+++||+++|+||||||||||| +||+
T Consensus       187 ~~~~k~~il~~L---~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL-~nv~  262 (929)
T TIGR00239       187 NSEEKKRFLSRL---TAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL-VNVL  262 (929)
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHhCCCCceeecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH-HHHh
Confidence            668888999999   999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC----C---CCCCcccCce-eecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE----
Q psy11221         89 LQKVPRLFSQ-NP----Q---NNGDIRHFVF-FSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI----  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~----~---~sGDVKYHLG-~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~----  155 (202)
                      |||+++||+| .+    .   ++||||||+| +|++.            ++ .|+.+|++|++||||||+|||||+    
T Consensus       263 gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~------------~~-~~~~~~~~l~~npSHLeav~Pva~G~Ar  329 (929)
T TIGR00239       263 GKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDF------------TT-DGKLVHLALAFNPSHLEIVSPVVIGSTR  329 (929)
T ss_pred             CCCHHHHHHHHcCCCCCcccCCCCCcCccCCCccccc------------cc-CCCcceeeecCCCcccccccchhhhHHH
Confidence            9999999999 32    1   6999999999 88775            34 455799999999999999999999    


Q ss_pred             ----e-cc-CCCCeEEEEEEecccc
Q psy11221        156 ----L-HE-TFRPIFTPIIFFFFAL  174 (202)
Q Consensus       156 ----~-~~-~~~~~v~PIlih~~~~  174 (202)
                          . .+ +.+++.+||++|||+-
T Consensus       330 A~q~~~~~~~~~~~~v~v~~~GDgA  354 (929)
T TIGR00239       330 ARLDRLNDSPESTKVLAILIHGDAA  354 (929)
T ss_pred             HHHHhcCCcccccceEEEEEecccc
Confidence                2 22 4466899999999987

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=100.00  E-value=4.8e-45  Score=319.55  Aligned_cols=133  Identities=38%  Similarity=0.577  Sum_probs=120.7

Q ss_pred             HHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc-CC-------
Q psy11221         29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ-NP-------  100 (202)
Q Consensus        29 FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E-~~-------  100 (202)
                      ||+||++||+|+||||+||+|++||+|+++++.++++||+++|+|||||||||+| +|++|||+++||+| .+       
T Consensus         1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L-~~~lg~~~~~if~ef~g~~~~~~~   79 (265)
T cd02016           1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVL-ANVLGKPLEQIFSEFEGKSEFPED   79 (265)
T ss_pred             ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHH-HHHhCCCHHHHHHHhhCCCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999 99999999999999 32       


Q ss_pred             -CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE--------e-ccCCCCeEEEEEEe
Q psy11221        101 -QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI--------L-HETFRPIFTPIIFF  170 (202)
Q Consensus       101 -~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~--------~-~~~~~~~v~PIlih  170 (202)
                       .++||||||+|++.+.            ++.+|+.+|++|++||||||+++||+.        . .++.+++.++|++|
T Consensus        80 ~~~~gdv~yHlg~~~~~------------~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~  147 (265)
T cd02016          80 DEGSGDVKYHLGYSSDR------------KTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIH  147 (265)
T ss_pred             CCCCCCcCcCCccCccc------------ccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEe
Confidence             1579999999999775            455577899999999999999999999        1 22334689999999


Q ss_pred             cccc
Q psy11221        171 FFAL  174 (202)
Q Consensus       171 ~~~~  174 (202)
                      ||+-
T Consensus       148 GDgA  151 (265)
T cd02016         148 GDAA  151 (265)
T ss_pred             cCcc
Confidence            9986

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=1e-39  Score=323.36  Aligned_cols=149  Identities=32%  Similarity=0.454  Sum_probs=132.5

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..++-++   ++++.||+||++||+++||||+||+|++||+++++++.|+++|++++|+||+||||||+| +|++
T Consensus       187 s~e~~~~il~~m---~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvL-a~v~  262 (924)
T PRK09404        187 SAEEKKAILERL---TAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVL-VNVL  262 (924)
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHH-HHhc
Confidence            445666666666   789999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CCC-------CCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE-----
Q psy11221         89 LQKVPRLFSQ-NPQ-------NNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI-----  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~~-------~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~-----  155 (202)
                      |||+++||+| .++       ++||||||+|++.+.            +.. |+.+|++|++||||||+||||+.     
T Consensus       263 G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~------------~g~-gg~mhi~l~~npShleav~Pva~G~A~A  329 (924)
T PRK09404        263 GKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDR------------ETD-GGEVHLSLAFNPSHLEIVNPVVEGSVRA  329 (924)
T ss_pred             CCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccc------------cCC-CCeeEeeccCCccccccccCeehhHHHH
Confidence            9999999999 443       489999999999875            343 55899999999999999999999     


Q ss_pred             ----ecc-CCCCeEEEEEEecccc
Q psy11221        156 ----LHE-TFRPIFTPIIFFFFAL  174 (202)
Q Consensus       156 ----~~~-~~~~~v~PIlih~~~~  174 (202)
                          ..+ +++++++||++|||+-
T Consensus       330 ~q~~~~~~~~~~~~v~v~~~GDgA  353 (924)
T PRK09404        330 RQDRRGDGQDRKKVLPILIHGDAA  353 (924)
T ss_pred             HHHhcCCcccccceEEEEEecCcc
Confidence                233 4567799999999986

>KOG0451|consensus

Probab=100.00  E-value=5.6e-38  Score=300.92  Aligned_cols=143  Identities=26%  Similarity=0.371  Sum_probs=128.9

Q ss_pred             hhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCC
Q psy11221         12 IVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQK   91 (202)
Q Consensus        12 ~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP   91 (202)
                      ++++||++|      +.|++||++|||+.||||.||+|||+.++.++++.+++.+|++||||||||||||+| +.+|+.|
T Consensus       161 ~i~~Lmlks------q~fD~FlatKFpTvKRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLl-t~Ll~fp  233 (913)
T KOG0451|consen  161 EIAELMLKS------QAFDNFLATKFPTVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLL-TALLNFP  233 (913)
T ss_pred             HHHHHHHhh------hhHHHHHHhccchhhhhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHH-HHHhcCC
Confidence            788999988      779999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hhhhccc-CC--------CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE-------
Q psy11221         92 VPRLFSQ-NP--------QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI-------  155 (202)
Q Consensus        92 ~~~IF~E-~~--------~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~-------  155 (202)
                      ++.+|.+ .+        +..|||.+|+-.|-|.            +. .|+++|++|++|||||||||||.|       
T Consensus       234 P~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dy------------kg-~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rq  300 (913)
T KOG0451|consen  234 PAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDY------------KG-LGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQ  300 (913)
T ss_pred             HHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhh------------cc-cCCceEEEecCChhhhhccCchhhcchhHHH
Confidence            9999999 33        2689999999877664            33 466899999999999999999999       


Q ss_pred             --ec---------cCCCCeEEEEEEecccc
Q psy11221        156 --LH---------ETFRPIFTPIIFFFFAL  174 (202)
Q Consensus       156 --~~---------~~~~~~v~PIlih~~~~  174 (202)
                        ++         ...++.|+-+++||||-
T Consensus       301 qsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaa  330 (913)
T KOG0451|consen  301 QSRGEGDYSPDSSAPFGDHVLNVIVHGDAA  330 (913)
T ss_pred             HhhcCCCCCCCCcCCCCCceEEEEEecchh
Confidence              11         13478999999999984

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=98.11  E-value=8.9e-07  Score=78.35  Aligned_cols=122  Identities=20%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             HHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc-CC--CCC
Q psy11221         27 SEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ-NP--QNN  103 (202)
Q Consensus        27 e~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E-~~--~~s  103 (202)
                      ..||..+.++|..+||+|......-..++...+..+.+.+  +.++++ ||++.++| +  .+-|+.++|+| .+  ++.
T Consensus         7 ~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~--D~v~~~-yR~~~~~l-a--~g~~~~~~~~e~~g~~~g~   80 (300)
T PF00676_consen    7 RRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPG--DWVFPY-YRDHGHAL-A--RGIDLEEIFAELLGKAKGH   80 (300)
T ss_dssp             HHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTT--SEEEEC-STTHHHHH-H--TTT-HHHHHHHHHTBTTST
T ss_pred             HHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCC--CEEEec-ccchhhhh-h--ccccccchhHHhcCcccCC
Confidence            5699999999999999999988888888887777766665  877776 99999999 5  46679999999 32  234


Q ss_pred             CCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---e-ccCCCCeEEEEEEeccccc
Q psy11221        104 GDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---L-HETFRPIFTPIIFFFFALS  175 (202)
Q Consensus       104 GDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~-~~~~~~~v~PIlih~~~~~  175 (202)
                      |+..+.+.++                   .+..++....+|+|.+  .|++.   + ....+.+.++|.+|||+-+
T Consensus        81 ~g~~~~~~~~-------------------~~~~~~~~~~~~vg~~--~p~a~G~A~a~k~~~~~~v~v~~~GDga~  135 (300)
T PF00676_consen   81 GGGRHPLHFS-------------------DKGLNILGASSPVGAQ--VPIAAGVALAIKYRGKDGVVVCFFGDGAT  135 (300)
T ss_dssp             TTTGCTTEEE-------------------BTTTTBEEEESSTTTH--HHHHHHHHHHHHHTTSSEEEEEEEETGGG
T ss_pred             CCCccccccc-------------------cccceeeecccccccc--CccccchhHhhhhcCCceeEEEEecCccc
Confidence            4444312111                   1234677888888888  78777   1 2234588999999999863

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=97.18  E-value=0.0003  Score=66.25  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             cchHHHHHHhhhhcCCceeecc----cChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc-
Q psy11221         24 FSNSEFEAFLAKKWSSEKRFGL----EGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ-   98 (202)
Q Consensus        24 ~~Ae~FE~FL~~KF~g~KRFsL----EG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E-   98 (202)
                      ..+-.||+.+.+.|...|.||.    .|.|++.+++...++.      ++.+++ .||++.++|   ..|.++.++|+| 
T Consensus        96 ~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~------~D~v~~-~yR~h~~~L---a~G~~~~~~mael  165 (433)
T PLN02374         96 VLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------DDSVVS-TYRDHVHAL---SKGVPARAVMSEL  165 (433)
T ss_pred             HHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCC------CCEEEc-cCcChHHhh---hcCCCHHHHHHHH
Confidence            4557799999999999999887    9999998887766653      488899 999999999   679999999999 


Q ss_pred             CCC------CCCCcccCce
Q psy11221         99 NPQ------NNGDIRHFVF  111 (202)
Q Consensus        99 ~~~------~sGDVKYHLG  111 (202)
                      .++      +.|+ .+|++
T Consensus       166 ~Gk~~g~~~Grgg-smH~~  183 (433)
T PLN02374        166 FGKATGCCRGQGG-SMHMF  183 (433)
T ss_pred             cCCCCCCCCCCCC-cCccC
Confidence            332      4444 67873

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=86.04  E-value=0.41  Score=42.07  Aligned_cols=115  Identities=11%  Similarity=-0.002  Sum_probs=76.5

Q ss_pred             HHHHHhhhhcCCceeec----ccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc-CCCC
Q psy11221         28 EFEAFLAKKWSSEKRFG----LEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ-NPQN  102 (202)
Q Consensus        28 ~FE~FL~~KF~g~KRFs----LEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E-~~~~  102 (202)
                      .||.-+.+.|-..|=.+    ..|-|+.-+++...++      -++.+++ .||++-..| +  .|.|+.++|+| .++.
T Consensus        10 ~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~------~~D~~~~-~yR~~~~~l-a--~G~~~~~~~~e~~g~~   79 (293)
T cd02000          10 RFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALR------PGDWVFP-TYRDHGHAL-A--RGVDLKEMLAELFGKE   79 (293)
T ss_pred             HHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCC------CCCEEEe-cchhHHHHH-H--cCCCHHHHHHHHcCCC
Confidence            36666666654443333    7899999777665544      2477888 999999999 4  89999999999 3321


Q ss_pred             CC-----CcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---ec-cCCCCeEEEEEEeccc
Q psy11221        103 NG-----DIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---LH-ETFRPIFTPIIFFFFA  173 (202)
Q Consensus       103 sG-----DVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~~-~~~~~~v~PIlih~~~  173 (202)
                      .|     +..+|++..                       ...+....++|-..-|+.+   +. ...++.-..|.++||+
T Consensus        80 ~g~~~G~~g~~h~~~~-----------------------~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDG  136 (293)
T cd02000          80 TGPCKGRGGSMHIGDK-----------------------EKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDG  136 (293)
T ss_pred             CCCCCCCCCCCCCCch-----------------------hcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            11     244555421                       1235566789999999998   11 1123455789999997


Q ss_pred             cc
Q psy11221        174 LS  175 (202)
Q Consensus       174 ~~  175 (202)
                      -.
T Consensus       137 a~  138 (293)
T cd02000         137 AT  138 (293)
T ss_pred             cc
Confidence            64

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
2xta_A	868	Crystal Structure Of The Suca Domain Of Mycobacteri		2e-12
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		2e-12
2jgd_B	933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		4e-08
2jgd_A	933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		4e-08

>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex With Acetyl-Coa (Triclinic Form) Length = 868

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
           FE FL  K+  +KRF LEG E +IP M  VID+  E G++ VV+ MPHRG  N+++   G
Sbjct: 133 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVG 192
Query: 87  QGLQKVPRLFSQN-----PQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLN 141
           +   ++   F  N        +GD+++ +   +T T++  F         GD    ++L 
Sbjct: 193 KPYSQIFSEFEGNLNPSQAHGSGDVKYHL--GATGTYIQMF---------GDNDIEVSLT 241
Query: 142 CWPRAMFLSTPV 153
             P  +    PV
Sbjct: 242 ANPSHLEAVDPV 253

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
           FE FL  K+  +KRF LEG E +IP M  VID+  E G++ VV+ MPHRG  N+++   G
Sbjct: 378 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVG 437
Query: 87  QGLQKVPRLFSQN-----PQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLN 141
           +   ++   F  N        +GD+++ +   +T T++  F         GD    ++L 
Sbjct: 438 KPYSQIFSEFEGNLNPSQAHGSGDVKYHL--GATGTYIQMF---------GDNDIEVSLT 486
Query: 142 CWPRAMFLSTPV 153
             P  +    PV
Sbjct: 487 ANPSHLEAVDPV 498

>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
            E +L  K+   KRF LEG + LIP +K++I  +   G   VV+GM HRG  N++    G
Sbjct: 213 LERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLG 272
Query: 87  QGLQKVPRLFSQNPQNN---GDIRHFVFFSSTPTFLHTFDWIKASQTQGDRG-PHLTLNC 142
           +  Q +   F+   + +   GD+++ + FS              S  Q D G  HL L  
Sbjct: 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFS--------------SDFQTDGGLVHLALAF 318
Query: 143 WPRAMFLSTPVCI 155
            P  + + +PV I
Sbjct: 319 NPSHLEIVSPVVI 331

>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
            E +L  K+   KRF LEG + LIP +K++I  +   G   VV+GM HRG  N++    G
Sbjct: 213 LERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLG 272
Query: 87  QGLQKVPRLFSQNPQNN---GDIRHFVFFSSTPTFLHTFDWIKASQTQGDRG-PHLTLNC 142
           +  Q +   F+   + +   GD+++ + FS              S  Q D G  HL L  
Sbjct: 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFS--------------SDFQTDGGLVHLALAF 318
Query: 143 WPRAMFLSTPVCI 155
            P  + + +PV I
Sbjct: 319 NPSHLEIVSPVVI 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	2e-26
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	4e-26
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	6e-26

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933

 Score =  104 bits (262), Expect = 2e-26
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
            E +L  K+   KRF LEG + LIP +K++I  +   G   VV+GM HRG L
Sbjct: 213 LERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRL 264

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Length = 868

 Score =  103 bits (260), Expect = 4e-26
 Identities = 28/52 (53%), Positives = 35/52 (67%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FE FL  K+  +KRF LEG E +IP M  VID+  E G++ VV+ MPHRG L
Sbjct: 133 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRL 184

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score =  103 bits (259), Expect = 6e-26
 Identities = 28/52 (53%), Positives = 35/52 (67%)

Query: 29  FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNL 80
           FE FL  K+  +KRF LEG E +IP M  VID+  E G++ VV+ MPHRG L
Sbjct: 378 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRL 429

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	99.97
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	99.96
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.96
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	99.14
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	98.8
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	98.68
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	98.27
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	97.42

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=99.97  E-value=1.1e-31  Score=264.33  Aligned_cols=149  Identities=31%  Similarity=0.387  Sum_probs=128.3

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..++-+.   +.+..||+||+++|.++||||+||+|++||+++.+++.|+..|++++|+||+||||+|+| +|++
T Consensus       196 s~e~~~~~y~~m---~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~L-an~~  271 (933)
T 2jgd_A          196 NSEEKKRFLSEL---TAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVL-VNVL  271 (933)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHH-HHTT
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHH-HHHh
Confidence            446666677666   788999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC-----CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE-----ec
Q psy11221         89 LQKVPRLFSQ-NP-----QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI-----LH  157 (202)
Q Consensus        89 ~KP~~~IF~E-~~-----~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~-----~~  157 (202)
                      |+|+.+||+| .+     .++||||||+|++++.            .++ |+.+|++|++|||||+++.|+++     ..
T Consensus       272 G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~------------~~~-gg~~~l~l~~~~shlg~~~p~A~G~A~A~~  338 (933)
T 2jgd_A          272 GKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDF------------QTD-GGLVHLALAFNPSHLEIVSPVVIGSVRARL  338 (933)
T ss_dssp             CCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEE------------EET-TEEEEEEECCCCSSTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhcCCCCCCCCCCCccccCCccccc------------ccC-CCceEEeecccCcccccccCHHHHHHHHHH
Confidence            9999999999 32     1478999999999764            344 44899999999999999999998     11


Q ss_pred             cC----CCCeEEEEEEecccc
Q psy11221        158 ET----FRPIFTPIIFFFFAL  174 (202)
Q Consensus       158 ~~----~~~~v~PIlih~~~~  174 (202)
                      ..    .+.+.++|.+|||+-
T Consensus       339 ~~~~~~~~~~~~vv~v~GDGa  359 (933)
T 2jgd_A          339 DRLDEPSSNKVLPITIHGDAA  359 (933)
T ss_dssp             TTSSSCCGGGEEEEEEEEHHH
T ss_pred             hhccccCCCCeEEEEEECCcc
Confidence            11    247889999999986

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=99.96  E-value=1.3e-30  Score=255.14  Aligned_cols=150  Identities=27%  Similarity=0.368  Sum_probs=127.4

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..++-+.   +.+..||+||+++|.++||||+||+|+++|++.++++.++++|++++|+||+||||+|+| +|++
T Consensus       116 s~e~~~~~y~~m---~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~L-an~~  191 (868)
T 2yic_A          116 TVAEQKYILSKL---NAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVL-ANIV  191 (868)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHH-HHTT
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHH-HHHh
Confidence            456666666666   788999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC-------CCCCCcccCceeecCCccccccccccccccCCCC-ceEEEeecCCCcceecCcEEE----
Q psy11221         89 LQKVPRLFSQ-NP-------QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDR-GPHLTLNCWPRAMFLSTPVCI----  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~-------~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~-~vhlsL~~NPSHLEaVnPVv~----  155 (202)
                      |+|+.+||+| .+       .++||||||+|++++.            .+..|+ .+|+++++|||||+++.|+++    
T Consensus       192 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~------------~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~  259 (868)
T 2yic_A          192 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTY------------IQMFGDNDIEVSLTANPSHLEAVDPVLEGLVR  259 (868)
T ss_dssp             CCCHHHHTTTCC------------CGGGTCCEEEEE------------ECSSSSCEEEEEECCCCSSTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccc------------cccCCCcceeeeecCCCccccccccHHHHHHH
Confidence            9999999999 32       1678999999999775            343243 799999999999999999998    


Q ss_pred             ----e-ccCCC-----CeEEEEEEecccc
Q psy11221        156 ----L-HETFR-----PIFTPIIFFFFAL  174 (202)
Q Consensus       156 ----~-~~~~~-----~~v~PIlih~~~~  174 (202)
                          . .+.++     .+.++|.+|||+-
T Consensus       260 A~k~~~~~~~~~~~~~~~~~vv~~~GDGa  288 (868)
T 2yic_A          260 AKQDLLDTGEEGSDNRFSVVPLMLHGDAA  288 (868)
T ss_dssp             HHHHHHTCSTTSSSCSCCEEEEEEEEHHH
T ss_pred             HHHhhccCCcccccccCCceEEEEECCcc
Confidence                1 11122     6789999999986

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.96  E-value=1e-29  Score=253.80  Aligned_cols=150  Identities=29%  Similarity=0.401  Sum_probs=126.7

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccC
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQG   88 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl   88 (202)
                      |.|++..++-+.   +.+..||+||+++|.++||||+||+|+++|+++++++.++++|++++|+||+||||+|+| +|++
T Consensus       361 s~e~~~~~y~~m---~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~L-a~~~  436 (1113)
T 2xt6_A          361 TVAEQKYILSKL---NAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVL-ANIV  436 (1113)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHH-HHTT
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHH-HHHh
Confidence            446666666666   788999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCChhhhccc-CC-------CCCCCcccCceeecCCccccccccccccccC-CCCceEEEeecCCCcceecCcEEE----
Q psy11221         89 LQKVPRLFSQ-NP-------QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQ-GDRGPHLTLNCWPRAMFLSTPVCI----  155 (202)
Q Consensus        89 ~KP~~~IF~E-~~-------~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~-~g~~vhlsL~~NPSHLEaVnPVv~----  155 (202)
                      |+|+.+||+| .+       .++||||||+|++++.            .+. +++.+|+++++|||||+++.|+++    
T Consensus       437 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~------------~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~  504 (1113)
T 2xt6_A          437 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTY------------IQMFGDNDIEVSLTANPSHLEAVDPVLEGLVR  504 (1113)
T ss_dssp             CCCHHHHSTTC-------------CGGGTCCEEEEE------------ECSSSSCEEEEEECCCCSSTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccc------------cccCCCcceeeeecCCCccccccccHHHHHHH
Confidence            9999999999 32       1578999999999775            343 333799999999999999999998    


Q ss_pred             ----ec-cCCC-----CeEEEEEEecccc
Q psy11221        156 ----LH-ETFR-----PIFTPIIFFFFAL  174 (202)
Q Consensus       156 ----~~-~~~~-----~~v~PIlih~~~~  174 (202)
                          .+ +..+     ...+++.+|||+-
T Consensus       505 A~k~~~~~~~~~~~~~~~~~~v~~~GDGa  533 (1113)
T 2xt6_A          505 AKQDLLDTGEEGSDNRFSVVPLMLHGDAA  533 (1113)
T ss_dssp             HHHHHTTBSTTSSBSCCCEEEEEEEEHHH
T ss_pred             HHHHhccccCccccccCCcEEEEEECCcc
Confidence                11 1112     5789999999986

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=99.14  E-value=1.1e-11  Score=112.24  Aligned_cols=133  Identities=7%  Similarity=-0.014  Sum_probs=100.6

Q ss_pred             chhhhhhhhccccccchHHHHHHhhhhcCCceeec----ccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeec
Q psy11221         10 SEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFG----LEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETT   85 (202)
Q Consensus        10 ~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFs----LEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~   85 (202)
                      .|++.+++-+.   +.+..||+++.++| .|||||    .+|.|++++++...+      +.+++|+ |+|||+.|+| +
T Consensus        73 ~e~~~~~y~~M---~~~R~fe~~~~~~~-~qgr~~~~~~~~GqEA~~vg~~~al------~~~D~v~-~~yR~~~~~l-~  140 (407)
T 1qs0_A           73 PQILRQGMRAM---LKTRIFDSRMVVAQ-RQKKMSFYMQSLGEEAIGSGQALAL------NRTDMCF-PTYRQQSILM-A  140 (407)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHH-HTTSSSCCCCCTTTHHHHHHHHHHS------CTTSEEE-CCSSCHHHHH-H
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHH-hCCccccCcCCCChHHHHHHHHHhc------CCCCEEE-ecccchHHHH-h
Confidence            45555665555   67899999999999 599995    999999999977554      5688888 9999999999 5


Q ss_pred             ccCCCChhhhccc-CCC----CCC-CcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---e
Q psy11221         86 GQGLQKVPRLFSQ-NPQ----NNG-DIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---L  156 (202)
Q Consensus        86 NVl~KP~~~IF~E-~~~----~sG-DVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~  156 (202)
                        .++|+.+||+| .++    ..| .++||++. .+.                      .+..|++||....|+++   +
T Consensus       141 --~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~-~~~----------------------~~~~~~g~lG~~lp~AvGaA~  195 (407)
T 1qs0_A          141 --RDVSLVEMICQLLSNERDPLKGRQLPIMYSV-REA----------------------GFFTISGNLATQFVQAVGWAM  195 (407)
T ss_dssp             --TTCCHHHHHHHHHTCTTCTTTTCSCTTCCCB-GGG----------------------TBCCCCSSSSHHHHHHHHHHH
T ss_pred             --cCCCHHHHHHHHhCCCCCCCCCCCceeecch-hcc----------------------CccccccccccchhHHHHHHH
Confidence              89999999999 221    122 57888875 221                      14567999999999998   1


Q ss_pred             c-cCCCCeEEEEEEeccccccccccc
Q psy11221        157 H-ETFRPIFTPIIFFFFALSHVQMGS  181 (202)
Q Consensus       157 ~-~~~~~~v~PIlih~~~~~~~~~~~  181 (202)
                      . .-.++....|.+|||+-  .++|.
T Consensus       196 A~k~~~~~~~vv~i~GDGa--~~~G~  219 (407)
T 1qs0_A          196 ASAIKGDTKIASAWIGDGA--TAESD  219 (407)
T ss_dssp             HHHHTTCCCCEEEEEETGG--GGSHH
T ss_pred             HHHHhCCCCEEEEEECCch--hhcCh
Confidence            1 11234557899999987  56664

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=98.80  E-value=6e-10  Score=100.31  Aligned_cols=133  Identities=14%  Similarity=0.039  Sum_probs=97.1

Q ss_pred             chhhhhhhhccccccchHHHHHHhhhhcCCcee----ecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeec
Q psy11221         10 SEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKR----FGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETT   85 (202)
Q Consensus        10 ~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KR----FsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~   85 (202)
                      .|++.+++-+.   +.+..||+++.++|. |+|    ++.+|.|++.+++...      .+.+++|++ +||||.  + +
T Consensus        54 ~e~~~~~y~~M---~~~r~fe~~~~~~~~-~gri~~~~~~~GqEa~~vg~~~a------l~~~D~v~~-~yR~~~--~-~  119 (400)
T 2bfd_A           54 KEKVLKLYKSM---TLLNTMDRILYESQR-QGRISFYMTNYGEEGTHVGSAAA------LDNTDLVFG-QAREAG--V-L  119 (400)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHH-TTSSSCCCCCTTCHHHHHHHHHT------SCTTSEEEC-CSCCHH--H-H
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHh-cCCcceeecCCChHHHHHHHHHh------cCCCCEEEe-cCcCHH--H-H
Confidence            35555555555   678999999999998 455    6999999999887644      456899998 999997  5 6


Q ss_pred             ccCCCChhhhccc-CCC----CCC-CcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---e
Q psy11221         86 GQGLQKVPRLFSQ-NPQ----NNG-DIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---L  156 (202)
Q Consensus        86 NVl~KP~~~IF~E-~~~----~sG-DVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~  156 (202)
                      +..|+++.++|+| .++    ..| +++||++.. +                    ++  +..+++||....|+++   +
T Consensus       120 ~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~-~--------------------~~--~~~~~g~lG~~lp~AvG~Al  176 (400)
T 2bfd_A          120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCK-E--------------------RH--FVTISSPLATQIPQAVGAAY  176 (400)
T ss_dssp             HHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBT-T--------------------TT--BCCCCSSTTTHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCccc-c--------------------cC--ccccCccccccccHHHHHHH
Confidence            7899999999999 321    123 589998743 1                    11  5678899999999998   1


Q ss_pred             c-cCCCCeEEEEEEeccccccccccc
Q psy11221        157 H-ETFRPIFTPIIFFFFALSHVQMGS  181 (202)
Q Consensus       157 ~-~~~~~~v~PIlih~~~~~~~~~~~  181 (202)
                      . ...++.-..|.++||+-.  +||.
T Consensus       177 A~~~~~~~~~vv~~~GDGa~--~~G~  200 (400)
T 2bfd_A          177 AAKRANANRVVICYFGEGAA--SEGD  200 (400)
T ss_dssp             HHHHHTCCCCEEEEEETTGG--GSHH
T ss_pred             hhhhhCCCCeEEEEECchhh--hcCh
Confidence            1 101234568999999764  6664

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=98.68  E-value=8.2e-10  Score=98.47  Aligned_cols=126  Identities=12%  Similarity=-0.036  Sum_probs=93.8

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCceeec----ccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceee
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFG----LEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISET   84 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~KRFs----LEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~   84 (202)
                      |.|++..++-+.   +++..||+++ .++.+|||||    .+|.|++++++..+++      .++++++| ||  .|.+ 
T Consensus        42 ~~e~l~~~y~~M---~~~R~fe~~~-~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~------~~D~v~~~-~R--~~~~-  107 (368)
T 1w85_A           42 SDEQLKELMRRM---VYTRILDQRS-ISLNRQGRLGFYAPTAGQEASQIASHFALE------KEDFILPG-YR--DVPQ-  107 (368)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHH-HHHHHTTSCCSCCCCTTCHHHHHHHHHTCC------TTCEEECC-SS--CHHH-
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHH-HHHhhCCccccCCCCCCHHHHHHHHHHhcC------CcCEEEec-ch--hHHH-
Confidence            345555555555   6778999999 8999999999    9999999999887765      58999999 75  4678 


Q ss_pred             cccCCCChhhhccc-CCCCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---ec-cC
Q psy11221         85 TGQGLQKVPRLFSQ-NPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---LH-ET  159 (202)
Q Consensus        85 ~NVl~KP~~~IF~E-~~~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~~-~~  159 (202)
                      ++..|+|+..+|.| .++..|- .+|                          .++.+..|++||....|+++   +. ..
T Consensus       108 ~~~~G~~~~~~~~el~G~~~G~-~~h--------------------------~~~~~~~~~g~lG~~lp~AvG~A~A~~~  160 (368)
T 1w85_A          108 IIWHGLPLYQAFLFSRGHFHGN-QIP--------------------------EGVNVLPPQIIIGAQYIQAAGVALGLKM  160 (368)
T ss_dssp             HHHTTCCHHHHHHHHHTCGGGG-CCC--------------------------TTCCBCCCCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHCCCCCCC-CCC--------------------------cccccCCCccccCccccHHHHHHHHhHh
Confidence            88999999999999 4432220 112                          12346789999999999998   11 11


Q ss_pred             CCCeEEEEEEeccccc
Q psy11221        160 FRPIFTPIIFFFFALS  175 (202)
Q Consensus       160 ~~~~v~PIlih~~~~~  175 (202)
                      .++.-..|.++||+-.
T Consensus       161 ~~~~~~vv~i~GDGa~  176 (368)
T 1w85_A          161 RGKKAVAITYTGDGGT  176 (368)
T ss_dssp             TTCSCCEEEEEETGGG
T ss_pred             hCCCCeEEEEEchhhh
Confidence            1344568999999864

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=98.27  E-value=1.1e-07  Score=84.15  Aligned_cols=135  Identities=12%  Similarity=0.007  Sum_probs=95.1

Q ss_pred             CchhhhhhhhccccccchHHHHHHhhhhcCCce-e--ecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeec
Q psy11221          9 SSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEK-R--FGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETT   85 (202)
Q Consensus         9 s~e~~~~ll~r~~~~~~Ae~FE~FL~~KF~g~K-R--FsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~   85 (202)
                      |.|++..++.+.   .+...||.++.++|.+.| .  ||.+|.|++++++...++.    + ++.++ ++||+  +.+ .
T Consensus        34 ~~~~l~~l~~~m---~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~----~-rD~i~-~s~r~--~~~-~  101 (367)
T 1umd_A           34 EGEKLRRLYRDM---LAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRP----G-FDWVF-PYYRD--HGL-A  101 (367)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCT----T-TSEEE-CCTTT--HHH-H
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCC----C-CcEEE-eCcHH--HHH-H
Confidence            345555544444   566889999999998655 3  8899999999998877663    1 25566 69996  888 8


Q ss_pred             ccCCCChhhhccc-CC------CCCCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---
Q psy11221         86 GQGLQKVPRLFSQ-NP------QNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---  155 (202)
Q Consensus        86 NVl~KP~~~IF~E-~~------~~sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---  155 (202)
                      +..|+++.++|++ .+      .++ +.+||.+.+..                       .+.++++||....|+.+   
T Consensus       102 ~~~G~~~~~~l~~~~g~~~g~~~G~-~~~~h~~~~~~-----------------------~~~~~~g~lG~~l~~a~G~A  157 (367)
T 1umd_A          102 LALGIPLKELLGQMLATKADPNKGR-QMPEHPGSKAL-----------------------NFFTVASPIASHVPPAAGAA  157 (367)
T ss_dssp             HHHTCCHHHHHHHHHTBTTCTTTTC-SCSSCCCBTTT-----------------------TBCCCCSSTTTTHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHhCCCCCCCCCC-CCCCCCccccc-----------------------CcCCCCchhhhhhhHHHHHH
Confidence            9999999999999 33      233 45888864311                       13458999999999988   


Q ss_pred             ec-cCCCCeEEEEEEeccccccccccc
Q psy11221        156 LH-ETFRPIFTPIIFFFFALSHVQMGS  181 (202)
Q Consensus       156 ~~-~~~~~~v~PIlih~~~~~~~~~~~  181 (202)
                      +. .-.++.-..|.++||+-.  ++|.
T Consensus       158 ~a~k~~~~~~~vv~i~GDGa~--~~G~  182 (367)
T 1umd_A          158 ISMKLLRTGQVAVCTFGDGAT--SEGD  182 (367)
T ss_dssp             HHHHHTTCCCCEEEEEETGGG--GSHH
T ss_pred             HHHHHhCCCCeEEEEEccccc--ccCc
Confidence            11 111234468999999864  6664

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=97.42  E-value=1.3e-05  Score=71.51  Aligned_cols=118  Identities=9%  Similarity=0.019  Sum_probs=79.5

Q ss_pred             cchHHHHHHhhhhc-----CCceeecccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc
Q psy11221         24 FSNSEFEAFLAKKW-----SSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ   98 (202)
Q Consensus        24 ~~Ae~FE~FL~~KF-----~g~KRFsLEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E   98 (202)
                      +.+..||..+...|     .|..-. .+|.|++++++..+++.      .+.++. .||  .|.+ +++.|+|+.+||+|
T Consensus        44 ~~~R~~e~~~~~l~~~g~i~gf~~~-~~GqEa~~vg~~~al~~------~D~i~~-~yR--~~~~-~~~~G~~~~~i~~e  112 (365)
T 2ozl_A           44 QTVRRMELKADQLYKQKIIRGFCHL-CDGQEACCVGLEAGINP------TDHLIT-AYR--AHGF-TFTRGLSVREILAE  112 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCSCCCC-CTTCHHHHHHHHHTSCT------TSEEEC-CSC--CHHH-HHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcccccccC-CCChHHHHHHHHHhhCC------CCEEeh-HHH--HHHH-HHhcCCCHHHHHHH
Confidence            45577998887765     333333 58999999999888763      233444 398  6899 99999999999999


Q ss_pred             -CCC------C-CCCcccCceeecCCccccccccccccccCCCCceEEEeecCCCcceecCcEEE---e-ccCCCCeEEE
Q psy11221         99 -NPQ------N-NGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPRAMFLSTPVCI---L-HETFRPIFTP  166 (202)
Q Consensus        99 -~~~------~-sGDVKYHLG~Ss~~~~le~~d~v~~~~t~~g~~vhlsL~~NPSHLEaVnPVv~---~-~~~~~~~v~P  166 (202)
                       .++      + .||  ||++ +.+                        +..+.+++-...|+++   + ....++..++
T Consensus       113 ~~g~~~g~~~g~gg~--~H~~-~~~------------------------~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~v  165 (365)
T 2ozl_A          113 LTGRKGGCAKGKGGS--MHMY-AKN------------------------FYGGNGIVGAQVPLGAGIALACKYNGKDEVC  165 (365)
T ss_dssp             HTTCTTSTTTTSSCT--TCCC-BTT------------------------BCCCCCSTTTHHHHHHHHHHHHHHHTCCCCE
T ss_pred             HcCCCCCCCCCCCCC--CCcC-ccc------------------------cCCCcchhhhhhHHHHHHHHHHHhcCCCceE
Confidence             432      2 455  8883 211                        1224467778889988   1 1111345668


Q ss_pred             EEEeccccccccccc
Q psy11221        167 IIFFFFALSHVQMGS  181 (202)
Q Consensus       167 Ilih~~~~~~~~~~~  181 (202)
                      |.+|||+-  .++|.
T Consensus       166 v~~~GDGa--~~~G~  178 (365)
T 2ozl_A          166 LTLYGDGA--ANQGQ  178 (365)
T ss_dssp             EEEEETTG--GGCHH
T ss_pred             EEEECchh--hhccH
Confidence            99999987  45663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	86.64

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.19  Score=42.55  Aligned_cols=64  Identities=11%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             chHHHHHHhhhhcCCceeec----ccChhhHHHHHHHHHHHHHhcCCceEEeecCCccccceeecccCCCChhhhccc
Q psy11221         25 SNSEFEAFLAKKWSSEKRFG----LEGCEILIPAMKQVIDKSTELGVESVVMGMPHRGNLISETTGQGLQKVPRLFSQ   98 (202)
Q Consensus        25 ~Ae~FE~FL~~KF~g~KRFs----LEG~EslIP~L~~iI~~aa~~GV~~IViGMaHRGRLNVL~~NVl~KP~~~IF~E   98 (202)
                      ..-.||+.+.+.|...|..|    --|-|+..+++.      ...+-++.+++ .||++...| +  .|.|+..+++|
T Consensus        41 ~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~------~~l~~~D~~~~-~yR~~~~~l-a--~G~~~~~~~ae  108 (361)
T d2ozla1          41 TVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLE------AGINPTDHLIT-AYRAHGFTF-T--RGLSVREILAE  108 (361)
T ss_dssp             HHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHH------HTSCTTSEEEC-CSCCHHHHH-H--TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHH------HhCCccCEecc-cccchheee-e--ecccchhhhhh
Confidence            44679999999999888765    359998866543      34556788888 599999999 5  58899999999