Psyllid ID: psy11265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-----
Protein Sequence
MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccHHHHHHHcccHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEEEEccHHHHccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccHHHHHHHccccccccEEcccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHcccccccHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccEEEEEEEEEEccccccccccccccHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccHHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHcccccccccccccEEEEEccccccccHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEcccccccHHHHHHHcccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHccEEEEEEcccccEEEEEEcccccccEEEcEEEccccccEEcccccHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEHHHHHHHHHHHHccccccccccccEEEEEEEEcccccccHHHHHHHcccccccEEEEcccccccccccHHHHHEEEEEEcHcHccEEEEcccEEEcccHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHcccccEEccccHHHHHHHHHHccccccHccccccHHHHcccHHHHHHHHHccccEEEEEEEEEEccccHccccccccccHHHHHHcHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccccHHHHHHHcccccccEEEEcccccccccccHHHHHHEEEEEEEcEEEEcccEEEcccccHHHHHHHHHHHcccccEEEEEcEEEEEEccccccccccEEEEEccHHHHcccccccccHcHHHccccccccHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHccccccHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHccccEEcccccccccHHHHHHHHHHHHHcccHHHHccccEEEEEEccHHHHHHHHccccccccEEEEcccccHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccHHcHHHHHHHHccccccccccccHHHHHHHcccccEEEEcccccccccccEEEEEcccEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
mshqwpenvgilgiefyfpsqyvdqtelekhdqvsagkytiglgqakmgfcsdleDINSICLTVVSNLMKRYELDYAQIGqllqvespeeyeQESWQLTEAEKLAsipklkedgntlYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQdrldarrpvppaEFTRILAAKKEnlhkypfrsetppgeylfdgsyyleSIDDFHRRHykkyeagtawpenvgilgiefyfpsqyvdqtelekhdqvsagkytiglgqakmgfcsdledinsicLTVHFHFVTqlcdsdntilddsrklgkpmqlvlgkKFKLEVWETLVKHMSIGEIskfvcdkslvsaypfvSKTLRDAAkhsadgteqskrhccgvqmhtGYEDLNELLKKSQDLTFTIELLqvespeeyeQESWQLTEAEKLAsipklkedgntlYKAGNIQGALDKYSTALGYLEQLMLKQTFvnrtvkppimshqwpenvgilgiefyfpsqyvdqtelekhdqvsagkytiglgqakmgfcsdlEDINSICLTLSIQCYLGALDACYQGYRAKAAKltgkelslgdfdavlfhtPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNdfisatdrteyeGAEAFAHIKNLEDTYFNRDIEQYFMshnrteyegAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLignmytpslYGCLVSLLIQTPwerlqgmsriglfsygsdNIKALFRRGKAHMNVWNCEEAGADLKRVAAldstmlgpvsSMLKQLSSKLVSAYPFVSKTLRDAAkhsadgteqskrhccgvqmhtGYEDLNELLKKsqdltftiekpndedwkklndlkipillnysqckldqkdyySVIEHTttvltydpegtvtakvls
Flexible Loop (DISEMBL)
MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLsdvqdrldarrpvppaeFTRILAakkenlhkypfrsetppgeyLFDGSYYLESIDDFHRRHYKKYeagtawpenVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKhsadgteqskrhCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKhsadgteqskrhCCGVQMHTGYEDLNELLKKSQDLTFTiekpndedwkklNDLKIPILLNYSQCKLDQKDYYSVIEHTttvltydpegtvtakvls
Low Complexity Region (SEG)
MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Disordered region (IsUnstruct)
******ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV**************************EDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRL********AEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL****************HCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV***************************DGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVS*******************HCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE*********
Disordered Region (DISOPRED)
****WPE*VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQ****EKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDD*RKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKT*************QSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNR*************NLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEE*********************MLKQLSSKLVSAYPFVSKTL*****************CCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Disordered Region (DISEMBL)
MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE*********WQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD*************RHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES*********QLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRD*************RHCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Disordered Region (DISPRO)
****WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGTVTAKVLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	945	2.2.26 [Sep-21-2011]
Q7YRC1	330	AH receptor-interacting p	yes	N/A	0.186	0.533	0.437	4e-40
O08915	330	AH receptor-interacting p	yes	N/A	0.186	0.533	0.453	1e-39
Q5FWY5	330	AH receptor-interacting p	yes	N/A	0.186	0.533	0.442	3e-39
Q924K1	328	Aryl-hydrocarbon-interact	no	N/A	0.188	0.542	0.448	2e-38
O97628	330	AH receptor-interacting p	N/A	N/A	0.186	0.533	0.442	2e-38
O00170	330	AH receptor-interacting p	yes	N/A	0.186	0.533	0.442	2e-38
Q9JLG9	328	Aryl-hydrocarbon-interact	no	N/A	0.188	0.542	0.448	2e-38
Q95MN9	384	Aryl-hydrocarbon-interact	N/A	N/A	0.188	0.463	0.437	1e-37
Q95MP1	328	Aryl-hydrocarbon-interact	no	N/A	0.188	0.542	0.437	1e-37
Q9NZN9	384	Aryl-hydrocarbon-interact	no	N/A	0.188	0.463	0.437	1e-37

>sp|Q7YRC1|AIP_BOVIN AH receptor-interacting protein OS=Bos taurus GN=AIP PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 120/183 (65%), Gaps = 7/183 (3%)

Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FH+ T   D +  +LDDSR  GKPM+L++GKKFKL VWET+V+ M  GEI++F CD   V
Sbjct: 36  FHYRTLCSDEEGAVLDDSRVRGKPMELIIGKKFKLPVWETIVRTMREGEIAQFCCDXKHV 95

Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+LR+ A  +     + +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct: 96  VLYPLVAKSLRNIA--AGKDPLEGQRHCCGIAQMHXHSSLGHADLDALQQNPQPLIFDIE 153

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L+VE+P  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct: 154 MLKVENPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query: 472 LKQ 474
           +K+
Sbjct: 214 MKE 216

May play a positive role in AHR-mediated (aromatic hydrocarbon receptor) signaling, possibly by influencing its receptivity for ligand and/or its nuclear targeting.
Bos taurus (taxid: 9913)

>sp|O08915|AIP_MOUSE AH receptor-interacting protein OS=Mus musculus GN=Aip PE=1 SV=1

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 122/183 (66%), Gaps = 7/183 (3%)

Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FHF T   D++ +++DDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct: 36  FHFRTLHSDNEGSVIDDSRTRGKPMELIVGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 95

Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+LR+ A+   D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct: 96  VLYPLVAKSLRNIAE-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQNPQPLIFHIE 153

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G ++ A  KY  A+  L+ L 
Sbjct: 154 MLKVESPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGQVKEAAAKYYDAIACLKNLQ 213

Query: 472 LKQ 474
           +K+
Sbjct: 214 MKE 216

May play a positive role in AHR-mediated (aromatic hydrocarbon receptor) signaling, possibly by influencing its receptivity for ligand and/or its nuclear targeting.

Mus musculus (taxid: 10090)

>sp|Q5FWY5|AIP_RAT AH receptor-interacting protein OS=Rattus norvegicus GN=Aip PE=1 SV=1

 Score =  164 bits (415), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 120/183 (65%), Gaps = 7/183 (3%)

Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FHF T   D + +++DDSR  GKPM+L++GKKFKL VWET+V+ M  GE ++F+CD    
Sbjct: 36  FHFRTLHSDPEGSVIDDSRARGKPMELIIGKKFKLPVWETIVRTMREGETAQFLCDVKHT 95

Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+LR+ A+   D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct: 96  VLYPLVAKSLRNIAE-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQNPQPLIFHIE 153

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G ++ A  KY  A+  L+ L 
Sbjct: 154 MLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGQVKEAAAKYYDAIACLKNLQ 213

Query: 472 LKQ 474
           +K+
Sbjct: 214 MKE 216

May play a positive role in AHR-mediated (aromatic hydrocarbon receptor) signaling, possibly by influencing its receptivity for ligand and/or its nuclear targeting.

Rattus norvegicus (taxid: 10116)

>sp|Q924K1|AIPL1_MOUSE Aryl-hydrocarbon-interacting protein-like 1 OS=Mus musculus GN=Aipl1 PE=2 SV=2

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 116/185 (62%), Gaps = 7/185 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + T++DDS+++G+PM +++G  FKLEVWETL+  M +GE+++F CD  
Sbjct: 33  VTFHFRTMKCDDERTVIDDSKQVGQPMSIIIGNMFKLEVWETLLTSMRLGEVAEFWCDTI 92

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV----QMHT-GYEDLNELLKKSQDLTFT 409
               YP +S++LR  A+   D T     H CG+      HT GYEDL+EL K+ Q L F 
Sbjct: 93  HTGVYPMLSRSLRQVAE-GKDPTSWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLVFL 150

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IELLQVE+P EY++E+W L   E++ ++P L  +GN LYK G    A  KY  A+  L  
Sbjct: 151 IELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRN 210

Query: 470 LMLKQ 474
           L  K+
Sbjct: 211 LQTKE 215

May be important in protein trafficking and/or protein folding and stabilization.

Mus musculus (taxid: 10090)

>sp|O97628|AIP_CHLAE AH receptor-interacting protein OS=Chlorocebus aethiops GN=AIP PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 120/183 (65%), Gaps = 7/183 (3%)

Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FH+ T   D++ T+LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct: 36  FHYRTLHSDNEGTVLDDSRVRGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 95

Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+L + A        + +RHCCGV QMH     G+ DL+ L +  Q L F +E
Sbjct: 96  VLYPLVAKSLGNIA--VGKDPLEGQRHCCGVAQMHEHSSLGHADLDALQQNPQPLVFHME 153

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct: 154 MLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query: 472 LKQ 474
           +K+
Sbjct: 214 MKE 216

Cellular negative regulator of the hepatitis B virus (HBV) X protein.

Chlorocebus aethiops (taxid: 9534)

>sp|O00170|AIP_HUMAN AH receptor-interacting protein OS=Homo sapiens GN=AIP PE=1 SV=2

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 119/183 (65%), Gaps = 7/183 (3%)

Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FH+ T   D + T+LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct: 36  FHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 95

Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+LR+ A        + +RHCCGV QM      G+ DL+ L +  Q L F +E
Sbjct: 96  VLYPLVAKSLRNIA--VGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHME 153

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct: 154 MLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query: 472 LKQ 474
           +K+
Sbjct: 214 MKE 216

Cellular negative regulator of the hepatitis B virus (HBV) X protein.

Homo sapiens (taxid: 9606)

>sp|Q9JLG9|AIPL1_RAT Aryl-hydrocarbon-interacting protein-like 1 OS=Rattus norvegicus GN=Aipl1 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 116/185 (62%), Gaps = 7/185 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + T++DDS+++G+PM +++G  FKLEVWETL+  M +GE+++F CD  
Sbjct: 33  VTFHFRTMKCDEERTVIDDSKQVGQPMNIIIGNMFKLEVWETLLTSMRLGEVAEFWCDTI 92

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV----QMHT-GYEDLNELLKKSQDLTFT 409
               YP +S++LR  A+   D T     H CG+      HT GYEDL+EL K+ Q L F 
Sbjct: 93  HTGVYPMLSRSLRQVAE-GKDPTSWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLIFL 150

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IELLQVE+P EY++E+W L   E++ ++P L  +GN LYK G    A  KY  A+  L  
Sbjct: 151 IELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRN 210

Query: 470 LMLKQ 474
           L  K+
Sbjct: 211 LQTKE 215

May be important in protein trafficking and/or protein folding and stabilization.

Rattus norvegicus (taxid: 10116)

>sp|Q95MN9|AIPL1_PANPA Aryl-hydrocarbon-interacting protein-like 1 OS=Pan paniscus GN=AIPL1 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + T++DDSR++G+PM +++G  FKLEVWE L+  M + E+++F CD  
Sbjct: 33  VIFHFRTMKCDEERTVIDDSRQVGQPMHIIIGNMFKLEVWEILLTSMRVHEVAEFWCDTI 92

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV----QMHT-GYEDLNELLKKSQDLTFT 409
               YP +S++LR  A+   D TE    H CG+      HT GYEDL+EL K+ Q L F 
Sbjct: 93  HTGVYPILSRSLRQMAQ-GKDPTEWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLVFV 150

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IELLQV++P +Y++E+W L+  EK+ ++P L  +GN L+K G  + A  KY  A+  L  
Sbjct: 151 IELLQVDAPSDYQRETWNLSNHEKMKAVPVLHGEGNRLFKLGRYEEASSKYQEAIICLRN 210

Query: 470 LMLKQ 474
           L  K+
Sbjct: 211 LQTKE 215

May be important in protein trafficking and/or protein folding and stabilization.

Pan paniscus (taxid: 9597)

>sp|Q95MP1|AIPL1_BOVIN Aryl-hydrocarbon-interacting protein-like 1 OS=Bos taurus GN=AIPL1 PE=1 SV=1

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 7/185 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + T++DDS+++G PM +++G  FKLEVWE L+  M + E+++F CD  
Sbjct: 33  VTFHFRTMKCDEERTVIDDSKQVGHPMHIIIGNMFKLEVWEILLTSMRVSEVAEFWCDTI 92

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV----QMHT-GYEDLNELLKKSQDLTFT 409
               YP +S++LR  A+   D TE    H CG+      HT GYEDL+EL K+ Q L F 
Sbjct: 93  HTGVYPILSRSLRQMAE-GKDPTEWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLIFI 150

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IELLQVE+P +Y++E+W L   EK+ ++P L  +GN L+K G  + A +KY  A+  L  
Sbjct: 151 IELLQVEAPSQYQRETWNLNNQEKMQAVPILHGEGNRLFKLGRYEEASNKYQEAIVCLRN 210

Query: 470 LMLKQ 474
           L  K+
Sbjct: 211 LQTKE 215

May be important in protein trafficking and/or protein folding and stabilization.

Bos taurus (taxid: 9913)

>sp|Q9NZN9|AIPL1_HUMAN Aryl-hydrocarbon-interacting protein-like 1 OS=Homo sapiens GN=AIPL1 PE=1 SV=2

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + T++DDSR++G+PM +++G  FKLEVWE L+  M + E+++F CD  
Sbjct: 33  VIFHFRTMKCDEERTVIDDSRQVGQPMHIIIGNMFKLEVWEILLTSMRVHEVAEFWCDTI 92

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV----QMHT-GYEDLNELLKKSQDLTFT 409
               YP +S++LR  A+   D TE    H CG+      HT GYEDL+EL K+ Q L F 
Sbjct: 93  HTGVYPILSRSLRQMAQ-GKDPTEWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLVFV 150

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IELLQV++P +Y++E+W L+  EK+ ++P L  +GN L+K G  + A  KY  A+  L  
Sbjct: 151 IELLQVDAPSDYQRETWNLSNHEKMKAVPVLHGEGNRLFKLGRYEEASSKYQEAIICLRN 210

Query: 470 LMLKQ 474
           L  K+
Sbjct: 211 LQTKE 215

May be important in protein trafficking and/or protein folding and stabilization.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	945
156547053	317	PREDICTED: aryl-hydrocarbon-interacting	0.187	0.558	0.557	6e-52
307204115	319	Aryl-hydrocarbon-interacting protein-lik	0.185	0.548	0.574	8e-51
312378775	363	hypothetical protein AND_09580 [Anophele	0.183	0.476	0.562	2e-50
189242424	328	PREDICTED: similar to AGAP000725-PA [Tri	0.209	0.603	0.507	3e-50
270016257	324	hypothetical protein TcasGA2_TC002337 [T	0.186	0.543	0.551	4e-50
347964377	320	AGAP000725-PA [Anopheles gambiae str. PE	0.185	0.546	0.532	6e-50
118793366	332	AGAP011684-PA [Anopheles gambiae str. PE	0.187	0.533	0.519	2e-49
322796590	317	hypothetical protein SINV_11301 [Solenop	0.239	0.712	0.449	3e-49
332373098	322	unknown [Dendroctonus ponderosae]	0.187	0.549	0.529	6e-48
193641074	320	PREDICTED: AH receptor-interacting prote	0.184	0.543	0.543	4e-46

>gi|156547053|ref|XP_001601597.1| PREDICTED: aryl-hydrocarbon-interacting protein-like 1-like [Nasonia vitripennis]

 Score =  213 bits (541), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 133/183 (72%), Gaps = 6/183 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CDS  T++DDSR +GKPM+LVLGK+FKLEVWE +V+ M+I E++ F  DKS
Sbjct: 24  VVFHFRTTKCDSSKTVIDDSRSMGKPMELVLGKQFKLEVWEVIVQKMAINEVAVFTVDKS 83

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFTIE 411
           LV+ YPFVSKTLR+A K S    E+   HCCGV +     GY+DLN+L+K  Q+L FTIE
Sbjct: 84  LVNPYPFVSKTLREAGKPSG---EKRNHHCCGVILQNEGIGYDDLNDLIKNPQNLEFTIE 140

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           LLQ   P EYE+ESWQ+TE EKL +IP L+E GNT ++  + + A + Y+ A+G +EQLM
Sbjct: 141 LLQAVLPHEYEKESWQMTEDEKLENIPVLREKGNTQFREKDYEAAANTYAQAIGIVEQLM 200

Query: 472 LKQ 474
           L +
Sbjct: 201 LAE 203

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204115|gb|EFN82984.1| Aryl-hydrocarbon-interacting protein-like 1 [Harpegnathos saltator]

 Score =  209 bits (531), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 130/181 (71%), Gaps = 6/181 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD + TI+DDS+ +G PM+LVLGKKFKLEVWE +V+ M++ E++ F   KS
Sbjct: 27  VIFHFKTTKCDYNKTIIDDSKAMGSPMELVLGKKFKLEVWEAIVQKMALNEVACFKVHKS 86

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMH---TGYEDLNELLKKSQDLTFTIE 411
           LV+AYPFVSKTLR+A K     +++   HCCGV +     GY DLNEL+K SQDL FTIE
Sbjct: 87  LVTAYPFVSKTLREAGKPQ---SQKRNHHCCGVTLQNEGVGYADLNELIKYSQDLEFTIE 143

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           L++V  P EYE+ESWQ+TE EKL SIP LKE GN L+K      A + Y+ A+G LEQLM
Sbjct: 144 LIKVTFPNEYEKESWQMTENEKLESIPYLKEKGNVLFKEKKYDSASETYAKAIGMLEQLM 203

Query: 472 L 472
           L
Sbjct: 204 L 204

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378775|gb|EFR25254.1| hypothetical protein AND_09580 [Anopheles darlingi]

 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/183 (56%), Positives = 132/183 (72%), Gaps = 10/183 (5%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T+ CD   T+LDDSR   KPM+LVLGKKFKLEVWE +V+ M++GE+++F CD+S
Sbjct: 76  VTFHFQTRKCD--GTLLDDSRTRQKPMELVLGKKFKLEVWEAIVQQMAVGEVARFRCDQS 133

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFTIE 411
           LV  YPFV+KT+RDAAK       + ++HCCG+ +     GY DL+EL  + QDL FTIE
Sbjct: 134 LVLQYPFVAKTIRDAAK-----PPEERKHCCGMTVQNEGIGYRDLDELFVQPQDLEFTIE 188

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           LL VESP EYEQESWQL++ EKL  + +L+E GNT Y       AL+ YS A+G +EQLM
Sbjct: 189 LLSVESPGEYEQESWQLSDEEKLQRVNQLREQGNTAYGQQRYAAALESYSYAIGIIEQLM 248

Query: 472 LKQ 474
           LK+
Sbjct: 249 LKE 251

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242424|ref|XP_969747.2| PREDICTED: similar to AGAP000725-PA [Tribolium castaneum]

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 139/211 (65%), Gaps = 13/211 (6%)

Query: 269 KYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLG--KPMQLVLG 326
           K T+  G   + F    +D       VHFHF T+LCD + T+LDDSRK+G  KP +LVLG
Sbjct: 13  KRTLYAGTKPVSF----KDGTKSLFQVHFHFQTRLCDKEKTLLDDSRKMGSGKPFELVLG 68

Query: 327 KKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCG 386
           KKFKLEVWE +V+ M++ E+++F   K LV  YPFVSKTLRD A       E  K HCC 
Sbjct: 69  KKFKLEVWEAVVQKMALNEVAEFKVKKELVMQYPFVSKTLRDVAL----PREARKSHCCA 124

Query: 387 VQMHT---GYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKED 443
           + + T   GY+DLN  LK   DL FTIEL++VE PE+YE+ESWQ+ E EKL  +P+LKE 
Sbjct: 125 MTIQTEGVGYDDLNTFLKDPSDLEFTIELVKVEQPEDYEKESWQMDEEEKLKKVPELKEQ 184

Query: 444 GNTLYKAGNIQGALDKYSTALGYLEQLMLKQ 474
           GN  +K  N + A D Y+ A+G +EQLM+K+
Sbjct: 185 GNAEFKKKNYEEASDYYAKAIGIIEQLMIKE 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016257|gb|EFA12703.1| hypothetical protein TcasGA2_TC002337 [Tribolium castaneum]

 Score =  206 bits (525), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 131/185 (70%), Gaps = 9/185 (4%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLG--KPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCD 352
           VHFHF T+LCD + T+LDDSRK+G  KP +LVLGKKFKLEVWE +V+ M++ E+++F   
Sbjct: 31  VHFHFQTRLCDKEKTLLDDSRKMGSGKPFELVLGKKFKLEVWEAVVQKMALNEVAEFKVK 90

Query: 353 KSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFT 409
           K LV  YPFVSKTLRD A       E  K HCC + + T   GY+DLN  LK   DL FT
Sbjct: 91  KELVMQYPFVSKTLRDVAL----PREARKSHCCAMTIQTEGVGYDDLNTFLKDPSDLEFT 146

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
           IEL++VE PE+YE+ESWQ+ E EKL  +P+LKE GN  +K  N + A D Y+ A+G +EQ
Sbjct: 147 IELVKVEQPEDYEKESWQMDEEEKLKKVPELKEQGNAEFKKKNYEEASDYYAKAIGIIEQ 206

Query: 470 LMLKQ 474
           LM+K+
Sbjct: 207 LMIKE 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964377|ref|XP_311262.5| AGAP000725-PA [Anopheles gambiae str. PEST] gi|333467502|gb|EAA06906.5| AGAP000725-PA [Anopheles gambiae str. PEST]

 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 133/184 (72%), Gaps = 9/184 (4%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLG-KPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
           V FH+ T+ CD   T++DDSR  G KPM+LVLGKKFKLEVWE++V+ M++ E+++F CD+
Sbjct: 30  VKFHYQTRKCDEARTLIDDSRAHGQKPMELVLGKKFKLEVWESIVQQMALHEVARFRCDR 89

Query: 354 SLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFTI 410
           SLV  YPFVSKT+RDA K       + ++HCCG+ +     GY DL+EL    QDL FTI
Sbjct: 90  SLVQQYPFVSKTIRDAQK-----PREERKHCCGMTVQNEGIGYRDLDELFTHPQDLEFTI 144

Query: 411 ELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL 470
           E+L +ESP+EYE+ESWQL++ EK A + +L+E GN  Y+A ++  A D YS A G +EQL
Sbjct: 145 EILSIESPDEYEKESWQLSDDEKRALVGRLREQGNAAYRANDLTAARDAYSYATGIIEQL 204

Query: 471 MLKQ 474
           MLK+
Sbjct: 205 MLKE 208

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118793366|ref|XP_320825.3| AGAP011684-PA [Anopheles gambiae str. PEST] gi|116117343|gb|EAA00094.3| AGAP011684-PA [Anopheles gambiae str. PEST]

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/183 (51%), Positives = 131/183 (71%), Gaps = 6/183 (3%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FH+ T+ CD++ T++D+SR   KPMQLVLGK+FKLEVWE++V+ M + E+++F CDKS
Sbjct: 41  VTFHYETRKCDAERTLIDESRTHQKPMQLVLGKQFKLEVWESIVQQMGLHEVARFRCDKS 100

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMH---TGYEDLNELLKKSQDLTFTIE 411
           LV  YPFVSKT+RDA K    G    ++HCCG+      TGY DL+EL    QDL FTIE
Sbjct: 101 LVQQYPFVSKTIRDAQKQPQGG---KRKHCCGLTFQNDGTGYRDLDELFIHPQDLEFTIE 157

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           +L +E+P+EY +E+WQL++ EK   + +L+E GN  Y+  N+  A D YS A+G +EQLM
Sbjct: 158 ILSIETPDEYGKEAWQLSDDEKRTLVSRLREQGNVAYRTNNLTAARDAYSYAIGIIEQLM 217

Query: 472 LKQ 474
           LK+
Sbjct: 218 LKE 220

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796590|gb|EFZ19064.1| hypothetical protein SINV_11301 [Solenopsis invicta]

 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 153/247 (61%), Gaps = 21/247 (8%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHF T  CD D T++DDSR +G PM+L+LGKKFKLEVWE +++ M++ E++ F   KS
Sbjct: 26  VIFHFKTTKCDFDKTVIDDSRTMGNPMELILGKKFKLEVWEVIIQKMALNEVACFKVHKS 85

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFTIE 411
           +++ YPFVSKTLR+A K       Q + HCCGV +     GY DL+EL+K  QDL FTIE
Sbjct: 86  VLTTYPFVSKTLREAGKPQT----QRRNHCCGVTLQNEGIGYADLDELIKCPQDLEFTIE 141

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           LL+V  P+EYE+ESWQ+TE EKL SIP +KE GN L++      A + Y+ A+G LEQLM
Sbjct: 142 LLKVVLPDEYEKESWQMTENEKLESIPHMKEKGNNLFREKKYDDASEIYAKAIGILEQLM 201

Query: 472 LKQ-------TFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSA--- 521
           L +       + +NR   P ++++       +L  E+Y   ++       + D V A   
Sbjct: 202 LAEKPNDEEWSALNRMKIPLLLNYA---QCKLLNKEYYSVIEHCTTVLTTEPDNVKALYR 258

Query: 522 -GKYTIG 527
            GK  IG
Sbjct: 259 RGKAYIG 265

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373098|gb|AEE61690.1| unknown [Dendroctonus ponderosae]

 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 132/185 (71%), Gaps = 8/185 (4%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGK--PMQLVLGKKFKLEVWETLVKHMSIGEISKFVCD 352
           + FHF T++C+ D T+LDDSRK+GK  P+ ++LGKKFKLEVWE +++ M++ E+++F  D
Sbjct: 28  IFFHFQTKICNKDKTLLDDSRKMGKGEPLHIILGKKFKLEVWEVILQKMALNEVAQFTVD 87

Query: 353 KSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTG---YEDLNELLKKSQDLTFT 409
           KSLV  YPFVSKTLRD  +      E    H C + M +G   Y+DLN LLKKS+DL FT
Sbjct: 88  KSLVMEYPFVSKTLRDMHRPKE---EIKHTHTCAMSMQSGGVGYDDLNNLLKKSEDLEFT 144

Query: 410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
            E+++VE P+EYE+E+WQL E E++  IPKLK  GN  YK  N + A + YS A+G LEQ
Sbjct: 145 FEIVKVEQPDEYEKETWQLNEDEQIDMIPKLKLQGNDEYKKKNFKKASELYSKAIGMLEQ 204

Query: 470 LMLKQ 474
           LMLK+
Sbjct: 205 LMLKE 209

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193641074|ref|XP_001945936.1| PREDICTED: AH receptor-interacting protein-like [Acyrthosiphon pisum]

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/182 (54%), Positives = 129/182 (70%), Gaps = 8/182 (4%)

Query: 295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
           V FHFVT++  S N+++DDS K  K M++VLGKKFKLEVWE ++K M  GEISKF+  KS
Sbjct: 30  VSFHFVTRVV-STNSVIDDSYKWPKHMEIVLGKKFKLEVWEIILKSMREGEISKFIVHKS 88

Query: 355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMH---TGYEDLNELLKKSQDLTFTIE 411
           LV++YPF+SKTLRDA + S   T     HCC  Q+    TGY+DLN+LL    DL FTI+
Sbjct: 89  LVASYPFISKTLRDAGRTSVPSTS----HCCTAQLQKNGTGYDDLNDLLADPADLEFTID 144

Query: 412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
           LL++E P  +E+E+W L E EK  +IP+LKE GN LY  G  + A +KY  ALG+LEQ+M
Sbjct: 145 LLKIEVPGSFEKETWLLDENEKRNTIPELKEAGNELYHKGKYKEAEEKYMLALGFLEQIM 204

Query: 472 LK 473
           +K
Sbjct: 205 MK 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	945
FB|FBgn0030345	331	CG1847 [Drosophila melanogaste	0.184	0.525	0.502	2.7e-56
ZFIN|ZDB-GENE-030131-6735	342	aip "aryl hydrocarbon receptor	0.186	0.514	0.484	6.3e-52
MGI|MGI:109622	330	Aip "aryl-hydrocarbon receptor	0.186	0.533	0.453	6e-50
UNIPROTKB|Q3SZ99	330	AIP "AIP protein" [Bos taurus	0.186	0.533	0.448	1.6e-49
RGD|628619	330	Aip "aryl-hydrocarbon receptor	0.186	0.533	0.442	1.6e-49
UNIPROTKB|F1RUZ6	330	AIP "Uncharacterized protein"	0.186	0.533	0.453	2e-49
UNIPROTKB|E2R2G5	330	AIP "Uncharacterized protein"	0.186	0.533	0.448	2.1e-49
UNIPROTKB|O00170	330	AIP "AH receptor-interacting p	0.186	0.533	0.459	2.7e-49
UNIPROTKB|Q7YRC1	330	AIP "AH receptor-interacting p	0.186	0.533	0.448	3.2e-49
MGI|MGI:2148800	328	Aipl1 "aryl hydrocarbon recept	0.188	0.542	0.448	1.4e-48

FB|FBgn0030345 CG1847 [Drosophila melanogaster (taxid:7227)]

 Score = 460 (167.0 bits), Expect = 2.7e-56, Sum P(2) = 2.7e-56
 Identities = 92/183 (50%), Positives = 122/183 (66%)

Query:   295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
             V FHF T+    D+ I+DDSRK+ KPM+LVLGKKFKLEVWE +V+ MS+ E++KF   KS
Sbjct:    43 VKFHFQTRRA-GDSRIIDDSRKMEKPMELVLGKKFKLEVWELIVQQMSLNEVAKFTVHKS 101

Query:   355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT---GYEDLNELLKKSQDLTFTIE 411
             L + YPF+SKTLRD  K       + +RHCCG+ +     GY DL+ELL+   DL F IE
Sbjct:   102 LCAQYPFISKTLRDIGKKP-----EERRHCCGMTLQNEGIGYTDLDELLQNPSDLEFIIE 156

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             L  +E PE+YE+E WQ+++ EK+ +   L+E GN  YKA     A   Y  A+G +EQLM
Sbjct:   157 LFSIELPEQYEKERWQMSDDEKMLATSTLRERGNNFYKASRFTEAETCYREAVGIVEQLM 216

Query:   472 LKQ 474
             LK+
Sbjct:   217 LKE 219

GO:0017162 "aryl hydrocarbon receptor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-030131-6735 aip "aryl hydrocarbon receptor interacting protein" [Danio rerio (taxid:7955)]

 Score = 442 (160.7 bits), Expect = 6.3e-52, Sum P(2) = 6.3e-52
 Identities = 91/188 (48%), Positives = 127/188 (67%)

Query:   295 VHFHFVTQLCDSDNTILDDSRKLG---KPMQLVLGKKFKLEVWETLVKHMSIGEISKFVC 351
             V FH+ T LCD   T+LDDSR +G   KPM+L+LGKKFKL VWE +V  M  GEI++F C
Sbjct:    34 VKFHYRTSLCDG--TLLDDSRTMGGHSKPMELILGKKFKLPVWEQVVTTMKEGEIAEFTC 91

Query:   352 DKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDL 406
             D    + YP VS +LR+ ++   D  E  +RHCCG+ Q+H+    G+ DL++L    Q L
Sbjct:    92 DVKHTALYPLVSLSLRNISQ-GKDPLE-GQRHCCGIAQVHSHHSLGHHDLDKLQSNPQPL 149

Query:   407 TFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGY 466
              FT+ELLQV SP  Y+QE W +T+ EKL +IP++ E+GN L+K+G+I GA +KY  A+  
Sbjct:   150 IFTLELLQVLSPGSYQQEIWAMTDDEKLGAIPQIHEEGNALFKSGDISGAAEKYYNAIAC 209

Query:   467 LEQLMLKQ 474
             L+ L +K+
Sbjct:   210 LKSLQMKE 217

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:109622 Aip "aryl-hydrocarbon receptor-interacting protein" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 83/183 (45%), Positives = 122/183 (66%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FHF T   D++ +++DDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct:    36 FHFRTLHSDNEGSVIDDSRTRGKPMELIVGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A+   D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAE-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQNPQPLIFHIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G ++ A  KY  A+  L+ L 
Sbjct:   154 MLKVESPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGQVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0003712 "transcription cofactor activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006805 "xenobiotic metabolic process" evidence=IPI

GO:0010738 "regulation of protein kinase A signaling cascade" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0022417 "protein maturation by protein folding" evidence=ISO

GO:0036004 "GAF domain binding" evidence=ISO

GO:0044445 "cytosolic part" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051344 "negative regulation of cyclic-nucleotide phosphodiesterase activity" evidence=ISO

UNIPROTKB|Q3SZ99 AIP "AIP protein" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 82/183 (44%), Positives = 120/183 (65%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FH+ T   D +  +LDDSR  GKPM+L++GKKFKL VWET+V+ M  GEI++F CD   V
Sbjct:    36 FHYRTLRSDEEGAVLDDSRVRGKPMELIIGKKFKLPVWETIVRTMREGEIAQFCCDVKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A    D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAA-GKDPLE-GQRHCCGIAQMHEHNSLGHADLDALQQNPQPLIFDIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VE+P  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct:   154 MLKVENPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0036004 "GAF domain binding" evidence=IEA

GO:0022417 "protein maturation by protein folding" evidence=IEA

GO:0006805 "xenobiotic metabolic process" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

RGD|628619 Aip "aryl-hydrocarbon receptor-interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 81/183 (44%), Positives = 120/183 (65%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FHF T   D + +++DDSR  GKPM+L++GKKFKL VWET+V+ M  GE ++F+CD    
Sbjct:    36 FHFRTLHSDPEGSVIDDSRARGKPMELIIGKKFKLPVWETIVRTMREGETAQFLCDVKHT 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A+   D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAE-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQNPQPLIFHIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G ++ A  KY  A+  L+ L 
Sbjct:   154 MLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGQVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0003712 "transcription cofactor activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO;ISS

GO:0006805 "xenobiotic metabolic process" evidence=IEA;ISO

GO:0010738 "regulation of protein kinase A signaling cascade" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0022417 "protein maturation by protein folding" evidence=ISO;ISS

GO:0036004 "GAF domain binding" evidence=IEA;ISO

GO:0044445 "cytosolic part" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=ISO;ISS

GO:0051344 "negative regulation of cyclic-nucleotide phosphodiesterase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1RUZ6 AIP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 83/183 (45%), Positives = 121/183 (66%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FH+ T   D +  +LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F CD   V
Sbjct:    36 FHYRTLRSDEEGAVLDDSRLRGKPMELIMGKKFKLPVWETIVCTMREGEIAQFRCDVKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A    D  E  +RHCCG+ QMH     G+ DL+ L +K Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAA-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQKPQPLIFDIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VE+P  Y+Q+ W +T+ EK+ ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct:   154 MLKVENPGTYQQDPWAMTDEEKVKAVPVIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0036004 "GAF domain binding" evidence=IEA

GO:0022417 "protein maturation by protein folding" evidence=IEA

GO:0006805 "xenobiotic metabolic process" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|E2R2G5 AIP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
 Identities = 82/183 (44%), Positives = 119/183 (65%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FH+ T   D +  +LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F CD   V
Sbjct:    36 FHYRTLHSDKEGAVLDDSRVRGKPMELIIGKKFKLPVWETIVSTMREGEIAQFCCDVKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A    D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAA-GKDPLE-GQRHCCGIAQMHEHSSLGHADLDALQQNPQPLIFDIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VE+P  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct:   154 MLKVENPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0036004 "GAF domain binding" evidence=IEA

GO:0022417 "protein maturation by protein folding" evidence=IEA

GO:0006805 "xenobiotic metabolic process" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|O00170 AIP "AH receptor-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.7e-49, Sum P(2) = 2.7e-49
 Identities = 84/183 (45%), Positives = 122/183 (66%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FH+ T   D + T+LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct:    36 FHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QM--HT--GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A    D  E  +RHCCGV QM  H+  G+ DL+ L +  Q L F +E
Sbjct:    96 VLYPLVAKSLRNIAV-GKDPLE-GQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHME 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VESP  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct:   154 MLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0006805 "xenobiotic metabolic process" evidence=IEA

GO:0010738 "regulation of protein kinase A signaling cascade" evidence=IEA

GO:0044445 "cytosolic part" evidence=IEA

GO:0051344 "negative regulation of cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0036004 "GAF domain binding" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0004871 "signal transducer activity" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0022417 "protein maturation by protein folding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q7YRC1 AIP "AH receptor-interacting protein" [Bos taurus (taxid:9913)]

 Score = 418 (152.2 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
 Identities = 82/183 (44%), Positives = 120/183 (65%)

Query:   297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
             FH+ T   D +  +LDDSR  GKPM+L++GKKFKL VWET+V+ M  GEI++F CD   V
Sbjct:    36 FHYRTLCSDEEGAVLDDSRVRGKPMELIIGKKFKLPVWETIVRTMREGEIAQFCCDXKHV 95

Query:   357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
               YP V+K+LR+ A    D  E  +RHCCG+ QMH     G+ DL+ L +  Q L F IE
Sbjct:    96 VLYPLVAKSLRNIAA-GKDPLE-GQRHCCGIAQMHXHSSLGHADLDALQQNPQPLIFDIE 153

Query:   412 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM 471
             +L+VE+P  Y+Q+ W +T+ EK  ++P + ++GN LY+ G+++ A  KY  A+  L+ L 
Sbjct:   154 MLKVENPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQ 213

Query:   472 LKQ 474
             +K+
Sbjct:   214 MKE 216

GO:0006805 "xenobiotic metabolic process" evidence=ISS

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:2148800 Aipl1 "aryl hydrocarbon receptor-interacting protein-like 1" [Mus musculus (taxid:10090)]

 Score = 418 (152.2 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 83/185 (44%), Positives = 116/185 (62%)

Query:   295 VHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKS 354
             V FHF T  CD + T++DDS+++G+PM +++G  FKLEVWETL+  M +GE+++F CD  
Sbjct:    33 VTFHFRTMKCDDERTVIDDSKQVGQPMSIIIGNMFKLEVWETLLTSMRLGEVAEFWCDTI 92

Query:   355 LVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQ----MHT-GYEDLNELLKKSQDLTFT 409
                 YP +S++LR  A+   D T     H CG+      HT GYEDL+EL K+ Q L F 
Sbjct:    93 HTGVYPMLSRSLRQVAE-GKDPTSWHV-HTCGLANMFAYHTLGYEDLDELQKEPQPLVFL 150

Query:   410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 469
             IELLQVE+P EY++E+W L   E++ ++P L  +GN LYK G    A  KY  A+  L  
Sbjct:   151 IELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRN 210

Query:   470 LMLKQ 474
             L  K+
Sbjct:   211 LQTKE 215

GO:0001895 "retina homeostasis" evidence=IMP

GO:0001917 "photoreceptor inner segment" evidence=IDA

GO:0001918 "farnesylated protein binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0018343 "protein farnesylation" evidence=ISO

GO:0030823 "regulation of cGMP metabolic process" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.3	LOW CONFIDENCE prediction!
3rd Layer	2.3.3.10	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	945
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	1e-43
pfam08540	282	pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c	5e-42
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	4e-40
pfam01154	171	pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c	2e-37
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	4e-31
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	3e-30
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	4e-30
pfam01154	171	pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c	2e-29
pfam01154	171	pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c	2e-28
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	4e-23
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	2e-22
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	9e-20
cd00827	324	cd00827, init_cond_enzymes, "initiating" condensin	9e-20
cd00827	324	cd00827, init_cond_enzymes, "initiating" condensin	6e-19
COG3425	377	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt	5e-16
COG3425	377	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt	4e-15
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	6e-15
pfam08540	282	pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c	1e-13
cd00827	324	cd00827, init_cond_enzymes, "initiating" condensin	2e-12
COG3425	377	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt	3e-09
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	6e-07
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	6e-06
TIGR01835	379	TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta	8e-05
TIGR01835	379	TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta	8e-05
TIGR01835	379	TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta	8e-05
TIGR01835	379	TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta	8e-04

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score =  164 bits (418), Expect = 1e-43
 Identities = 90/246 (36%), Positives = 113/246 (45%), Gaps = 86/246 (34%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKE-----LSLGDFDAVLFHTPYCKLVQKSLARLA 603
           LSIQCYL ALD CY+ Y  K  K  GK       +L DFD ++FH+PYCKLVQKSLARL 
Sbjct: 208 LSIQCYLSALDRCYKSYCKKIEKQWGKSGSDRKFTLDDFDYMIFHSPYCKLVQKSLARLL 267

Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
           YNDF+                                                 S+TD +
Sbjct: 268 YNDFLRNP----------------------------------------------SSTDTS 281

Query: 664 EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYF 723
            YEG EA + +K LEDTY                                  +RD+E+ F
Sbjct: 282 LYEGLEALSGLK-LEDTYT---------------------------------DRDLEKAF 307

Query: 724 MSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSD 783
           M  SK+ F++ TKP L +   +GNMYT SLYGCL SLL     + L G  R+G+FSYGS 
Sbjct: 308 MKASKELFDKKTKPSLLVPTQVGNMYTASLYGCLASLLSSKSAQELAG-KRVGMFSYGSG 366

Query: 784 NIKALF 789
              ++F
Sbjct: 367 LAASMF 372

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal

 Score =  154 bits (392), Expect = 5e-42
 Identities = 87/244 (35%), Positives = 106/244 (43%), Gaps = 83/244 (34%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLT---GKELSLGDFDAVLFHTPYCKLVQKSLARLAYN 605
           LS+QCYL ALD+CY+ Y  K  K T   G +  L DFD V+FH+PYCKLVQKSLAR    
Sbjct: 34  LSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLAR---- 89

Query: 606 DFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEY 665
                                                        L YNDF+      + 
Sbjct: 90  ---------------------------------------------LLYNDFLRNPSSDKG 104

Query: 666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS 725
            G                              YE  EA   +K LED+Y +RD+E+ FM 
Sbjct: 105 NGV-----------------------------YEKLEALGGLK-LEDSYTDRDLEKAFMQ 134

Query: 726 HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI 785
            SK  F++ TKP L L   +GNMYT SLY  L SLL     + L G  RIG+FSYGS   
Sbjct: 135 LSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAG-KRIGMFSYGSGLA 193

Query: 786 KALF 789
            +LF
Sbjct: 194 ASLF 197

Length = 282

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score =  154 bits (390), Expect = 4e-40
 Identities = 60/78 (76%), Positives = 69/78 (88%)

Query: 5  WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 64
          WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV
Sbjct: 1  WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV 60

Query: 65 VSNLMKRYELDYAQIGQL 82
          VS LM+RY +DY QIG+L
Sbjct: 61 VSKLMERYNIDYDQIGRL 78

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal

 Score =  137 bits (347), Expect = 2e-37
 Identities = 55/75 (73%), Positives = 63/75 (84%)

Query: 8  NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
          +VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTVV  
Sbjct: 1  DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQK 60

Query: 68 LMKRYELDYAQIGQL 82
          LM+R  LDY  IG+L
Sbjct: 61 LMERNNLDYDCIGRL 75

Length = 171

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score =  127 bits (321), Expect = 4e-31
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 19/103 (18%)

Query: 236 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
           WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV
Sbjct: 1   WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV 60

Query: 296 HFHFVTQLCDSDN--------------TILDDSRKLGKP-MQL 323
               V++L +  N              TI+D S+ +    MQL
Sbjct: 61  ----VSKLMERYNIDYDQIGRLEVGTETIIDKSKSVKTVLMQL 99

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score =  124 bits (314), Expect = 3e-30
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
           WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLT
Sbjct: 1   WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLT 59

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score =  124 bits (313), Expect = 4e-30
 Identities = 45/77 (58%), Positives = 57/77 (74%)

Query: 6  PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVV 65
          P+NVGIL +E YFP   V Q  LE HD VS GKYTIGLGQ  M FC+D+ED+ S+ LTVV
Sbjct: 2  PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVV 61

Query: 66 SNLMKRYELDYAQIGQL 82
           +L+++Y +D  QIG+L
Sbjct: 62 KSLLEKYNIDPKQIGRL 78

Length = 459

>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal

 Score =  114 bits (287), Expect = 2e-29
 Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 4/79 (5%)

Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFH 298
           +VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV   
Sbjct: 1   DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV--- 57

Query: 299 FVTQLCDSDNTILDDSRKL 317
            V +L + +N   D   +L
Sbjct: 58  -VQKLMERNNLDYDCIGRL 75

Length = 171

>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal

 Score =  111 bits (280), Expect = 2e-28
 Identities = 44/56 (78%), Positives = 50/56 (89%)

Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
           +VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLT
Sbjct: 1   DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLT 56

Length = 171

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score =  103 bits (258), Expect = 4e-23
 Identities = 37/59 (62%), Positives = 43/59 (72%)

Query: 237 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
           P+NVGIL +E YFP   V Q  LE HD VS GKYTIGLGQ  M FC+D+ED+ S+ LTV
Sbjct: 2   PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTV 60

Length = 459

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score =  100 bits (252), Expect = 2e-22
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
           P+NVGIL +E YFP   V Q  LE HD VS GKYTIGLGQ  M FC+D+ED+ S+ LT
Sbjct: 2   PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLT 59

Length = 459

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score = 93.3 bits (232), Expect = 9e-20
 Identities = 68/245 (27%), Positives = 90/245 (36%), Gaps = 88/245 (35%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
           LS  CYL ALD+CY+ +  K  KL GK+ S+ D D  +FH PY KLVQKS A        
Sbjct: 208 LSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDADYFVFHAPYNKLVQKSFA-------- 259

Query: 609 SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFI---SATDRTEY 665
                                                    RL YNDF    S+ D    
Sbjct: 260 -----------------------------------------RLVYNDFQRNASSVDEDAK 278

Query: 666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS 725
           E    FA                                    + +++Y NRD+E+    
Sbjct: 279 EKLAPFA----------------------------------GLSSDESYQNRDLEKVSQQ 304

Query: 726 HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI 785
            +K  ++   +P   +   +GNMYT SLY  L SL+       L G  RI +FSYGS   
Sbjct: 305 VAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKH-SELAG-KRILMFSYGSGLT 362

Query: 786 KALFR 790
             +F 
Sbjct: 363 ATMFS 367

Length = 459

>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

 Score = 91.0 bits (226), Expect = 9e-20
 Identities = 72/342 (21%), Positives = 103/342 (30%), Gaps = 79/342 (23%)

Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQ 552
           +VGI  I  Y P   VD  EL +   V  GKYT G+GQ  M      ED+ ++ +  + +
Sbjct: 1   DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58

Query: 553 CYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLF-HTPYC---KLVQKSLARLAYNDFI 608
                          + A      +   D   ++          K     LA L      
Sbjct: 59  A-------------LERAG-----IDPDDIGLLIVATESPIDKGKSAATYLAELLGLTNA 100

Query: 609 SATDRSQ--YEGAEAFAHIKNLEDTYFNR-------DIEQY-FMSHNLYRTRLA------ 652
            A D  Q  Y G  A     NL ++   R       DI  Y     +     L       
Sbjct: 101 EAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLDEGSALEPTLGDGAAAM 160

Query: 653 --------YNDFISATDRT----------EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHN 694
                       I +T  T                     K         +     +   
Sbjct: 161 LVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEA 220

Query: 695 RTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSH-------SKQSFERLTKPG-------LY 740
                   A    K L+    + DI+ YF+ H        +   ++L  P          
Sbjct: 221 ---AHKLIAKVVRKALDRAGLSEDID-YFVPHQPNGKKILEAVAKKLGGPPEKASQTRWI 276

Query: 741 LANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
           L   +GNMY  S+   L SLL      +L+   R+ LFSYGS
Sbjct: 277 LLRRVGNMYAASILLGLASLLES---GKLKAGDRVLLFSYGS 315

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324

>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 8  NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
          +VGI  I  Y P   VD  EL +   V  GKYT G+GQ  M      ED+ ++ +     
Sbjct: 1  DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58

Query: 68 LMKRYELDYAQIGQLL 83
           ++R  +D   IG L+
Sbjct: 59 ALERAGIDPDDIGLLI 74

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324

>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

 Score = 80.8 bits (200), Expect = 5e-16
 Identities = 77/332 (23%), Positives = 104/332 (31%), Gaps = 76/332 (22%)

Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQ 552
            +GI+GI  Y P   +   EL +   V   K   GLG  +       ED  ++ +     
Sbjct: 2   MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVE---- 57

Query: 553 CYLGALDACYQGYRAKAAK--LTGKELSLGDFDAVLFHT---PY-CKLVQKSLAR-LAYN 605
                           AA+  L   ++      AV+  +   P   K     +A  L  N
Sbjct: 58  ----------------AARNALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLN 101

Query: 606 DFISATDR--SQYEGAEAFAHIKNLEDTYFNR-------DIEQYFMSHNLYRTRLA---- 652
               A D   + Y G  A        ++           D  QY     L  T  A    
Sbjct: 102 PSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYAPGDALEYTAGAGAVA 161

Query: 653 ----YNDFISA--TDRTEYEGAEAFAHIKNLEDTYFNRD----IEQYFMSHNRTEYEGAE 702
                N  I A       Y   +     +     Y   D       YF  H     +G  
Sbjct: 162 FLIGKNPPIVAEFEGTGSY-TTDTPDFWRPDGQPYPYVDGRFSEPAYF-KHVENAAKG-- 217

Query: 703 AFAHIKNLEDTYFNRDIEQYFMSHS------KQSFERL------TKPGLYLANLIGNMYT 750
            +     L    F+     Y + H       K++ + L       KPGL     IGN YT
Sbjct: 218 -YMEKTGLSPDDFD-----YIVFHQPNGKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYT 271

Query: 751 PSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
            SL   L SLL      +L G  RI LFSYGS
Sbjct: 272 GSLLLGLASLLDN---AKLPG-DRILLFSYGS 299

Length = 377

>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 8  NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
           +GI+GI  Y P   +   EL +   V   K   GLG  +       ED  ++ +    N
Sbjct: 2  MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61

Query: 68 LMKRYELDYAQIGQLL 83
           +KR ++D ++IG ++
Sbjct: 62 ALKRADIDPSKIGAVI 77

Length = 377

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score = 77.9 bits (192), Expect = 6e-15
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 144 SMFSIHI--NRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
           SMFS+ +  + +    L  L+  LSD+++RLD+R  V P EF   +  +++  HK  F  
Sbjct: 370 SMFSLRVSQDASPGSALDKLIASLSDLKNRLDSRHCVAPEEFEETMELREQAHHKKNF-- 427

Query: 202 ETPPG--EYLFDGSYYLESIDDFHRRHYKK 229
            TP G  + LF G++YLE +D  HRR Y +
Sbjct: 428 -TPQGSIDSLFPGTWYLERVDSKHRRSYAR 456

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 7/90 (7%)

Query: 144 SMFSIHI--NRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
           S+FS+ +  + +    L+ L+TK+ D++++LD+R  V P EF   +  +++  HK  F  
Sbjct: 195 SLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETMELREQAHHKKNF-- 252

Query: 202 ETPPG--EYLFDGSYYLESIDDFHRRHYKK 229
            TP G  + LF G+YYL ++D  +RR Y +
Sbjct: 253 -TPQGSIDSLFPGTYYLTNVDSLYRRSYAR 281

Length = 282

>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
           +VGI  I  Y P   VD  EL +   V  GKYT G+GQ  M      ED+ ++ +  
Sbjct: 1   DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEA 55

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324

>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 291
            +GI+GI  Y P   +   EL +   V   K   GLG  +       ED  ++
Sbjct: 2   MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTM 54

Length = 377

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
           TV  H+  +L   D T+ D S+  GKP +  LG    +  W+  +  M +GE  K     
Sbjct: 10  TVTVHYTGKL--EDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPP 67

Query: 354 SLVSAY 359
            L  AY
Sbjct: 68  EL--AY 71

Length = 94

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 144 SMFSIHINRA-AVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSE 202
           +MFS+ ++      +L  +   + DV ++L +R  V P +F   L   +   H+Y  +  
Sbjct: 364 TMFSLRLHEGQHPFSLSNIAKVM-DVSEKLKSRHEVSPEKFVETLKLME---HRYGAKDF 419

Query: 203 TPPGE--YLFDGSYYLESIDDFHRRHYKKYEAGTA 235
            P  +   L  G+YYL  +D  +RR Y +     +
Sbjct: 420 VPSKDVSLLAPGTYYLTEVDSLYRRFYDRKALNGS 454

Length = 459

>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 9  VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 57
          +GI  I F+ P  Y+D T L +   V   K+ IG+GQ KM      EDI
Sbjct: 1  IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379

>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
           +GI  I F+ P  Y+D T L +   V   K+ IG+GQ KM      EDI
Sbjct: 1   IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379

>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
           +GI  I F+ P  Y+D T L +   V   K+ IG+GQ KM      EDI
Sbjct: 1   IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379

>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 19/91 (20%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
            S + YL A +  +  Y  +        LSL DF A  FH P+ K+  K+L  +      
Sbjct: 198 YSNEQYLNAFENAWNDYAKR------TGLSLADFAAFCFHVPFTKMGLKALRHIL-KKNY 250

Query: 609 SATDRSQYEGAEAFAHIKN--LEDTYFNRDI 637
              D            ++N  LE   +NR++
Sbjct: 251 EDED----------ESVQNAYLESIIYNREV 271

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	945
KOG1393|consensus	462		100.0
COG3425	377	PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi	100.0
TIGR01833	454	HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth	100.0
KOG0545|consensus	329		100.0
PLN02577	459	hydroxymethylglutaryl-CoA synthase	100.0
PF01154	174	HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s	100.0
COG3425	377	PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi	100.0
TIGR01835	379	HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt	100.0
TIGR01833	454	HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth	100.0
PLN02577	459	hydroxymethylglutaryl-CoA synthase	100.0
KOG1393|consensus	462		100.0
PF08540	282	HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s	99.98
KOG0545|consensus	329		99.97
TIGR01835	379	HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt	99.96
PF01154	174	HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s	99.95
KOG0544|consensus	108		99.94
KOG0543|consensus	397		99.92
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.88
KOG0549|consensus	188		99.87
PRK04262	347	hypothetical protein; Provisional	99.77
TIGR00748	345	HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase	99.75
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.73
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.72
KOG0552|consensus	226		99.72
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.68
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.6
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.6
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.51
PRK05963	326	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.39
PRK04262	347	hypothetical protein; Provisional	99.37
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.36
TIGR00748	345	HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase	99.35
TIGR00747	318	fabH 3-oxoacyl-(acyl-carrier-protein) synthase III	99.32
PRK09258	338	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.31
PRK12879	325	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.28
cd00830	320	KAS_III Ketoacyl-acyl carrier protein synthase III	99.28
PRK07204	329	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.2
PRK09352	319	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.17
cd00827	324	init_cond_enzymes "initiating" condensing enzymes	99.12
PRK06840	339	hypothetical protein; Validated	99.06
KOG0543|consensus	397		99.04
CHL00203	326	fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr	99.04
PRK12880	353	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.02
PRK05963	326	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.0
PLN02326	379	3-oxoacyl-[acyl-carrier-protein] synthase III	98.99
cd00831	361	CHS_like Chalcone and stilbene synthases; plant-sp	98.96
PRK09258	338	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.94
PRK12879	325	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.86
cd00830	320	KAS_III Ketoacyl-acyl carrier protein synthase III	98.84
CHL00203	326	fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr	98.79
PRK07204	329	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.79
PF08540	282	HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s	98.76
PRK06840	339	hypothetical protein; Validated	98.74
PRK06816	378	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.74
COG0332	323	FabH 3-oxoacyl-[acyl-carrier-protein]	98.71
TIGR00747	318	fabH 3-oxoacyl-(acyl-carrier-protein) synthase III	98.71
PLN02326	379	3-oxoacyl-[acyl-carrier-protein] synthase III	98.67
PRK12880	353	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.67
cd00827	324	init_cond_enzymes "initiating" condensing enzymes	98.66
PRK09352	319	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.57
PLN03169	391	chalcone synthase family protein; Provisional	98.31
PLN03169	391	chalcone synthase family protein; Provisional	98.29
COG0332	323	FabH 3-oxoacyl-[acyl-carrier-protein]	98.29
PLN03171	399	chalcone synthase-like protein; Provisional	98.18
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.18
PRK06816	378	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.15
cd00831	361	CHS_like Chalcone and stilbene synthases; plant-sp	98.14
PRK07515	372	3-oxoacyl-(acyl carrier protein) synthase III; Rev	98.1
PRK01490	435	tig trigger factor; Provisional	97.99
PLN03171	399	chalcone synthase-like protein; Provisional	97.55
PRK07515	372	3-oxoacyl-(acyl carrier protein) synthase III; Rev	97.5
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.48
PLN03168	389	chalcone synthase; Provisional	97.31
PLN03170	401	chalcone synthase; Provisional	97.23
PLN03172	393	chalcone synthase family protein; Provisional	97.23
PF08541	90	ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC	97.14
PLN03173	391	chalcone synthase; Provisional	97.12
PLN02377	502	3-ketoacyl-CoA synthase	97.04
PLN02932	478	3-ketoacyl-CoA synthase	96.9
PLN02932	478	3-ketoacyl-CoA synthase	96.66
PLN03168	389	chalcone synthase; Provisional	96.3
PF00195	226	Chal_sti_synt_N: Chalcone and stilbene synthases,	95.98
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.83
PLN02377	502	3-ketoacyl-CoA synthase	95.78
cd00327	254	cond_enzymes Condensing enzymes; Family of enzymes	95.76
KOG0549|consensus	188		95.72
KOG4648|consensus	536		95.28
cd00327	254	cond_enzymes Condensing enzymes; Family of enzymes	95.19
PLN03170	401	chalcone synthase; Provisional	95.07
KOG4234|consensus	271		95.05
KOG0547|consensus	606		94.8
PLN02192	511	3-ketoacyl-CoA synthase	94.6
PLN00415	466	3-ketoacyl-CoA synthase	94.34
PLN03172	393	chalcone synthase family protein; Provisional	94.3
PLN03173	391	chalcone synthase; Provisional	93.81
cd00825	332	decarbox_cond_enzymes decarboxylating condensing e	92.98
KOG0553|consensus	304		92.16
PLN02192	511	3-ketoacyl-CoA synthase	91.94
PRK08313	386	acetyl-CoA acetyltransferase; Provisional	91.65
cd00825	332	decarbox_cond_enzymes decarboxylating condensing e	91.05
PRK12578	385	acetyl-CoA acetyltransferase; Provisional	90.99
PLN02854	521	3-ketoacyl-CoA synthase	90.8
cd00751	386	thiolase Thiolase are ubiquitous enzymes that cata	90.42
TIGR01930	386	AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi	89.32
PLN02854	521	3-ketoacyl-CoA synthase	88.97
PLN00415	466	3-ketoacyl-CoA synthase	88.86
PRK08235	393	acetyl-CoA acetyltransferase; Provisional	88.22
PRK06065	392	acetyl-CoA acetyltransferase; Provisional	87.9
cd00829	375	SCP-x_thiolase Thiolase domain associated with ste	87.74
PRK06064	389	acetyl-CoA acetyltransferase; Provisional	87.31
KOG0551|consensus	390		87.12
PRK05656	393	acetyl-CoA acetyltransferase; Provisional	86.58
COG3424	356	BcsA Predicted naringenin-chalcone synthase [Secon	86.21
PRK09051	394	beta-ketothiolase; Provisional	85.5
PRK05790	393	putative acyltransferase; Provisional	85.49
PRK09052	399	acetyl-CoA acetyltransferase; Provisional	84.96
PRK06059	399	lipid-transfer protein; Provisional	84.26
PRK08242	402	acetyl-CoA acetyltransferase; Validated	83.93
cd00826	393	nondecarbox_cond_enzymes nondecarboxylating conden	83.6
PRK06289	403	acetyl-CoA acetyltransferase; Provisional	83.21
TIGR02845	327	spore_V_AD stage V sporulation protein AD. Bacillu	83.02
PRK08170	426	acetyl-CoA acetyltransferase; Provisional	82.92
PRK07516	389	acetyl-CoA acetyltransferase; Provisional	82.6
PRK08304	337	stage V sporulation protein AD; Validated	82.41
PRK07108	392	acetyl-CoA acetyltransferase; Provisional	81.7
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.51

>KOG1393|consensus

Probab=100.00  E-value=1.3e-69  Score=583.51  Aligned_cols=206  Identities=45%  Similarity=0.682  Sum_probs=181.8

Q ss_pred             CCCCCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcc
Q psy11265          2 SHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQ   81 (945)
Q Consensus         2 ~~~~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~   81 (945)
                      ...||.+|||.+|++|||++||||+|||+++||+.|||||||||.+|+||+++|||+|||+||+++||+||+||++.|||
T Consensus         5 ~~~~p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGR   84 (462)
T KOG1393|consen    5 ASNWPKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGR   84 (462)
T ss_pred             cccCccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcce
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCC
Q psy11265         82 LLQVESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVD  156 (945)
Q Consensus        82 l~~v~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~  156 (945)
                      | +||||          |-+|+|||+     +++..+||.     +.++. +..|||||||+| |.+|++||.  ++.|+
T Consensus        85 L-EVGTE----------TiiDKSKSVKt~LMqLF~~sgNt-----dIEGi-DttnACYGGtaA-LfnavnWiE--SssWD  144 (462)
T KOG1393|consen   85 L-EVGTE----------TIIDKSKSVKTVLMQLFEESGNT-----DIEGI-DTTNACYGGTAA-LFNAVNWIE--SSSWD  144 (462)
T ss_pred             E-Eecce----------eccccchHHHHHHHHHhhhcCCC-----ccccc-cccccccccHHH-HHHHhhhhh--hcccC
Confidence            9 99999          666666665     889999999     88884 999999999999 999999998  77899


Q ss_pred             Ccceee-ecccccccccCCCCCCC-------------cceeec-cccccccccccCcccCCCCCCcc-ccCcc----hhH
Q psy11265        157 TLKTLV-TKLSDVQDRLDARRPVP-------------PAEFTR-ILAAKKENLHKYPFRSETPPGEY-LFDGS----YYL  216 (945)
Q Consensus       157 ~~~~LV-asdia~y~~~~~~~~t~-------------P~~~~~-~~~~~~~~~~~~Df~rP~~~~~~-~vdG~----~YL  216 (945)
                      |+.+|| |+|||+|..+++| ||.             |.+|+. ..+.  |.+|++|||+|+..+|+ .|||+    |||
T Consensus       145 Gr~aivV~gDIAvY~~G~aR-pTGGAgAVAmLIgPnApi~ferglr~t--hM~hayDFyKPdl~SEyPvVDGklSi~cYl  221 (462)
T KOG1393|consen  145 GRYAIVVCGDIAVYAKGNAR-PTGGAGAVAMLIGPNAPIIFERGLRAT--HMQHAYDFYKPDLLSEYPVVDGKLSIQCYL  221 (462)
T ss_pred             CceeEEEEeeEEEecCCCCC-CCCCcceEEEEEcCCCceEecccchhh--hhhhhhhccCCCCCCcCceecCeehHHHHH
Confidence            999999 9999999996655 443             667775 4444  67888888888877776 58886    888


Q ss_pred             HHHHHHHHHHHhhh
Q psy11265        217 ESIDDFHRRHYKKY  230 (945)
Q Consensus       217 ~~ld~~~~~y~~r~  230 (945)
                      .++|.||..|.++.
T Consensus       222 ~Ald~cY~~~~kK~  235 (462)
T KOG1393|consen  222 SALDRCYTVYRKKI  235 (462)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888876664

>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

Probab=100.00  E-value=2.6e-54  Score=476.22  Aligned_cols=260  Identities=27%  Similarity=0.258  Sum_probs=232.9

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |.|||.++++|+|+++|+++||+++||+||+|+++||||.+|||++++||+||||+|                       
T Consensus         1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT   80 (377)
T COG3425           1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS   80 (377)
T ss_pred             CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceEEEec
Confidence            579999999999999999999999999999999999999999999999999999999                       


Q ss_pred             -----------------cCcchhhHHH---HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccccc
Q psy11265        549 -----------------LSIQCYLGAL---DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDF  607 (945)
Q Consensus       549 -----------------Lsl~~~~~~l---daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~  607 (945)
                                       |+++..+++.   +|||+||+   ||++|.       +||..+.-...||+++ +|+|.++| 
T Consensus        81 ES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~---aL~~a~-------~~v~s~~~~~~LvI~sD~a~~~~~~-  149 (377)
T COG3425          81 ESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTA---ALQAAI-------GWVESGMISYGLVIGADTAQYAPGD-  149 (377)
T ss_pred             CCCcccccchHHHHHHHhCCCCceehhhHHHHHHHHHH---HHHHHH-------HHHHcCCccceEEEeehhhccCCCc-
Confidence                             7777777666   69999995   778787       8888887566799888 99999999 


Q ss_pred             ccccCcccccchhhhH------hhhcccC-cccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhccc
Q psy11265        608 ISATDRSQYEGAEAFA------HIKNLED-TYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLED  679 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l------~i~~~~~-~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~  679 (945)
                        ++|+|||||||||+      -+++++. ++||.|++|||||  .++ .|.++|+||.++|+++++.  ||..|.+..+
T Consensus       150 --~~E~t~GAGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp--~~~~yp~~dg~~s~~~Y~~~~~~--a~~~~~~k~g  223 (377)
T COG3425         150 --ALEYTAGAGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRP--DGQPYPYVDGRFSEPAYFKHVEN--AAKGYMEKTG  223 (377)
T ss_pred             --ccCccCCCceEEEEEccCCCeEEEecCceEEecCCCccccc--CCCcccccCceecHHHHHHHHHH--HHHHHHHHhC
Confidence              99999999999999      3444543 9999999999999  666 9999999999999999995  9999944333


Q ss_pred             ccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHH
Q psy11265        680 TYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVS  759 (945)
Q Consensus       680 ~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~S  759 (945)
                        ...+.+||+|||+||+||+.++++.++.      .               .++|.|++.++++|||+||||+||+|+|
T Consensus       224 --ls~~dfdy~vfH~P~~k~~~ka~k~l~~------~---------------~e~v~~~l~~~~~vGN~YtgS~~L~Las  280 (377)
T COG3425         224 --LSPDDFDYIVFHQPNGKFPKKAAKSLGF------K---------------EEQVKPGLVYPQRIGNTYTGSLLLGLAS  280 (377)
T ss_pred             --CChhhhCeEEecCCCCchHHHHHHHhCc------c---------------HhhcCccchhhhhcCcccchhHHHHHHH
Confidence              2357889999999999999999999840      0               3889999999999999999999999999


Q ss_pred             HhccCCccccCCCcEEEEEecCCCcccccccccccc
Q psy11265        760 LLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH  795 (945)
Q Consensus       760 lL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~  795 (945)
                      +|++++   ++| +|||++|||||+.+++|++++..
T Consensus       281 ~L~~a~---~~G-~rIl~~SYGSGa~s~~fs~~v~~  312 (377)
T COG3425         281 LLDNAK---LPG-DRILLFSYGSGAGSEAFSITVTD  312 (377)
T ss_pred             HHhhcC---CCC-CEEEEEeeCCCcceeEEEEEecc
Confidence            999986   699 99999999999999999999844

>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

Probab=100.00  E-value=1.7e-52  Score=480.87  Aligned_cols=285  Identities=38%  Similarity=0.572  Sum_probs=242.7

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      +|||.+|++|+|..+|+.++|++++|++++||++|+||.+|+|++++||++|||++                        
T Consensus         1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~Te   80 (454)
T TIGR01833         1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTE   80 (454)
T ss_pred             CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence            68999999999999999999999999999999999999999999999999999999                        


Q ss_pred             ------cCcchhh--------------HHH-HHHHHhHHHHHHHHhCccccCCCcceeeecC-Ccc-eEEEec-cccccc
Q psy11265        549 ------LSIQCYL--------------GAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHT-PYC-KLVQKS-LARLAY  604 (945)
Q Consensus       549 ------Lsl~~~~--------------~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~-p~~-kLV~as-~ary~~  604 (945)
                            .+..+++              ..+ .||||++   +||+.|.       +||..+. |.+ .||+++ +++|..
T Consensus        81 S~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t---~AL~~A~-------~~i~s~~~~~~~aLVV~sDia~y~~  150 (454)
T TIGR01833        81 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGT---AALFNAI-------NWIESSSWDGRYALVVAGDIAVYAK  150 (454)
T ss_pred             CCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHH---HHHHHHH-------HHHHcCCcCCCeEEEEEeccccccC
Confidence                  3333333              222 5999999   4777777       8887775 455 588777 999998


Q ss_pred             cccccccCcccccchhhhH-----hhhccc---CccccccccccccccccccccccccccchhchHHhhhhhhHHHhhhh
Q psy11265        605 NDFISATDRSQYEGAEAFA-----HIKNLE---DTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKN  676 (945)
Q Consensus       605 ~~~~~~~E~tqgaGAvA~l-----~i~~~~---~~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~  676 (945)
                      .+    .++|+|+||||||     .| .++   .++++.|++|||||.....+|+|||+||+.||+++++.  +|.+|.+
T Consensus       151 ~~----~~~t~GaGAvAmLv~~~~~~-~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~--~y~~y~~  223 (454)
T TIGR01833       151 GN----ARPTGGAGAVAMLIGPNAPI-VFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDR--CYKSYCK  223 (454)
T ss_pred             CC----eeeccccceEEEEeccCccc-eecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHH--HHHHHHH
Confidence            74    6899999999999     42 244   38999999999999422227999999999999999995  9999944


Q ss_pred             ccc---------ccCCcchHHHHHHhCCCccchHHHHHHhh-------------------------hccccccchhhHHH
Q psy11265        677 LED---------TYFNRDIEQYFMSHNRTEYEGAEAFAHIK-------------------------NLEDTYFNRDIEQY  722 (945)
Q Consensus       677 ~~~---------~~~~~~~~~~~~~H~p~~~m~~~a~~~l~-------------------------~~e~~~~~~~~~~~  722 (945)
                      ..+         .....+.+||++||+||+||+.|+|+.++                         +.+++++++++++.
T Consensus       224 ~~~~a~~~~~~~~~~~~~dfd~~~fH~P~~km~~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (454)
T TIGR01833       224 KIEKQWGKSGGDRKFTLNDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRDLEKA  303 (454)
T ss_pred             HHHHhhhhhccccCCCHhHcCEEeccCCcccHHHHHHHHHHHhhhhhccccccchhhcccchhhccccccccchhhHHHH
Confidence            211         11334677889999999999999998775                         23456778899999


Q ss_pred             hhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccccccccc
Q psy11265        723 FMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH  795 (945)
Q Consensus       723 ~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~  795 (945)
                      +..++++.|.+||+||+.++++||||||||+|++|+|||++++..+|+| +||||||||||+.++||++++.+
T Consensus       304 ~~~~~~~~~~~kv~ps~~~~~~vGN~YtaSlyl~L~Sll~~~~~~~~~g-~ri~~fSYGSG~~se~fs~~v~~  375 (454)
T TIGR01833       304 FMKASKELFDKKTKPSLLVPNQVGNMYTASLYGCLASLLSSKSAQELAG-KRVGMFSYGSGLAASMFSLRVSQ  375 (454)
T ss_pred             HHhhhhhhHHHhhcchhHHHHhcCchhhhHHHHHHHHHHhhCCccccCC-CEEEEEeccCCcceeeEEEEEeC
Confidence            9999999999999999999999999999999999999999886557899 99999999999999999999854

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.

>KOG0545|consensus

Probab=100.00  E-value=7e-52  Score=426.81  Aligned_cols=155  Identities=35%  Similarity=0.701  Sum_probs=147.2

Q ss_pred             EEecCCCcccccccccc--cccccccchhhhhhhhhhhccccc-cccc-----------------hhhhhcc------CC
Q psy11265        777 LFSYGSDNIKALFRRGK--AHMNVWNCEEAGADLKRVAALDST-MLGP-----------------VSSMLKQ------LS  830 (945)
Q Consensus       777 l~s~GsG~~~~~~~~~~--~~~~~~~~~~a~~~l~r~~idds~-~~~p-----------------l~~m~~~------~~  830 (945)
                      +++.|+|..++|.+|++  |||++.++++.+     ++||||| +|+|                 |.+|+++      |+
T Consensus        16 il~~G~g~l~e~~dGTrv~FHfrtl~~~e~~-----tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~d   90 (329)
T KOG0545|consen   16 ILHGGTGELPEFIDGTRVIFHFRTLKCDEER-----TVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWCD   90 (329)
T ss_pred             hccCCCccCccccCCceEEEEEEecccCccc-----ccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhhh
Confidence            68999999999999998  999999999988     9999999 9999                 8999999      99


Q ss_pred             ceeeeecccchHHHHHhhcccCCCCCCCCceeeeec--c---ccChhhHHHHhhcCcceEEEE-----------------
Q psy11265        831 SKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQ--M---HTGYEDLNELLKKSQDLTFTI-----------------  888 (945)
Q Consensus       831 ~~~~~~yp~vs~~~r~~~~~~~~~~~~~~~h~c~~~--~---~~gy~dl~~l~~~~~~l~f~~-----------------  888 (945)
                      ++|+.+||||||||||+++||  ++++|++|||||+  +   ++||+||||||+|||||+|+|                 
T Consensus        91 ~~~~vqYPfvsksLRdia~GK--~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wq  168 (329)
T KOG0545|consen   91 TIHTVQYPFVSKSLRDIAQGK--DPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQ  168 (329)
T ss_pred             hhheeechhHHHHHHHHhcCC--CcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccccc
Confidence            999999999999999999987  4466999999996  2   499999999999999999998                 


Q ss_pred             ----------------------------------------------ecCCChhhHhhhcccccceehhhhhcccccchhH
Q psy11265        889 ----------------------------------------------EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYS  922 (945)
Q Consensus       889 ----------------------------------------------ekp~~~~w~~l~~~~~pl~lny~qc~l~~~~yy~  922 (945)
                                                                    |||||+||++|++|+|||+||||||+|+.|||||
T Consensus       169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye  248 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE  248 (329)
T ss_pred             CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence                                                          4999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccCCCCc
Q psy11265        923 VIEHTTTVLTYDPEGT  938 (945)
Q Consensus       923 v~~h~~~~l~~~~~~~  938 (945)
                      ||||||+||++||+|.
T Consensus       249 vleh~seiL~~~~~nv  264 (329)
T KOG0545|consen  249 VLEHCSEILRHHPGNV  264 (329)
T ss_pred             HHHHHHHHHhcCCchH
Confidence            9999999999999984

>PLN02577 hydroxymethylglutaryl-CoA synthase

Probab=100.00  E-value=8.1e-51  Score=467.50  Aligned_cols=285  Identities=31%  Similarity=0.444  Sum_probs=244.2

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      |++|||.+|++|+|+.+|+.++|++++|++++||++|+||++|+|++++||++|||++                      
T Consensus         2 ~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idlliva   81 (459)
T PLN02577          2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRLEVG   81 (459)
T ss_pred             CCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999                      


Q ss_pred             --------cCcchhhH--------------HH-HHHHHhHHHHHHHHhCccccCCCcceeeecC-Ccc-eEEEec-cccc
Q psy11265        549 --------LSIQCYLG--------------AL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHT-PYC-KLVQKS-LARL  602 (945)
Q Consensus       549 --------Lsl~~~~~--------------~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~-p~~-kLV~as-~ary  602 (945)
                              .+..+++.              .+ .||||++   +||+.|.       +||..+. |++ .||+++ +++|
T Consensus        82 TeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~---~AL~~A~-------~~i~sg~~~~~~aLVV~aD~a~~  151 (459)
T PLN02577         82 SETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGT---AALLNCV-------NWVESSSWDGRYGLVVAADSAVY  151 (459)
T ss_pred             cCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHH---HHHHHHH-------HHHHcCCCCCCeEEEEEechhhc
Confidence                    44444442              22 5999999   4777787       8888775 455 599887 9999


Q ss_pred             cccccccccCcccccchhhhH----hhhcccC---cccccccccccccccccc--ccccccccchhchHHhhhhhhHHHh
Q psy11265        603 AYNDFISATDRSQYEGAEAFA----HIKNLED---TYFNRDIEQYFMSHNLYR--TRLAYNDFISATDRTEYEGAEAFAH  673 (945)
Q Consensus       603 ~~~~~~~~~E~tqgaGAvA~l----~i~~~~~---~~~s~d~~Df~Rp~~~~~--~~~~~g~~s~~~y~~~~~~~~a~~~  673 (945)
                      ..+    ++|+|+|+||+|||    .-..++.   |+++.|++|||||  +++  .+.+||++|..||++++..  +|++
T Consensus       152 ~~~----~~e~t~GdGA~A~lv~~~~~~~l~~~~~g~~~~~~~Df~rP--~~~~~~~~vdG~~s~~~yl~~~~~--~~~~  223 (459)
T PLN02577        152 AEG----PARPTGGAGAVAMLVGPNAPIVFESKYRGSHMAHVYDFYKP--DLASEYPVVDGKLSQTCYLMALDS--CYKR  223 (459)
T ss_pred             cCC----CCCCCCCcceEEEEEccCCCceeecccccccCcccchhccc--CCCCCceEEcchHHHHHHHHHHHH--HHHH
Confidence            988    57999999999999    1123442   7999999999999  444  5899999999999999985  9999


Q ss_pred             hhhcc-c---ccCCcchHHHHHHhCCCccchHHHHHHhh-------------------------hccccccchhhHHHhh
Q psy11265        674 IKNLE-D---TYFNRDIEQYFMSHNRTEYEGAEAFAHIK-------------------------NLEDTYFNRDIEQYFM  724 (945)
Q Consensus       674 ~~~~~-~---~~~~~~~~~~~~~H~p~~~m~~~a~~~l~-------------------------~~e~~~~~~~~~~~~~  724 (945)
                      |.+.. .   .....+.+||++||+||+||+.|+++.++                         ++++++.++++++++.
T Consensus       224 ~~~k~~~~~~~g~~~~d~d~~vfHqP~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (459)
T PLN02577        224 FCEKYEKLEGKQFSISDADYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKVSQ  303 (459)
T ss_pred             HHHHhhcccccCCCHHHcCEEEecCCccchhHHHHHHHhhhhhhhccccccchhhhccccccccchhhccccchHHHHHH
Confidence            93322 1   12334677899999999999999998874                         1456678899999999


Q ss_pred             hcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccccccccc
Q psy11265        725 SHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH  795 (945)
Q Consensus       725 ~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~  795 (945)
                      ..+++.|.+||+||+.++++||||||||+|++|+|||+++. ..|+| |||||||||||+.++||++++.+
T Consensus       304 ~~~~~~~~~kv~ps~~~~~~vGN~YTaSlyl~L~SlL~~~~-~~~~G-~rIg~fSYGSG~~se~fs~~v~~  372 (459)
T PLN02577        304 QVAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKH-SELAG-KRILMFSYGSGLTATMFSLRLHE  372 (459)
T ss_pred             HhhHHHHHHhhccHhHHHHhcCcccchHHHHHHHHHHhhcc-ccCCC-CEEEEEeecCCccceeEEEEEeC
Confidence            99999999999999999999999999999999999998763 35799 99999999999999999999854

>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=100.00  E-value=7.4e-46  Score=372.24  Aligned_cols=154  Identities=34%  Similarity=0.454  Sum_probs=127.0

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      ||++|||++|+||+|++|||++||+++||+||+||++||||++|+||+++||+||||+|||++||+|+++||++||+| +
T Consensus         1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l-~   79 (174)
T PF01154_consen    1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRL-I   79 (174)
T ss_dssp             --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEE-E
T ss_pred             CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEE-E
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             ccCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcc
Q psy11265         85 VESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLK  159 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~  159 (945)
                      ||||          |++|+|||+     ++|+++||+      ..|.+|+||||||||+| |++|++||+  ++.||+++
T Consensus        80 vgTE----------S~vD~sKs~~t~v~~ll~~s~~~------~~~~~e~k~ACygGTaA-L~~a~~~v~--s~~~~g~~  140 (174)
T PF01154_consen   80 VGTE----------SGVDKSKSISTYVHQLLGLSGNP------DCRGVEMKQACYGGTAA-LQNAVNWVA--SSPWDGRK  140 (174)
T ss_dssp             EE-S----------S-SBSSS-HHHHHHHHTTTTT-S------SSEEEEEESGGGHHHHH-HHHHHHHHC--STTSTTEE
T ss_pred             Eecc----------ccccccccHHHHHHHHhCcCCCC------ceeeeehhhhhHHHHHH-HHHHHHHHh--cCCCCCCe
Confidence            9999          777777776     667776654      23678999999999999 999999998  77899999


Q ss_pred             eee-ecccccccccCCCCCCC
Q psy11265        160 TLV-TKLSDVQDRLDARRPVP  179 (945)
Q Consensus       160 ~LV-asdia~y~~~~~~~~t~  179 (945)
                      +|| +||||+|++++ .||||
T Consensus       141 aLVVasDiA~y~~g~-~e~Tq  160 (174)
T PF01154_consen  141 ALVVASDIARYDLGS-AEPTQ  160 (174)
T ss_dssp             EEEEEEEEE--STTT-TGGG-
T ss_pred             EEEEeccccccCCCC-ccccc
Confidence            999 99999999964 59998

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....

>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

Probab=100.00  E-value=4e-42  Score=379.78  Aligned_cols=225  Identities=16%  Similarity=0.147  Sum_probs=198.4

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |.|||++|.+|+|++||+++||++++|+||+|+++||||.+|+|++.+||+||||+|||+++|+|+++||.+||+| +||
T Consensus         1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v-~vg   79 (377)
T COG3425           1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAV-IVG   79 (377)
T ss_pred             CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceE-EEe
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      ||          |++|++|+...+...   +++.+++.+++|+++|||+||+| |++|+.||.  ++.+  +++|| ++|
T Consensus        80 TE----------S~~d~~K~~at~v~~---~lg~~~~~~~~d~~~AC~agT~a-L~~a~~~v~--s~~~--~~~LvI~sD  141 (377)
T COG3425          80 SE----------SGPDAVKPTATIVAE---ALGLNPSARAADVEFACYAGTAA-LQAAIGWVE--SGMI--SYGLVIGAD  141 (377)
T ss_pred             cC----------CCcccccchHHHHHH---HhCCCCceehhhHHHHHHHHHHH-HHHHHHHHH--cCCc--cceEEEeeh
Confidence            99          889999888544432   44445666999999999999999 999999997  5554  49999 999


Q ss_pred             cccccccCCCCCCC------------cceeeccccccccccccCcccCCCCCCccccCcc----hhHHHHHHHHHHHHhh
Q psy11265        166 SDVQDRLDARRPVP------------PAEFTRILAAKKENLHKYPFRSETPPGEYLFDGS----YYLESIDDFHRRHYKK  229 (945)
Q Consensus       166 ia~y~~~~~~~~t~------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~~~vdG~----~YL~~ld~~~~~y~~r  229 (945)
                      +|.|..++..|+||            |.......+...||.|++|||||.++.++.|||.    +|+++++.+|+.|.+|
T Consensus       142 ~a~~~~~~~~E~t~GAGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k  221 (377)
T COG3425         142 TAQYAPGDALEYTAGAGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEK  221 (377)
T ss_pred             hhccCCCcccCccCCCceEEEEEccCCCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHH
Confidence            99999999999998            2222223334449999999999999988899997    9999999999999999


Q ss_pred             hccCCCCCCccccceee-eecCCCcccccc
Q psy11265        230 YEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       230 ~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .+.        ..++++ ++||.|+.||..
T Consensus       222 ~gl--------s~~dfdy~vfH~P~~k~~~  243 (377)
T COG3425         222 TGL--------SPDDFDYIVFHQPNGKFPK  243 (377)
T ss_pred             hCC--------ChhhhCeEEecCCCCchHH
Confidence            865        346777 999999999975

>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

Probab=100.00  E-value=5.1e-39  Score=365.74  Aligned_cols=291  Identities=26%  Similarity=0.348  Sum_probs=231.3

Q ss_pred             cccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-------------------------
Q psy11265        494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-------------------------  548 (945)
Q Consensus       494 vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-------------------------  548 (945)
                      |||.+|++|+|+.+|+.++|++++|++++||++|+|+.+|++++++||++|||++                         
T Consensus         1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a~~~~Id~li~~t~s~~   80 (379)
T TIGR01835         1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRNDKQKIDMVIFGTESGI   80 (379)
T ss_pred             CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhCCHhhCCEEEEEeCCCC
Confidence            7999999999999999999999999999999999999999999999999999999                         


Q ss_pred             -------------cCcchhhH--HH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccccccccc
Q psy11265        549 -------------LSIQCYLG--AL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFISAT  611 (945)
Q Consensus       549 -------------Lsl~~~~~--~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~~~~  611 (945)
                                   |+++..+.  .+ .+|++++.   ||..|.       +|+..++..+.||+++ +++|...+   ++
T Consensus        81 ~~~~s~a~~v~~~Lgl~~~~~~~dv~~aC~gg~~---aL~~A~-------~~i~s~~~~~aLVv~~D~a~~~~~~---~~  147 (379)
T TIGR01835        81 DQSKAAAVYVHGLLGLQPFCRSFELKQACYGATA---ALQMAK-------GHVALSPDRKVLVIASDIAKYGLES---PG  147 (379)
T ss_pred             CCCCCHHHHHHHHhCCCCCceEEEeccccHHHHH---HHHHHH-------HHHHcCCCCeEEEEEeehhhcccCC---CC
Confidence                         66643332  33 69999994   777776       7787776656788777 99998776   78


Q ss_pred             CcccccchhhhH-----hhhccc--Ccccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhcccccCC
Q psy11265        612 DRSQYEGAEAFA-----HIKNLE--DTYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFN  683 (945)
Q Consensus       612 E~tqgaGAvA~l-----~i~~~~--~~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~  683 (945)
                      ++++|+||+|||     .|+.++  .+.++.|++|||||  .++ .+.++|++|..+|++++.  .+++++.+..+  ..
T Consensus       148 ~~~~GdGA~A~Ll~~~~~i~~~~~~~~~~t~~~~df~~p--~~~~~~~v~g~~s~~~y~~~~~--~~~~~~l~~~g--~~  221 (379)
T TIGR01835       148 EPTQGAGAVAMLVSADPKLLAINEDSVLYTDDIMDFWRP--NYSTTALVDGQYSNEQYLNAFE--NAWNDYAKRTG--LS  221 (379)
T ss_pred             CccccCccEEEEEecCCCeeEEeccceeeecCCCCccCC--CCCCceeECcHHHHHHHHHHHH--HHHHHHHHHhC--CC
Confidence            999999999999     566554  37889999999999  445 788999999999999997  49998843222  33


Q ss_pred             cchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhcc
Q psy11265        684 RDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQ  763 (945)
Q Consensus       684 ~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~  763 (945)
                      .+..+||+||+||++|+.++++.+++.-. .           ...+.+...+++|+.+.+++||+||||+|++|+++|++
T Consensus       222 ~~did~~i~H~p~~~~~~k~~~~~l~~~~-~-----------~~~~~~~~~~~~s~~~~~~~GN~~sas~~l~L~~~l~~  289 (379)
T TIGR01835       222 LADFAAFCFHVPFTKMGLKALRHILKKNY-E-----------DEDESVQNAYLESIIYNREVGNLYTGSLYLGLASLLEN  289 (379)
T ss_pred             HHHcCEEEECCCCCcHHHHHHHHHHhhcc-c-----------ccHHHHHHHhhhhhhhhhhcCchHhHHHHHHHHHHHHh
Confidence            45668899999999999999998741100 0           01345566678899999999999999999999999987


Q ss_pred             CCccccCCCcEEEEEecCCCccccccccccccc--ccccchhhhhhh-hhhhccccc
Q psy11265        764 TPWERLQGMSRIGLFSYGSDNIKALFRRGKAHM--NVWNCEEAGADL-KRVAALDST  817 (945)
Q Consensus       764 ~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~~--~~~~~~~a~~~l-~r~~idds~  817 (945)
                      .. ...+| +||+|+|||||+.++||++++.+-  ..++...-++.| +|..+++.+
T Consensus       290 ~~-~~~~G-d~ill~s~GsG~~ae~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  344 (379)
T TIGR01835       290 AF-EDTTG-DKIGLFSYGSGAVAEFFSGTLVAGYRDHLKKERHLALLKNRTNLSYAE  344 (379)
T ss_pred             cc-cCCCC-CEEEEEEecCCcceeeEEEEEcccHHHHHhcccHHHHHhCCccCCHHH
Confidence            51 23499 999999999999999999998441  111111123445 666666655

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.

>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

Probab=100.00  E-value=8.7e-38  Score=359.40  Aligned_cols=228  Identities=40%  Similarity=0.588  Sum_probs=192.7

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      ||||++|++|+|+.+|++++|++++|+|++||++||||.+|+||+++||++|||++||++||++.+++|++|++| +|+|
T Consensus         1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~L-iv~T   79 (454)
T TIGR01833         1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRL-EVGT   79 (454)
T ss_pred             CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             Ccccccccccccchhhhhhcc-----cccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee
Q psy11265         88 PEEYEQESWQLTEAEKLASIP-----KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV  162 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~-----~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV  162 (945)
                      |          |+++.+|+..     +|.+.|+.      -.+++|+++||+|+|.| |+.|..||+  ++.+|++++||
T Consensus        80 e----------S~~d~sps~a~~v~~lL~~lG~~------~~~~fDi~~AC~G~t~A-L~~A~~~i~--s~~~~~~~aLV  140 (454)
T TIGR01833        80 E----------TIIDKSKSVKTVLMQLFEESGNT------DVEGIDTTNACYGGTAA-LFNAINWIE--SSSWDGRYALV  140 (454)
T ss_pred             C----------CCCCCCCchHHHHHHHHHhcCCC------CceEEeccccchhHHHH-HHHHHHHHH--cCCcCCCeEEE
Confidence            9          8888887663     33332321      12789999999999999 999999997  66678999999


Q ss_pred             -ecccccccccCCCCCCC------------c-ceeecc-ccccccccccCcccCCCCCC-ccccCcc----hhHHHHHHH
Q psy11265        163 -TKLSDVQDRLDARRPVP------------P-AEFTRI-LAAKKENLHKYPFRSETPPG-EYLFDGS----YYLESIDDF  222 (945)
Q Consensus       163 -asdia~y~~~~~~~~t~------------P-~~~~~~-~~~~~~~~~~~Df~rP~~~~-~~~vdG~----~YL~~ld~~  222 (945)
                       ++|+++|+..+ .++|+            | .+|+.. .+  .++.|++|||||.+++ +++|||+    ||+++|+++
T Consensus       141 V~sDia~y~~~~-~~~t~GaGAvAmLv~~~~~~~~~~~~~~--~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~  217 (454)
T TIGR01833       141 VAGDIAVYAKGN-ARPTGGAGAVAMLIGPNAPIVFERGLRG--SHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRC  217 (454)
T ss_pred             EEeccccccCCC-eeeccccceEEEEeccCccceecCccce--EEEeecccccCCCCCCcccccCCccCHHHHHHHHHHH
Confidence             99999999965 56665            3 345542 34  4899999999999977 6899997    999999999


Q ss_pred             HHHHHhhhccCCC---CCCccccceee-eecCCCcccccc
Q psy11265        223 HRRHYKKYEAGTA---WPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       223 ~~~y~~r~~~~~~---~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      |.+|.++.+.-..   ......+++++ ++||.||.||..
T Consensus       218 y~~y~~~~~~a~~~~~~~~~~~~~dfd~~~fH~P~~km~~  257 (454)
T TIGR01833       218 YKSYCKKIEKQWGKSGGDRKFTLNDFDYMVFHSPYCKLVQ  257 (454)
T ss_pred             HHHHHHHHHHhhhhhccccCCCHhHcCEEeccCCcccHHH
Confidence            9999888652000   00124467788 999999999976

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.

>PLN02577 hydroxymethylglutaryl-CoA synthase

Probab=100.00  E-value=3.3e-36  Score=346.75  Aligned_cols=228  Identities=36%  Similarity=0.549  Sum_probs=196.1

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      .|++|||.+|++|+|+.+|+.+||++++|++++||++||||.+|+||+++||++|||++||+++|++.+++|++|++| +
T Consensus         1 ~~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idll-i   79 (459)
T PLN02577          1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRL-E   79 (459)
T ss_pred             CCCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-E
Confidence            389999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             ccCCcccccccccccchhhhhhccc-----ccc--cCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCC
Q psy11265         85 VESPEEYEQESWQLTEAEKLASIPK-----LKE--DGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDT  157 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~~~-----l~~--~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~  157 (945)
                      |+||          |+.|.+++...     +..  ..++        +++|+++||+|+|.| |+.|..||+  ++.+|+
T Consensus        80 vaTe----------T~~d~~ps~A~~v~~ll~~LG~~~~--------~afDi~~AC~G~~~A-L~~A~~~i~--sg~~~~  138 (459)
T PLN02577         80 VGSE----------TVIDKSKSIKTFLMQLFEESGNTDI--------EGVDSTNACYGGTAA-LLNCVNWVE--SSSWDG  138 (459)
T ss_pred             EEcC----------CCCCCCCchHHHHHHHHHHhCCCCc--------EEeehhhhhHHHHHH-HHHHHHHHH--cCCCCC
Confidence            9999          88888888642     333  2334        789999999999999 999999997  666788


Q ss_pred             cceee-ecccccccccCCCCCCC-------------cceeeccccccccccccCcccCCCCCCc-cccCcc----hhHHH
Q psy11265        158 LKTLV-TKLSDVQDRLDARRPVP-------------PAEFTRILAAKKENLHKYPFRSETPPGE-YLFDGS----YYLES  218 (945)
Q Consensus       158 ~~~LV-asdia~y~~~~~~~~t~-------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~-~~vdG~----~YL~~  218 (945)
                      +++|| +||+++|... +.++|+             |.+|+.... ..++.|++|||||+++.+ +.|||+    +|+++
T Consensus       139 ~~aLVV~aD~a~~~~~-~~e~t~GdGA~A~lv~~~~~~~l~~~~~-g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~  216 (459)
T PLN02577        139 RYGLVVAADSAVYAEG-PARPTGGAGAVAMLVGPNAPIVFESKYR-GSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMA  216 (459)
T ss_pred             CeEEEEEechhhccCC-CCCCCCCcceEEEEEccCCCceeecccc-cccCcccchhcccCCCCCceEEcchHHHHHHHHH
Confidence            99999 9999999986 667776             234443221 138899999999999876 679997    99999


Q ss_pred             HHHHHHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        219 IDDFHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       219 ld~~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      ++++|++|.++.+. .+ ...+.+++++ ++||.||.||..
T Consensus       217 ~~~~~~~~~~k~~~-~~-~~g~~~~d~d~~vfHqP~~km~~  255 (459)
T PLN02577        217 LDSCYKRFCEKYEK-LE-GKQFSISDADYFVFHAPYNKLVQ  255 (459)
T ss_pred             HHHHHHHHHHHhhc-cc-ccCCCHHHcCEEEecCCccchhH
Confidence            99999999998754 11 1234567788 999999999986

>KOG1393|consensus

Probab=100.00  E-value=2.5e-34  Score=310.93  Aligned_cols=291  Identities=35%  Similarity=0.517  Sum_probs=254.6

Q ss_pred             CCCCccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------
Q psy11265        487 SHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------  548 (945)
Q Consensus       487 t~~~~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------  548 (945)
                      ...||.+|||.+|++|+|..|++|+||++++|++.||||+||||.+|+||+++|||+||++|                  
T Consensus         5 ~~~~p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGR   84 (462)
T KOG1393|consen    5 ASNWPKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGR   84 (462)
T ss_pred             cccCccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcce
Confidence            45689999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ------------cCcchhhHHH---------------HHHHHhHHHHHHHHhCccccCCCcceeeecC-Ccc-eEEEe-c
Q psy11265        549 ------------LSIQCYLGAL---------------DACYQGYRAKAAKLTGKELSLGDFDAVLFHT-PYC-KLVQK-S  598 (945)
Q Consensus       549 ------------Lsl~~~~~~l---------------daCy~~~~~~~al~~a~~~~l~~~~~v~~~~-p~~-kLV~a-s  598 (945)
                                  +|+.+++..+               +|||||++   ||.+|.       +||.+.+ .++ .||+. +
T Consensus        85 LEVGTETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGta---ALfnav-------nWiESssWDGr~aivV~gD  154 (462)
T KOG1393|consen   85 LEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTA---ALFNAV-------NWIESSSWDGRYAIVVCGD  154 (462)
T ss_pred             EEecceeccccchHHHHHHHHHhhhcCCCccccccccccccccHH---HHHHHh-------hhhhhcccCCceeEEEEee
Confidence                        7777777665               49999995   777777       8998888 565 57755 5


Q ss_pred             cccccccccccccCcccccchhhhH----hhhcccC---ccccccccccccccccccccccccccchhchHHhhhhhhHH
Q psy11265        599 LARLAYNDFISATDRSQYEGAEAFA----HIKNLED---TYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAF  671 (945)
Q Consensus       599 ~ary~~~~~~~~~E~tqgaGAvA~l----~i~~~~~---~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~  671 (945)
                      ||-|.-.    +.-+|.||||||||    +...++.   +++-....|||+|.-.+-.|+|||++|++||+.|++  .+|
T Consensus       155 IAvY~~G----~aRpTGGAgAVAmLIgPnApi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald--~cY  228 (462)
T KOG1393|consen  155 IAVYAKG----NARPTGGAGAVAMLIGPNAPIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALD--RCY  228 (462)
T ss_pred             EEEecCC----CCCCCCCcceEEEEEcCCCceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHH--HHH
Confidence            9999887    67799999999999    5556664   889999999999954445999999999999999998  599


Q ss_pred             Hhh-hhcccc---cCC--cchHHHHHHhCCCccchHHHHHHhh---------------------hccccccchhhHHHhh
Q psy11265        672 AHI-KNLEDT---YFN--RDIEQYFMSHNRTEYEGAEAFAHIK---------------------NLEDTYFNRDIEQYFM  724 (945)
Q Consensus       672 ~~~-~~~~~~---~~~--~~~~~~~~~H~p~~~m~~~a~~~l~---------------------~~e~~~~~~~~~~~~~  724 (945)
                      ..| +++..+   ...  .+.|||++||.||+||+.|.+..++                     +++++|++|+++|+++
T Consensus       229 ~~~~kK~~~~~~~~~~~~l~~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~~~~~~~~~~~~~l~~s~~dr~~ek~~~  308 (462)
T KOG1393|consen  229 TVYRKKIAAQWQKSGSDNLNSFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQLPESAGLESTLKLDESYTDRDLEKAFI  308 (462)
T ss_pred             HHHHHHHHHHhccccCcccccCCeEEEeCchhhhHHHHHHHhhhhhhhhccccccccccccccccccccccchHHHHHHH
Confidence            999 332221   111  2478999999999999999766543                     4567889999999999


Q ss_pred             hcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccccccccc
Q psy11265        725 SHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKA  794 (945)
Q Consensus       725 ~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~  794 (945)
                      +++++.|.+|+.||+.+++++|||||+|+|++|+|||.....++|.| +||||||||||.+++||++.+.
T Consensus       309 ~~s~~~~~~Kt~~sl~~~~~~GNmYTaSly~~l~sll~~~~~d~l~G-krig~FSYGSGlAAs~fs~~v~  377 (462)
T KOG1393|consen  309 KISKPIFKKKTKPSLLAPRRNGNMYTASLYASLASLLSAVPADELAG-KRIGMFSYGSGLAASMFSLRVT  377 (462)
T ss_pred             HHhHHHHHhhccceeEeeccCCccccHHHHHHHHHHHhccchhhhhc-cEEEEEeecCcchhheEEEEec
Confidence            99999999999999999999999999999999999999987789999 9999999999999999999873

>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=99.98  E-value=4.7e-34  Score=309.86  Aligned_cols=161  Identities=29%  Similarity=0.412  Sum_probs=125.0

Q ss_pred             cccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhcc-------cccCCcchHHHHHHhCCCccchHH
Q psy11265        631 TYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLE-------DTYFNRDIEQYFMSHNRTEYEGAE  702 (945)
Q Consensus       631 ~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~H~p~~~m~~~  702 (945)
                      |+|+.|+.|||||+ ..+ .|+|||++|++||+++++.  +|..|++..       +.....+.+||++||.||+||+.|
T Consensus         9 ~~~m~~~yDFyKP~-~~seyP~VDG~~S~~~Yl~ald~--~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py~klv~K   85 (282)
T PF08540_consen    9 GSHMEHVYDFYKPD-LSSEYPVVDGKLSIQCYLDALDK--CYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPYCKLVQK   85 (282)
T ss_dssp             EEEE----SEE-BT-TT-SS-EE-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTSST--GGG-SEEEE--SSHHHHHH
T ss_pred             eeehhhchhccCCC-CCCCCcEEchHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCccccceEEEecCchHHHHH
Confidence            89999999999993 334 7999999999999999994  999994422       234556788999999999999999


Q ss_pred             HHHHhh--------------------------hccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHH
Q psy11265        703 AFAHIK--------------------------NLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGC  756 (945)
Q Consensus       703 a~~~l~--------------------------~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~  756 (945)
                      ++..++                          +.+++++++++++++.+.+++.|++||+||+.++++||||||||||++
T Consensus        86 a~~rl~~~D~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~dr~lek~~~~~s~~~~~~kv~psl~~~~~vGN~YTaSly~~  165 (282)
T PF08540_consen   86 AFARLLYNDFLRNPSSEEFEEIDAELAPFRDLPLEESYFDRDLEKAFMKASKEDFERKVEPSLLYSRQVGNMYTASLYLG  165 (282)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHCCHGGGTT--GGGHCTHHHHHHHHHHHHHHHHHHHCHHHTHHHHHHB--GGGHHHHH
T ss_pred             HHHHHHHhhhhhccccccccccchhhhhhccCCcccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCceehHHHHHH
Confidence            977543                          234566789999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCccccCCCcEEEEEecCCCcccccccccccc
Q psy11265        757 LVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH  795 (945)
Q Consensus       757 L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~  795 (945)
                      |+|||.+...++|.| +||||||||||+.++||++++..
T Consensus       166 L~SlL~~~~~~~l~G-krI~~FSYGSG~~s~~fs~~v~~  203 (282)
T PF08540_consen  166 LASLLSSAEADDLAG-KRIGMFSYGSGLASEFFSGRVQP  203 (282)
T ss_dssp             HHHHHHHHHSCHHTT--EEEEEEEETTTEEEEEEEEE-T
T ss_pred             HHHHhhccCccccCC-CEEEEEEecCCcceeEEEEEEeC
Confidence            999996554568899 99999999999999999999843

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....

>KOG0545|consensus

Probab=99.97  E-value=1.4e-31  Score=276.98  Aligned_cols=197  Identities=48%  Similarity=0.853  Sum_probs=180.5

Q ss_pred             CeEEEccCccccc-cccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcE
Q psy11265        268 GKYTIGLGQAKMG-FCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEI  346 (945)
Q Consensus       268 gk~~~~~g~~~~~-~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~  346 (945)
                      -|.++..|.|.++ |+        .|.+|++||.....++.++++|+||..|+|+++++|+.+.++.||..|.+|+++|+
T Consensus        13 ~Kril~~G~g~l~e~~--------dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev   84 (329)
T KOG0545|consen   13 KKRILHGGTGELPEFI--------DGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEV   84 (329)
T ss_pred             hHhhccCCCccCcccc--------CCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence            4778888877654 33        57899999999998888999999999999999999999999999999999999999


Q ss_pred             EEEEecCCccccCCccchhhHhhhcccCCCCccccccccccc-c----cccccccccccCCCCcEEEEEEEEeeeCCchh
Q psy11265        347 SKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQ-M----HTGYEDLNELLKKSQDLTFTIELLQVESPEEY  421 (945)
Q Consensus       347 a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~-m----~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y  421 (945)
                      +.|.|....+..|+.+++.||++.. |++..+ ...||||+. |    ..|+.+++++....++|+|.|||++|+.|++|
T Consensus        85 aqF~~d~~~~vqYPfvsksLRdia~-GK~p~e-~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qY  162 (329)
T KOG0545|consen   85 AQFWCDTIHTVQYPFVSKSLRDIAQ-GKDPTE-WHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQY  162 (329)
T ss_pred             HHhhhhhhheeechhHHHHHHHHhc-CCCcch-hhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhh
Confidence            9999999998899999999999976 334332 467999994 4    39999999999999999999999999999999


Q ss_pred             hhhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHHhhhhcc
Q psy11265        422 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQ  474 (945)
Q Consensus       422 ~ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~~~~~e  474 (945)
                      .+++|+|+.+||+.+++.++++||.+||.|+|++|+.+|..|+.+|++++++|
T Consensus       163 q~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE  215 (329)
T KOG0545|consen  163 QRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE  215 (329)
T ss_pred             ccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999997

>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

Probab=99.96  E-value=1.8e-29  Score=287.59  Aligned_cols=216  Identities=18%  Similarity=0.209  Sum_probs=183.7

Q ss_pred             cceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCC
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESP   88 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te   88 (945)
                      |||++|++|+|+.||++++|++++|++++||++|+||++|+|+++.||+++||++||+++|++.  +|++|+.| +|+|+
T Consensus         1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a--~~~~Id~l-i~~t~   77 (379)
T TIGR01835         1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN--DKQKIDMV-IFGTE   77 (379)
T ss_pred             CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC--CHhhCCEE-EEEeC
Confidence            7999999999999999999999999999999999999999999999999999999999999996  89999999 89999


Q ss_pred             cccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-
Q psy11265         89 EEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-  162 (945)
Q Consensus        89 ~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-  162 (945)
                                |+.+.+++.     ..|+.++++        +.+++++||+|++.| |..|..||+  +  ++.+++|| 
T Consensus        78 ----------s~~~~~~s~a~~v~~~Lgl~~~~--------~~~dv~~aC~gg~~a-L~~A~~~i~--s--~~~~~aLVv  134 (379)
T TIGR01835        78 ----------SGIDQSKAAAVYVHGLLGLQPFC--------RSFELKQACYGATAA-LQMAKGHVA--L--SPDRKVLVI  134 (379)
T ss_pred             ----------CCCCCCCCHHHHHHHHhCCCCCc--------eEEEeccccHHHHHH-HHHHHHHHH--c--CCCCeEEEE
Confidence                      666665554     556666666        789999999999999 999999996  3  35689999 


Q ss_pred             ecccccccccCCCCCCC------------cceeeccccccccccccCcccCCCCCCccccCcc----hhHHHHHHHHHHH
Q psy11265        163 TKLSDVQDRLDARRPVP------------PAEFTRILAAKKENLHKYPFRSETPPGEYLFDGS----YYLESIDDFHRRH  226 (945)
Q Consensus       163 asdia~y~~~~~~~~t~------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~~~vdG~----~YL~~ld~~~~~y  226 (945)
                      ++|+++|....+.++++            |.+++.......++.+++|||||.++.++.|+|+    +|++++.++|++|
T Consensus       135 ~~D~a~~~~~~~~~~~~GdGA~A~Ll~~~~~i~~~~~~~~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~  214 (379)
T TIGR01835       135 ASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAINEDSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDY  214 (379)
T ss_pred             EeehhhcccCCCCCccccCccEEEEEecCCCeeEEeccceeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHH
Confidence            99999998766666665            4333221222247889999999999877889997    8999999999999


Q ss_pred             HhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        227 YKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       227 ~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .++.+.        ..++++ +++|.|+.+|..
T Consensus       215 l~~~g~--------~~~did~~i~H~p~~~~~~  239 (379)
T TIGR01835       215 AKRTGL--------SLADFAAFCFHVPFTKMGL  239 (379)
T ss_pred             HHHhCC--------CHHHcCEEEECCCCCcHHH
Confidence            988743        456677 999999999853

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.

>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=99.95  E-value=3.7e-30  Score=259.03  Aligned_cols=120  Identities=40%  Similarity=0.527  Sum_probs=95.8

Q ss_pred             CccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc---------------------
Q psy11265        490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT---------------------  548 (945)
Q Consensus       490 ~~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~---------------------  548 (945)
                      ||++|||++|++|+|++||++++|+++||+||+||++||||++|+||+++||+||||+|                     
T Consensus         1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~v   80 (174)
T PF01154_consen    1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRLIV   80 (174)
T ss_dssp             --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEE
T ss_pred             CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999                     


Q ss_pred             -------------------cCc--chhhHHH---HHHHHhHHHHHHHHhCccccCCCcceeeecC-Ccce-EEEec-ccc
Q psy11265        549 -------------------LSI--QCYLGAL---DACYQGYRAKAAKLTGKELSLGDFDAVLFHT-PYCK-LVQKS-LAR  601 (945)
Q Consensus       549 -------------------Lsl--~~~~~~l---daCy~~~~~~~al~~a~~~~l~~~~~v~~~~-p~~k-LV~as-~ar  601 (945)
                                         |++  +|+++.+   +|||+||+   ||++|.       +||.++. |+++ ||++| +||
T Consensus        81 gTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTa---AL~~a~-------~~v~s~~~~g~~aLVVasDiA~  150 (174)
T PF01154_consen   81 GTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTA---ALQNAV-------NWVASSPWDGRKALVVASDIAR  150 (174)
T ss_dssp             E-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHH---HHHHHH-------HHHCSTTSTTEEEEEEEEEEE-
T ss_pred             eccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHH---HHHHHH-------HHHhcCCCCCCeEEEEeccccc
Confidence                               444  5555444   69999995   888888       9999986 7665 99887 999


Q ss_pred             ccccccccccCcccccchhhhH
Q psy11265        602 LAYNDFISATDRSQYEGAEAFA  623 (945)
Q Consensus       602 y~~~~~~~~~E~tqgaGAvA~l  623 (945)
                      |+.++    .|+|||+||||||
T Consensus       151 y~~g~----~e~TqGAGAVAmL  168 (174)
T PF01154_consen  151 YDLGS----AEPTQGAGAVAML  168 (174)
T ss_dssp             -STTT----TGGG-EEEEEEEE
T ss_pred             cCCCC----ccccccceeEEEE
Confidence            99885    4999999999997

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....

>KOG0544|consensus

Probab=99.94  E-value=6.7e-27  Score=208.51  Aligned_cols=94  Identities=31%  Similarity=0.483  Sum_probs=87.1

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      ..|.+|++|+|||+|.|  .||++||||++|++||.|+||.|+||+|||+++..|.+||+++++|.|+|  |||.     
T Consensus        15 tfpK~Gqtvt~hYtg~L--~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~--aYG~-----   85 (108)
T KOG0544|consen   15 TFPKKGQTVTVHYTGTL--QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY--AYGP-----   85 (108)
T ss_pred             ccCCCCCEEEEEEEeEe--cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc--ccCC-----
Confidence            68999999999999999  69999999999999999999999999999999999999999999999999  9998     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                              .|.+                   ..||||++|+|||||++++
T Consensus        86 --------~G~p-------------------~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   86 --------RGHP-------------------GGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             --------CCCC-------------------CccCCCcEEEEEEEEEecC
Confidence                    2321                   3599999999999999873

>KOG0543|consensus

Probab=99.92  E-value=4.3e-25  Score=244.60  Aligned_cols=163  Identities=27%  Similarity=0.392  Sum_probs=137.9

Q ss_pred             cccccccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccc-cchhhhHHHH
Q psy11265        259 LEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGK-KFKLEVWETL  337 (945)
Q Consensus       259 le~~d~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~-g~vI~G~e~~  337 (945)
                      ++.+|+ ..-|.++..|.+.       ..+|..|..|+|||.|++  .++ +|+++.   ..|+|.+|+ ..||.|||.+
T Consensus        79 ~el~Dg-~iiKriir~G~gd-------~~~P~~g~~V~v~~~G~~--~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~a  144 (397)
T KOG0543|consen   79 VELLDG-GIIKRIIREGEGD-------YSRPNKGAVVKVHLEGEL--EDG-VFDQRE---LRFEFGEGEDIDVIEGLEIA  144 (397)
T ss_pred             ecccCC-ceEEeeeecCCCC-------CCCCCCCcEEEEEEEEEE--CCc-ceeccc---cceEEecCCccchhHHHHHH
Confidence            333344 2347777777653       358999999999999999  455 998764   459999999 6899999999


Q ss_pred             HhcCCCCcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        338 VKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       338 v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                      |..|++||++.|+|+|+|  |||..            .+.                   .+.||||++|.|||||++|+.
T Consensus       145 l~~M~~GE~a~v~i~~~Y--ayG~~------------~~~-------------------~p~IPPnA~l~yEVeL~~f~~  191 (397)
T KOG0543|consen  145 LRMMKVGEVALVTIDPKY--AYGEE------------GGE-------------------PPLIPPNATLLYEVELLDFEL  191 (397)
T ss_pred             HHhcCccceEEEEeCccc--ccCCC------------CCC-------------------CCCCCCCceEEEEEEEEeeec
Confidence            999999999999999999  99951            111                   146999999999999999993


Q ss_pred             CchhhhhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHHhhh
Q psy11265        418 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM  471 (945)
Q Consensus       418 p~~y~ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~~~  471 (945)
                      .   ..+.|.|..+||+++|.++|++||.+||+|+|..|+.+|+||+.+|++..
T Consensus       192 ~---~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~  242 (397)
T KOG0543|consen  192 K---EDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR  242 (397)
T ss_pred             C---cccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc
Confidence            2   68999999999999999999999999999999999999999999998643

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.2e-22  Score=207.37  Aligned_cols=95  Identities=27%  Similarity=0.411  Sum_probs=86.4

Q ss_pred             cCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCcc
Q psy11265        283 SDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFV  362 (945)
Q Consensus       283 ~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~  362 (945)
                      .|.|..|..|++|+|||+|+|  .||++||||++|++|+.|.||  +||+||++||..|++|++++|+|||++  |||. 
T Consensus       110 ~G~G~~~~~~~~V~vhY~G~l--~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP~~l--aYG~-  182 (205)
T COG0545         110 AGDGAAPKKGDTVTVHYTGTL--IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPPEL--AYGE-  182 (205)
T ss_pred             ccCCCCCCCCCEEEEEEEEec--CCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeCchh--ccCc-
Confidence            345678999999999999999  699999999999999999998  999999999999999999999999999  9998 


Q ss_pred             chhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        363 SKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       363 ~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                                  +|.+                   ..||||++|+|||||++|
T Consensus       183 ------------~g~~-------------------g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         183 ------------RGVP-------------------GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             ------------CCCC-------------------CCCCCCCeEEEEEEEEec
Confidence                        3321                   239999999999999987

>KOG0549|consensus

Probab=99.87  E-value=5.4e-22  Score=198.49  Aligned_cols=94  Identities=28%  Similarity=0.432  Sum_probs=87.0

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      +...||++++||+|.|  +||++||||+.|++|++|+||.|+||+|||+++.+|++||+++++|||++  +||.      
T Consensus        84 kak~GD~l~~HY~g~l--eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L--gYG~------  153 (188)
T KOG0549|consen   84 KAKKGDTLHVHYTGSL--EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL--GYGE------  153 (188)
T ss_pred             cccCCCEEEEEEEEEe--cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc--cCcc------
Confidence            4568999999999988  69999999999999999999999999999999999999999999999999  9998      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             +|++                   .-||++++|+|+|||+++.+
T Consensus       154 -------~G~~-------------------~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  154 -------RGAP-------------------PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             -------CCCC-------------------CCCCCCeeEEEEEEEEEeec
Confidence                   4443                   12999999999999999987

>PRK04262 hypothetical protein; Provisional

Probab=99.77  E-value=4.9e-19  Score=199.81  Aligned_cols=280  Identities=20%  Similarity=0.165  Sum_probs=194.6

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+|+|.+++.|+|..+++.++|++..+.+++++...+|..++.+++++|+..+||+.                       
T Consensus         1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~s   80 (347)
T PRK04262          1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGS   80 (347)
T ss_pred             CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence            578999999999999999999999999999989889999999999999999999998                       


Q ss_pred             -----------------cCcc--hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccccc
Q psy11265        549 -----------------LSIQ--CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDF  607 (945)
Q Consensus       549 -----------------Lsl~--~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~  607 (945)
                                       |++.  +....+ .+|.++..   ++..|.       .++..+.....||+.+ .+++...+ 
T Consensus        81 ~~~~~~~p~~a~~v~~~Lgl~~~~~~~dv~~~C~~~~~---aL~~A~-------~~i~sg~~~~aLVv~~e~~~~~~~~-  149 (347)
T PRK04262         81 ESHPYAVKPTATIVAEALGATPDLTAADLEFACKAGTA---ALQAAM-------GLVKSGMIKYALAIGADTAQGAPGD-  149 (347)
T ss_pred             cCCCcccccHHHHHHHHcCCCCCceEEEHHHhHHHHHH---HHHHHH-------HHHHcCCCCEEEEEEEeeeccCCCC-
Confidence                             4443  222223 58998874   666565       5566554445687766 76666666 


Q ss_pred             ccccCcccccchhhhH-----hhhcccC-ccccccccccccccccccccccccccch-hchHHhhhhhhHHHhhhhcccc
Q psy11265        608 ISATDRSQYEGAEAFA-----HIKNLED-TYFNRDIEQYFMSHNLYRTRLAYNDFIS-ATDRTEYEGAEAFAHIKNLEDT  680 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l-----~i~~~~~-~~~s~d~~Df~Rp~~~~~~~~~~g~~s~-~~y~~~~~~~~a~~~~~~~~~~  680 (945)
                        ..+.+.|+||+|++     ...++.. .+++.|..|+||+. ....+.....++. ..|.+.+.  .++..+  +...
T Consensus       150 --~~~~~~GDGA~A~ll~~~~~~~~i~~~~~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~~~--L~~~  222 (347)
T PRK04262        150 --ALEYTAAAGGAAFIIGKEEVIAEIEATYSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHII--SAAKGL--MEKL  222 (347)
T ss_pred             --CCCCcCCCCcEEEEEecCcccceeeccccccccchhhcCCC-CCcCCCcCceecchHHHHHHHH--HHHHHH--HHHh
Confidence              45677899999987     1223333 34567889999862 1112222222222 24555443  366555  1122


Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+..++|++|+|..+|.....+.+                 .++.    .|+..+. ..+++||+++||++++|.++
T Consensus       223 gl~~~dId~~v~Hq~n~~~~~~~~~~L-----------------gl~~----ek~~~~~-~~~~~GNt~sAsi~~~L~~~  280 (347)
T PRK04262        223 GLKPSDYDYAVFHQPNGKFPLRVAKML-----------------GFTK----EQVKPGL-LTPYIGNTYSGSALLGLAAV  280 (347)
T ss_pred             CcCHHHhceeecCCCchHHHHHHHHHc-----------------CCCH----HHhhccc-hhhhhCChHHHHHHHHHHHH
Confidence            344456688999999988876655544                 2222    3344344 34899999999999999999


Q ss_pred             hccCCccccCCCcEEEEEecCCCccccccccccc---cccc-ccchhhhhhh-hhhhccccc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKA---HMNV-WNCEEAGADL-KRVAALDST  817 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~---~~~~-~~~~~a~~~l-~r~~idds~  817 (945)
                      ++..    .+| ++|+|++||.|...+++.+++.   |.+. |+. ....+| +|..+++++
T Consensus       281 ~~~~----~~G-d~vll~~~G~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  336 (347)
T PRK04262        281 LDVA----KPG-DRILVVSFGSGAGSDAFSITVTDAIEEKRDLAP-TVEDYLERKKYIDYAV  336 (347)
T ss_pred             HHhC----CCC-CEEEEEecCCCcceeeEEEEechhHHHhhhccc-cHHHHHhCCccCCHHH
Confidence            9742    289 9999999999999999998773   3332 433 234456 777777776

>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative

Probab=99.75  E-value=9.5e-19  Score=197.45  Aligned_cols=279  Identities=18%  Similarity=0.118  Sum_probs=189.9

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      ++||.+++.|+|..+++-+++++..+.+++++..++|.+++++++++|+..+||+.                        
T Consensus         1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~s~   80 (345)
T TIGR00748         1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSE   80 (345)
T ss_pred             CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence            47999999999999999999999999999999889999999999999999999999                        


Q ss_pred             ----------------cCcchh--hHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-cccccccccc
Q psy11265        549 ----------------LSIQCY--LGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFI  608 (945)
Q Consensus       549 ----------------Lsl~~~--~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~  608 (945)
                                      |++.+.  ...+ .+|.++..   ++..|.       .++..+.-.+.||+.+ ......+|  
T Consensus        81 ~~~~~~p~~a~~v~~~LGl~~~~~~~dv~~aC~g~~~---al~~A~-------~~i~sg~~~~vLVv~~d~~~~~~~~--  148 (345)
T TIGR00748        81 SHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTA---GIQACM-------GLVASGMIKYGLAIGADTAQGAPGD--  148 (345)
T ss_pred             CCCccccchHHHHHHHcCCCCCceEEEHHHhHHHHHH---HHHHHH-------HHHHcCCCCEEEEEEEeecccCCCc--
Confidence                            554322  2222 58988774   666665       5666654445687776 65556666  


Q ss_pred             cccCcccccchhhhH-----hhhcccC-ccccccccccccccccccccccccccch-hchHHhhhhhhHHHhhhhccccc
Q psy11265        609 SATDRSQYEGAEAFA-----HIKNLED-TYFNRDIEQYFMSHNLYRTRLAYNDFIS-ATDRTEYEGAEAFAHIKNLEDTY  681 (945)
Q Consensus       609 ~~~E~tqgaGAvA~l-----~i~~~~~-~~~s~d~~Df~Rp~~~~~~~~~~g~~s~-~~y~~~~~~~~a~~~~~~~~~~~  681 (945)
                       ..+.+.|+||+|++     .+..+.. ..+..|..||||+... ..+...+.+.. ..|.+.+.  .+++.+  ++...
T Consensus       149 -~~~~~~GDGAaA~vl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~--L~~~g  222 (345)
T TIGR00748       149 -ALEYTAGAGGAAYIIGEKNTVAYFEGTYSYTTDTPDFWRREGE-PYPRHGGRFTGEPAYFHHVV--TAAKGL--MEKLG  222 (345)
T ss_pred             -cCcccCCCceEEEEEccCCcceEeecccceecccccccccCCC-cCCCcCCeecChHHHHHHHH--HHHHHH--HHHcC
Confidence             56788899999987     2333433 4466778899987211 12222222222 12333222  233333  22223


Q ss_pred             CCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHh
Q psy11265        682 FNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLL  761 (945)
Q Consensus       682 ~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL  761 (945)
                      ...+..|+|++|+|..+|.....+.+                 .++    ..|+..++. .+++||+++||++++|.+++
T Consensus       223 l~~~did~~i~Hq~~~~~~~~~~~~l-----------------gl~----~ek~~~~~~-~~~~GNt~sAsipl~L~~~~  280 (345)
T TIGR00748       223 LTPEDFDYAVFHQPNGKFYLVAARML-----------------GFP----KEQVKPGLL-TPRIGNTYSGATPVGLSAVL  280 (345)
T ss_pred             CCHHHcCEEEeCCCChHHHHHHHHHc-----------------CCC----HHHeecccc-ccccCchhhhHHHHHHHHHH
Confidence            44456688999999988876654443                 122    134444332 37999999999999999999


Q ss_pred             ccCCccccCCCcEEEEEecCCCcccccccccccc---ccc-ccchhhhhhh-hhhhccccc
Q psy11265        762 IQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH---MNV-WNCEEAGADL-KRVAALDST  817 (945)
Q Consensus       762 ~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~---~~~-~~~~~a~~~l-~r~~idds~  817 (945)
                      +...    +| ++|+|++||+|.....+..+..+   ... |+.+ ....| +|..+++++
T Consensus       281 ~~~~----~G-d~vll~~~G~G~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  335 (345)
T TIGR00748       281 DIAE----PG-DRILAVSYGSGAGSDAFSIVVQDAIEEKRDLAPK-VADYIKRKKYIDYAL  335 (345)
T ss_pred             HhcC----CC-CEEEEEEecCCcceeEEEEEEchhHHHHhhhhhh-HHHHHhcCccCCHHH
Confidence            7432    89 99999999999999998887643   222 2222 13344 777777766

Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.73  E-value=2e-17  Score=169.56  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=85.5

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      |.+..|..|+.|++||++++  .||++||||+. ..|++|++|.+++|+||+++|..|++||+++|++||++  |||.. 
T Consensus        81 g~g~~p~~gd~V~v~Y~~~~--~dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~--AYG~~-  154 (177)
T TIGR03516        81 GEGTTPEFGDLVTFEYDIRA--LDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHK--AYGYY-  154 (177)
T ss_pred             CCCCcCCCCCEEEEEEEEEe--CCCCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHH--cCCCC-
Confidence            34568999999999999999  59999999986 46999999999999999999999999999999999999  99983 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                  |..                   ..||||++|+|+|||++|.
T Consensus       155 ------------g~~-------------------~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       155 ------------GDQ-------------------NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             ------------CCC-------------------CCcCcCCcEEEEEEEEEec
Confidence                        211                   2499999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.72  E-value=3.4e-17  Score=171.72  Aligned_cols=107  Identities=22%  Similarity=0.317  Sum_probs=91.0

Q ss_pred             ccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCC
Q psy11265        264 QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI  343 (945)
Q Consensus       264 ~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~  343 (945)
                      .+++|.++..+       ..|.|+.|..++.|+|||+|++  .||++||||+.+++|++|.+|  .+|+||+++|.+|++
T Consensus        99 ~t~sGl~y~vi-------~~G~G~~p~~~d~V~v~Y~g~l--~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~  167 (206)
T PRK11570         99 STESGLQFRVL-------TQGEGAIPARTDRVRVHYTGKL--IDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPV  167 (206)
T ss_pred             ECCCCcEEEEE-------eCCCCCCCCCCCEEEEEEEEEE--CCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCC
Confidence            34566554443       3345678999999999999999  599999999999999999996  699999999999999


Q ss_pred             CcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        344 GEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       344 GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                      |++++|+|||++  |||.             .|.+                   ..||||++|+|+|||++|
T Consensus       168 G~k~~~~IP~~l--AYG~-------------~g~~-------------------~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        168 GSKWELTIPHEL--AYGE-------------RGAG-------------------ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCEEEEEECHHH--cCCC-------------CCCC-------------------CCcCCCCeEEEEEEEEEE
Confidence            999999999999  9997             2221                   249999999999999987

>KOG0552|consensus

Probab=99.72  E-value=1.9e-17  Score=173.19  Aligned_cols=97  Identities=22%  Similarity=0.370  Sum_probs=86.6

Q ss_pred             ccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeE-EEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCC
Q psy11265        282 CSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQ-LVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYP  360 (945)
Q Consensus       282 ~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~-f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG  360 (945)
                      +-|.|+.|..|.+|.|||.|+|. .+|.+||++.. ++|+. |++|.++||+|||.+|.+|++|.+++++|||++  |||
T Consensus       128 ~vG~G~~a~~G~rV~v~Y~Gkl~-~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~l--gYg  203 (226)
T KOG0552|consen  128 RVGSGPSAKKGKRVSVRYIGKLK-GNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPPEL--GYG  203 (226)
T ss_pred             EecCCCCCCCCCEEEEEEEEEec-CCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEEEeCccc--ccc
Confidence            33557899999999999999994 39999999975 78999 999999999999999999999999999999999  999


Q ss_pred             ccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        361 FVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       361 ~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                      .             .|.                    +-||||++|+|+|||+.|
T Consensus       204 ~-------------~g~--------------------~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  204 K-------------KGV--------------------PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             c-------------cCc--------------------CcCCCCCcEEEEEEEEec
Confidence            7             222                    139999999999999986

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.68  E-value=2e-16  Score=145.27  Aligned_cols=91  Identities=30%  Similarity=0.414  Sum_probs=82.2

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      +|+.|++|+|||++++  .+|++|++|+.+++|++|.+|.+++|+||+++|.+|++||+++|.|||++  +||..     
T Consensus         4 ~~~~gd~V~i~y~~~~--~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~--ayg~~-----   74 (94)
T PF00254_consen    4 TPKEGDTVTIHYTGRL--EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPEL--AYGEK-----   74 (94)
T ss_dssp             SBSTTSEEEEEEEEEE--TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGG--TTTTT-----
T ss_pred             cCCCCCEEEEEEEEEE--CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChh--hcCcc-----
Confidence            5899999999999999  59999999988889999999999999999999999999999999999999  99972     


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEE
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELL  413 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl  413 (945)
                              |..                  ...|||+++|+|+||||
T Consensus        75 --------~~~------------------~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   75 --------GLE------------------PPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --------TBC------------------TTTBTTTSEEEEEEEEE
T ss_pred             --------ccC------------------CCCcCCCCeEEEEEEEC
Confidence                    210                  02399999999999997

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.60  E-value=4.7e-15  Score=149.36  Aligned_cols=124  Identities=21%  Similarity=0.269  Sum_probs=91.1

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .++.|++|++||++++  .||++||||+.+++|+.|.+|.|++|+|||++|.+|++||++.|+|||++  |||..++.+.
T Consensus         4 ~i~~~~~V~v~Y~~~~--~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~--ayG~~d~~~v   79 (156)
T PRK15095          4 SVQSNSAVLVHFTLKL--DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEA--AFGVPSPDLI   79 (156)
T ss_pred             ccCCCCEEEEEEEEEe--CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHH--hcCCCChHHE
Confidence            3567899999999999  69999999998889999999999999999999999999999999999999  9999877653


Q ss_pred             hhhcccCCCCcccccccccccc--c--ccc-----------cc--cccccC-CCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQM--H--TGY-----------ED--LNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m--~--~G~-----------~~--~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                      +..+..  -.+.......|+.+  .  .|.           ..  ++.+-| +|.+|.|+|||+++.+
T Consensus        80 ~~vp~~--~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~~  145 (156)
T PRK15095         80 QYFSRR--DFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDP  145 (156)
T ss_pred             EEecHH--HCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEecc
Confidence            222110  00000001122211  1  111           10  122234 8999999999999976

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.60  E-value=6.1e-15  Score=160.26  Aligned_cols=109  Identities=24%  Similarity=0.282  Sum_probs=92.7

Q ss_pred             ccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCC
Q psy11265        264 QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI  343 (945)
Q Consensus       264 ~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~  343 (945)
                      .+++|.++..+.       .|.|+.|..|+.|+|||+|++  .||++||+|+.++.|++|.+|  ++|+||+++|.+|++
T Consensus       143 ~t~sGl~y~Vi~-------~G~G~~p~~gD~V~V~Y~g~l--~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~  211 (269)
T PRK10902        143 TTSTGLLYKVEK-------EGTGEAPKDSDTVVVNYKGTL--IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKK  211 (269)
T ss_pred             ECCCccEEEEEe-------CCCCCCCCCCCEEEEEEEEEe--CCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCC
Confidence            346676665543       344678999999999999999  599999999999999999996  699999999999999


Q ss_pred             CcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCC
Q psy11265        344 GEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESP  418 (945)
Q Consensus       344 GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p  418 (945)
                      |++++|+|||++  +||.             +|.                    ..||||++|+|+|||++|..+
T Consensus       212 Gek~~l~IP~~l--aYG~-------------~g~--------------------~gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        212 GGKIKLVIPPEL--AYGK-------------AGV--------------------PGIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             CcEEEEEECchh--hCCC-------------CCC--------------------CCCCCCCcEEEEEEEEEeccC
Confidence            999999999999  9997             221                    128999999999999999763

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=6e-14  Score=141.63  Aligned_cols=133  Identities=14%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             CCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHhh
Q psy11265        290 SICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDA  369 (945)
Q Consensus       290 ~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~i  369 (945)
                      .+|+.|++||++++  .||++||+|.....|+.|.+|.|++|+|+|++|.+|.+||+..+.|||+.  |||.++++|.+.
T Consensus         4 ~k~~~V~i~Y~~~~--~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~--AfGe~~~~lvq~   79 (174)
T COG1047           4 EKGDVVSLHYTLKV--EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPED--AFGEYDPDLVQR   79 (174)
T ss_pred             cCCCEEEEEEEEEe--cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchH--hcCCCChHHeEE
Confidence            57899999999999  68999999987678999999999999999999999999999999999999  999999988655


Q ss_pred             hccc-CCCCccccccccccccccccc-----c-----------cccccC-CCCcEEEEEEEEeeeCCchhhhhhhccCHH
Q psy11265        370 AKHS-ADGTEQSKRHCCGVQMHTGYE-----D-----------LNELLK-KSQDLTFTIELLQVESPEEYEQESWQLTEA  431 (945)
Q Consensus       370 ~~~g-~~G~~~~~~~~~G~~m~~G~~-----~-----------~~~~ip-p~s~L~FeVELl~v~~p~~y~ke~w~ms~e  431 (945)
                      .+.+ ..+.   .....||.+...-+     .           ++-+-| +|.+|.|+||++++..           ..+
T Consensus        80 vp~~~F~~~---~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~-----------a~~  145 (174)
T COG1047          80 VPRDEFQGV---GELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE-----------ATE  145 (174)
T ss_pred             ecHHHhCcC---CCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec-----------ChH
Confidence            4432 1111   01345665431111     1           111123 9999999999999988           455


Q ss_pred             Hhhhccchh
Q psy11265        432 EKLASIPKL  440 (945)
Q Consensus       432 Ekl~~a~~~  440 (945)
                      |+++..-..
T Consensus       146 eei~~~~~~  154 (174)
T COG1047         146 EEIAHGHVH  154 (174)
T ss_pred             HHHHHHHhh
Confidence            666654444

>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.39  E-value=2.5e-13  Score=151.91  Aligned_cols=250  Identities=14%  Similarity=0.103  Sum_probs=154.5

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      .|+|.+++.|+|..+++.+++++..+.+++++...+|..++.+++.+|++.+||+.                        
T Consensus         3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~   82 (326)
T PRK05963          3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALTLLATS   82 (326)
T ss_pred             ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence            58999999999999999999999999999999999999999999999999999998                        


Q ss_pred             ----------------cCc-chhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-c-ccc-ccccc
Q psy11265        549 ----------------LSI-QCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-L-ARL-AYNDF  607 (945)
Q Consensus       549 ----------------Lsl-~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~-ary-~~~~~  607 (945)
                                      |++ ++..+.+ .+|.+..   .||..|.       +++..+ ..+.||+.+ . .+. ...+ 
T Consensus        83 ~~d~~~p~~a~~v~~~Lg~~~~~~~di~~~C~g~~---~aL~~A~-------~~l~~~-~~~aLVv~~d~~s~~~~~~~-  150 (326)
T PRK05963         83 TPDHLLPPSAPLLAHRLGLQNSGAIDLAGACAGFL---YALVLAD-------GFVRAQ-GKPVLVVAANILSRRINMAE-  150 (326)
T ss_pred             CCCCCCCcHHHHHHHHhCCCCCceeeccchhhHHH---HHHHHHH-------HHHHcC-CCeEEEEEechhhccCCccc-
Confidence                            444 2222223 4899988   4666666       666654 344677665 3 322 2211 


Q ss_pred             ccccCcccccchhhhH-hhhc-----ccCccccc--ccccccc-ccc-----cc-c-------ccccccccchhchHHhh
Q psy11265        608 ISATDRSQYEGAEAFA-HIKN-----LEDTYFNR--DIEQYFM-SHN-----LY-R-------TRLAYNDFISATDRTEY  665 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l-~i~~-----~~~~~~s~--d~~Df~R-p~~-----~~-~-------~~~~~g~~s~~~y~~~~  665 (945)
                       .......|+||.|++ .-..     +....+..  +..|+++ |..     .. .       ....+|..+...+.+.+
T Consensus       151 -~~~~~lfGDgA~A~ll~~~~~~~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (326)
T PRK05963        151 -RASAVLFADAAGAVVLAPSAKANSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMM  229 (326)
T ss_pred             -cCceEEEeecceEEEEEecCCCCCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHH
Confidence             011223478888876 1100     11111111  2334443 210     00 0       11124444443344333


Q ss_pred             hhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhcccc
Q psy11265        666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLI  745 (945)
Q Consensus       666 ~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~v  745 (945)
                      .  .++...  +.......+..|+|++|++..++.....+.+                 .++.    +|+...+   ++.
T Consensus       230 ~--~~~~~~--L~~~gl~~~did~~~~h~~~~~~~~~~~~~l-----------------~l~~----~k~~~~l---~~~  281 (326)
T PRK05963        230 S--GASQNV--LASAAMTPQDIDRFFPHQANARIVDKVCETI-----------------GIPR----AKAASTL---ETY  281 (326)
T ss_pred             H--HHHHHH--HHHcCCCHHHCCEEEeCCCCHHHHHHHHHHc-----------------CCCH----HHhhhhH---Hhh
Confidence            2  133333  2222344455678999999977755443333                 2222    2222222   799


Q ss_pred             CcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        746 GNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       746 GN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      ||++++|++++|..++.+....  +| ++|+++++|.|...
T Consensus       282 Gn~~sas~~~~L~~~~~~~~~~--~G-d~vll~~~G~G~~~  319 (326)
T PRK05963        282 GNSSAATIPLSLSLANLEQPLR--EG-ERLLFAAAGAGMTG  319 (326)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCC--CC-CEEEEEEEehhhhh
Confidence            9999999999998888764322  89 99999999999764

>PRK04262 hypothetical protein; Provisional

Probab=99.37  E-value=2.4e-12  Score=145.56  Aligned_cols=225  Identities=16%  Similarity=0.090  Sum_probs=159.7

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|||.++..|+|...|+.++|++..|.+++++...+|..+..++++.|+...||+.|++++|++.++++++|+.| .++
T Consensus         1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~l-i~~   79 (347)
T PRK04262          1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAV-YVG   79 (347)
T ss_pred             CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            6799999999999999999999999999999998899999999999999999999999999999999999999988 787


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |...    .+.. ..........|+..+++        ..+++.++|.|++.+ |..|..+|+  +  ++.+.+|| ++|
T Consensus        80 s~~~----~~~~-p~~a~~v~~~Lgl~~~~--------~~~dv~~~C~~~~~a-L~~A~~~i~--s--g~~~~aLVv~~e  141 (347)
T PRK04262         80 SESH----PYAV-KPTATIVAEALGATPDL--------TAADLEFACKAGTAA-LQAAMGLVK--S--GMIKYALAIGAD  141 (347)
T ss_pred             ecCC----Cccc-ccHHHHHHHHcCCCCCc--------eEEEHHHhHHHHHHH-HHHHHHHHH--c--CCCCEEEEEEEe
Confidence            7610    1111 11111222445544334        457889999999999 888888886  3  35788998 999


Q ss_pred             cccccccCCCCCCC-----cceeec------cccccccccccCcccCCCCCCcc----ccCc-chhHHHHHHHHHHHHhh
Q psy11265        166 SDVQDRLDARRPVP-----PAEFTR------ILAAKKENLHKYPFRSETPPGEY----LFDG-SYYLESIDDFHRRHYKK  229 (945)
Q Consensus       166 ia~y~~~~~~~~t~-----P~~~~~------~~~~~~~~~~~~Df~rP~~~~~~----~vdG-~~YL~~ld~~~~~y~~r  229 (945)
                      ...+...+..+.+.     -.++..      ......++.+..|+|++.+...+    .+.+ ..|++.+.++++++-++
T Consensus       142 ~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~  221 (347)
T PRK04262        142 TAQGAPGDALEYTAAAGGAAFIIGKEEVIAEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEK  221 (347)
T ss_pred             eeccCCCCCCCCcCCCCcEEEEEecCcccceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHH
Confidence            86443322211111     001111      11111134566789986543221    2333 37888899999998888


Q ss_pred             hccCCCCCCccccceee-eecCCCcccccc
Q psy11265        230 YEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       230 ~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .+-        ..++++ +++|.+..+|.+
T Consensus       222 ~gl--------~~~dId~~v~Hq~n~~~~~  243 (347)
T PRK04262        222 LGL--------KPSDYDYAVFHQPNGKFPL  243 (347)
T ss_pred             hCc--------CHHHhceeecCCCchHHHH
Confidence            643        345677 889988877755

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.36  E-value=3e-12  Score=132.84  Aligned_cols=122  Identities=16%  Similarity=0.241  Sum_probs=90.9

Q ss_pred             CCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHhh
Q psy11265        290 SICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDA  369 (945)
Q Consensus       290 ~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~i  369 (945)
                      ++++.|++||+.++  +||++||+|+. .+|++|.+|.+++|||||++|.+|++|++..|+|+|+.  |||.+++.+.+.
T Consensus         4 ~~~~vV~l~Y~l~~--~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~pee--AyGe~d~~lV~~   78 (196)
T PRK10737          4 AKDLVVSLAYQVRT--EDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND--AYGQYDENLVQR   78 (196)
T ss_pred             CCCCEEEEEEEEEe--CCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHH--hcCCCChHHEEE
Confidence            56899999999999  69999999975 68999999999999999999999999999999999999  999998876443


Q ss_pred             hcccCCCCccccccccccccc----cc----------ccc--cccccC-CCCcEEEEEEEEeeeCC
Q psy11265        370 AKHSADGTEQSKRHCCGVQMH----TG----------YED--LNELLK-KSQDLTFTIELLQVESP  418 (945)
Q Consensus       370 ~~~g~~G~~~~~~~~~G~~m~----~G----------~~~--~~~~ip-p~s~L~FeVELl~v~~p  418 (945)
                      .+..  -.+.......||.+.    .|          ...  ++.+-| ++.+|.|+|+|++++++
T Consensus        79 vpr~--~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~a  142 (196)
T PRK10737         79 VPKD--VFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA  142 (196)
T ss_pred             ecHH--HCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccC
Confidence            3321  000001123444321    11          000  111233 89999999999999773

>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative

Probab=99.35  E-value=4.8e-12  Score=143.21  Aligned_cols=224  Identities=14%  Similarity=0.043  Sum_probs=155.7

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      .|||.++..|+|...|+-++|++..|.+++++..++|..+..++++.|+..+||+.|++++|++.+++|++|+.| .++|
T Consensus         1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~l-i~~s   79 (345)
T TIGR00748         1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAV-YVGS   79 (345)
T ss_pred             CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEe
Confidence            379999999999999999999999999999998899999999999999999999999999999999999999988 7887


Q ss_pred             CcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         88 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      ...    .+. ...........|+...++        ..+++.++|.|++.| |..|..+|+  +  +..+.+|| ++|.
T Consensus        80 ~~~----~~~-~p~~a~~v~~~LGl~~~~--------~~~dv~~aC~g~~~a-l~~A~~~i~--s--g~~~~vLVv~~d~  141 (345)
T TIGR00748        80 ESH----PYA-VKPTATIVAEAIGATPDL--------TAADLEFACKAGTAG-IQACMGLVA--S--GMIKYGLAIGADT  141 (345)
T ss_pred             cCC----Ccc-ccchHHHHHHHcCCCCCc--------eEEEHHHhHHHHHHH-HHHHHHHHH--c--CCCCEEEEEEEee
Confidence            611    011 111112222445543334        467899999999999 999999996  3  34578898 9987


Q ss_pred             ccccccCCCCCCC-----cceee------ccccccccccccCcccCCCCCCccc----cCc-chhHHHHHHHHHHHHhhh
Q psy11265        167 DVQDRLDARRPVP-----PAEFT------RILAAKKENLHKYPFRSETPPGEYL----FDG-SYYLESIDDFHRRHYKKY  230 (945)
Q Consensus       167 a~y~~~~~~~~t~-----P~~~~------~~~~~~~~~~~~~Df~rP~~~~~~~----vdG-~~YL~~ld~~~~~y~~r~  230 (945)
                      ......+....+.     -.+++      ...+...+..+..||||+.....+.    +.+ ..|.+.+-.+.++.-++.
T Consensus       142 ~~~~~~~~~~~~~GDGAaA~vl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  221 (345)
T TIGR00748       142 AQGAPGDALEYTAGAGGAAYIIGEKNTVAYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKL  221 (345)
T ss_pred             cccCCCccCcccCCCceEEEEEccCCcceEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHc
Confidence            6433322222111     00111      1111111334445888875443221    222 357777777787777775


Q ss_pred             ccCCCCCCccccceee-eecCCCcccccc
Q psy11265        231 EAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       231 ~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      +-        ..++++ +++|.+..+|.+
T Consensus       222 gl--------~~~did~~i~Hq~~~~~~~  242 (345)
T TIGR00748       222 GL--------TPEDFDYAVFHQPNGKFYL  242 (345)
T ss_pred             CC--------CHHHcCEEEeCCCChHHHH
Confidence            42        345677 889988887765

Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.

>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III

Probab=99.32  E-value=1.3e-12  Score=145.48  Aligned_cols=251  Identities=16%  Similarity=0.079  Sum_probs=149.0

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |.++|.+++.|+|+.+++++++++..+.+..++....|..++.++...|+...||+.                       
T Consensus         1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~i~~~   80 (318)
T TIGR00747         1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENAGISKDDIDLIIVAT   80 (318)
T ss_pred             CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEC
Confidence            468999999999999999999999887766656566788889999999999999998                       


Q ss_pred             -----------------cCcch-hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-c-ccc-cccc
Q psy11265        549 -----------------LSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-L-ARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~~-~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~-ary-~~~~  606 (945)
                                       |++.. ....+ .+|.++..   +++.|.       +++..+.....||+.+ . ... .+.+
T Consensus        81 ~~~~~~~~~~a~~l~~~lGl~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~~Lvv~~e~~~~~~~~~~  150 (318)
T TIGR00747        81 TTPDHAFPSAACMVQAYLGIKGIPAFDLSAACAGFIY---ALSVAK-------QYIESGKYKTVLVVGAEKLSSTLDWTD  150 (318)
T ss_pred             CCCCCCCChHHHHHHHHhCCCCCcEeehhhhhHHHHH---HHHHHH-------HHHHcCCCCEEEEEEehhhcCcCCcCC
Confidence                             33332 11222 58888774   556555       5565554344577555 3 221 1111


Q ss_pred             cccccCcccccchhhhH--------hhhcccC---cccccc--cccccccccccc-ccccccccchhchHHhhhhhhHHH
Q psy11265        607 FISATDRSQYEGAEAFA--------HIKNLED---TYFNRD--IEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFA  672 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l--------~i~~~~~---~~~s~d--~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~  672 (945)
                        .......|+||+|++        .|.....   +.++..  +++.+++..... ....++......+.+.+.  .+.+
T Consensus       151 --~~~~~~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  226 (318)
T TIGR00747       151 --RGTCVLFGDGAGAVVLGESEDPGGIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMG--DVVE  226 (318)
T ss_pred             --CCeEEEEecceeEEEEeecCCCCcEEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHH--HHHH
Confidence              011234688888877        1222221   111111  112122200011 112233333334444433  2344


Q ss_pred             hhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchh
Q psy11265        673 HIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPS  752 (945)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaS  752 (945)
                      ++  ++......+..+||++|++..++.....+.+                 .++.    .|+...  + +++||++++|
T Consensus       227 ~~--l~~~g~~~~di~~~~~h~~~~~~~~~~~~~l-----------------gi~~----~k~~~~--~-~~~Gn~~sas  280 (318)
T TIGR00747       227 ET--LEANGLDPEDIDWFVPHQANLRIIEALAKRL-----------------ELDM----SQVVKT--V-HKYGNTSAAS  280 (318)
T ss_pred             HH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHc-----------------CCCH----HHeeeh--H-hhhCCHHHHH
Confidence            33  1222334455578999988866554433332                 2222    222222  3 5699999999


Q ss_pred             HHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        753 LYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       753 lyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      ++++|.+++++....  +| ++|+++++|+|..
T Consensus       281 ~~~~L~~~~~~~~~~--~G-d~vll~~~G~G~t  310 (318)
T TIGR00747       281 IPLALDELLRTGRIK--PG-DLLLLVAFGGGLT  310 (318)
T ss_pred             HHHHHHHHHHcCCCC--CC-CEEEEEEEehhhe
Confidence            999999999875322  89 9999999999965

Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.

>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.31  E-value=1.9e-12  Score=145.42  Aligned_cols=256  Identities=14%  Similarity=0.114  Sum_probs=158.6

Q ss_pred             cccccccceeeccccccchhHhhhh-------cCcCcccccccccccccccCCCcchhhhhhhc----------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKH-------DQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~-------~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------  548 (945)
                      .+|+|.+++.|+|..+++++++++.       .+.++.++....|.+++.+.+..|+..+||+.                
T Consensus         4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~~I   83 (338)
T PRK09258          4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAGRKALAEAGIDPSDI   83 (338)
T ss_pred             cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEecCCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence            4689999999999999999999875       24566678778899999999999999999998                


Q ss_pred             ------------------------cCcc--hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-cc
Q psy11265        549 ------------------------LSIQ--CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LA  600 (945)
Q Consensus       549 ------------------------Lsl~--~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~a  600 (945)
                                              |++.  +....+ .+|.++..   |+..|.       +++..+.....||+.+ ..
T Consensus        84 d~li~~s~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~~~~~---al~~A~-------~~i~~g~~~~~Lvv~~e~~  153 (338)
T PRK09258         84 GLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNACLGFLN---GMLDAA-------NMIELGQIDYALVVSGESA  153 (338)
T ss_pred             CEEEEEcCCCCCCCChHHHHHHHHcCCCCCCceeehhhhhHHHHH---HHHHHH-------HHHHcCCCCEEEEEEeccc
Confidence                                    5553  333334 58999884   666665       6666554445677665 33


Q ss_pred             cccc----ccccccc-----------CcccccchhhhH--hhh------cccCcccccccccccccccccc-cccccccc
Q psy11265        601 RLAY----NDFISAT-----------DRSQYEGAEAFA--HIK------NLEDTYFNRDIEQYFMSHNLYR-TRLAYNDF  656 (945)
Q Consensus       601 ry~~----~~~~~~~-----------E~tqgaGAvA~l--~i~------~~~~~~~s~d~~Df~Rp~~~~~-~~~~~g~~  656 (945)
                      ...+    ..+....           ..+.|+||+|++  .-.      .+. +..+....|++......+ ....++..
T Consensus       154 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (338)
T PRK09258        154 REIVEATIDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLL-GGVTRAATEHHELCQGGRDGMRTDAVG  232 (338)
T ss_pred             chhccchhhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceee-eeeeecCCCcccccccCccceEEcHHH
Confidence            2211    1111011           235799999987  110      111 112222233433211111 22245555


Q ss_pred             chhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhc
Q psy11265        657 ISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTK  736 (945)
Q Consensus       657 s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~  736 (945)
                      ....+.+.+.  .+++++  ++......+..|||++|++..++.....+.+                 .++.    .|+-
T Consensus       233 ~~~~~~~~~~--~~~~~~--L~~~g~~~~did~~i~H~~~~~~~~~~~~~l-----------------gl~~----~k~~  287 (338)
T PRK09258        233 LLKEGVELAV--DTWEAF--LAQLGWAVEQVDRVICHQVGAAHTRAILKAL-----------------GIDP----EKVF  287 (338)
T ss_pred             HHHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEecCCCCHHHHHHHHHHh-----------------CCCH----HHce
Confidence            5555655443  255554  1222344455688999987755543222222                 2221    2232


Q ss_pred             hhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccc
Q psy11265        737 PGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       737 psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~  789 (945)
                      .++   .++||++++|+++.|..+++.....  +| ++|+++++|+|......
T Consensus       288 ~~~---~~~GN~~sas~~~~L~~~~~~g~~~--~G-d~vll~~~G~G~s~~~~  334 (338)
T PRK09258        288 TTF---PTLGNMGPASLPITLAMAAEEGFLK--PG-DRVALLGIGSGLNCSML  334 (338)
T ss_pred             ehH---hhhCCcHHhHHHHHHHHHHHhCCCC--CC-CEEEEEEechhHhhHhH
Confidence            222   5899999999999999999764322  89 99999999999876554

>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.28  E-value=2.2e-12  Score=143.93  Aligned_cols=252  Identities=15%  Similarity=0.064  Sum_probs=147.8

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      +++++|.+++.|+|..+++++|+++..+.+.+++...+|.+++.++.+.|+..+||+.                      
T Consensus         2 ~~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~   81 (325)
T PRK12879          2 MSYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARAGLDAEDIDLIIVA   81 (325)
T ss_pred             CCCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            3579999999999999999999999887766777677899999999999999999998                      


Q ss_pred             ------------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-cc
Q psy11265        549 ------------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YN  605 (945)
Q Consensus       549 ------------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~  605 (945)
                                        |++. +....+ .+|.++..   |+..|.       +++..+.....||+.+  ..++- ..
T Consensus        82 ~~~~~~~~~~~a~~l~~~lg~~~~~~~~v~~~C~~~~~---al~~A~-------~~l~~g~~~~~Lvv~~e~~s~~~~~~  151 (325)
T PRK12879         82 TTTPDYLFPSTASQVQARLGIPNAAAFDINAACAGFLY---GLETAN-------GLITSGLYKKVLVIGAERLSKVTDYT  151 (325)
T ss_pred             cCCCCCCCChHHHHHHHHhCCCCCcEEEECccchHHHH---HHHHHH-------HHHHcCCCCEEEEEEehhhcCcCCcc
Confidence                              4433 122222 58888774   666565       5666554444677665  44331 12


Q ss_pred             ccccccCcccccchhhhH--h------hhcccCcccc---c--ccccccccccccc-----ccccccccchhchHHhhhh
Q psy11265        606 DFISATDRSQYEGAEAFA--H------IKNLEDTYFN---R--DIEQYFMSHNLYR-----TRLAYNDFISATDRTEYEG  667 (945)
Q Consensus       606 ~~~~~~E~tqgaGAvA~l--~------i~~~~~~~~s---~--d~~Df~Rp~~~~~-----~~~~~g~~s~~~y~~~~~~  667 (945)
                      +  +..-...|+||+|+|  +      +.....++.+   .  .+.+++++.+...     ....+|.   .++..+.+.
T Consensus       152 ~--~~~~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  226 (325)
T PRK12879        152 D--RTTCILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGR---EVFKWAVRT  226 (325)
T ss_pred             c--cCceEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCH---HHHHHHHHH
Confidence            1  111234688998877  1      1110000100   0  1223333210000     0011121   111111110


Q ss_pred             -hhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccC
Q psy11265        668 -AEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIG  746 (945)
Q Consensus       668 -~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vG  746 (945)
                       +.+++.+  +.......+..|+|++|++..++.. ++...+                .++.    .|+...  + +++|
T Consensus       227 ~~~~i~~~--L~~~g~~~~did~~~~h~~~~~~~~-~~~~~l----------------g~~~----~~~~~~--~-~~~G  280 (325)
T PRK12879        227 MPKGARQV--LEKAGLTKDDIDWVIPHQANLRIIE-SLCEKL----------------GIPM----EKTLVS--V-EYYG  280 (325)
T ss_pred             HHHHHHHH--HHHcCCCHHHCCEEEECCCCHHHHH-HHHHHc----------------CCCH----HHhhhh--H-hhhC
Confidence             1133333  1222333345578999988866643 222221                1222    122221  2 7999


Q ss_pred             cccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        747 NMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       747 N~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      |++++|+++.|..++++...  .+| ++|+++++|+|...
T Consensus       281 n~~sas~~~~L~~~~~~g~~--~~G-d~vll~~~G~G~~~  317 (325)
T PRK12879        281 NTSAATIPLALDLALEQGKI--KPG-DTLLLYGFGAGLTW  317 (325)
T ss_pred             chHHHHHHHHHHHHHHcCCC--CCC-CEEEEEEEchhhhh
Confidence            99999999999999986432  289 99999999999764

>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems

Probab=99.28  E-value=2.3e-12  Score=143.07  Aligned_cols=251  Identities=17%  Similarity=0.101  Sum_probs=154.4

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      +++|.+++.|+|..+++++++.+..+.+.+++....|.+++.++.+.|+...||+.                        
T Consensus         1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~   80 (320)
T cd00830           1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS   80 (320)
T ss_pred             CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence            57999999999999999999999888887888888999999999999999999998                        


Q ss_pred             ----------------cCc-chhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-cccc
Q psy11265        549 ----------------LSI-QCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YNDF  607 (945)
Q Consensus       549 ----------------Lsl-~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~~  607 (945)
                                      |++ .+....+ .+|.++..   ++..|.       +++..+.....||+.+  +.+.- +.+ 
T Consensus        81 ~~~~~~~~~~~~l~~~lg~~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~vLvv~~e~~s~~~~~~~-  149 (320)
T cd00830          81 TPDYLFPATACLVQARLGAKNAAAFDINAACSGFLY---GLSTAA-------GLIRSGGAKNVLVVGAETLSRILDWTD-  149 (320)
T ss_pred             CCCCCCCcHHHHHHHHhCCCCCcEeeccccchHHHH---HHHHHH-------HHHHcCCCCEEEEEEehhhccccCccc-
Confidence                            333 2222222 47888774   566565       5566665455677654  43321 121 


Q ss_pred             ccccCcccccchhhhH--h------hhcccCccc--ccccccccc-----cc---ccc-cccccccccchhchHHhhhhh
Q psy11265        608 ISATDRSQYEGAEAFA--H------IKNLEDTYF--NRDIEQYFM-----SH---NLY-RTRLAYNDFISATDRTEYEGA  668 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l--~------i~~~~~~~~--s~d~~Df~R-----p~---~~~-~~~~~~g~~s~~~y~~~~~~~  668 (945)
                       .......|+||+|++  .      |......+.  +.|...+..     |.   ... .....++......+.+.+.  
T Consensus       150 -~~~~~~~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  226 (320)
T cd00830         150 -RSTAVLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMP--  226 (320)
T ss_pred             -CCceEEEeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhH--
Confidence             122356799999987  1      222111111  122222221     10   000 0112344444444444433  


Q ss_pred             hHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcc
Q psy11265        669 EAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNM  748 (945)
Q Consensus       669 ~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~  748 (945)
                      .++..+  +.......+..++|++|++..++-....+.+                 .++.+    |+..   .-+++||+
T Consensus       227 ~~i~~~--l~~~g~~~~di~~~~~h~~~~~~~~~~~~~l-----------------gl~~~----~~~~---~~~~~Gn~  280 (320)
T cd00830         227 ESIEEA--LEKAGLTPDDIDWFVPHQANLRIIEAVAKRL-----------------GLPEE----KVVV---NLDRYGNT  280 (320)
T ss_pred             HHHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHh-----------------CCCHH----Hhhh---hHHhhCcH
Confidence            244444  1122333345578999988866644332322                 22222    2211   22689999


Q ss_pred             cchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        749 YTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       749 YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +++|+++.|..++++....  +| ++|+|+++|+|...
T Consensus       281 ~sas~~~~L~~~~~~~~~~--~G-~~vll~~~G~G~~~  315 (320)
T cd00830         281 SAASIPLALDEAIEEGKLK--KG-DLVLLLGFGAGLTW  315 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEchHHhh
Confidence            9999999999999875422  89 99999999999653

It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.

>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.20  E-value=1.4e-11  Score=138.10  Aligned_cols=254  Identities=15%  Similarity=0.035  Sum_probs=144.7

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      +.+++|.+++.|+|..+++.+++++..+...+++....|.+++.++. .|+..+||+.                      
T Consensus         2 ~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~-~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~   80 (329)
T PRK07204          2 KRYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDAKLTLDDIDCIICA   80 (329)
T ss_pred             CCCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeecC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            45789999999999999999999998888777788889999999999 8999999988                      


Q ss_pred             ------------------cCcc---hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccc
Q psy11265        549 ------------------LSIQ---CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYN  605 (945)
Q Consensus       549 ------------------Lsl~---~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~  605 (945)
                                        |++.   |....+ .+|.++..   |+..|.       .++..+.....||+.+ .....++
T Consensus        81 ~~~~~~~~p~~a~~v~~~lgl~~~~~~~~~v~~~C~~~~~---al~~a~-------~~l~~g~~~~~Lvv~~e~~s~~~~  150 (329)
T PRK07204         81 SGTIQQAIPCTASLIQEQLGLQHSGIPCFDINSTCLSFIT---ALDTIS-------YAIECGRYKRVLIISSEISSVGLN  150 (329)
T ss_pred             CCCCCCCCccHHHHHHHHhCCCCCCceEEEccchhHHHHH---HHHHHH-------HHHHCCCCCEEEEEEeccccCCCC
Confidence                              4443   223333 38988884   555554       5555444445687665 4322221


Q ss_pred             ccccccCcccccchhhhH--hh---hcccC-ccccc-ccccc---------------ccccccccccccccccchhchHH
Q psy11265        606 DFISATDRSQYEGAEAFA--HI---KNLED-TYFNR-DIEQY---------------FMSHNLYRTRLAYNDFISATDRT  663 (945)
Q Consensus       606 ~~~~~~E~tqgaGAvA~l--~i---~~~~~-~~~s~-d~~Df---------------~Rp~~~~~~~~~~g~~s~~~y~~  663 (945)
                      --....-...|+||+|++  .-   ..+.. ...|. +..|+               |.+......-..+|........+
T Consensus       151 ~~~~~~~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (329)
T PRK07204        151 WGQNESCILFGDGAAAVVITKGDHSSRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSK  230 (329)
T ss_pred             cccCcceEEEecccEEEEEEEcCCCCcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHH
Confidence            100011133689999977  10   01110 00000 00111               11100000001112111111111


Q ss_pred             hhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhcc
Q psy11265        664 EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLAN  743 (945)
Q Consensus       664 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~  743 (945)
                      .+.  .+++..  +.......+..|+|++|++..++.. ++...+                .++.    .++.   ..-+
T Consensus       231 ~~~--~~i~~~--L~~~gl~~~did~~~~H~~~~~~~~-~i~~~l----------------~l~~----e~~~---~~~~  282 (329)
T PRK07204        231 YLM--KFIDKL--LMDAGYTLADIDLIVPHQASGPAMR-LIRKKL----------------GVDE----ERFV---TIFE  282 (329)
T ss_pred             HHH--HHHHHH--HHHcCCCHHHCCEEEeCCCCHHHHH-HHHHHc----------------CCCH----HHhh---hhHh
Confidence            111  122222  1222333344567999988755532 332221                1222    1221   1227


Q ss_pred             ccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        744 LIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       744 ~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +.||++++|+++.|..++++...+  +| ++|+|+++|.|..-
T Consensus       283 ~~Gn~~sas~~~~L~~~~~~g~~~--~G-d~vll~~~G~G~s~  322 (329)
T PRK07204        283 DHGNMIAASIPVALFEAIKQKKVQ--RG-NKILLLGTSAGLSI  322 (329)
T ss_pred             hhCcHHHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEchhhhh
Confidence            999999999999999999875422  89 99999999999653

>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.17  E-value=2.2e-11  Score=135.60  Aligned_cols=251  Identities=16%  Similarity=0.055  Sum_probs=145.4

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      +.|+|.+++.|+|..+++++++.+..+.+..+.....|..++.++.++++...||+.                       
T Consensus         2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~id~vi~~~   81 (319)
T PRK09352          2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVAT   81 (319)
T ss_pred             CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            579999999999999999999999887655555455677778888899999999998                       


Q ss_pred             -----------------cCcch-hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cccc
Q psy11265        549 -----------------LSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~~-~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~  606 (945)
                                       +++.. ....+ .+|.++..   |+..|.       +++..+.....||..+  +.+. .+.+
T Consensus        82 ~~~~~~~~~~~~~i~~~lG~~~~~~~~v~~~Casg~~---al~~A~-------~~i~~g~~~~vLvv~~e~~s~~~~~~~  151 (319)
T PRK09352         82 TTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVY---ALSTAD-------QFIRSGAYKNVLVIGAEKLSRIVDWTD  151 (319)
T ss_pred             CCCCCCCchHHHHHHHHhCCCCCcEeeccccchhHHH---HHHHHH-------HHHHcCCCCEEEEEEehhhccccCccc
Confidence                             22211 11111 47887774   555555       5555543344577554  4433 1222


Q ss_pred             cccccCcccccchhhhH-------hhhcccCcccccccccccc-cccccccc------ccccccchhchHHhhhhhhHHH
Q psy11265        607 FISATDRSQYEGAEAFA-------HIKNLEDTYFNRDIEQYFM-SHNLYRTR------LAYNDFISATDRTEYEGAEAFA  672 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l-------~i~~~~~~~~s~d~~Df~R-p~~~~~~~------~~~g~~s~~~y~~~~~~~~a~~  672 (945)
                        ...-...|+||+|+|       .+...+..+.+. ..|+++ |......+      ..+++.+...+.+.+.  .+++
T Consensus       152 --~~~~~~~gDGaaA~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~  226 (319)
T PRK09352        152 --RSTCVLFGDGAGAVVLGASEEPGILSTHLGSDGS-YGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELA--KVAR  226 (319)
T ss_pred             --CCceEEEeccceEEEEEEcCCCCeEEEEEEEcCC-CCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHH--HHHH
Confidence              011124588888877       122222111111 112222 31110111      1234434444444433  2444


Q ss_pred             hhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchh
Q psy11265        673 HIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPS  752 (945)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaS  752 (945)
                      +.-  .......+..+|++.|++..++-.. +...+                .++.+.+    ...  + .++||+++++
T Consensus       227 ~~l--~~~g~~~~di~~~~~h~~~~~~~~~-~~~~l----------------g~~~~~~----~~~--~-~~~Gn~~~a~  280 (319)
T PRK09352        227 EAL--EAAGLTPEDIDWLVPHQANLRIIDA-TAKKL----------------GLPMEKV----VVT--V-DKYGNTSAAS  280 (319)
T ss_pred             HHH--HHcCCCHHHCCEEEECCCCHHHHHH-HHHHh----------------CCCHHHh----hhh--H-HhhCCHHHHH
Confidence            441  1223444455778899776443322 22111                2233222    111  2 5899999999


Q ss_pred             HHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        753 LYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       753 lyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +++.|.++|++....  +| ++|+++++|.|...
T Consensus       281 ~~~~L~~~~~~g~~~--~G-d~vll~s~G~G~~~  311 (319)
T PRK09352        281 IPLALDEAVRDGRIK--RG-DLVLLEGFGGGLTW  311 (319)
T ss_pred             HHHHHHHHHHcCCCC--CC-CEEEEEEEchhhee
Confidence            999999999864322  89 99999999998764

>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

Probab=99.12  E-value=9.4e-11  Score=130.47  Aligned_cols=254  Identities=24%  Similarity=0.247  Sum_probs=144.1

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      .|+|.+++.|+|..+++.+++++..+.+  .+....|..++.+..++++..+|++.                        
T Consensus         1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~--~~~~~~gi~~r~~~~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~~~   78 (324)
T cd00827           1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE   78 (324)
T ss_pred             CccEEEEEecCCceeecHHHHHHHhCCC--cceeeeecceeEecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence            4899999999999999999999988765  34455677777777778999999888                        


Q ss_pred             ----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccccccc
Q psy11265        549 ----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFIS  609 (945)
Q Consensus       549 ----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~~  609 (945)
                                      |++. +....+ .+|.++..   |+..|.       .++..+.....||+.+ ........ ..
T Consensus        79 ~~~~~~~~~~~~i~~~lg~~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~vlvv~~e~~~~~~~~-~~  147 (324)
T cd00827          79 SPIDKGKSAATYLAELLGLTNAEAFDLKQACYGGTA---ALQLAA-------NLVESGPWRYALVVASDIASYLLDE-GS  147 (324)
T ss_pred             CCCCCCccHHHHHHHHcCCCCCceeehhhhhHHHHH---HHHHHH-------HHHHcCCCCEEEEEEEHHhhhcccC-CC
Confidence                            3331 111222 58888774   556565       5566665555677665 33222210 11


Q ss_pred             ccCcccccchhhhH-----h--hhcccCcccccc---------cccccccccc---ccccc-ccc--ccchhchHHhhhh
Q psy11265        610 ATDRSQYEGAEAFA-----H--IKNLEDTYFNRD---------IEQYFMSHNL---YRTRL-AYN--DFISATDRTEYEG  667 (945)
Q Consensus       610 ~~E~tqgaGAvA~l-----~--i~~~~~~~~s~d---------~~Df~Rp~~~---~~~~~-~~g--~~s~~~y~~~~~~  667 (945)
                      ..+...|+||+|+|     .  ...+.......+         .+++..|...   ..... .++  ......+.+.+. 
T Consensus       148 ~~~~~~gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  226 (324)
T cd00827         148 ALEPTLGDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIA-  226 (324)
T ss_pred             CccccccCceEEEEEecCcccccCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHH-
Confidence            45667899999988     1  123332222222         2333222100   00000 000  000111111111 


Q ss_pred             hhHHHhhhhcccccCCcchHHHHHHhCCCc-cchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhh-hhcccc
Q psy11265        668 AEAFAHIKNLEDTYFNRDIEQYFMSHNRTE-YEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGL-YLANLI  745 (945)
Q Consensus       668 ~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~-~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl-~~~~~v  745 (945)
                       .+.+..  +...... +..++|+.|++.. .+.....+.+                 .+.    ..++.++. ..-+++
T Consensus       227 -~~~~~~--l~~~~~~-~~i~~~~~h~~~~~~~~~~~~~~l-----------------~~~----~~~~~~~~~~~~~~~  281 (324)
T cd00827         227 -KVVRKA--LDRAGLS-EDIDYFVPHQPNGKKILEAVAKKL-----------------GGP----PEKASQTRWILLRRV  281 (324)
T ss_pred             -HHHHHH--HHHcccc-cccceeeccCchHHHHHHHHHHHc-----------------cch----HhhhccchhhHHHHh
Confidence             111111  1222222 3457899998775 3322222221                 111    12333333 255999


Q ss_pred             CcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccc
Q psy11265        746 GNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKAL  788 (945)
Q Consensus       746 GN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~  788 (945)
                      ||+++||++++|..+|++....  +| ++|+++++|.|.....
T Consensus       282 Gn~~sa~~~~~L~~~~~~~~~~--~G-d~vl~~~~G~G~~~~~  321 (324)
T cd00827         282 GNMYAASILLGLASLLESGKLK--AG-DRVLLFSYGSGFTAEA  321 (324)
T ss_pred             CchHHHHHHHHHHHHHhcCCCC--CC-CEEEEEEeccchhhee
Confidence            9999999999999999876433  89 9999999999976543

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.

>PRK06840 hypothetical protein; Validated

Probab=99.06  E-value=1.7e-10  Score=130.00  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~  548 (945)
                      |++|+|.+++.|+|...++.++|++..|.+.+++...+|..++++++..|+..+||+.
T Consensus         2 ~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~   59 (339)
T PRK06840          2 EMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIA   59 (339)
T ss_pred             CCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHH
Confidence            5789999999999999999999999988888888788999999999999999999998

>KOG0543|consensus

Probab=99.04  E-value=1.7e-10  Score=129.16  Aligned_cols=58  Identities=31%  Similarity=0.464  Sum_probs=54.3

Q ss_pred             ccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcE
Q psy11265        286 EDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEI  346 (945)
Q Consensus       286 ~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~  346 (945)
                      .++|..|++|.|||+|+|  .||+.||||++ ++||.|.+|+|.+|.||+.++.+|+.|+.
T Consensus         6 ~~~p~~g~~v~~hytg~l--~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~~   63 (397)
T KOG0543|consen    6 TETPMTGDKVEVHYTGTL--LDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGEA   63 (397)
T ss_pred             ccCCCCCceeEEEEeEEe--cCCeecccccC-CCceeeecCCCcccccccccccccccccc
Confidence            468999999999999999  59999999999 99999999999999999999999999554

>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional

Probab=99.04  E-value=1.7e-10  Score=129.39  Aligned_cols=251  Identities=16%  Similarity=0.084  Sum_probs=145.2

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |.|+|.+++.|+|..+++.+|+++..+.+.+++....|.+++.++.+.|+...||+.                       
T Consensus         1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~~s   80 (326)
T CHL00203          1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAHMDPLEIDLIILAT   80 (326)
T ss_pred             CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence            468999999999999999999999988766777788999999999999999999988                       


Q ss_pred             ----------------cCcch-hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-cccc
Q psy11265        549 ----------------LSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YNDF  607 (945)
Q Consensus       549 ----------------Lsl~~-~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~~  607 (945)
                                      |++.. ....+ .+|.++..   ++..|.       +++..+.-.+.||+.+  ..++- ..+ 
T Consensus        81 ~~~~~~~~~~~~v~~~Lg~~~~~~~~v~~~Casg~~---al~~A~-------~~i~sg~~~~~Lvv~~e~~s~~~~~~~-  149 (326)
T CHL00203         81 STPDDLFGSASQLQAEIGATRAVAFDITAACSGFIL---ALVTAT-------QFIQNGSYKNILVVGADTLSKWIDWSD-  149 (326)
T ss_pred             CCCCCCCchHHHHHHHhCCCCCceeeecccchhHHH---HHHHHH-------HHHHcCCCCEEEEEEehhhhCcCCccc-
Confidence                            22211 11111 38888774   555555       5565554445687665  44432 222 


Q ss_pred             ccccCcccccchhhhH--hhh--cccCcccccc--ccccc----ccccccc---ccc---------cccccchhchHHhh
Q psy11265        608 ISATDRSQYEGAEAFA--HIK--NLEDTYFNRD--IEQYF----MSHNLYR---TRL---------AYNDFISATDRTEY  665 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l--~i~--~~~~~~~s~d--~~Df~----Rp~~~~~---~~~---------~~g~~s~~~y~~~~  665 (945)
                       .......|+||.|++  .-.  .+....+..|  ..+++    .|....+   +..         .+|.......+.. 
T Consensus       150 -~~~~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  227 (326)
T CHL00203        150 -RKTCILFGDGAGAAIIGASYENSILGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQ-  227 (326)
T ss_pred             -CCceEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHH-
Confidence             012234588888877  100  0001011111  11111    1100000   000         1111111111111 


Q ss_pred             hhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhcccc
Q psy11265        666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLI  745 (945)
Q Consensus       666 ~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~v  745 (945)
                       .|.+++..  +.......+.-|+|++|++..++... +...|                .++.+    |+-.  .+ ++.
T Consensus       228 -~~~~i~~~--L~~~g~~~~did~~~~hq~~~~~~~~-~~~~l----------------gl~~~----k~~~--~l-~~~  280 (326)
T CHL00203        228 -VPAVIIKC--LNALNISIDEVDWFILHQANKRILEA-IANRL----------------SVPNS----KMIT--NL-EKY  280 (326)
T ss_pred             -HHHHHHHH--HHHcCCCHHHCCEEEECCCCHHHHHH-HHHHh----------------CCCHH----Hhhh--HH-Hhh
Confidence             12233333  22223444555779999888665333 33322                22322    2211  22 799


Q ss_pred             CcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        746 GNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       746 GN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      ||++++|++++|..++++...+  +| ++|+|+++|.|..
T Consensus       281 Gn~~sasi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~s  317 (326)
T CHL00203        281 GNTSAASIPLALDEAIQNNKIQ--PG-QIIVLSGFGAGLT  317 (326)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCC--CC-CEEEEEEEchhhh
Confidence            9999999999999999864323  89 9999999999974

>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.02  E-value=3.8e-10  Score=128.21  Aligned_cols=142  Identities=14%  Similarity=0.076  Sum_probs=110.6

Q ss_pred             CcccceeeeeeecCCccccHHHH-HhhcCCC---cccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTEL-EKHDQVS---AGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQ   81 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L-~~~~gv~---~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~   81 (945)
                      -++|+|.++..|+|+.+|+++++ ++..+-+   ..|.....|.+++.++.+.|+..+||+.|++++|++.++++++|+.
T Consensus         5 ~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~   84 (353)
T PRK12880          5 FDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDA   84 (353)
T ss_pred             ccccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence            35799999999999999999874 4443322   2356667899999999999999999999999999999999999999


Q ss_pred             cccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCccee
Q psy11265         82 LLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTL  161 (945)
Q Consensus        82 l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~L  161 (945)
                      | +++|.     +.=.......+.....|+.+.++        .++++..+|.|++.+ |..|..+++  +  ++.+ +|
T Consensus        85 l-I~~t~-----t~d~~~P~~a~~v~~~Lg~~~~~--------~~~di~~~C~g~~~a-L~~A~~~i~--~--~~~~-~L  144 (353)
T PRK12880         85 L-IVVTQ-----SPDFFMPSTACYLHQLLNLSSKT--------IAFDLGQACAGYLYG-LFVAHSLIQ--S--GLGK-IL  144 (353)
T ss_pred             E-EEEcC-----CCCCCCCcHHHHHHHHhCCCCCc--------eEEehhhhhHHHHHH-HHHHHHHHH--c--CCCC-EE
Confidence            9 89998     11111222333333556665555        678999999999999 999999996  3  3556 88


Q ss_pred             e-ecccc
Q psy11265        162 V-TKLSD  167 (945)
Q Consensus       162 V-asdia  167 (945)
                      | ++|..
T Consensus       145 Vv~~e~~  151 (353)
T PRK12880        145 LICGDTL  151 (353)
T ss_pred             EEEehhh
Confidence            8 88864

>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.00  E-value=4.3e-10  Score=125.89  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=112.4

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      .|+|.++..|+|...|+.+++++..|.+++++...+|..++.++.+.|++.+||+.||+++|++.++++++|+.| +++|
T Consensus         3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~l-i~~t   81 (326)
T PRK05963          3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALT-LLAT   81 (326)
T ss_pred             ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999988 7888


Q ss_pred             CcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         88 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      . +-+ ..|-.   ........|+.+ ++        ..+++.++|.|++.| |..|..+++  +  + .+++|| ++|.
T Consensus        82 ~-~~d-~~~p~---~a~~v~~~Lg~~-~~--------~~~di~~~C~g~~~a-L~~A~~~l~--~--~-~~~aLVv~~d~  141 (326)
T PRK05963         82 S-TPD-HLLPP---SAPLLAHRLGLQ-NS--------GAIDLAGACAGFLYA-LVLADGFVR--A--Q-GKPVLVVAANI  141 (326)
T ss_pred             C-CCC-CCCCc---HHHHHHHHhCCC-CC--------ceeeccchhhHHHHH-HHHHHHHHH--c--C-CCeEEEEEech
Confidence            6 111 01111   111222344432 33        568999999999999 888888886  3  2 378998 9887


Q ss_pred             c
Q psy11265        167 D  167 (945)
Q Consensus       167 a  167 (945)
                      .
T Consensus       142 ~  142 (326)
T PRK05963        142 L  142 (326)
T ss_pred             h
Confidence            4

>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III

Probab=98.99  E-value=4.1e-10  Score=129.12  Aligned_cols=254  Identities=13%  Similarity=0.063  Sum_probs=145.1

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      ++.++|.+++.|+|...++.+++.+..+.++++.....|..++.++..+|+..+||+.                      
T Consensus        45 ~~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~aL~~agi~~~dId~li~~  124 (379)
T PLN02326         45 GSGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMAGVDPEDVDLVLLC  124 (379)
T ss_pred             cCCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            4689999999999999999999999888777777778899999999999999999998                      


Q ss_pred             -----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccccc-cc
Q psy11265        549 -----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLAY-ND  606 (945)
Q Consensus       549 -----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~~-~~  606 (945)
                                       |++. +....+ .+|.++..   |+..|.       .++..+.....||+.+  ..++.. ++
T Consensus       125 s~~~~~~~~~a~~v~~~LG~~~~~~~dv~~~Ca~~~~---aL~~A~-------~~l~~g~~~~vLVv~~e~~s~~~~~~d  194 (379)
T PLN02326        125 TSSPDDLFGSAPQVQAALGCTNALAFDLTAACSGFVL---GLVTAA-------RFIRGGGYKNVLVIGADALSRYVDWTD  194 (379)
T ss_pred             eCCCCccCcHHHHHHHHhCCCCCceeeccccchHHHH---HHHHHH-------HHHHcCCCCEEEEEEechhcCCCCccc
Confidence                             3321 111222 48888874   566555       5566554445687665  555432 22


Q ss_pred             cccccCcccccchhhhH--h-------hhccc---Cccccccc----cccc-----ccc-ccccccccccccc------h
Q psy11265        607 FISATDRSQYEGAEAFA--H-------IKNLE---DTYFNRDI----EQYF-----MSH-NLYRTRLAYNDFI------S  658 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l--~-------i~~~~---~~~~s~d~----~Df~-----Rp~-~~~~~~~~~g~~s------~  658 (945)
                        ...-...|+||+|++  .       +..+.   .+.+...+    .+..     .|. ...+.+.....+.      .
T Consensus       195 --~~~~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (379)
T PLN02326        195 --RGTCILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGK  272 (379)
T ss_pred             --cCceEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCH
Confidence              011124688888877  1       11000   01010000    1110     000 0000000000110      0


Q ss_pred             hchHHhhh-hhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhch
Q psy11265        659 ATDRTEYE-GAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKP  737 (945)
Q Consensus       659 ~~y~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~p  737 (945)
                      ..+..+.. .+.+++.+  +.......+..|+|++|++..++-....+.+                 .++.    .|+..
T Consensus       273 ~v~~~~~~~~~~~i~~~--L~~~gl~~~dId~~v~Hq~n~~~~~~~~~~L-----------------gl~~----ek~~~  329 (379)
T PLN02326        273 EVFKFAVRCVPQVIESA--LQKAGLTAESIDWLLLHQANQRIIDAVAQRL-----------------GIPP----EKVIS  329 (379)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHc-----------------CCCH----HHeee
Confidence            01100000 00122222  2222333445577999988755533322221                 2222    23332


Q ss_pred             hhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        738 GLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       738 sl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      .  + +++||+.+||+++.|..++++....  +| ++|+|+++|.|..
T Consensus       330 ~--l-~~~GNt~sAsi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~t  371 (379)
T PLN02326        330 N--L-ANYGNTSAASIPLALDEAVRSGKVK--KG-DVIATAGFGAGLT  371 (379)
T ss_pred             c--H-hhcCcHHHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEChhhe
Confidence            2  3 6999999999999999999865322  89 9999999999965

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs

Probab=98.96  E-value=5.5e-10  Score=126.99  Aligned_cols=254  Identities=16%  Similarity=0.061  Sum_probs=147.6

Q ss_pred             cccccceeeccccccchhHhhhhcCc--Cc----------ccccccccccccccCCC--c--------------------
Q psy11265        494 VGILGIEFYFPSQYVDQTELEKHDQV--SA----------GKYTIGLGQAKMGFCSD--L--------------------  539 (945)
Q Consensus       494 vGI~ai~~Y~P~~~l~~~el~~~~g~--d~----------gKy~~Glgq~~msv~~~--~--------------------  539 (945)
                      +.|.+++.|+|..+++++++.+.-+.  +.          .+.....|.+++.+..+  .                    
T Consensus         2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (361)
T cd00831           2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA   81 (361)
T ss_pred             cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhhH
Confidence            56899999999999999999886431  11          33344456666666554  2                    


Q ss_pred             -chhhhhhhc---------------------------------------cCcc--hhhHHH--HHHHHhHHHHHHHHhCc
Q psy11265        540 -EDINSICLT---------------------------------------LSIQ--CYLGAL--DACYQGYRAKAAKLTGK  575 (945)
Q Consensus       540 -EDivTma~~---------------------------------------Lsl~--~~~~~l--daCy~~~~~~~al~~a~  575 (945)
                       |++.+||+.                                       |++.  +....+  .+|.++..   |+..|.
T Consensus        82 ~~~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~~~~P~~a~~i~~~lgl~~~~~~~dv~~~~C~~~~~---al~~A~  158 (361)
T cd00831          82 LEEARELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAI---ALDLAK  158 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCCcccchhccccccchhHHH---HHHHHH
Confidence             479999988                                       6665  334444  38999884   667666


Q ss_pred             cccCCCcceeeecCCcceEEEec-c-cc-ccccc-ccc-ccCcccccchhhhH-----hh-------hcccCcccccccc
Q psy11265        576 ELSLGDFDAVLFHTPYCKLVQKS-L-AR-LAYND-FIS-ATDRSQYEGAEAFA-----HI-------KNLEDTYFNRDIE  638 (945)
Q Consensus       576 ~~~l~~~~~v~~~~p~~kLV~as-~-ar-y~~~~-~~~-~~E~tqgaGAvA~l-----~i-------~~~~~~~~s~d~~  638 (945)
                             +++..++..+.||+++ . .+ +...+ ... ......|+||+|++     ..       ..+. +.++..+.
T Consensus       159 -------~~~~~~~~~~aLvv~~e~~s~~~~~~d~~~~~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~-~~~~~~~p  230 (361)
T cd00831         159 -------DLLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELV-RAASTLLP  230 (361)
T ss_pred             -------HHHHHCCCCEEEEEEeecccceeCCCCcHHHhhhhhhccCCceEEEEEcCCCcccccccceeee-cccceeee
Confidence                   6677665555677665 3 33 11111 000 01345799999987     10       1111 22222111


Q ss_pred             cc-----ccccccccccccccccchhchHHhhhhhhHHHhhhhcccc--cCCcchHHHHHHhCCCccchHHHHHHhhhcc
Q psy11265        639 QY-----FMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDT--YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLE  711 (945)
Q Consensus       639 Df-----~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e  711 (945)
                      +.     |++.. .......+........+.+.  .+++.+  +...  ....+..++|++|++..++. +++...+   
T Consensus       231 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~i~~~--L~~~~~g~~~~did~~~~H~~~~~i~-~~v~~~l---  301 (361)
T cd00831         231 DSEDAMGWHLGE-EGLTFVLSRDVPRLVEKNLE--RVLRKL--LARLGIGLFKLAFDHWCVHPGGRAVL-DAVEKAL---  301 (361)
T ss_pred             cCCCceEEEEEc-ceEEEEeChhHHHHHHHHHH--HHHHHH--hccccCCCccccceEEEECCCChHHH-HHHHHHc---
Confidence            11     22210 01111112222222222222  233333  2222  33445678899999876553 3333221   


Q ss_pred             ccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        712 DTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                                   .++    .+++.+|...-++.||+++||++++|..++++...+  +| ++|++++||.|....
T Consensus       302 -------------gl~----~~~~~~s~~~l~~~GN~~sasi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~s~~  357 (361)
T cd00831         302 -------------GLS----PEDLEASRMVLRRYGNMSSSSVLYVLAYMEAKGRVK--RG-DRGLLIAFGPGFTCE  357 (361)
T ss_pred             -------------CCC----HHHHHHHHHHHHHhCCchhccHHHHHHHHHHhCCCC--CC-CEEEEEEEcCCceee
Confidence                         222    356666666679999999999999999999875422  89 999999999997643

PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.

>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.94  E-value=5.1e-09  Score=117.77  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=112.2

Q ss_pred             cccceeeeeeecCCccccHHHHHhh-------cCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhh
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKH-------DQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQI   79 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~-------~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~I   79 (945)
                      .+|+|.++..|+|+..|++++++++       .+.++.++....|..++.+..+.+++.+||..|++++|++.++++++|
T Consensus         4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~~I   83 (338)
T PRK09258          4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAGRKALAEAGIDPSDI   83 (338)
T ss_pred             cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEecCCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence            5699999999999999999999985       356777788788999999999999999999999999999999999999


Q ss_pred             cccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcc
Q psy11265         80 GQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLK  159 (945)
Q Consensus        80 g~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~  159 (945)
                      +.| .++|..   ......+  ........|+...++        ..+++.++|.|++.| |..|..+|+  +  ++.+.
T Consensus        84 d~l-i~~s~~---~~~~~p~--~a~~v~~~lgl~~~~--------~~~~v~~~C~~~~~a-l~~A~~~i~--~--g~~~~  144 (338)
T PRK09258         84 GLL-INTSVC---RDYLEPA--TACRVHHNLGLPKSC--------ANFDVSNACLGFLNG-MLDAANMIE--L--GQIDY  144 (338)
T ss_pred             CEE-EEEcCC---CCCCCCh--HHHHHHHHcCCCCCC--------ceeehhhhhHHHHHH-HHHHHHHHH--c--CCCCE
Confidence            998 787761   0111111  112233455554444        567888999999999 899999986  3  35688


Q ss_pred             eee-ecccc
Q psy11265        160 TLV-TKLSD  167 (945)
Q Consensus       160 ~LV-asdia  167 (945)
                      +|| ++|..
T Consensus       145 ~Lvv~~e~~  153 (338)
T PRK09258        145 ALVVSGESA  153 (338)
T ss_pred             EEEEEeccc
Confidence            998 88874

>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.86  E-value=3.3e-09  Score=118.54  Aligned_cols=142  Identities=18%  Similarity=0.116  Sum_probs=109.7

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      +++|+|.+|..|+|+..|+++|++++.+.+.++....+|..+..++.+.|+..+||+.|++++|++.++++++|+.| .+
T Consensus         2 ~~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~l-i~   80 (325)
T PRK12879          2 MSYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARAGLDAEDIDLI-IV   80 (325)
T ss_pred             CCCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EE
Confidence            57899999999999999999999999888777766678999999999999999999999999999999999999988 77


Q ss_pred             cCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      +|..- +...+  +  ........|+.. ++        ..+++.++|.|++.| |..|..+|+  +  ++...+|| ++
T Consensus        81 ~~~~~-~~~~~--~--~a~~l~~~lg~~-~~--------~~~~v~~~C~~~~~a-l~~A~~~l~--~--g~~~~~Lvv~~  141 (325)
T PRK12879         81 ATTTP-DYLFP--S--TASQVQARLGIP-NA--------AAFDINAACAGFLYG-LETANGLIT--S--GLYKKVLVIGA  141 (325)
T ss_pred             EcCCC-CCCCC--h--HHHHHHHHhCCC-CC--------cEEEECccchHHHHH-HHHHHHHHH--c--CCCCEEEEEEe
Confidence            76510 00000  0  111112334432 13        456777899999999 898999996  3  35678888 88


Q ss_pred             ccc
Q psy11265        165 LSD  167 (945)
Q Consensus       165 dia  167 (945)
                      |..
T Consensus       142 e~~  144 (325)
T PRK12879        142 ERL  144 (325)
T ss_pred             hhh
Confidence            863

>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems

Probab=98.84  E-value=1.2e-08  Score=113.50  Aligned_cols=140  Identities=19%  Similarity=0.187  Sum_probs=110.0

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      +|+|.+|..|+|+..++++|+++..|.+.+++...+|.++..++.+.|+...|++.|++++|++.++++++|+.| +++|
T Consensus         1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~l-i~~~   79 (320)
T cd00830           1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLI-IVAT   79 (320)
T ss_pred             CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEc
Confidence            689999999999999999999999998888888889999999999999999999999999999999999999988 7776


Q ss_pred             CcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         88 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      ....   ....+  ........++.. ++        ..+++.++|.+++.| |..|..+|+  +  ++...+|| ++|.
T Consensus        80 ~~~~---~~~~~--~~~~l~~~lg~~-~~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~--g~~~~vLvv~~e~  140 (320)
T cd00830          80 STPD---YLFPA--TACLVQARLGAK-NA--------AAFDINAACSGFLYG-LSTAAGLIR--S--GGAKNVLVVGAET  140 (320)
T ss_pred             CCCC---CCCCc--HHHHHHHHhCCC-CC--------cEeeccccchHHHHH-HHHHHHHHH--c--CCCCEEEEEEehh
Confidence            5100   00001  111122334432 33        456777899999999 888888886  3  35578888 8776


Q ss_pred             c
Q psy11265        167 D  167 (945)
Q Consensus       167 a  167 (945)
                      .
T Consensus       141 ~  141 (320)
T cd00830         141 L  141 (320)
T ss_pred             h
Confidence            3

It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.

>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional

Probab=98.79  E-value=6.5e-09  Score=116.66  Aligned_cols=140  Identities=12%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|+|.++..|+|+.+|+++|++++-+.+.+++...+|..+..++.+.|+...||+.|++++|++.+++|++|+.| +++
T Consensus         1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~aL~~ag~~~~dId~v-i~~   79 (326)
T CHL00203          1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAHMDPLEIDLI-ILA   79 (326)
T ss_pred             CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            5799999999999999999999999988777777788888889999999999999999999999999999999999 777


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |....  ..+   +. .......|+.. ++        ..+++.++|.|++.| |..|..+|+  ++  ....+|| ++|
T Consensus        80 s~~~~--~~~---~~-~~~v~~~Lg~~-~~--------~~~~v~~~Casg~~a-l~~A~~~i~--sg--~~~~~Lvv~~e  139 (326)
T CHL00203         80 TSTPD--DLF---GS-ASQLQAEIGAT-RA--------VAFDITAACSGFILA-LVTATQFIQ--NG--SYKNILVVGAD  139 (326)
T ss_pred             eCCCC--CCC---ch-HHHHHHHhCCC-CC--------ceeeecccchhHHHH-HHHHHHHHH--cC--CCCEEEEEEeh
Confidence            64100  011   11 11112334332 23        346888899999999 889999996  33  4578888 888


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      ..
T Consensus       140 ~~  141 (326)
T CHL00203        140 TL  141 (326)
T ss_pred             hh
Confidence            63

>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.79  E-value=8.6e-09  Score=115.63  Aligned_cols=141  Identities=18%  Similarity=0.170  Sum_probs=110.4

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      .+|+|.++..|+|...|++++|++..|.+.+++....|..+..+.. .|+...||..|++++|++.+++|++|+.| .++
T Consensus         3 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~-~~~~~~la~~Aa~~aL~~ag~~~~dId~l-i~~   80 (329)
T PRK07204          3 RYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDAKLTLDDIDCI-ICA   80 (329)
T ss_pred             CCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeecC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            5699999999999999999999999999888888889999999998 89999999999999999999999999988 777


Q ss_pred             CCcccccccccccchhhhhhcccccccC-ccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDG-NTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~G-n~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      |..     ...............|+..+ .+        .++++.++|.|++.| |..|..+++  +  ++.+++|| ++
T Consensus        81 ~~~-----~~~~~p~~a~~v~~~lgl~~~~~--------~~~~v~~~C~~~~~a-l~~a~~~l~--~--g~~~~~Lvv~~  142 (329)
T PRK07204         81 SGT-----IQQAIPCTASLIQEQLGLQHSGI--------PCFDINSTCLSFITA-LDTISYAIE--C--GRYKRVLIISS  142 (329)
T ss_pred             CCC-----CCCCCccHHHHHHHHhCCCCCCc--------eEEEccchhHHHHHH-HHHHHHHHH--C--CCCCEEEEEEe
Confidence            751     00000111111223455443 13        457888899999999 888888885  3  34577888 99


Q ss_pred             ccc
Q psy11265        165 LSD  167 (945)
Q Consensus       165 dia  167 (945)
                      |..
T Consensus       143 e~~  145 (329)
T PRK07204        143 EIS  145 (329)
T ss_pred             ccc
Confidence            875

>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=98.76  E-value=3.1e-09  Score=116.62  Aligned_cols=75  Identities=21%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             eee-ccccccccccccCcccCCCCCCc-cccCcc----hhHHHHHHHHHHHHhhhccCC-CCCCccccceee-eecCCCc
Q psy11265        182 EFT-RILAAKKENLHKYPFRSETPPGE-YLFDGS----YYLESIDDFHRRHYKKYEAGT-AWPENVGILGIE-FYFPSQY  253 (945)
Q Consensus       182 ~~~-~~~~~~~~~~~~~Df~rP~~~~~-~~vdG~----~YL~~ld~~~~~y~~r~~~~~-~~~~~~gi~a~e-i~fh~p~  253 (945)
                      +|+ ...+.  |+.|++|||||+..+| ++|||+    |||++++.||++|.+|..... .......+++++ ++||.||
T Consensus         2 v~d~~~~~~--~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py   79 (282)
T PF08540_consen    2 VFDRGLRGS--HMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPY   79 (282)
T ss_dssp             EEETTEEEE--EE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST--GGG-SEEEE--SS
T ss_pred             cccCCCcee--ehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccceEEEecCc
Confidence            566 35555  8899999999997766 689997    999999999999999974210 012345678888 9999999


Q ss_pred             ccccc
Q psy11265        254 VDQTE  258 (945)
Q Consensus       254 v~m~e  258 (945)
                      .||+.
T Consensus        80 ~klv~   84 (282)
T PF08540_consen   80 CKLVQ   84 (282)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            99986

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....

>PRK06840 hypothetical protein; Validated

Probab=98.74  E-value=1.4e-08  Score=114.47  Aligned_cols=143  Identities=13%  Similarity=0.161  Sum_probs=108.3

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      .||+|+|.++..|+|...|+.++|++..|.+.+++...+|..+..++.+.|+..+||+.|++++|++.+++|++|+.| +
T Consensus         1 ~~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~l-i   79 (339)
T PRK06840          1 MEMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVV-I   79 (339)
T ss_pred             CCCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-E
Confidence            378999999999999999999999999999888887789999999999999999999999999999999999999988 5


Q ss_pred             ccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-e
Q psy11265         85 VESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-T  163 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-a  163 (945)
                      +.+........|.    ........++.. ++        ..+++.++|.|++.| |..|..+|+  +. +..+.+|| +
T Consensus        80 ~~~~~~~~~~~p~----~a~~l~~~lGl~-~~--------~~~~v~~~C~~~~~a-l~~A~~~l~--~~-g~~~~~Lvv~  142 (339)
T PRK06840         80 YIGSEHKDYPVWS----SAPKIQHEIGAK-NA--------WAFDIMAVCASFPIA-LKVAKDLLY--SD-PSIENVLLVG  142 (339)
T ss_pred             EeccCCCCCCCCc----hHHHHHHHhCCC-Cc--------ccccccccchHHHHH-HHHHHHHHh--cC-CCccEEEEEe
Confidence            4432000000110    011122334432 23        457788999999999 999999996  21 23456777 6


Q ss_pred             cc
Q psy11265        164 KL  165 (945)
Q Consensus       164 sd  165 (945)
                      +|
T Consensus       143 ~~  144 (339)
T PRK06840        143 GY  144 (339)
T ss_pred             ec
Confidence            64

>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.74  E-value=4.7e-09  Score=120.40  Aligned_cols=84  Identities=21%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+..|++++|++..+|-....+.+.            +....++.    .|+-..+   .++||+++||++++|..+
T Consensus       286 gl~~~DId~~v~Hq~n~~~~~~v~~~l~------------~~~~gl~~----~k~~~~~---~~~GNt~sAsipi~L~~a  346 (378)
T PRK06816        286 NLDPDDIDYFLPHYSSEYFREKIVELLA------------KAGFMIPE----EKWFTNL---ATVGNTGSASIYIMLDEL  346 (378)
T ss_pred             CCChhhCCEEeeCcccHHHHHHHHHHHH------------hccCCCCh----hheEEec---cccccccchHHHHHHHHH
Confidence            4444566789999998776554444330            00001221    2222222   599999999999999999


Q ss_pred             hccCCccccCCCcEEEEEecCCCccc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +++...  .+| ++|+++++|||...
T Consensus       347 ~~~g~~--~~G-d~vl~~~~~s~~~~  369 (378)
T PRK06816        347 LNSGRL--KPG-QKILCFVPESGRFS  369 (378)
T ss_pred             HHcCCC--CCC-CEEEEEEecccchh
Confidence            987543  399 99999999998543

>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]

Probab=98.71  E-value=2.2e-08  Score=111.74  Aligned_cols=253  Identities=19%  Similarity=0.153  Sum_probs=151.5

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      +++.|.+++.|.|...++-+++++.-+.+.+-...-.|.+++.++.++|..-+||+.                       
T Consensus         2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT   81 (323)
T COG0332           2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLIIVAT   81 (323)
T ss_pred             CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            578999999999999999999998778888877778899999999999999999998                       


Q ss_pred             -----------------cCcch-hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cccc
Q psy11265        549 -----------------LSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~~-~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~  606 (945)
                                       |++.. ..+.+ -+|-|-.   +||..|.       .+|..+.-.+.||+.+  ++|+ +..|
T Consensus        82 ~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~---yaL~~A~-------~~i~sG~~k~vLVVg~e~~S~~ld~~d  151 (323)
T COG0332          82 STPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFL---YALSVAD-------GLIRSGGYKNVLVVGAETLSRILDWTD  151 (323)
T ss_pred             CCcccCCChHHHHHHHHhCCCCcceeechhhhHHHH---HHHHHHH-------HHHHcCCCCEEEEEehhHhhccCCHhh
Confidence                             44444 22222 3887655   5777776       5666665555799887  5554 3333


Q ss_pred             cccccCcccccchhhhH-hhhcccCccc----ccccccc---ccccccccc-cccc-cccchhchHHhhhhhhHHHhh--
Q psy11265        607 FISATDRSQYEGAEAFA-HIKNLEDTYF----NRDIEQY---FMSHNLYRT-RLAY-NDFISATDRTEYEGAEAFAHI--  674 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l-~i~~~~~~~~----s~d~~Df---~Rp~~~~~~-~~~~-g~~s~~~y~~~~~~~~a~~~~--  674 (945)
                        +..-..-|.||.|++ .=.+.+.+..    -.|-..+   +.|.+.... .... ..+......+=++  .|....  
T Consensus       152 --R~t~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk--~av~~~~~  227 (323)
T COG0332         152 --RDTCVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFK--FAVRAMPK  227 (323)
T ss_pred             --ccceEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHH--HHHHHHHH
Confidence              223344588888876 1111111111    1111111   111100001 0000 0111111111111  011111  


Q ss_pred             --h-hcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccch
Q psy11265        675 --K-NLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTP  751 (945)
Q Consensus       675 --~-~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTa  751 (945)
                        + .++......+..||++.|++..++-....+.+.                 .+    ..|+-..   -.+.||+.+|
T Consensus       228 ~~~~~L~~~~l~~~dId~~vpHQan~ri~~~i~~~l~-----------------~~----~~k~~~~---~~~yGNtsaA  283 (323)
T COG0332         228 AIEEVLEKAGLTPEDIDWFVPHQANLRIIEAIAKKLG-----------------IP----EEKVVVT---VDKYGNTSAA  283 (323)
T ss_pred             HHHHHHHHcCCCHHHCCEEccccccHHHHHHHHHHcC-----------------CC----HHHHhhH---HHHhcccccc
Confidence              1 133334455556777888777555433333331                 11    1223322   2789999999


Q ss_pred             hHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        752 SLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       752 Slyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      |+.++|..++.+...+  +| ++|+|..||.|..
T Consensus       284 siplaL~~~~~~g~ik--~G-d~ill~~fG~Glt  314 (323)
T COG0332         284 SIPLALDEALREGRIK--PG-DLVLLEAFGGGLT  314 (323)
T ss_pred             hHHHHHHHHhhhCCCC--CC-CEEEEEeecCcce
Confidence            9999999999987544  89 9999999999853

>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III

Probab=98.71  E-value=2.2e-08  Score=111.69  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=106.9

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |.|||.+|..|+|+.+++++++++..+.+..+.....|..+..++.+.|+...||+.|++++|++.+++|++|+.+ .++
T Consensus         1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~-i~~   79 (318)
T TIGR00747         1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENAGISKDDIDLI-IVA   79 (318)
T ss_pred             CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            4699999999999999999999999887766555557777888999999999999999999999999999999988 676


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      +...- ...+.    ........++..+ +        ..+++.++|.+++.| |..|..+|+  ++  ....+|| ++|
T Consensus        80 ~~~~~-~~~~~----~a~~l~~~lGl~~-~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~g--~~~~~Lvv~~e  140 (318)
T TIGR00747        80 TTTPD-HAFPS----AACMVQAYLGIKG-I--------PAFDLSAACAGFIYA-LSVAKQYIE--SG--KYKTVLVVGAE  140 (318)
T ss_pred             CCCCC-CCCCh----HHHHHHHHhCCCC-C--------cEeehhhhhHHHHHH-HHHHHHHHH--cC--CCCEEEEEEeh
Confidence            65110 00010    1112223344432 2        345777899999999 888999986  32  4578888 888


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      ..
T Consensus       141 ~~  142 (318)
T TIGR00747       141 KL  142 (318)
T ss_pred             hh
Confidence            64

Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.

>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III

Probab=98.67  E-value=2.4e-08  Score=114.57  Aligned_cols=140  Identities=13%  Similarity=0.093  Sum_probs=110.7

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      +++|+|.++..|.|...|+.+|+++..+.++.+.....|..+..++.+.|+...||+.|++++|++.++++++|+.| ++
T Consensus        45 ~~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~aL~~agi~~~dId~l-i~  123 (379)
T PLN02326         45 GSGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMAGVDPEDVDLV-LL  123 (379)
T ss_pred             cCCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EE
Confidence            46799999999999999999999999887777777778888899999999999999999999999999999999999 77


Q ss_pred             cCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      +|....  ..| .+   .......|+.. ++        ..+++.++|.|++.| |..|..+|+  +  ++...+|| ++
T Consensus       124 ~s~~~~--~~~-~~---a~~v~~~LG~~-~~--------~~~dv~~~Ca~~~~a-L~~A~~~l~--~--g~~~~vLVv~~  183 (379)
T PLN02326        124 CTSSPD--DLF-GS---APQVQAALGCT-NA--------LAFDLTAACSGFVLG-LVTAARFIR--G--GGYKNVLVIGA  183 (379)
T ss_pred             EeCCCC--ccC-cH---HHHHHHHhCCC-CC--------ceeeccccchHHHHH-HHHHHHHHH--c--CCCCEEEEEEe
Confidence            765110  112 11   11122444433 34        457888999999999 888888886  3  34678888 88


Q ss_pred             cc
Q psy11265        165 LS  166 (945)
Q Consensus       165 di  166 (945)
                      |.
T Consensus       184 e~  185 (379)
T PLN02326        184 DA  185 (379)
T ss_pred             ch
Confidence            86

>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.67  E-value=1.9e-08  Score=114.38  Aligned_cols=250  Identities=13%  Similarity=0.072  Sum_probs=143.5

Q ss_pred             ccccccccceeeccccccchhHh-hhhcCcC---cccccccccccccccCCCcchhhhhhhc------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTEL-EKHDQVS---AGKYTIGLGQAKMGFCSDLEDINSICLT------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el-~~~~g~d---~gKy~~Glgq~~msv~~~~EDivTma~~------------------  548 (945)
                      .++++|.+++.|+|..+++.+++ ++..+-+   ..|.....|..++.++.++|++.+||+.                  
T Consensus         5 ~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~   84 (353)
T PRK12880          5 FDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDA   84 (353)
T ss_pred             ccccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence            45789999999999999998864 4333221   2346677999999999999999999998                  


Q ss_pred             ----------------------cCcchhhHH--H-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccc
Q psy11265        549 ----------------------LSIQCYLGA--L-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LAR  601 (945)
Q Consensus       549 ----------------------Lsl~~~~~~--l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ar  601 (945)
                                            |+++....+  + .+|.++.   .+|+.|.       +|+..+... .||+.+  .++
T Consensus        85 lI~~t~t~d~~~P~~a~~v~~~Lg~~~~~~~~di~~~C~g~~---~aL~~A~-------~~i~~~~~~-~LVv~~e~~S~  153 (353)
T PRK12880         85 LIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYL---YGLFVAH-------SLIQSGLGK-ILLICGDTLSK  153 (353)
T ss_pred             EEEEcCCCCCCCCcHHHHHHHHhCCCCCceEEehhhhhHHHH---HHHHHHH-------HHHHcCCCC-EEEEEehhhhc
Confidence                                  677543333  3 5999988   4667666       777765544 777555  444


Q ss_pred             cc-ccccccccCcccccchhhhH--hhh------cccC-cccccccc----cccccccc----cc-----------cccc
Q psy11265        602 LA-YNDFISATDRSQYEGAEAFA--HIK------NLED-TYFNRDIE----QYFMSHNL----YR-----------TRLA  652 (945)
Q Consensus       602 y~-~~~~~~~~E~tqgaGAvA~l--~i~------~~~~-~~~s~d~~----Df~Rp~~~----~~-----------~~~~  652 (945)
                      .- +.+  .......|+||+|++  .-.      .+.+ +.+...+.    .+-+|...    ..           .-..
T Consensus       154 ~~~~~d--~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (353)
T PRK12880        154 FIHPKN--MNLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYM  231 (353)
T ss_pred             cCCccc--CCceeeecccceEEEEEecCCCCceEEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEE
Confidence            42 222  122456799999976  110      0000 11111110    00001000    00           0012


Q ss_pred             ccccchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHH
Q psy11265        653 YNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFE  732 (945)
Q Consensus       653 ~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~  732 (945)
                      +|......+.+.+.  .++..+  +.......+..|+|++|++-.++...-.+.+                 +++.    
T Consensus       232 ~g~~v~~~~~~~~~--~~i~~~--L~~~gl~~~did~~v~HQ~~~~i~~~i~~~L-----------------gl~~----  286 (353)
T PRK12880        232 DGANIFNMALECEP--KSFKEI--LEFSKVDEKDIAFHLFHQSNAYLVDCIKEEL-----------------KLND----  286 (353)
T ss_pred             cCHHHHHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHh-----------------CCCH----
Confidence            23222222222221  233333  1222344455678999988855543322222                 2222    


Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .|+ +. .+-++.||+-++|+.+.|.-++...      + -+++|.++|-|..-.
T Consensus       287 ek~-~~-~~l~~~GNtssasip~~L~~~~~~~------~-~~~ll~~~G~G~s~g  332 (353)
T PRK12880        287 DKV-PN-FIMEKYANLSACSLPALLCELDTPK------E-FKASLSAFGAGLSWG  332 (353)
T ss_pred             HHh-hh-hhHHhhCCHHHHHHHHHHHHHHHcC------C-cEEEEEEEchhhhhe
Confidence            223 11 2237899999999999999988653      2 468999999986543

>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

Probab=98.66  E-value=3.4e-08  Score=110.04  Aligned_cols=139  Identities=24%  Similarity=0.267  Sum_probs=102.8

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      .|||.+|..|+|+.+|+.++|++..+.+.-+..+|+.|..  |..+.++...|+..|++++|++.++++++|+.| .+++
T Consensus         1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~--~~~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~l-i~~~   77 (324)
T cd00827           1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRH--MAGDDEDVPTMAVEAARRALERAGIDPDDIGLL-IVAT   77 (324)
T ss_pred             CccEEEEEecCCceeecHHHHHHHhCCCcceeeeecceeE--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEc
Confidence            4899999999999999999999999877555555555555  555689999999999999999999999999998 7777


Q ss_pred             CcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         88 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +.-    .+. ...........++.. ++        ..+++.++|.|+..| |..|..+|+  +  ++...+|| ++|.
T Consensus        78 ~~~----~~~-~~~~~~~i~~~lg~~-~~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~--g~~~~vlvv~~e~  138 (324)
T cd00827          78 ESP----IDK-GKSAATYLAELLGLT-NA--------EAFDLKQACYGGTAA-LQLAANLVE--S--GPWRYALVVASDI  138 (324)
T ss_pred             CCC----CCC-CccHHHHHHHHcCCC-CC--------ceeehhhhhHHHHHH-HHHHHHHHH--c--CCCCEEEEEEEHH
Confidence            610    000 000111112333332 33        457888999999999 888999986  3  24578888 8887


Q ss_pred             cc
Q psy11265        167 DV  168 (945)
Q Consensus       167 a~  168 (945)
                      ..
T Consensus       139 ~~  140 (324)
T cd00827         139 AS  140 (324)
T ss_pred             hh
Confidence            54

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.

>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.57  E-value=2.9e-07  Score=102.66  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=103.4

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      ++|+|.+|..|+|+..+++++++++.|.+..+..-..|..+..++.+.++...|++.|++++|++.++++++|+.+ .++
T Consensus         2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~id~v-i~~   80 (319)
T PRK09352          2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLI-IVA   80 (319)
T ss_pred             CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            5799999999999999999999999887655543345666667888899999999999999999999999999988 677


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |....  ..+. +  ........++.. ++        ..+.+.++|.+++.| |..|..+|+  +  ++...+|| ++|
T Consensus        81 ~~~~~--~~~~-~--~~~~i~~~lG~~-~~--------~~~~v~~~Casg~~a-l~~A~~~i~--~--g~~~~vLvv~~e  141 (319)
T PRK09352         81 TTTPD--YAFP-S--TACLVQARLGAK-NA--------AAFDLSAACSGFVYA-LSTADQFIR--S--GAYKNVLVIGAE  141 (319)
T ss_pred             cCCCC--CCCc-h--HHHHHHHHhCCC-CC--------cEeeccccchhHHHH-HHHHHHHHH--c--CCCCEEEEEEeh
Confidence            66110  0011 0  011112334432 22        345667899999999 888888886  3  35688888 888


Q ss_pred             c
Q psy11265        166 S  166 (945)
Q Consensus       166 i  166 (945)
                      .
T Consensus       142 ~  142 (319)
T PRK09352        142 K  142 (319)
T ss_pred             h
Confidence            6

>PLN03169 chalcone synthase family protein; Provisional

Probab=98.31  E-value=5.6e-07  Score=103.87  Aligned_cols=262  Identities=13%  Similarity=0.046  Sum_probs=139.8

Q ss_pred             CCccccccccceeeccccccchhHhhhh-c---C-cCcc---c---ccccccccccccCC--------------------
Q psy11265        489 QWPENVGILGIEFYFPSQYVDQTELEKH-D---Q-VSAG---K---YTIGLGQAKMGFCS--------------------  537 (945)
Q Consensus       489 ~~~~~vGI~ai~~Y~P~~~l~~~el~~~-~---g-~d~g---K---y~~Glgq~~msv~~--------------------  537 (945)
                      ..|..+.|.+|+.|+|...++++++.+. .   . .++.   +   .....|.+++.++.                    
T Consensus        17 ~~~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~   96 (391)
T PLN03169         17 ANPGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIK   96 (391)
T ss_pred             CCCCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHH
Confidence            3456788999999999999999998874 1   1 1121   1   22224555555553                    


Q ss_pred             -----Ccchhhhhhhc---------------------------------------cCcchhh-HHH---HHHHHhHHHHH
Q psy11265        538 -----DLEDINSICLT---------------------------------------LSIQCYL-GAL---DACYQGYRAKA  569 (945)
Q Consensus       538 -----~~EDivTma~~---------------------------------------Lsl~~~~-~~l---daCy~~~~~~~  569 (945)
                           ..|.+.+||+.                                       |+++..+ ++.   .+|+++.   .
T Consensus        97 ~r~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~l~~~LGl~~~~~~~~d~~~gC~g~~---~  173 (391)
T PLN03169         97 QRLDIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLGLSPDVQRVMLYFLGCSGGV---A  173 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcCCCCCCcHHHHHHHHhCcCCcceeeecccChhHHHH---H
Confidence                 26789999988                                       6665433 223   5999888   4


Q ss_pred             HHHhCccccCCCcceeeecCCcceEEEec-cccccccc--cc----cccCcccccchhhhH-hhhcc---cCc--ccccc
Q psy11265        570 AKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYND--FI----SATDRSQYEGAEAFA-HIKNL---EDT--YFNRD  636 (945)
Q Consensus       570 al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~--~~----~~~E~tqgaGAvA~l-~i~~~---~~~--~~s~d  636 (945)
                      +|..|.       +|+..++..++||+.+ +..+.+..  ..    .......|+||+|++ .=.+.   ..+  ....+
T Consensus       174 aL~~A~-------~~~~~~~~~~vLvv~~e~~s~~~~~~~~~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~  246 (391)
T PLN03169        174 GLRVAK-------DIAENNPGSRVLLTTSETTILGFRPPSPDRPYDLVGAALFGDGAAAVIIGADPIPVSESPFFELHTA  246 (391)
T ss_pred             HHHHHH-------HHHHhCCCCeEEEEEEEcChhhccCCCccchhhhhhhhhccCceEEEEEecCCCcccCCcceEEEee
Confidence            777776       7777665556788776 53332221  00    012345688998876 10000   000  00001


Q ss_pred             ccccccccccc---------cccccccccchhchHHhhhhhhHHHhhhhcccccCCcchHH--HHHHhCCCccchHHHHH
Q psy11265        637 IEQYFMSHNLY---------RTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQ--YFMSHNRTEYEGAEAFA  705 (945)
Q Consensus       637 ~~Df~Rp~~~~---------~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~H~p~~~m~~~a~~  705 (945)
                      ..++. |....         ......|...-....+.+.  ..++.+  ++......+..|  +|++|+...++- +++.
T Consensus       247 ~~~~i-p~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~--~~i~~~--L~~~gl~~~did~~~~v~Hq~n~~il-~~v~  320 (391)
T PLN03169        247 IQQFL-PGTEKTIDGRLTEEGINFKLGRELPQKIEDNIE--GFCKKL--MKKAGLVEKDYNDLFWAVHPGGPAIL-NRLE  320 (391)
T ss_pred             eeeEc-CCCccccCceecCCceEEEECcHHHHHHHHHHH--HHHHHH--HHHcCCCCCCCCcceEEecCCCHHHH-HHHH
Confidence            11111 20000         0001112211111111111  122233  222223222233  688997774443 2222


Q ss_pred             HhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCcc-ccCCCcEEEEEecCCCc
Q psy11265        706 HIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWE-RLQGMSRIGLFSYGSDN  784 (945)
Q Consensus       706 ~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~-~L~G~~rI~l~s~GsG~  784 (945)
                      ..|                +++    ..|+..|-..-++.|||-++|+.+.|-.+++..... .-+| ++++|++||.|.
T Consensus       321 ~~L----------------gl~----~ek~~~s~~~l~~~GNtsSasip~~L~~~~~~~~~~~~~~g-d~~ll~afG~G~  379 (391)
T PLN03169        321 KKL----------------KLA----PEKLECSRRALMDYGNVSSNTIVYVLEYMREELKKKGEEDE-EWGLILAFGPGI  379 (391)
T ss_pred             HHc----------------CCC----HHHHHHHHHHHHHhCCchHhHHHHHHHHHHHhhcccCCCCC-cEEEEEEEcccH
Confidence            211                222    244555534448999999999999999888653211 1268 999999999997


Q ss_pred             ccc
Q psy11265        785 IKA  787 (945)
Q Consensus       785 ~~~  787 (945)
                      ...
T Consensus       380 s~~  382 (391)
T PLN03169        380 TFE  382 (391)
T ss_pred             hHH
Confidence            543

>PLN03169 chalcone synthase family protein; Provisional

Probab=98.29  E-value=6.8e-07  Score=103.18  Aligned_cols=143  Identities=16%  Similarity=0.111  Sum_probs=101.0

Q ss_pred             CcccceeeeeeecCCccccHHHHHhh-cC----CCcc---c---ch--hccCCccccCCC--------------------
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKH-DQ----VSAG---K---YT--IGLGQAKMGFCS--------------------   52 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~-~g----v~~~---K---yt--~GLGq~~m~~~~--------------------   52 (945)
                      |.++-|.+|..|+|++.|+|+|+.++ ..    .++.   +   .-  .|+-+..++...                    
T Consensus        19 ~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r   98 (391)
T PLN03169         19 PGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQR   98 (391)
T ss_pred             CCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHH
Confidence            56689999999999999999999985 21    1221   1   11  355555544322                    


Q ss_pred             ---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh
Q psy11265         53 ---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK  129 (945)
Q Consensus        53 ---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~  129 (945)
                         ..|....||..|++++|++.++++++|+.| ++.|..     .+..-+ ........|+++..+       .+++++
T Consensus        99 ~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~l-I~~t~t-----~~~~P~-~a~~l~~~LGl~~~~-------~~~~d~  164 (391)
T PLN03169         99 LDIANEAVTQMAVEASLACIKEWGRPVSDITHL-VYVSSS-----EARLPG-GDLYLAKQLGLSPDV-------QRVMLY  164 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEE-EEECcC-----CCCCCc-HHHHHHHHhCcCCcc-------eeeecc
Confidence               278899999999999999999999999998 777771     111111 111222445543322       356899


Q ss_pred             hhhhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        130 YSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       130 k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      ..+|.|++.| |..|..+++  +  ++.+++|| ++|..
T Consensus       165 ~~gC~g~~~a-L~~A~~~~~--~--~~~~~vLvv~~e~~  198 (391)
T PLN03169        165 FLGCSGGVAG-LRVAKDIAE--N--NPGSRVLLTTSETT  198 (391)
T ss_pred             cChhHHHHHH-HHHHHHHHH--h--CCCCeEEEEEEEcC
Confidence            9999999999 999999996  3  36789998 98874

>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]

Probab=98.29  E-value=1.2e-06  Score=98.08  Aligned_cols=140  Identities=19%  Similarity=0.194  Sum_probs=113.2

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      ++++|.++.-|.|..-|.-.||++.-+.+..-...=.|-.+..++.+.|..-+||..||+++|++.+++|++|+.| +++
T Consensus         2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlI-I~a   80 (323)
T COG0332           2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLI-IVA   80 (323)
T ss_pred             CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            5789999999999999999999988888887776667888889999999999999999999999999999999999 888


Q ss_pred             CCccccccccccc-chhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         87 SPEEYEQESWQLT-EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        87 Te~~~~~s~wd~s-~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      |-     +. |.. ..........|+..+ +        -++++..||-|.+.| |..|-.+|+  ++  .-+++|| ++
T Consensus        81 T~-----tp-d~~~Ps~A~~vq~~LG~~~-~--------~afDl~aaCsgf~ya-L~~A~~~i~--sG--~~k~vLVVg~  140 (323)
T COG0332          81 TS-----TP-DHLFPSTACLVQARLGLGG-A--------PAFDLQAACSGFLYA-LSVADGLIR--SG--GYKNVLVVGA  140 (323)
T ss_pred             cC-----Cc-ccCCChHHHHHHHHhCCCC-c--------ceeechhhhHHHHHH-HHHHHHHHH--cC--CCCEEEEEeh
Confidence            87     11 111 111111124465544 4        678999999999999 999999997  43  4577999 98


Q ss_pred             ccc
Q psy11265        165 LSD  167 (945)
Q Consensus       165 dia  167 (945)
                      |+-
T Consensus       141 e~~  143 (323)
T COG0332         141 ETL  143 (323)
T ss_pred             hHh
Confidence            885

>PLN03171 chalcone synthase-like protein; Provisional

Probab=98.18  E-value=2e-06  Score=99.59  Aligned_cols=140  Identities=13%  Similarity=0.102  Sum_probs=99.8

Q ss_pred             cceeeeeeecCCccccHHHHHhhc-CC--Ccc---------cchhccCCccccCCCCC----------------------
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHD-QV--SAG---------KYTIGLGQAKMGFCSDL----------------------   54 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~-gv--~~~---------Kyt~GLGq~~m~~~~~~----------------------   54 (945)
                      +-|.+|..|+|...|+|++++++. ..  +.+         +...-.|-++..++.+.                      
T Consensus        23 ~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~  102 (399)
T PLN03171         23 AAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARLD  102 (399)
T ss_pred             cEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHHH
Confidence            559999999999999999999872 21  111         22233466666666554                      


Q ss_pred             ---ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         55 ---EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        55 ---EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                         |....||+.|++++|++.++++++|+.| +++|...      +...-........|+....       ..+.++..+
T Consensus       103 ~~~~~a~~la~~Aa~~aL~~ag~~~~dId~l-i~~t~t~------~~~P~~a~~v~~~LGl~~~-------~~~~~~~~~  168 (399)
T PLN03171        103 IAADAVPELAAEAAKKAIAEWGRPAADITHL-VVTTNSG------AHIPGVDFRLVPLLGLRPS-------VRRTMLHLN  168 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcCCC------CCCCchHHHHHHHhCCCcc-------cceeeccCC
Confidence               5899999999999999999999999999 8888821      1111111122244554322       224567888


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      +|.|++.+ |..|..+++  +  ++.+++|| ++|+.
T Consensus       169 gC~g~~~a-L~~A~~li~--~--~~~~~vLVv~~e~~  200 (399)
T PLN03171        169 GCFAGAAA-LRLAKDLAE--N--NRGARVLVVAAEIT  200 (399)
T ss_pred             ccHHHHHH-HHHHHHHHH--h--CCCCeEEEEEEecc
Confidence            99999999 999999886  2  46789998 98873

>TIGR00115 tig trigger factor

Probab=98.18  E-value=8.3e-06  Score=94.68  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .+..|+.|+|+|+|+.   +|+.|+++.  .+|+.|.+|.+.+++||+.+|.+|++|++..|.++...  .|+.      
T Consensus       146 ~~~~gD~V~v~~~~~~---dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~--~~~~------  212 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI---DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPE--DYHA------  212 (408)
T ss_pred             ccCCCCEEEEEEEEEE---CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCcc--ccCc------
Confidence            3577999999999987   899999874  47999999999999999999999999999999997654  4443      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESP  418 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p  418 (945)
                             .                        --+|.++.|+|+|.+|.++
T Consensus       213 -------~------------------------~~~gk~~~f~v~i~~I~~~  232 (408)
T TIGR00115       213 -------E------------------------ELAGKEATFKVTVKEVKEK  232 (408)
T ss_pred             -------c------------------------cCCCCeEEEEEEEEEeccC
Confidence                   0                        1257899999999999873

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.15  E-value=2.2e-06  Score=98.49  Aligned_cols=141  Identities=11%  Similarity=0.118  Sum_probs=99.2

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccc---------hhccCCccccCCCC---CccHHHHHHHHHHHHHHhccC
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKY---------TIGLGQAKMGFCSD---LEDINSICLTVVSNLMKRYEL   74 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Ky---------t~GLGq~~m~~~~~---~EDivsla~~a~~~Ll~~~~~   74 (945)
                      |+|+|.+|..|+|...|++++++++-+..+++.         ..|+-+..++...+   .+....||..|++++|++.++
T Consensus         1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~agi   80 (378)
T PRK06816          1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDAGF   80 (378)
T ss_pred             CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            579999999999999999999998876544322         23666666554432   357899999999999999999


Q ss_pred             CHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeeccc
Q psy11265         75 DYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA  154 (945)
Q Consensus        75 ~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~  154 (945)
                      +|++|+.| +++|..   ...+..+  ........|+.. ++        ..+++..+|.|+..| |..|..+|+  +  
T Consensus        81 ~~~dId~l-i~~s~~---~~~~~p~--~a~~v~~~Lgl~-~~--------~~~~v~~~Cas~~~a-l~~A~~~i~--s--  140 (378)
T PRK06816         81 SLGDIELL-ACGTSQ---PDQLMPG--HASMVHGELGAP-PI--------EVVSSAGVCAAGMMA-LKYAYLSVK--A--  140 (378)
T ss_pred             CHHHCCEE-EEEECC---CCcCChH--HHHHHHhhCCCC-CC--------ceeeecCcCHHHHHH-HHHHHHHHH--C--
Confidence            99999998 777651   0000000  001112234332 23        456788899999999 888888886  3  


Q ss_pred             CCCcceee-ecccc
Q psy11265        155 VDTLKTLV-TKLSD  167 (945)
Q Consensus       155 ~~~~~~LV-asdia  167 (945)
                      ++...+|| ++|..
T Consensus       141 g~~~~vLvv~~E~~  154 (378)
T PRK06816        141 GESRNAVATASELA  154 (378)
T ss_pred             CCCCEEEEEeEccc
Confidence            35678888 88875

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs

Probab=98.14  E-value=1.9e-06  Score=98.28  Aligned_cols=139  Identities=14%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             cceeeeeeecCCccccHHHHHhhcCC-Cc-----------ccch--hccCCccccCCC-CC-------------------
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQV-SA-----------GKYT--IGLGQAKMGFCS-DL-------------------   54 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~gv-~~-----------~Kyt--~GLGq~~m~~~~-~~-------------------   54 (945)
                      +-|.++..|+|+..|++++++++-+- .+           .+..  .|+-+..+.... +.                   
T Consensus         2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (361)
T cd00831           2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA   81 (361)
T ss_pred             cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhhH
Confidence            56999999999999999999997532 11           2222  344444444431 11                   


Q ss_pred             -ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh-hh
Q psy11265         55 -EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY-ST  132 (945)
Q Consensus        55 -EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k-~a  132 (945)
                       |+...||..|++++|++.+++|++|+.| +++|.     +.+. .....+.....|+...++        ..+++. .+
T Consensus        82 ~~~~~~la~~Aa~~aL~~a~~~~~~Id~l-i~~s~-----~~~~-~P~~a~~i~~~lgl~~~~--------~~~dv~~~~  146 (361)
T cd00831          82 LEEARELAEEAARGALDEAGLRPSDIDHL-VVNTS-----TGNP-TPSLDAMLINRLGLRPDV--------KRYNLGGMG  146 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHCCEE-EEECC-----CCCC-CCCHHHHHHHHhCCCccc--------chhcccccc
Confidence             4899999999999999999999999999 77776     1111 111111222455655455        678998 79


Q ss_pred             hhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        133 ALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       133 cyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      |.|++.| |..|..+++  +  ++.+++|| ++|..
T Consensus       147 C~~~~~a-l~~A~~~~~--~--~~~~~aLvv~~e~~  177 (361)
T cd00831         147 CSAGAIA-LDLAKDLLE--A--NPGARVLVVSTELC  177 (361)
T ss_pred             chhHHHH-HHHHHHHHH--H--CCCCEEEEEEeecc
Confidence            9999999 999999986  3  35688998 88864

PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.

>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=98.10  E-value=3.1e-06  Score=96.99  Aligned_cols=80  Identities=8%  Similarity=-0.078  Sum_probs=52.5

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+.-|||++|++-.++.....+.++                ....+  ..+.   ..+-.+.||+.++|+++.|..+
T Consensus       285 gl~~~dId~~~~Hq~~~~~~d~~~~~ll----------------g~~~~--~~~~---~~~~~~~GNt~sasi~~~L~~~  343 (372)
T PRK07515        285 GLTPADVKRFWLHQANINMNQLIGKKVL----------------GRDAT--PEEA---PVILDEYANTSSAGSIIAFHKH  343 (372)
T ss_pred             CCCHHHCCEEEECCCCHHHHHHHHHHhc----------------cCCCC--hhhc---eEeHHhcCCchhhHHHHHHHHH
Confidence            3444555778999888776554444332                00000  0111   1134899999999999999998


Q ss_pred             hccCCccccCCCcEEEEEecCCCccc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +...    .+| ++|+|+++|.|...
T Consensus       344 ~~~~----~~G-d~vll~~~G~G~~~  364 (372)
T PRK07515        344 SDDL----AAG-DLGVICSFGAGYSI  364 (372)
T ss_pred             hccC----CCC-CEEEEEEecccHHH
Confidence            6432    289 99999999999753

>PRK01490 tig trigger factor; Provisional

Probab=97.99  E-value=3.2e-05  Score=90.64  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .+..|+.|+|+|+|+.   +|+.|+++.  .+++.|.+|.+.+++||+.+|.+|++|++..|.++...  .|+.      
T Consensus       157 ~~~~gD~V~vd~~~~~---~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~--~~~~------  223 (435)
T PRK01490        157 PAENGDRVTIDFVGSI---DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPE--DYHA------  223 (435)
T ss_pred             cCCCCCEEEEEEEEEE---CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcc--cccc------
Confidence            3578999999999998   899999764  47899999999999999999999999999999886544  3443      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             .                        --+|.++.|+|+|.+|..
T Consensus       224 -------~------------------------~lagk~~~f~v~v~~V~~  242 (435)
T PRK01490        224 -------E------------------------DLAGKEATFKVTVKEVKE  242 (435)
T ss_pred             -------c------------------------cCCCCeEEEEEEEEEecc
Confidence                   0                        124788999999999987

>PLN03171 chalcone synthase-like protein; Provisional

Probab=97.55  E-value=8.6e-05  Score=86.16  Aligned_cols=55  Identities=15%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccCCccccCC--CcEEEEEecCCCcccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQG--MSRIGLFSYGSDNIKA  787 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G--~~rI~l~s~GsG~~~~  787 (945)
                      .|+..|-..-++.|||-++|+++.|.-++.+.....-+|  -++|+|++||-|....
T Consensus       332 ek~~~s~~~l~~yGNtssaSip~~L~~~~~~~~~~~~~G~~~d~vll~~fG~Glt~~  388 (399)
T PLN03171        332 EKLAASRRVLSDYGNMFGATVIFALDELRRQMEEAAAAGAWPELGVMMAFGPGLTVD  388 (399)
T ss_pred             HHhHHHHHHHHHhCcchhhhHHHHHHHHHhhHhhcCCCCCCcceEEEEEEcccHHHH
Confidence            455555334489999999999999999986532101132  1689999999996544

>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=97.50  E-value=0.00016  Score=82.87  Aligned_cols=138  Identities=15%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcC------------------------CCcccchhccCCccccCCCCC---------
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQ------------------------VSAGKYTIGLGQAKMGFCSDL---------   54 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~g------------------------v~~~Kyt~GLGq~~m~~~~~~---------   54 (945)
                      +|.|.++..|+|+..|+++||++.-+                        .+..+...-.|.....+..+.         
T Consensus         2 ~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~   81 (372)
T PRK07515          2 NVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRMR   81 (372)
T ss_pred             CcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCcccccC
Confidence            68999999999999999999987621                        122333222344444443321         


Q ss_pred             -----------ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcc
Q psy11265         55 -----------EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNI  123 (945)
Q Consensus        55 -----------EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~  123 (945)
                                 +....|++.|++++|++.++++++|+.| .++|...  ...|....   ......|...+.        
T Consensus        82 ~~~~~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~Id~l-i~~~~~~--~~~~p~~a---~~v~~~Lgl~~~--------  147 (372)
T PRK07515         82 PRIPERSNDELSIQAEMGVAAARQALARAGRTAEDIDAV-IVACSNM--QRAYPAMA---IEIQQALGIEGF--------  147 (372)
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHcCCCHHHCCEE-EEECCCC--CCCCcHHH---HHHHHhcCCCCc--------
Confidence                       1346799999999999999999999988 6776510  01111111   111233443322        


Q ss_pred             hhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        124 QGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       124 ~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                        .+++..+|.|+..| |..|..+|+  +  +....+|| ++|.
T Consensus       148 --~~~v~~aCasg~~a-l~~A~~~i~--~--g~~~~vLvv~~e~  184 (372)
T PRK07515        148 --AFDMNVACSSATFG-IQTAANAIR--S--GSARRVLVVNPEI  184 (372)
T ss_pred             --EEEecchhHHHHHH-HHHHHHHHH--c--CCCCEEEEEeeec
Confidence              36777899999999 888889986  3  35678888 7776

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00039  Score=81.39  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEE--EecCCccccCCccchhh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF--VCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~--~i~pe~~~aYG~~~~~l  366 (945)
                      ...||.|+|.|.|+.   ||..|+.-.  .+-+.|.||.|+.|||||.+|.+|++||...+  +.|.+|    ..     
T Consensus       158 a~~gD~v~IDf~g~i---Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy----~a-----  223 (441)
T COG0544         158 AENGDRVTIDFEGSV---DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDY----HA-----  223 (441)
T ss_pred             cccCCEEEEEEEEEE---cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEccccc----ch-----
Confidence            678999999999987   899998753  36799999999999999999999999999774  456665    21     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHH
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAE  432 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eE  432 (945)
                              .                        --+|.+..|.|+|..|.+     ++.=+|+++-
T Consensus       224 --------~------------------------~LaGK~a~F~V~vkeVk~-----~elpEldDEf  252 (441)
T COG0544         224 --------E------------------------ELAGKEATFKVKVKEVKK-----RELPELDDEF  252 (441)
T ss_pred             --------h------------------------HhCCCceEEEEEEEEEee-----cCCCCCCHHH
Confidence                    0                        124778999999999987     3444555443

>PLN03168 chalcone synthase; Provisional

Probab=97.31  E-value=0.00023  Score=82.43  Aligned_cols=139  Identities=11%  Similarity=0.098  Sum_probs=96.1

Q ss_pred             cceeeeeeecCCccccHHHHHhhcC-C-----Ccc---cch-----hccCCccccCCCC---------------------
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQ-V-----SAG---KYT-----IGLGQAKMGFCSD---------------------   53 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~g-v-----~~~---Kyt-----~GLGq~~m~~~~~---------------------   53 (945)
                      +-|.+|.-..|++++.|+++.++-. +     .+.   |+.     -||-...+.+..+                     
T Consensus        16 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~~   95 (389)
T PLN03168         16 ACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRHD   95 (389)
T ss_pred             eEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHHH
Confidence            4599999999999999999887741 1     121   232     1444444433220                     


Q ss_pred             --CccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         54 --LEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        54 --~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                        .|....||..|++++|++.++++++|+.| +|.|.     +... ..-........|++++       +..|++++..
T Consensus        96 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~l-I~~T~-----Tg~~-~Ps~a~~l~~~LGl~~-------~~~r~~d~~~  161 (389)
T PLN03168         96 IVVVQVPKLAAEAAQKAIKEWGGRKSDITHI-VFATT-----SGVN-MPGADHALAKLLGLKP-------TVKRVMMYQT  161 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEECC-----CCCC-CccHHHHHHHHhCcCC-------cceeeeeeCC
Confidence              12578999999999999999999999999 88888     1111 1111112224455432       2346789999


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +|+|+..| |..|..+++  +  ++.+++|| ++++
T Consensus       162 gC~g~~~a-L~~A~~~i~--~--~~~~~VLVV~~E~  192 (389)
T PLN03168        162 GCFGGASV-LRVAKDLAE--N--NKGARVLAVASEV  192 (389)
T ss_pred             ccHHHHHH-HHHHHHHHH--h--CCCCEEEEEEEeh
Confidence            99999999 999999996  2  47899998 8775

>PLN03170 chalcone synthase; Provisional

Probab=97.23  E-value=0.00036  Score=81.09  Aligned_cols=139  Identities=11%  Similarity=0.008  Sum_probs=92.0

Q ss_pred             cceeeeeeecCCccccHHHHHhhcC-------CCcc--cchh---ccCCccccCCC--------------------CCcc
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQ-------VSAG--KYTI---GLGQAKMGFCS--------------------DLED   56 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~g-------v~~~--Kyt~---GLGq~~m~~~~--------------------~~ED   56 (945)
                      .-|.+|...+|++.+.|+++.++-.       ....  |+..   .=|-++..++-                    .+.|
T Consensus        21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~  100 (401)
T PLN03170         21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD  100 (401)
T ss_pred             eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence            4599999999999999998777631       1111  2211   11333322222                    1223


Q ss_pred             HH-----HHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         57 IN-----SICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        57 iv-----sla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                      +.     .||..|++++|++.++++++|+.| ++.|.     +.++.-+ ........|+.++       ...|++++..
T Consensus       101 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~l-I~~T~-----Tg~~~Ps-~a~~l~~~LGl~~-------~~~r~~d~~~  166 (401)
T PLN03170        101 IVVVEVPKLGKAAAQKAIKEWGQPKSKITHL-VFCTT-----SGVDMPG-ADYQLTKMLGLRP-------SVNRLMMYQQ  166 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcc-----CCCCCCh-HHHHHHHHhCcCc-------ccHHHHhhcC
Confidence            33     499999999999999999999988 77777     2222111 1112223444432       2347899999


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +|+|++.+ |..|..+++    .++.+++|| ++++
T Consensus       167 gC~G~~~a-L~~A~~l~~----~~~~~~vLVV~~E~  197 (401)
T PLN03170        167 GCFAGGTV-LRVAKDLAE----NNRGARVLVVCSEI  197 (401)
T ss_pred             hhHHHHHH-HHHHHHHHH----cCCCCeEEEEEEeh
Confidence            99999999 999999886    246789998 8765

>PLN03172 chalcone synthase family protein; Provisional

Probab=97.23  E-value=0.00032  Score=81.29  Aligned_cols=140  Identities=11%  Similarity=-0.005  Sum_probs=92.3

Q ss_pred             cceeeeeeecCCccccHHHHHhhcC-------CCcc--cchh---ccCCccccCCC--------------------CCcc
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQ-------VSAG--KYTI---GLGQAKMGFCS--------------------DLED   56 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~g-------v~~~--Kyt~---GLGq~~m~~~~--------------------~~ED   56 (945)
                      +-|.+|...+|++.+.|+|+.++-.       ....  |+..   .=|-++.-++.                    .+.|
T Consensus        17 ~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~   96 (393)
T PLN03172         17 ATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQD   96 (393)
T ss_pred             eEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHHH
Confidence            4599999999999999999887632       1111  1110   11333222211                    1222


Q ss_pred             -----HHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         57 -----INSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        57 -----ivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                           .+.||+.|++++|++.++++++|+.| ++.|.     +.++. .-........|+.++..       .+.+++..
T Consensus        97 ~~~~~a~~La~~Aa~~aL~~ag~~~~dId~i-i~~t~-----t~~~~-P~~a~~l~~~LGl~~~~-------~~~~~~~~  162 (393)
T PLN03172         97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHL-VFCTT-----SGVDM-PGADYQLTKLLGLKPSV-------KRFMMYQQ  162 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcc-----CCCcC-chHHHHHHHHhCCCCCc-------eEEeeeCC
Confidence                 34899999999999999999999988 78887     22221 11112222445543322       34567788


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      +|+|++.+ |..|..+++  +  ++.+++|| ++++.
T Consensus       163 gC~g~~~a-L~~A~~~~~--~--~~~~~vLVV~~E~~  194 (393)
T PLN03172        163 GCFAGGTV-LRLAKDLAE--N--NAGSRVLVVCSEIT  194 (393)
T ss_pred             chHHHHHH-HHHHHHHHH--c--CCCCeEEEEEEehh
Confidence            99999999 999999996  2  47789998 88864

>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2

Probab=97.14  E-value=0.00022  Score=65.04  Aligned_cols=75  Identities=19%  Similarity=0.127  Sum_probs=49.1

Q ss_pred             cchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhcc
Q psy11265        684 RDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQ  763 (945)
Q Consensus       684 ~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~  763 (945)
                      .+..|++++|++..++-.. +...+                .++.    +++...  + ++.||++++|++++|..++++
T Consensus         8 ~~did~~i~hq~~~~~~~~-~~~~l----------------gi~~----~~~~~~--~-~~~Gn~~sa~~~~~L~~~~~~   63 (90)
T PF08541_consen    8 PDDIDHFIPHQASKKILDS-IAKRL----------------GIPP----ERFPDN--L-AEYGNTGSASIPINLADALEE   63 (90)
T ss_dssp             GGGESEEEE-SSSHHHHHH-HHHHH----------------TS-G----GGBE-T--H-HHH-B-GGGHHHHHHHHHHHT
T ss_pred             HHHCCEEEeCCCCHHHHHH-HHHHc----------------CCcH----HHHHHH--H-hccCcchhhhHHHHHHHHHHc
Confidence            3455789999888555433 22211                1221    233332  2 899999999999999999997


Q ss_pred             CCccccCCCcEEEEEecCCCcc
Q psy11265        764 TPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       764 ~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      ...+  +| ++|+++++|+|..
T Consensus        64 g~~~--~G-d~vl~~~~G~G~~   82 (90)
T PF08541_consen   64 GRIK--PG-DRVLLVGFGAGFS   82 (90)
T ss_dssp             TSSC--TT-EEEEEEEEETTTE
T ss_pred             CCCC--CC-CEEEEEEEEhhhe
Confidence            6433  89 9999999999954

3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....

>PLN03173 chalcone synthase; Provisional

Probab=97.12  E-value=0.0006  Score=78.98  Aligned_cols=139  Identities=10%  Similarity=-0.004  Sum_probs=92.3

Q ss_pred             cceeeeeeecCCccccHHHHHhhcC------CCcc---cchh---ccCCccccCCC-----------------C---C--
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQ------VSAG---KYTI---GLGQAKMGFCS-----------------D---L--   54 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~g------v~~~---Kyt~---GLGq~~m~~~~-----------------~---~--   54 (945)
                      +-|.+|..-.|++.+.|+++.++-.      -++.   |+..   .=|-++..++-                 .   +  
T Consensus        17 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~   96 (391)
T PLN03173         17 ATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQD   96 (391)
T ss_pred             eEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHHH
Confidence            5599999999999999999887731      1221   2211   11333332222                 1   1  


Q ss_pred             ---ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         55 ---EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        55 ---EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                         |....||+.|++++|++.++++++|+.| ++.|.     +.++..+ ........|+.++       +..+.+++..
T Consensus        97 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~l-i~~t~-----t~~~~P~-~a~~l~~~LGl~~-------~~~~~~~~~~  162 (391)
T PLN03173         97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHL-VFCTT-----SGVDMPG-ADYQLTKLLGLRS-------SVKRFMMYQQ  162 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcc-----CCCcccH-HHHHHHHHhCCCc-------cceeeehhcC
Confidence               1234899999999999999999999988 78887     2222111 1111223344432       2345678899


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +|.|++.+ |..|..+++    .++.+++|| +++.
T Consensus       163 gC~g~~~a-L~~A~~~~~----~~~~~~vLVV~~E~  193 (391)
T PLN03173        163 GCFAGGTV-LRLAKDLAE----NNKGARVLVVCSEI  193 (391)
T ss_pred             ccHHHHHH-HHHHHHHHH----hCCCCeEEEEEEeh
Confidence            99999999 999999986    247899998 8775

>PLN02377 3-ketoacyl-CoA synthase

Probab=97.04  E-value=0.00068  Score=80.52  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             hchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        735 TKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       735 v~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      ++++...-.+.||+-++|++..|.-++++...+  +| +||.+++||+|-..
T Consensus       422 ~e~sr~tL~r~GNTSSaSI~~aL~~~~~~grik--~G-d~VlliaFGsGf~~  470 (502)
T PLN02377        422 VEASRMTLHRFGNTSSSSIWYELAYIEAKGRMR--KG-NRVWQIAFGSGFKC  470 (502)
T ss_pred             chHHHHHHHhcCCchhhHHHHHHHHHHHcCCCC--CC-CeEEEEEEccccEe
Confidence            445544557999999999999999998765323  89 99999999999543

>PLN02932 3-ketoacyl-CoA synthase

Probab=96.90  E-value=0.0013  Score=77.78  Aligned_cols=50  Identities=18%  Similarity=0.117  Sum_probs=40.6

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      .++++|...=.+-|||-++|++..|.-+......+  +| +||.+++||+|-.
T Consensus       396 ~~~e~s~~tL~rfGNTSSaSI~~~L~~~ea~grik--~G-d~vl~iaFGsGf~  445 (478)
T PLN02932        396 LDVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMK--KG-DRIWQIALGSGFK  445 (478)
T ss_pred             HHHHHHHHHHHHhCChhhhHHHHHHHHHHHcCCCC--CC-CEEEEEEEeccHH
Confidence            45667766668999999999999999988654322  89 9999999999854

>PLN02932 3-ketoacyl-CoA synthase

Probab=96.66  E-value=0.0023  Score=75.64  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=100.2

Q ss_pred             CCCcccceeeeeeecCCc--cccHHHHHhhcCCC--cccc----------------hhccCCccccCCCC----------
Q psy11265          4 QWPENVGILGIEFYFPSQ--YVDQTELEKHDQVS--AGKY----------------TIGLGQAKMGFCSD----------   53 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~--yvd~~~L~~~~gv~--~~Ky----------------t~GLGq~~m~~~~~----------   53 (945)
                      ++|..|-..+-+-|-|+-  .|+.+.+.++-...  .|+|                .-|||++. .++..          
T Consensus        63 ~~~~~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t-~~p~~~~~~~~~~~~  141 (478)
T PLN02932         63 TRPKPVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQET-YIPEGLQCLPLQQNL  141 (478)
T ss_pred             cCCCcEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCce-eeccccccCCHHHHH
Confidence            457778888888888754  45555444432111  1333                23999987 44443          


Q ss_pred             ---CccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh
Q psy11265         54 ---LEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY  130 (945)
Q Consensus        54 ---~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k  130 (945)
                         +|-...|+..|++++|++.+++|++|+.| +|+|-     + .+.+....+.....|+.+.++        .++++.
T Consensus       142 ~~~~~ea~~la~~Aa~~aL~~agi~p~dId~l-Iv~ts-----t-~~~~Pslaa~V~~~lGlr~~i--------~~fdL~  206 (478)
T PLN02932        142 AVSRKETEEVIIGAVDNLFRNTGISPSDIGIL-VVNSS-----T-FNPTPSLSSILVNKFKLRDNI--------KSLNLG  206 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcc-----C-CCCCCcHHHHHHHHhCCCCCc--------eEEEec
Confidence               23478999999999999999999999988 88887     1 123444444444667766666        678888


Q ss_pred             -hhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        131 -STALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       131 -~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                       -+|.|+..+ |..|..+++.    ++.+++|| +++.
T Consensus       207 gmGCSggl~a-L~lA~~ll~~----~~~~~aLVVstE~  239 (478)
T PLN02932        207 GMGCSAGVIA-IDAAKSLLQV----HRNTYALVVSTEN  239 (478)
T ss_pred             cchhhhHHHH-HHHHHHHHHc----CCCCeEEEEEEee
Confidence             799999999 8888999962    36899998 8775

>PLN03168 chalcone synthase; Provisional

Probab=96.30  E-value=0.0036  Score=72.62  Aligned_cols=55  Identities=11%  Similarity=-0.012  Sum_probs=39.0

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccC--Ccc---ccCCCcEEEEEecCCCccccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT--PWE---RLQGMSRIGLFSYGSDNIKAL  788 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~--~~~---~L~G~~rI~l~s~GsG~~~~~  788 (945)
                      .|+..|-..-++.|||-++|+.+.|--+++..  ++.   .-.| +++++++||.|...+.
T Consensus       321 ek~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~g~~~~~~g~-~~~ll~afGpG~t~~~  380 (389)
T PLN03168        321 DKMQGSRDILSEFGNMSSASVLFVLDQIRQRSVKMGASTLGEGS-EFGFFIGFGPGLTLEV  380 (389)
T ss_pred             HHHHHHHHHHHHhCccHhhhHHHHHHHHHHHHhhcCCCCCCCCc-cEEEEEEEcchhhhhh
Confidence            45555544448999999999999999988541  110   0135 7999999999976543

>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2

Probab=95.98  E-value=0.004  Score=66.85  Aligned_cols=143  Identities=16%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhh--c--CCCc-----ccchh---ccCCccccCCCC-------------------
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKH--D--QVSA-----GKYTI---GLGQAKMGFCSD-------------------   53 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~--~--gv~~-----~Kyt~---GLGq~~m~~~~~-------------------   53 (945)
                      -+...-|.+|.-.+|++.++|+|+.++  +  +.+-     .|+..   .=|-++.-++-+                   
T Consensus        11 ~~g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~   90 (226)
T PF00195_consen   11 SPGPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLA   90 (226)
T ss_dssp             -SSSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HH
T ss_pred             CCCCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHH
Confidence            345678999999999999999988764  2  2221     22211   113332222221                   


Q ss_pred             ------CccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhh
Q psy11265         54 ------LEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGAL  127 (945)
Q Consensus        54 ------~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~  127 (945)
                            .|...-|+..|+++-|++.|+++++|..| ++-|-     +.+-.-++|. ..+..|+++.+.       .|..
T Consensus        91 ~R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthl-v~vs~-----TG~~~PglD~-~l~~~LgL~~~v-------~R~~  156 (226)
T PF00195_consen   91 ERNALYAEEAPPLAEEAARKALAEAGLDPSDITHL-VTVSC-----TGIAAPGLDA-RLINRLGLRPDV-------QRTP  156 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEE-EEEES-----SSSECS-HHH-HHHHHHT--TTS-------EEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceE-EEEec-----CCcCCCchhH-HHHhcCCCCCCc-------EEEE
Confidence                  26678899999999999999999999999 44443     4555555554 334555554333       4554


Q ss_pred             hhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        128 DKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       128 e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      =...+|+||..+ |..|.++.+    .+|+.++|| |...
T Consensus       157 i~~~GC~gg~~~-L~~A~~~~~----~~p~a~VLvv~vEl  191 (226)
T PF00195_consen  157 IFGMGCAGGAAG-LRRAKDIAR----ANPGARVLVVCVEL  191 (226)
T ss_dssp             EES-GGGHHHHH-HHHHHHHHH----HSTT-EEEEEEEEE
T ss_pred             EeccchhhHHHH-HHHHHHHHh----CCccceEEEEEEEe
Confidence            455689999999 899999875    358999998 6554

3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.83  E-value=0.0049  Score=75.33  Aligned_cols=64  Identities=27%  Similarity=0.345  Sum_probs=56.4

Q ss_pred             ccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHH
Q psy11265        399 LLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       399 ~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      ..|++.++...+++-+++.     ++.|.|+++|+.+.+..+|+.||.+|+.|+|..|+..|++|+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~  157 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-----SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK  157 (615)
T ss_pred             CCCCCCCCCccccccccch-----hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3678888888887776654     678999999999999999999999999999999999999998753

>PLN02377 3-ketoacyl-CoA synthase

Probab=95.78  E-value=0.0046  Score=73.57  Aligned_cols=95  Identities=14%  Similarity=0.108  Sum_probs=72.6

Q ss_pred             CCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh-
Q psy11265         52 SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY-  130 (945)
Q Consensus        52 ~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k-  130 (945)
                      ..+|....++..|+.++|++.+++|++|+.| +| |-     |....+....+.....|+.++++        +++++- 
T Consensus       167 ~~~~ea~~l~~~A~~~aL~kaGi~p~dID~L-Vv-~c-----S~~~~~PSlaa~V~~~LGlr~~v--------~afdL~g  231 (502)
T PLN02377        167 AAREEAEQVMFGALDNLFANTNVNPKDIGIL-VV-NC-----SLFNPTPSLSAMIVNKYKLRGNI--------RSFNLGG  231 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EE-EC-----CCCCCCCcHHHHHHHHhCCCCCC--------eEEeccc
Confidence            4578899999999999999999999999988 66 33     12222333333444667777677        778998 


Q ss_pred             hhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        131 STALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       131 ~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .+|.|+..+ |..|..+++.    ++++++|| ++++
T Consensus       232 mGCsggl~a-L~lA~~ll~~----~~~~~aLVVstE~  263 (502)
T PLN02377        232 MGCSAGVIA-VDLAKDMLQV----HRNTYAVVVSTEN  263 (502)
T ss_pred             chhhHHHHH-HHHHHHHHHc----CCCCEEEEEEEec
Confidence            599999999 8888899962    37899998 8876

>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction

Probab=95.76  E-value=0.0053  Score=65.86  Aligned_cols=97  Identities=10%  Similarity=0.003  Sum_probs=68.3

Q ss_pred             hccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccccc
Q psy11265         41 IGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKA  120 (945)
Q Consensus        41 ~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~  120 (945)
                      +|||+.          ..+|+..|++++|++.++++++|+.| .|+|.. .+.   +. ..........++.. +.    
T Consensus         1 ~~~~~~----------~~~l~~~A~~~al~~ag~~~~~i~~l-i~~~~~-~~~---~~-~~~a~~i~~~lg~~-~~----   59 (254)
T cd00327           1 TGLGIT----------ASELGFEAAEQAIADAGLSKGPIVGV-IVGTTG-GSG---EF-SGAAGQLAYHLGIS-GG----   59 (254)
T ss_pred             CcchHH----------HHHHHHHHHHHHHHHcCCCCCCceEE-EEEECC-CCc---cc-cHHHHHHHHHhCCC-CC----
Confidence            478887          78999999999999999999999998 888771 000   00 00111122333332 22    


Q ss_pred             CcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        121 GNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       121 ~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                          ..+.+..+|.++..| |..|..+|+  +  +..+.+|| ++|..
T Consensus        60 ----~~~~i~~~C~s~~~a-l~~A~~~i~--~--g~~~~~lv~~~e~~   98 (254)
T cd00327          60 ----PAYSVNQACATGLTA-LALAVQQVQ--N--GKADIVLAGGSEEF   98 (254)
T ss_pred             ----CcceeccHhHHHHHH-HHHHHHHHH--C--CCCCEEEEEeccee
Confidence                346788999999999 899999996  3  34688998 88873

Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.

>KOG0549|consensus

Probab=95.72  E-value=0.0076  Score=61.90  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=34.7

Q ss_pred             EEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCc
Q psy11265        323 LVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPF  361 (945)
Q Consensus       323 f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~  361 (945)
                      |++|.++||+|+|+++.+|+.||++++++||++  +||.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l--~fg~   37 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHL--GFGE   37 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcc--cccc
Confidence            578999999999999999999999999999999  7884

>KOG4648|consensus

Probab=95.28  E-value=0.0083  Score=66.81  Aligned_cols=36  Identities=39%  Similarity=0.622  Sum_probs=32.1

Q ss_pred             HHHhhhccchhhHhcccccccccHHHHHHHHHHHHH
Q psy11265        430 EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALG  465 (945)
Q Consensus       430 ~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~  465 (945)
                      .++.+.....+||+||.|||+|+|.+|+.+|.+++.
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia  125 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA  125 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc
Confidence            355677788899999999999999999999999876

>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction

Probab=95.19  E-value=0.0097  Score=63.81  Aligned_cols=83  Identities=12%  Similarity=0.051  Sum_probs=55.3

Q ss_pred             CCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhh--chhhhhccccCcccchhHHHHHHH
Q psy11265        682 FNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLT--KPGLYLANLIGNMYTPSLYGCLVS  759 (945)
Q Consensus       682 ~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv--~psl~~~~~vGN~YTaSlyl~L~S  759 (945)
                      ...+..|+|..|.+++.+.......+.                 ..    ..+.  -+......++||++++|.++.|+.
T Consensus       160 ~~~~did~~~~h~~~~~~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~~G~~~~as~~~~l~~  218 (254)
T cd00327         160 LTPSDIDYVEAHGTGTPIGDAVELALG-----------------LD----PDGVRSPAVSATLIMTGHPLGAAGLAILDE  218 (254)
T ss_pred             CCHHHCCEEEccCCcCccccHHHHHHH-----------------HH----HhCCCCCceeccccccccchHHHHHHHHHH
Confidence            334556789999999887655444331                 00    0111  134445589999999999999999


Q ss_pred             HhccCCcc-----ccCCCcEEEEEecCCCccc
Q psy11265        760 LLIQTPWE-----RLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       760 lL~~~~~~-----~L~G~~rI~l~s~GsG~~~  786 (945)
                      ++..-...     .-+| ++++++++|.|-..
T Consensus       219 ~~~~~~~~~~~~~~~~~-~~~l~~~~g~Gg~~  249 (254)
T cd00327         219 LLLMLEHEFIPPTPREP-RTVLLLGFGLGGTN  249 (254)
T ss_pred             HHHHHhCCCcCCCCCCc-CEEEEeeEcCCCcc
Confidence            88653211     1157 99999999998643

Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.

>PLN03170 chalcone synthase; Provisional

Probab=95.07  E-value=0.03  Score=65.33  Aligned_cols=59  Identities=14%  Similarity=0.078  Sum_probs=40.8

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccC--CccccCC--CcEEEEEecCCCcccccccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT--PWERLQG--MSRIGLFSYGSDNIKALFRR  791 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~--~~~~L~G--~~rI~l~s~GsG~~~~~~~~  791 (945)
                      .++..|-..-++.|||-++|+++.|--+++..  ...--+|  -++++|++||-|...+..-.
T Consensus       326 ~~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~~g~~~~G~~~~~~ll~afGpG~t~~~~ll  388 (401)
T PLN03170        326 ERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVL  388 (401)
T ss_pred             HHHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhhcCCCCCCCCccEEEEEEeCchHhHHhHHh
Confidence            45555555568999999999999999998421  1110134  14799999999977655444

>KOG4234|consensus

Probab=95.05  E-value=0.016  Score=60.71  Aligned_cols=36  Identities=33%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             hhccchhhHhcccccccccHHHHHHHHHHHHHHHHh
Q psy11265        434 LASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ  469 (945)
Q Consensus       434 l~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~  469 (945)
                      ++.+..+|.+||.+|+.|+|.+|..+|.+||...-.
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~  127 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS  127 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc
Confidence            778999999999999999999999999999987643

>KOG0547|consensus

Probab=94.80  E-value=0.018  Score=66.91  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=39.2

Q ss_pred             hccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHH
Q psy11265        426 WQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       426 w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      -.|+.+|+++.|..+|.+||.+|++|+|.+||+.|..|+.+-
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~  145 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC  145 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999999999854

>PLN02192 3-ketoacyl-CoA synthase

Probab=94.60  E-value=0.017  Score=68.80  Aligned_cols=142  Identities=15%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             CCCcccceeeeeeecCCc--cccHHHHHhhcCCCcccc-------------hhccCCcc------------ccCCCCCcc
Q psy11265          4 QWPENVGILGIEFYFPSQ--YVDQTELEKHDQVSAGKY-------------TIGLGQAK------------MGFCSDLED   56 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~--yvd~~~L~~~~gv~~~Ky-------------t~GLGq~~------------m~~~~~~ED   56 (945)
                      ++|..|-..+-+-|-|+-  -|+.+.+.++-... |+|             .=|||++.            .++...+|-
T Consensus        97 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~sglg~~t~~p~~~~~~~~~~~~~~~~~E  175 (511)
T PLN02192         97 TRPRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLT-GSFTEENLEFQRKILERSGLGESTYLPEAVLNVPPNPCMAEARKE  175 (511)
T ss_pred             cCCCcEEEEeeeeecCCccccccHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCCCcccCChhhccCCCCccHHHHHHH
Confidence            356778888888887764  34444443332111 332             23777753            122233455


Q ss_pred             HHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh-hhhhh
Q psy11265         57 INSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY-STALG  135 (945)
Q Consensus        57 ivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k-~acyg  135 (945)
                      ...+...|++++|++.+++|++|+.| +|++-      ....+....+..+..++..++.        .++++- -+|.|
T Consensus       176 a~~~~~~Aa~~aL~kaGi~p~DIDiL-Iv~~S------~~~~~PSlaa~I~n~lGlr~~i--------~afdLsgmGCSg  240 (511)
T PLN02192        176 AETVMFGAIDQLLAKTSVKPKDIGIL-IVNCS------LFNPTPSLSAMVINHYKLRGNI--------LSYNLGGMGCSA  240 (511)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHCCEE-EEECC------CCCCCchHHHHHHHHhCCCCCc--------eEEEcccchhhh
Confidence            56677789999999999999999988 66644      1222333333344566666566        778988 59999


Q ss_pred             HHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        136 YLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       136 ~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +..| |..|.++++.    ++++++|| ++++
T Consensus       241 gl~a-LdlA~~lL~a----~~~~~aLVVstE~  267 (511)
T PLN02192        241 GLIS-IDLAKHLLQV----HPNSYALVISMEN  267 (511)
T ss_pred             HHHH-HHHHHHHHHc----CCCCeEEEEEEEe
Confidence            9999 9989999962    37789998 7653

>PLN00415 3-ketoacyl-CoA synthase

Probab=94.34  E-value=0.054  Score=63.88  Aligned_cols=140  Identities=11%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             CCcccceeeeeeecCC--ccccHHHHHhhcCCCcccchh-------------ccCCc---------cccCCC--CCccHH
Q psy11265          5 WPENVGILGIEFYFPS--QYVDQTELEKHDQVSAGKYTI-------------GLGQA---------KMGFCS--DLEDIN   58 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~--~yvd~~~L~~~~gv~~~Kyt~-------------GLGq~---------~m~~~~--~~EDiv   58 (945)
                      +|..|-..+-+-|-|+  ..|+.+.+.++-.. -|+|+.             |||++         .--.++  +.....
T Consensus        56 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~  134 (466)
T PLN00415         56 RSKPVYLVDFSCHQPTDSCKISSETFFNMAKG-AQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHES  134 (466)
T ss_pred             CCCcEEEEeeeeecCCccccccHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHH
Confidence            4666777777777654  34444443333111 133331             66653         212222  344556


Q ss_pred             HHHHH-HHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhh-hhhhH
Q psy11265         59 SICLT-VVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS-TALGY  136 (945)
Q Consensus        59 sla~~-a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~-acyg~  136 (945)
                      .|++- |++++|++.+++|++|+.| ++++.      ........-......++.+.++        ..+++.. +|.|+
T Consensus       135 em~i~~A~~~aL~~aGi~p~dID~L-Ivs~T------~~~~~Pslaa~l~~~LGLr~~v--------~~~dL~gmGCsgg  199 (466)
T PLN00415        135 ELVIFGALNSLFKKTGIEPREVGIF-IVNCS------LFNPNPSLSSMIVNRYKLKTDV--------KTYNLSGMGCSAG  199 (466)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHCCEE-EEECc------CCCCCchHHHHHHHHhCCCCCc--------eEEEeccccchHH
Confidence            66666 6789999999999999988 45433      1111222222333556666566        6789997 99999


Q ss_pred             HHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        137 LEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       137 t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      ..+ |..|.++++    .+|+.++|| +++
T Consensus       200 v~a-L~lA~~ll~----a~~~~~aLVVs~E  224 (466)
T PLN00415        200 AIS-VDLATNLLK----ANPNTYAVIVSTE  224 (466)
T ss_pred             HHH-HHHHHHHHH----hCCCCEEEEEEEe
Confidence            999 999999996    247889998 765

>PLN03172 chalcone synthase family protein; Provisional

Probab=94.30  E-value=0.058  Score=62.76  Aligned_cols=59  Identities=14%  Similarity=0.059  Sum_probs=40.9

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccC-Ccccc-CC--CcEEEEEecCCCcccccccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT-PWERL-QG--MSRIGLFSYGSDNIKALFRR  791 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~-~~~~L-~G--~~rI~l~s~GsG~~~~~~~~  791 (945)
                      .++..|-..=++.|||-++|+++.|--+++.. ....+ +|  .+++++++||-|...+..-.
T Consensus       322 ~~~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~g~~~~G~~~~~~ll~afGpG~t~~~~ll  384 (393)
T PLN03172        322 EKLRATRHVLSDYGNMSSACVLFILDEMRKKSIEEGKGSTGEGLEWGVLFGFGPGLTVETVVL  384 (393)
T ss_pred             HHHHHHHHHHHHhCccHHhHHHHHHHHHHhhhhhcCCCCCCCCcceEEEEEeCCcceeeeeee
Confidence            45666655558999999999999999987531 00111 22  15789999999987765544

>PLN03173 chalcone synthase; Provisional

Probab=93.81  E-value=0.054  Score=63.00  Aligned_cols=83  Identities=10%  Similarity=-0.013  Sum_probs=54.6

Q ss_pred             chHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccC
Q psy11265        685 DIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT  764 (945)
Q Consensus       685 ~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~  764 (945)
                      ...++|+.|++-.++ ++++...|                .++    ..|+.+|...=++.|||-++|+++.|.-+++..
T Consensus       295 ~di~~~v~Hqgg~~I-l~~v~~~L----------------gL~----~ekl~~s~~vl~~yGNtSSaSv~~vL~~~~~~~  353 (391)
T PLN03173        295 WNSLFWIAHPGGPAI-LDQVEAKL----------------ALK----PEKLRATRHVLSEYGNMSSACVLFILDEMRKKS  353 (391)
T ss_pred             cccCeEEECCCcHHH-HHHHHHHc----------------CCC----hHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhh
Confidence            445679999776444 33333322                222    245666655569999999999999999999631


Q ss_pred             --Cc--cc-cCCCcEEEEEecCCCcccccc
Q psy11265        765 --PW--ER-LQGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       765 --~~--~~-L~G~~rI~l~s~GsG~~~~~~  789 (945)
                        ..  .. -.+ +++++++||-|-..+..
T Consensus       354 ~~~~~~~~g~~~-~~~l~~afGpG~t~e~~  382 (391)
T PLN03173        354 AEDGLKSTGEGL-EWGVLFGFGPGLTVETV  382 (391)
T ss_pred             hhcCCCCCCCCc-ceEEEEEeCchHHHHHH
Confidence              10  00 124 67999999999776544

>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction

Probab=92.98  E-value=0.053  Score=60.60  Aligned_cols=84  Identities=10%  Similarity=0.036  Sum_probs=51.2

Q ss_pred             CCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHh
Q psy11265        682 FNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLL  761 (945)
Q Consensus       682 ~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL  761 (945)
                      ...+.-||++.|.+...+....-..++                   ...+..+-.+......++||++++|.++.|...+
T Consensus       220 l~~~did~~~~h~~~~~~~~~~e~~~~-------------------~~~~~~~~~~~~~~~~~~G~~~aas~~~~l~~~~  280 (332)
T cd00825         220 LTVWDIDYLVAHGTGTPIGDVKELKLL-------------------RSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAV  280 (332)
T ss_pred             CCHhHCCEEEccCCCCCCCCHHHHHHH-------------------HHHhCCCCceeECCCcccccchhHhHHHHHHHHH
Confidence            333455789999888665433322221                   0011110112333558999999999999999987


Q ss_pred             ccCCccc-----------------------cCCCcEEEEEecCCCcc
Q psy11265        762 IQTPWER-----------------------LQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       762 ~~~~~~~-----------------------L~G~~rI~l~s~GsG~~  785 (945)
                      ..-....                       -+| ++++++++|.|-.
T Consensus       281 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~G~Gg~  326 (332)
T cd00825         281 LMLEHGFIPPSIHIEELDEAGLNIVTETTPREL-RTALLNGFGLGGT  326 (332)
T ss_pred             HHHhcCccCCCCCCCCCCcccCcccCCCCCCCC-CEEEEeeecCCCe
Confidence            5321111                       157 9999999999854

Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).

>KOG0553|consensus

Probab=92.16  E-value=0.077  Score=58.72  Aligned_cols=40  Identities=40%  Similarity=0.493  Sum_probs=35.3

Q ss_pred             cCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHH
Q psy11265        428 LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       428 ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      .+++|-.+.|+.+|.+||.+.+.++|++|+.+|.+|+.+.
T Consensus        72 ~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~  111 (304)
T KOG0553|consen   72 LTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD  111 (304)
T ss_pred             cChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            3444777889999999999999999999999999999854

>PLN02192 3-ketoacyl-CoA synthase

Probab=91.94  E-value=0.1  Score=62.31  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=39.0

Q ss_pred             hchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        735 TKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       735 v~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      ++++...=.+.||+-++|+++.|.-++.....+  +| +||.+++||+|-..
T Consensus       426 ~e~sr~tL~rfGNTSSaSI~~aL~~~eakgrik--~G-DrVl~iaFGsGf~~  474 (511)
T PLN02192        426 MEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIK--KG-DRTWQIAFGSGFKC  474 (511)
T ss_pred             hhHHHHHHhHcCChHHhHHHHHHHHHHHcCCCC--CC-CEEEEEEEcchHhh
Confidence            445544458999999999999999998765322  89 99999999999543

>PRK08313 acetyl-CoA acetyltransferase; Provisional

Probab=91.65  E-value=0.16  Score=58.86  Aligned_cols=108  Identities=9%  Similarity=0.016  Sum_probs=73.2

Q ss_pred             chhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccc
Q psy11265         39 YTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLY  118 (945)
Q Consensus        39 yt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~ly  118 (945)
                      |-+|.||..+..-...++...|++.|++..|++-++++++|+.| .++|.    .+.|.+...........|+.. +.  
T Consensus         6 ~IvG~g~t~~~~~~~~~s~~eL~~eAa~~Al~dAgl~~~dID~i-v~~~~----~~~~~~~~~~~~~va~~LGl~-~~--   77 (386)
T PRK08313          6 AVLGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTWDDIDAV-VVGKA----PDFFEGVMMPELFLADALGAT-GK--   77 (386)
T ss_pred             EEEEeecCCcCccCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEecc----ccccccccCchHHHHHhcCCC-CC--
Confidence            56799999863333567899999999999999999999999988 66652    122322111112222344442 12  


Q ss_pred             ccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        119 KAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       119 k~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                            .++++..+|-++..+ ++.|...|+  ++  .-..+|| +++
T Consensus        78 ------~~~~v~~~casg~~a-l~~A~~~I~--sG--~~~~vLVvg~e  114 (386)
T PRK08313         78 ------PLIRVHTAGSVGGST-AVVAASLVQ--SG--VYRRVLAVAWE  114 (386)
T ss_pred             ------ceEEEeccCHHHHHH-HHHHHHHHH--CC--CCCEEEEEEEE
Confidence                  245777789988888 888888886  33  4577887 765

>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction

Probab=91.05  E-value=0.14  Score=57.21  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=64.2

Q ss_pred             hccCCccccCCCCCccHHHHHHHHHHHHHHhccCC----HHhhcccccccCCccccccccccc-----------------
Q psy11265         41 IGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELD----YAQIGQLLQVESPEEYEQESWQLT-----------------   99 (945)
Q Consensus        41 ~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~----~~~Ig~l~~v~Te~~~~~s~wd~s-----------------   99 (945)
                      +|+|+.          ...|++.|+++.|++-+++    +++|+.| .++|..-.  ..|...                 
T Consensus         5 ~g~g~~----------~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~i-i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   71 (332)
T cd00825           5 TGLGSY----------VSILGFEAAERAIADAGLSREYQKNPIVGV-VVGTGGGS--PRFQVFGADAMRAVGPYVVTKAM   71 (332)
T ss_pred             EcccHH----------HHHHHHHHHHHHHHHcCCCccccCCCCEEE-EEEeCCcc--HHHHhhhhccccccCcchhhccc
Confidence            367776          7889999999999999999    8899888 67765100  000000                 


Q ss_pred             -chhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        100 -EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       100 -~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                       ..........+...|.+          +.+..+|.+++.| |..|..+|+  +  +.-..+|| ++|.
T Consensus        72 ~~~~a~~ia~~lgl~g~~----------~~v~~~cas~~~a-l~~A~~~i~--~--g~~~~~Lv~~~d~  125 (332)
T cd00825          72 FPGASGQIATPLGIHGPA----------YDVSAACAGSLHA-LSLAADAVQ--N--GKQDIVLAGGSEE  125 (332)
T ss_pred             chHHHHHHHHHhCCCCCc----------cccccHhHHHHHH-HHHHHHHHH--c--CCCCEEEEecccc
Confidence             00001111233333333          5667899999999 889999996  3  34578888 8774

Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).

>PRK12578 acetyl-CoA acetyltransferase; Provisional

Probab=90.99  E-value=0.2  Score=57.98  Aligned_cols=107  Identities=12%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             chhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccc
Q psy11265         39 YTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLY  118 (945)
Q Consensus        39 yt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~ly  118 (945)
                      |-+|.|+...+-. ..+....|++.|++.+|++.+|++++|+.+ .+++....   ..  ...........++..+..  
T Consensus         4 ~IvG~g~t~~~~~-~~~~~~eLa~~A~~~AL~dAgi~~~dID~v-i~g~~~~~---~~--~~~~a~~v~~~lGl~~~~--   74 (385)
T PRK12578          4 AVIGVGNSKFGRR-DDVSVQELAWESIKEALNDAGVSQTDIELV-VVGSTAYR---GI--ELYPAPIVAEYSGLTGKV--   74 (385)
T ss_pred             EEEeecccceeec-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecccc---cc--cCChHHHHHHHhCCCCCC--
Confidence            4578898885553 457789999999999999999999999988 67765110   00  000111112233332211  


Q ss_pred             ccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        119 KAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       119 k~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                             .+++-.+|-++..| |..|...|+  ++  ....+|| ++|.
T Consensus        75 -------~~~v~~~casg~~a-l~~A~~~I~--sG--~~~~vLvvg~e~  111 (385)
T PRK12578         75 -------PLRVEAMCATGLAA-SLTAYTAVA--SG--LVDMAIAVGVDK  111 (385)
T ss_pred             -------eeEEeccCHHHHHH-HHHHHHHHH--CC--CCCEEEEEEEee
Confidence                   24666799999999 888888886  33  3467887 7765

>PLN02854 3-ketoacyl-CoA synthase

Probab=90.80  E-value=0.13  Score=61.75  Aligned_cols=50  Identities=20%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             hchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        735 TKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       735 v~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .+++...=.+.||+-++|+++.|.-++.....+  +| +||.+++||+|-.-.
T Consensus       438 ~e~sr~tL~rfGNTSSASI~~~L~~~~~kGrik--~G-D~Vl~iaFGsGft~~  487 (521)
T PLN02854        438 MEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVS--AG-DRVWQIAFGSGFKCN  487 (521)
T ss_pred             ccchHHHhhhcCChHhhHHHHHHHHHHHcCCCC--CC-CEEEEEEEchhhhhh
Confidence            445544447889999999999999998764322  89 999999999996543

>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine

Probab=90.42  E-value=0.34  Score=56.19  Aligned_cols=106  Identities=9%  Similarity=0.005  Sum_probs=69.3

Q ss_pred             hccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccc
Q psy11265         41 IGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTL  117 (945)
Q Consensus        41 ~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~l  117 (945)
                      +|.|+...+--.   ..++...|++.|++++|++.++++++|+.| .+++..    ..++.... .......++..++. 
T Consensus         3 vg~~~Tpf~r~~~~~~~~~~~~La~~A~~~AL~dAgl~~~dID~v-i~~~~~----~~~~~~~~-a~~v~~~lGl~~~~-   75 (386)
T cd00751           3 VSAVRTPIGRFGGALKDVSADDLGAAVIKALLERAGLDPEEVDDV-IMGNVL----QAGEGQNP-ARQAALLAGLPESV-   75 (386)
T ss_pred             EEeecCCccCCCCCCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEE-EEEecc----CCCCCChH-HHHHHHHcCCCCCC-
Confidence            566666654322   247899999999999999999999999988 676541    11221111 11111233433212 


Q ss_pred             cccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        118 YKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       118 yk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                             -.+++-.+|-++..+ |..|..+|+  ++  .-..+|| +++
T Consensus        76 -------~~~~v~~~c~s~~~a-l~~A~~~I~--sG--~~~~vLv~g~e  112 (386)
T cd00751          76 -------PATTVNRVCGSGLQA-VALAAQSIA--AG--EADVVVAGGVE  112 (386)
T ss_pred             -------chhhhccccHHHHHH-HHHHHHHHH--CC--CCCeEEEeeee
Confidence                   246778899999999 888999996  33  3467787 655

They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.

>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases

Probab=89.32  E-value=0.43  Score=55.42  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=68.5

Q ss_pred             hccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccc
Q psy11265         41 IGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTL  117 (945)
Q Consensus        41 ~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~l  117 (945)
                      +|.|++.++--+   ..++...|++.|++++|++.++++++|+.+ .+++...    ..+. ..........++...++ 
T Consensus         2 vG~~~tp~~~~~g~~~~~t~~~La~~A~~~Al~dAgl~~~dID~v-v~g~~~~----~~~~-~~~a~~va~~lGl~~~~-   74 (386)
T TIGR01930         2 VAAARTPIGKFGGSLKDVSAEDLGAAVIKELLERNPLDPELIDDV-IFGNVLQ----AGEQ-QNIARQAALLAGLPESV-   74 (386)
T ss_pred             cceecCCccCCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeccC----CCCC-ChHHHHHHHHcCCCCCc-
Confidence            466777654321   248899999999999999999999999988 6765410    0100 00011111233433222 


Q ss_pred             cccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        118 YKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       118 yk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                             -.+++-.+|-++..+ +..|...|+  ++  .-..+|| +++.
T Consensus        75 -------~~~~v~~~Casg~~a-l~~A~~~I~--sG--~~~~vLv~g~e~  112 (386)
T TIGR01930        75 -------PAYTVNRQCASGLQA-VILAAQLIR--AG--EADVVVAGGVES  112 (386)
T ss_pred             -------eeeeecchhhHHHHH-HHHHHHHHH--CC--CCCEEEEEEehh
Confidence                   235666899999999 888899996  43  3467787 6563

This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt

>PLN02854 3-ketoacyl-CoA synthase

Probab=88.97  E-value=0.29  Score=58.75  Aligned_cols=141  Identities=11%  Similarity=0.115  Sum_probs=90.9

Q ss_pred             CCCcccceeeeeeecCCc--cccHHHHHhhcCCCcccch-------------hccCCccccCCC-------------CCc
Q psy11265          4 QWPENVGILGIEFYFPSQ--YVDQTELEKHDQVSAGKYT-------------IGLGQAKMGFCS-------------DLE   55 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~--yvd~~~L~~~~gv~~~Kyt-------------~GLGq~~m~~~~-------------~~E   55 (945)
                      ++|..|-..+-+-|-|+-  -|+.+.+-++-... |+|+             -|||++. .+++             .+|
T Consensus       109 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~sg~g~~t-y~P~~~~~~~~~~~~~~~r~  186 (521)
T PLN02854        109 KRSKPVYLVDFACYKPEDERKISVDSFLTMTEEN-GSFEDETVQFQRRISTRSGLGDET-YLPRGITSRPPNLCMEEARA  186 (521)
T ss_pred             cCCCcEEEEeeeeecCCccccccHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCCCcc-ccCccccCCCCcchHHHHHH
Confidence            457778888888888764  34444433331110 3332             4788765 3322             122


Q ss_pred             cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh-hhhh
Q psy11265         56 DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY-STAL  134 (945)
Q Consensus        56 Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k-~acy  134 (945)
                      -.-..--.|+..||++.+++|++|+.| +|++-      ....+....+.....|+..++.        .++++- -+|.
T Consensus       187 ea~~v~~~~~~~lL~kaGi~p~dID~L-Iv~cS------~~~p~PSlAa~I~n~LGlr~~i--------~afdLsgmGCS  251 (521)
T PLN02854        187 EAEAVMFGALDSLFSKTGVKPRDIGIL-IVNCS------LFNPTPSLSAMIVNHYKLRTDI--------KSYNLGGMGCS  251 (521)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHCCEE-EEECC------CCCCCCCHHHHHHHHhCCCCCc--------eEEecccchhh
Confidence            233334467889999999999999998 66432      1222333333444566766666        678888 6999


Q ss_pred             hHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        135 GYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       135 g~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      |+..+ |..|.++++.    ++.+++|| ++++
T Consensus       252 ggl~a-L~lA~~lL~~----~~~~~aLVVstE~  279 (521)
T PLN02854        252 AGLIS-IDLANDLLKA----NPNSYAVVVSTEN  279 (521)
T ss_pred             hHHHH-HHHHHHHHHh----CCCCeEEEEEEee
Confidence            99999 8888899962    37899998 8876

>PLN00415 3-ketoacyl-CoA synthase

Probab=88.86  E-value=0.33  Score=57.47  Aligned_cols=52  Identities=19%  Similarity=0.179  Sum_probs=42.6

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .+++||-..=++-|||=++|+|.-|.-++.....+  +| +|+.+++||+|-..+
T Consensus       382 ~~le~Sr~vL~r~GN~SSsSV~yvL~~~~~~~~~~--~G-drvl~iaFGpGf~~e  433 (466)
T PLN00415        382 FDLEPSRMTLHRFGNTSSSSLWYELAYVEAKCRVK--RG-DRVWQLAFGSGFKCN  433 (466)
T ss_pred             HHHHHHHHHHHHhCCchhhhHHHHHHHHHhhccCC--CC-CEEEEEEEcCcchhh
Confidence            55777777779999999999999999998654322  89 999999999995444

>PRK08235 acetyl-CoA acetyltransferase; Provisional

Probab=88.22  E-value=0.64  Score=54.17  Aligned_cols=108  Identities=6%  Similarity=-0.045  Sum_probs=71.4

Q ss_pred             chhccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|-|++.++=-.   ..+++..|+..|++++|++.+++|++|+.+ .+++..-    ..++..+-. .....++.+.+
T Consensus         5 ~Ivg~~rTpfg~~~g~~~~~~~~eLa~~A~~~aL~~agl~~~dID~v-i~g~~~~----~~~~~~~~~-~~~~~~Gl~~~   78 (393)
T PRK08235          5 VIVSAARTPFGKFGGSLKDVKATELGGIAIKEALERANVSAEDVEEV-IMGTVLQ----GGQGQIPSR-QAARAAGIPWE   78 (393)
T ss_pred             EEEecCcCCccCCCCcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeccc----CCCCCCHHH-HHHHHcCCCCC
Confidence            55677777754211   357899999999999999999999999988 7876610    112211111 01122232222


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      .        -.+.+..+|-+|..| +..|...|+  ++  ....+|| +++
T Consensus        79 ~--------p~~~V~~~CaSg~~A-l~~A~~~I~--sG--~~d~vLvvG~E  116 (393)
T PRK08235         79 V--------QTETVNKVCASGLRA-VTLADQIIR--AG--DASVIVAGGME  116 (393)
T ss_pred             c--------ceeehhhhhhHHHHH-HHHHHHHHH--CC--CCCEEEEEeee
Confidence            2        346788899999999 888888886  43  3467787 666

>PRK06065 acetyl-CoA acetyltransferase; Provisional

Probab=87.90  E-value=0.51  Score=55.01  Aligned_cols=110  Identities=11%  Similarity=0.036  Sum_probs=72.7

Q ss_pred             ccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcc
Q psy11265         37 GKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNT  116 (945)
Q Consensus        37 ~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~  116 (945)
                      .-|-+|.|+...+-. ..++...|++.|+++.|++.++++++|+.+ .+++.    ...|++...........++..+ .
T Consensus        10 ~vaIvG~g~t~~~~~-~~~~~~~L~~~A~~~Al~dagl~~~dID~~-i~~~~----~~~~~~~~~~a~~l~~~lG~~~-~   82 (392)
T PRK06065         10 RVAVIGAGLTLFRRR-LLETPQELAWEAASKALDEAGLELKDIDCV-VIGSA----PDAFDGVHMKGEYLSHGSGGIR-K   82 (392)
T ss_pred             ceEEEEecccCCcCC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEecc----CCcccccccHHHHHHHHcCCCC-C
Confidence            347789999986664 457899999999999999999999999988 67652    1234332212211212222211 1


Q ss_pred             ccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        117 LYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       117 lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                              -.+.+..+|-+|..+ +..|...|+  ++  .-..+|| .++.
T Consensus        83 --------~~~~V~~~gasG~~a-l~~A~~~I~--sG--~ad~vLVvg~e~  120 (392)
T PRK06065         83 --------PVSRVYVGGATGVMT-AIAGWYHVA--SG--LCQKVLAVAEEK  120 (392)
T ss_pred             --------CeEEEecCchhHHHH-HHHHHHHHh--CC--CCCEEEEEEeec
Confidence                    123455578888888 888888886  43  3477887 6654

>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism

Probab=87.74  E-value=0.47  Score=54.42  Aligned_cols=105  Identities=12%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             hccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccccc
Q psy11265         41 IGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKA  120 (945)
Q Consensus        41 ~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~  120 (945)
                      +|+||...+--. ..+...|++.|++..|++.++++++|+.+ .+++-.     .+.............++.. +.    
T Consensus         1 vG~g~t~~~~~~-~~~~~eL~~~A~~~Al~dagl~~~~Id~v-i~g~~~-----~~~~~~~~a~~va~~lGl~-~~----   68 (375)
T cd00829           1 VGVGMTPFGRRS-DRSPLELAAEAARAALDDAGLEPADIDAV-VVGNAA-----GGRFQSFPGALIAEYLGLL-GK----   68 (375)
T ss_pred             CeeeecCcccCC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEeccc-----ccccccchHHHHHHHcCCC-Cc----
Confidence            477888765433 67899999999999999999999999988 666541     1100000111111223332 22    


Q ss_pred             CcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        121 GNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       121 ~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                          ..+.+..+|-++..+ +..|...|+  ++  ....+|| +++.
T Consensus        69 ----~~~~v~~~c~sg~~a-l~~Aa~~I~--sG--~~~~vlv~g~e~  106 (375)
T cd00829          69 ----PATRVEAAGASGSAA-VRAAAAAIA--SG--LADVVLVVGAEK  106 (375)
T ss_pred             ----ceeeEeCccHHHHHH-HHHHHHHHH--hC--CCCEEEEEEEee
Confidence                335667789999999 888888886  33  3466777 6553

The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.

>PRK06064 acetyl-CoA acetyltransferase; Provisional

Probab=87.31  E-value=0.54  Score=54.51  Aligned_cols=109  Identities=11%  Similarity=0.008  Sum_probs=69.9

Q ss_pred             chhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccc
Q psy11265         39 YTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLY  118 (945)
Q Consensus        39 yt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~ly  118 (945)
                      +-+|.||..++= ...++...|++.|++++|++.++++++|+.+ .+++..   ...|+............++.. +.  
T Consensus         5 ~IvG~~~tp~~~-~~~~~~~eLa~~a~~~Al~dagl~~~~Id~v-i~g~~~---~~~~~~~~~~a~~va~~lGl~-~~--   76 (389)
T PRK06064          5 AIIGVGQTKFGE-LWDVSLRDLAVEAGLEALEDAGIDGKDIDAM-YVGNMS---AGLFVSQEHIAALIADYAGLA-PI--   76 (389)
T ss_pred             EEEEccccccee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecc---cccccccccHHHHHHHHcCCC-CC--
Confidence            456888877542 2457899999999999999999999999988 665530   011211111111112233332 11  


Q ss_pred             ccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        119 KAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       119 k~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                            -.+.+-.+|-++..+ +..|..+|+  ++  .-..+|| +++.
T Consensus        77 ------~~~~v~~aCasg~~a-i~~A~~~I~--sG--~~~~vLv~G~e~  114 (389)
T PRK06064         77 ------PATRVEAACASGGAA-LRQAYLAVA--SG--EADVVLAAGVEK  114 (389)
T ss_pred             ------CeeEEeCCcHHHHHH-HHHHHHHHH--CC--CCCEEEEEEEEe
Confidence                  124566789999999 899999997  33  3467788 6654

>KOG0551|consensus

Probab=87.12  E-value=0.35  Score=54.34  Aligned_cols=76  Identities=14%  Similarity=0.223  Sum_probs=55.1

Q ss_pred             ccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHHhhhhccccccccc--CCCCCCCCCccccccccceeecc
Q psy11265        427 QLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTV--KPPIMSHQWPENVGILGIEFYFP  504 (945)
Q Consensus       427 ~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~~~~~e~~~~~~l--~~~~~t~~~~~~vGI~ai~~Y~P  504 (945)
                      +-+++|   .|...|++||++||.++|+.|...|.++|+-    .-..|+++.+|  |.+             |-++|+.
T Consensus        74 E~ep~E---~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D~dlnavLY~NRA-------------Aa~~~l~  133 (390)
T KOG0551|consen   74 EGEPHE---QAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCADPDLNAVLYTNRA-------------AAQLYLG  133 (390)
T ss_pred             cCChHH---HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCCccHHHHHHhhHH-------------HHHHHHH
Confidence            344444   7899999999999999999999999999982    22234444333  222             4567777


Q ss_pred             ccccchhHhhhhcCcCcc
Q psy11265        505 SQYVDQTELEKHDQVSAG  522 (945)
Q Consensus       505 ~~~l~~~el~~~~g~d~g  522 (945)
                      .++-.+.+-.+++-.+|.
T Consensus       134 NyRs~l~Dcs~al~~~P~  151 (390)
T KOG0551|consen  134 NYRSALNDCSAALKLKPT  151 (390)
T ss_pred             HHHHHHHHHHHHHhcCcc
Confidence            777777777777777665

>PRK05656 acetyl-CoA acetyltransferase; Provisional

Probab=86.58  E-value=0.68  Score=53.93  Aligned_cols=109  Identities=11%  Similarity=0.026  Sum_probs=71.7

Q ss_pred             chhccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++.++=-.   ..+....|+..|++.+|++.+++|++|+.+ .+++..    ..+++... .......++..+.
T Consensus         5 ~Ivg~~rTpfgk~~g~~~~~~~~~La~~A~~~AL~~agl~~~dID~v-i~g~~~----~~~~~~~~-a~~va~~lGl~~~   78 (393)
T PRK05656          5 VIVAATRTAIGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEV-ILGQVL----TAGAGQNP-ARQAAIKAGLPHS   78 (393)
T ss_pred             EEEEcccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEec----CCCCCCcH-HHHHHHHcCCCCC
Confidence            55678888765321   347789999999999999999999999988 787761    01111110 1111123333221


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .        -.+.+..+|-++..+ +..|...|+  ++  ....+|| +++.
T Consensus        79 ~--------p~~~V~~~Casg~~a-i~~A~~~I~--sG--~~d~vLv~G~E~  117 (393)
T PRK05656         79 V--------PAMTLNKVCGSGLKA-LHLAAQAIR--CG--DAEVIIAGGQEN  117 (393)
T ss_pred             c--------ceEEecccchhHHHH-HHHHHHHHH--cC--CCCEEEEEEEhh
Confidence            2        246777899999999 888888886  33  3456777 6653

>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.21  E-value=1.3  Score=49.55  Aligned_cols=51  Identities=24%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             hchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccc
Q psy11265        735 TKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       735 v~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~  789 (945)
                      .+.|-..=++.|||-++|+..-|=-.|+++. +  +| .|-+++.+|-|-.++.-
T Consensus       298 l~~s~~~L~~~GNMSSatvLfVL~d~l~~~~-~--~g-~~Gl~~A~GPGf~sElv  348 (356)
T COG3424         298 LELSWDVLREYGNMSSATVLFVLEDTLQKAP-K--SG-SRGLMFAMGPGFCSELV  348 (356)
T ss_pred             HHHHHHHHHHhCCccchhhHHHHHHHHHhcC-C--CC-cceeeeecCCcceeeee
Confidence            3333344489999999999999999999863 2  68 89999999999887754

>PRK09051 beta-ketothiolase; Provisional

Probab=85.50  E-value=0.89  Score=53.05  Aligned_cols=109  Identities=12%  Similarity=0.025  Sum_probs=69.5

Q ss_pred             chhccCCccccCC---CCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGFC---SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~~---~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|-+++.++=.   ...+....|+..|++.+|++.+++|++|+.+ .+++-.. ....|-...  . .....++...+
T Consensus         6 ~Ivg~~rtp~g~~~g~~~~~~~~eL~~~A~~~AL~~agi~~~dID~v-i~g~~~~-~~~~~~~~a--~-~~~~~~Gl~~~   80 (394)
T PRK09051          6 VVVSGVRTAIGTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHV-VFGHVIP-TEPRDMYLS--R-VAAINAGVPQE   80 (394)
T ss_pred             EEEecccCCccCCCCcCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEE-EEeeecc-ccCCCccHH--H-HHHHHcCCCCC
Confidence            4556666654321   1466889999999999999999999999999 7776511 000111110  0 01122233222


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      .        -++.+-.+|-++..| +..|...|+  ++  .-..+|| +++
T Consensus        81 ~--------p~~~V~~aCaSg~~A-l~~A~~~I~--sG--~~d~vLvvG~E  118 (394)
T PRK09051         81 T--------PAFNVNRLCGSGLQA-IVSAAQAIL--LG--DADVAIGGGAE  118 (394)
T ss_pred             C--------ceEEecccchHHHHH-HHHHHHHHH--cC--CCCEEEEEeeh
Confidence            3        346778899999999 888888896  43  3467777 665

>PRK05790 putative acyltransferase; Provisional

Probab=85.49  E-value=0.87  Score=52.94  Aligned_cols=108  Identities=10%  Similarity=0.007  Sum_probs=69.6

Q ss_pred             chhccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhc-ccccccC
Q psy11265         39 YTIGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASI-PKLKEDG  114 (945)
Q Consensus        39 yt~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~-~~l~~~G  114 (945)
                      |-+|.|++.++--.   ..+++..|++.|++.+|++.++++++|+.+ .+++...   +. ++...  .... ..++...
T Consensus         5 ~IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~v-i~g~~~~---~~-~~~~~--~~~~~~~~gl~~   77 (393)
T PRK05790          5 VIVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEV-IMGQVLQ---AG-AGQNP--ARQAALKAGLPV   77 (393)
T ss_pred             EEEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeE-EEEEecC---CC-CCCcH--HHHHHHHcCCCC
Confidence            55788888876532   258899999999999999999999999988 6776410   00 01110  0101 1122211


Q ss_pred             ccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        115 NTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       115 n~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +.        -.+.+-.+|-++..+ +..|...|+  ++  ....+|| ..|.
T Consensus        78 ~~--------~~~~v~~~Casg~~a-l~~A~~~I~--sG--~~d~vLv~G~e~  117 (393)
T PRK05790         78 EV--------PALTINKVCGSGLKA-VALAAQAIR--AG--DADIVVAGGQES  117 (393)
T ss_pred             CC--------ceeeecccchHHHHH-HHHHHHHHH--cC--CCCEEEEEeeec
Confidence            11        234566799999999 888889896  43  3467776 6653

>PRK09052 acetyl-CoA acetyltransferase; Provisional

Probab=84.96  E-value=1.1  Score=52.51  Aligned_cols=109  Identities=11%  Similarity=0.032  Sum_probs=70.4

Q ss_pred             chhccCCccccCCCC----CccHHHHHHHHHHHHHHhc-cCCHHhhcccccccCCcccccccccccchhhhhhccccccc
Q psy11265         39 YTIGLGQAKMGFCSD----LEDINSICLTVVSNLMKRY-ELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKED  113 (945)
Q Consensus        39 yt~GLGq~~m~~~~~----~EDivsla~~a~~~Ll~~~-~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~  113 (945)
                      |-+|-+++.++=-..    .++...|+..|++.+|++. ++++++|+.+ ++++-   ....+++..+-. -+...++..
T Consensus         9 ~Ivg~~rTpfg~~~~g~~~~~s~~eLa~~A~~~AL~~a~gl~~~dID~v-i~g~~---~~~~~~~~~~ar-~~~~~~Gl~   83 (399)
T PRK09052          9 YIVAATRTPVGKAPRGMFKNTRPDDLLAHVLRSAVAQVPGLDPKLIEDA-IVGCA---MPEAEQGLNVAR-IGALLAGLP   83 (399)
T ss_pred             EEEEeccCCcccCCCCCCCCCCHHHHHHHHHHHHHHhccCcCHHHCCEE-EEEec---CCCCCCCchHHH-HHHHHcCCC
Confidence            556777776542111    4788999999999999996 9999999999 78753   111233221111 011122322


Q ss_pred             CccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        114 GNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       114 Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      ...        -.+.+-.+|-+|..| +..|...|+  ++  ....+|| +++
T Consensus        84 ~~~--------p~~~V~~aCaSg~~A-l~~A~~~I~--sG--~~d~vLv~G~E  123 (399)
T PRK09052         84 NSV--------GGVTVNRFCASGLQA-VAMAADRIR--VG--EADVMIAAGVE  123 (399)
T ss_pred             CCC--------ceeeecchhhHHHHH-HHHHHHHHH--CC--CCCEEEEEEEe
Confidence            111        346788899999999 899999997  43  3467777 665

>PRK06059 lipid-transfer protein; Provisional

Probab=84.26  E-value=1.1  Score=52.24  Aligned_cols=107  Identities=12%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             chhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCcccc
Q psy11265         39 YTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLY  118 (945)
Q Consensus        39 yt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~ly  118 (945)
                      |-+|.|++..+-  ..++...|++.|++++|++.++++++|+.| .+++-.......|    .........++..+ .  
T Consensus         7 ~Ivg~~~t~~~r--~~~~~~~La~~A~~~Al~dAgl~~~dId~v-i~~~~~~~~~~~~----~~a~~va~~lG~~~-~--   76 (399)
T PRK06059          7 YILGAGMHPWGK--WGRDFVEYGVVAARAALADAGLDWRDVQLV-VGADTIRNGYPGF----VAGATFAQALGWNG-A--   76 (399)
T ss_pred             EEEEecccccCC--CCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeccCCccCCc----cHHHHHHHHhCCCC-C--
Confidence            556788877543  467889999999999999999999999988 5543210000011    01111223333322 2  


Q ss_pred             ccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        119 KAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       119 k~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                            ..+++..+|-++..+ |..|..+|+  ++  .-..+|| +++.
T Consensus        77 ------~~~~v~~~Casg~~a-l~~A~~~I~--sG--~~~~vLvvg~e~  114 (399)
T PRK06059         77 ------PVSSSYAACASGSQA-LQSARAQIL--AG--LCDVALVVGADT  114 (399)
T ss_pred             ------ceecccchhHHHHHH-HHHHHHHHH--CC--CCCEEEEEEEcc
Confidence                  345777899999999 899999997  43  4577887 7664

>PRK08242 acetyl-CoA acetyltransferase; Validated

Probab=83.93  E-value=0.97  Score=52.93  Aligned_cols=94  Identities=7%  Similarity=-0.045  Sum_probs=63.4

Q ss_pred             CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCccccccccc-ccchhhhhhcccccccCccccccCcchhhhhhhh
Q psy11265         53 DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQ-LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS  131 (945)
Q Consensus        53 ~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd-~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~  131 (945)
                      ..-....|+..|++.+|++.+++|++|+.+ ++|+-.    ..++ +..+-.. +....+...+.        .++.+-.
T Consensus        24 ~~~~~~dLa~~A~~~al~~agi~p~~ID~v-i~G~~~----~~~~~~~~~~r~-a~~~~Gl~~~~--------pa~~Vn~   89 (402)
T PRK08242         24 HEVKPVRLAAGLLEALRDRNGLDTAAVDDV-VLGCVT----PVGDQGADIART-AVLAAGLPETV--------PGVQINR   89 (402)
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCHHHcCEE-EEEecC----CCccccccHHHH-HHHHcCCCCCC--------CeEEEcc
Confidence            345678899999999999999999999999 787761    0111 1111111 11222333333        5678889


Q ss_pred             hhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        132 TALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       132 acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      +|-++..| +..|..+|+  ++  ....+|| +++
T Consensus        90 aCaSg~~A-i~~A~~~I~--sG--~~d~vLv~G~E  119 (402)
T PRK08242         90 FCASGLEA-VNLAAAKVR--SG--WDDLVIAGGVE  119 (402)
T ss_pred             hhhhHHHH-HHHHHHHHH--cC--CCCEEEEEEEE
Confidence            99999999 898999997  33  3467777 655

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine

Probab=83.60  E-value=1.5  Score=51.19  Aligned_cols=92  Identities=8%  Similarity=-0.057  Sum_probs=60.4

Q ss_pred             ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhh
Q psy11265         55 EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL  134 (945)
Q Consensus        55 EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acy  134 (945)
                      +-...|+..|++.+|++.+++|++|+.+ .+++..    ..|.+...-.......++.. +.        -.+.+..+|-
T Consensus        21 ~~~~el~~~a~~~Al~~agl~p~dID~v-i~g~~~----~~~~g~~~~~~~~~~~lg~~-~~--------p~~~V~~~Ca   86 (393)
T cd00826          21 DLAHEAGAKAIAAALEPAGVAAGAVEEA-CLGQVL----GAGEGQNCAQQAAMHAGGLQ-EA--------PAIGMNNLCG   86 (393)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEcc----CCcccCcHHHHHHHHcCCCC-CC--------cEEEecchhH
Confidence            4458899999999999999999999999 788661    11222111111111222221 12        3567888999


Q ss_pred             hHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        135 GYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       135 g~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      ++..+ +..|..+|+  ++  .-..+|| +++
T Consensus        87 sg~~a-l~~A~~~I~--sG--~~~~vlv~g~e  113 (393)
T cd00826          87 SGLRA-LALAMQLIA--GG--DANCILAGGFE  113 (393)
T ss_pred             HHHHH-HHHHHHHHH--CC--CCCEEEEEeee
Confidence            99999 888899997  33  2356777 654

There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.

>PRK06289 acetyl-CoA acetyltransferase; Provisional

Probab=83.21  E-value=1.2  Score=51.92  Aligned_cols=110  Identities=14%  Similarity=0.000  Sum_probs=69.1

Q ss_pred             chhccCCccccC--CCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhc-ccccccCc
Q psy11265         39 YTIGLGQAKMGF--CSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASI-PKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~--~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~-~~l~~~Gn  115 (945)
                      +-+|.|+...+=  ....+..-.|++.|++.+|++.+++|++|+.+ .++|..   ...+......-..+. ......|-
T Consensus         6 ~Ivg~~~t~~~r~~~~~~~s~~eLa~eA~~~AL~dAgl~~~dID~v-i~g~~~---~~~~~~~~~~~~~~~~~~~~~~g~   81 (403)
T PRK06289          6 WVLGGYQSDFARNWTKEGRDFADLTREVVDGTLAAAGVDADDIEVV-HVGNFF---GELFAGQGHLGAMPATVHPALWGV   81 (403)
T ss_pred             EEEeCCcCccccccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecc---ccccccccccchHHHHHhhcCCCC
Confidence            456777776542  11467889999999999999999999999988 677650   011111110000000 00111111


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                               ..+.+..+|-++..| |..|...|+  ++  ....+|| ++|.
T Consensus        82 ---------~~~~v~~~Casg~~a-l~~Aa~~I~--sG--~~~~VLvvg~e~  119 (403)
T PRK06289         82 ---------PASRHEAACASGSVA-TLAAMADLR--AG--RYDVALVVGVEL  119 (403)
T ss_pred             ---------ceeecccccHHHHHH-HHHHHHHHH--cC--CCCEEEEEEEEe
Confidence                     236777899999999 899999996  43  3467888 7664

>TIGR02845 spore_V_AD stage V sporulation protein AD

Probab=83.02  E-value=0.98  Score=51.10  Aligned_cols=87  Identities=10%  Similarity=0.008  Sum_probs=61.6

Q ss_pred             ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhh
Q psy11265         55 EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL  134 (945)
Q Consensus        55 EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acy  134 (945)
                      +....|+..|+++.|++-++++++|+.+ .+++-       ++ ..+..+.....|+.            ..+++..||-
T Consensus        48 kAe~eLa~eAa~~ALekAGL~~~DID~I-IvGdl-------~~-Q~~~As~vA~~LGI------------P~fdV~~ACS  106 (327)
T TIGR02845        48 KAERKLMEDAVNLALKKANLKKDDVDFF-LAGDL-------LN-QIITANFVARDLGI------------PFLGLYGACS  106 (327)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCHHHCCEE-EEeCC-------CC-cccHHHHHHHHhCC------------CEEEEeccCH
Confidence            3567899999999999999999999888 67763       11 11111222233332            2268889999


Q ss_pred             hHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        135 GYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       135 g~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      ++..| |..|..+|+  ++  ..+.+|| +|+..
T Consensus       107 Tf~~A-L~lAa~lI~--SG--~ad~VLVV~Ssh~  135 (327)
T TIGR02845       107 TSMET-LALGAMLVD--GG--FADRVLAATSSHY  135 (327)
T ss_pred             HHHHH-HHHHHHHHh--CC--CCCEEEEEEeccc
Confidence            99999 888888996  33  4578888 77653

Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.

>PRK08170 acetyl-CoA acetyltransferase; Provisional

Probab=82.92  E-value=1.5  Score=51.72  Aligned_cols=108  Identities=6%  Similarity=-0.034  Sum_probs=69.0

Q ss_pred             chhccCCccccCCC---CCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGFCS---DLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~~~---~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++..+-..   ...+...|++.|++.+|++.++++++|+.+ .+++-.     .+.............++.+.+
T Consensus         6 ~Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~v-i~g~~~-----~~~~~~~~a~~v~~~lGl~~~   79 (426)
T PRK08170          6 YIVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEV-ILGCAM-----PSPDEANIARVVALRLGCGEK   79 (426)
T ss_pred             EEEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecc-----CCCCcChHHHHHHHHhCcCCC
Confidence            55677887765421   135889999999999999999999999998 676541     111110111111223343221


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      .        -.+.+-.+|-++..+ +..|...|+  ++  ....+|| +++
T Consensus        80 ~--------p~~~v~~~CaSg~~a-l~~A~~~I~--sG--~~d~vLv~G~E  117 (426)
T PRK08170         80 V--------PAWTVQRNCASGMQA-LDSAAANIA--LG--RADLVLAGGVE  117 (426)
T ss_pred             c--------eeeeccchhhHHHHH-HHHHHHHHH--CC--CCCEEEEEEEe
Confidence            2        234566789999999 888888886  33  3456777 655

>PRK07516 acetyl-CoA acetyltransferase; Provisional

Probab=82.60  E-value=1.3  Score=51.54  Aligned_cols=108  Identities=9%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             chhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCc-ccccccccccchhhhhhcccccccCccc
Q psy11265         39 YTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPE-EYEQESWQLTEAEKLASIPKLKEDGNTL  117 (945)
Q Consensus        39 yt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~-~~~~s~wd~s~~d~sk~~~~l~~~Gn~l  117 (945)
                      |-+|.|++.++- ...++...|++.|++++|++.++++++|+.+ .+++.. .+....+..+.    .+...+..   . 
T Consensus         5 ~Ivg~g~tpfgr-~~~~~~~eL~~eA~~~AL~dAgl~~~dId~v-i~g~~~~~~~~~~~~~~~----~~~~~~gl---~-   74 (389)
T PRK07516          5 SIVGWAHTPFGK-LDAETLESLIVRVAREALAHAGIAAGDVDGI-FLGHFNAGFSPQDFPASL----VLQADPAL---R-   74 (389)
T ss_pred             EEEeCCcceeee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEecCCccccccchhH----HHHHhcCC---C-
Confidence            556788887664 3468889999999999999999999999988 676541 00000000000    00011111   1 


Q ss_pred             cccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        118 YKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       118 yk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                           ..-.+.+..+|-++..| +..|..+|+  ++  .-..+|| +.+.
T Consensus        75 -----~~p~~~v~~~CaSg~~A-l~~A~~~I~--sG--~~d~vLvvg~e~  114 (389)
T PRK07516         75 -----FKPATRVENACATGSAA-VYAALDAIE--AG--RARIVLVVGAEK  114 (389)
T ss_pred             -----CCceeeeccccHHHHHH-HHHHHHHHH--CC--CCCEEEEEEehh
Confidence                 11345677899999999 888999997  33  3467777 6654

>PRK08304 stage V sporulation protein AD; Validated

Probab=82.41  E-value=0.99  Score=51.20  Aligned_cols=85  Identities=12%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhh
Q psy11265         56 DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALG  135 (945)
Q Consensus        56 Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg  135 (945)
                      --..|+..|+++.|++.++++++|+.+ .+++..        +..+-.+.....|+.            -.++++.||-+
T Consensus        55 AeseLa~eAa~~ALekAGI~~~DID~l-I~Gdll--------~Q~~sAs~vA~~LGI------------Pa~dV~gACST  113 (337)
T PRK08304         55 AERKMMEDAIQQALQKANLKKSDIDYL-LAGDLL--------NQIISANFAARELGI------------PFLGLYGACST  113 (337)
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHCCEE-EEECCC--------CCcchHHHHHHHhCC------------cEEEEeccCHH
Confidence            456899999999999999999999988 777650        011111112222322            24688899999


Q ss_pred             HHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        136 YLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       136 ~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +..| |..|...|+  ++  ....+|| +|+.
T Consensus       114 ~~~A-L~lAa~lI~--SG--~ad~VLVV~Ssh  140 (337)
T PRK08304        114 MMES-LALGSMLID--GG--FADRVLAATSSH  140 (337)
T ss_pred             HHHH-HHHHHHHHh--cC--CCCEEEEEEcch
Confidence            9999 888888886  32  4578888 6664

>PRK07108 acetyl-CoA acetyltransferase; Provisional

Probab=81.70  E-value=1.4  Score=51.33  Aligned_cols=94  Identities=9%  Similarity=-0.037  Sum_probs=62.8

Q ss_pred             CccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhh
Q psy11265         54 LEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTA  133 (945)
Q Consensus        54 ~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~ac  133 (945)
                      .+-...|+..|++.+|++.+++|++|+.+ .+|+-   ....++++. ........++.+.+.        .++.+..+|
T Consensus        24 ~~~~~dL~~~A~~~aL~~agi~~~~ID~v-i~G~~---~~~~~~~~~-~a~~i~~~lGl~~~~--------p~~~V~~aC   90 (392)
T PRK07108         24 MTHGATLGGHVVQHAVERAKLDPAEVEDV-IMGCA---NPEGATGAN-IARQIALRAGLPVTV--------PGMTVNRFC   90 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCHHHCCcE-EEEEe---ecccccccH-HHHHHHHHcCCCCCC--------ceeeecchh
Confidence            45578999999999999999999999998 77754   112232221 111111222333233        457888999


Q ss_pred             hhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        134 LGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       134 yg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      -++..| +..|...|+  ++  ...-+|| +.+
T Consensus        91 aSg~~A-l~~A~~~I~--sG--~~d~vlagGvE  118 (392)
T PRK07108         91 SSGLQT-IALAAQRVI--AG--EGDVFVAGGVE  118 (392)
T ss_pred             hHHHHH-HHHHHHHHH--CC--CCCEEEEEEEe
Confidence            999999 899999996  33  3456676 554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.51  E-value=0.75  Score=33.40  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             eehhhhhcccccchhHHHHhhhhhhccCCCC
Q psy11265        907 LLNYSQCKLDQKDYYSVIEHTTTVLTYDPEG  937 (945)
Q Consensus       907 ~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~  937 (945)
                      +.+.++|++.+|+|=+.++|....|+.+|+|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4578999999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	945
2lkn_A	165	Solution Structure Of The Ppiase Domain Of Human Ar		4e-28
2p8u_A	478	Crystal Structure Of Human 3-Hydroxy-3-Methylglutar		2e-26
2p8u_A	478	Crystal Structure Of Human 3-Hydroxy-3-Methylglutar		4e-23
2wya_A	460	Crystal Structure Of Human Mitochondrial 3-Hydroxy-		6e-26
2fa3_A	450	Hmg-Coa Synthase From Brassica Juncea In Complex Wi		9e-17
2fa3_A	450	Hmg-Coa Synthase From Brassica Juncea In Complex Wi		5e-15
2f82_A	450	Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo		1e-16
2f82_A	450	Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo		5e-15
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		3e-08
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		5e-05
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		3e-08
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		4e-05
1tvz_A	388	Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe		2e-04
1tvz_A	388	Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe		5e-04
1tvz_A	388	Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe		6e-04
1xpk_B	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		2e-04
1xpk_B	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		5e-04
1xpk_B	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		7e-04
1xpk_D	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		2e-04
1xpk_D	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		6e-04
1xpk_D	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		7e-04
1xpl_B	390	Crystal Structure Of Staphylococcus Aureus Hmg-coa		2e-04
1xpl_B	390	Crystal Structure Of Staphylococcus Aureus Hmg-coa		6e-04
1xpl_B	390	Crystal Structure Of Staphylococcus Aureus Hmg-coa		7e-04
1xpk_C	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		2e-04
1xpk_C	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		6e-04
1xpk_C	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		7e-04

>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human Aryl-Hydrocarbon Receptor-Interacting Protein (Aip) Length = 165

Iteration: 1
 Score =  123 bits (309), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 7/133 (5%)
Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
           FH+ T   D + T+LDDSR  GKPM+L++GKKFKL VWET+V  M  GEI++F+CD   V
Sbjct: 35  FHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 94
Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
             YP V+K+LR+ A        + +RHCCGV QM      G+ DL+ L +  Q L F +E
Sbjct: 95  VLYPLVAKSLRNIA--VGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHME 152
Query: 412 LLQVESPEEYEQE 424
           +L+VESP  Y+Q+
Sbjct: 153 MLKVESPGTYQQD 165

>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 63/75 (84%)
Query: 8  NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
          +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+TVV N
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQN 83
Query: 68 LMKRYELDYAQIGQL 82
          LM+R  L Y  IG+L
Sbjct: 84 LMERNNLSYDCIGRL 98

>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478

Iteration: 1
 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 107/249 (42%), Gaps = 92/249 (36%)
Query: 549 LSIQCYLGALDACYQGYRAKA-----AKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLA 603
           LSIQCYL ALD CY  Y  K       +   K+ +L DF  ++FH+PYCKLVQKSLA   
Sbjct: 228 LSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLA--- 284
Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
                                                         R+  NDF++  +R 
Sbjct: 285 ----------------------------------------------RMLLNDFLNDQNRD 298
Query: 664 E---YEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIE 720
           +   Y G EAF  +K LEDTYF+RD                                 +E
Sbjct: 299 KNSIYSGLEAFGDVK-LEDTYFDRD---------------------------------VE 324
Query: 721 QYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSY 780
           + FM  S + F + TK  L ++N  GNMYT S+YG L S+L Q   ++L G  RIG+FSY
Sbjct: 325 KAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAG-KRIGVFSY 383
Query: 781 GSDNIKALF 789
           GS     L+
Sbjct: 384 GSGLAATLY 392

>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460

Iteration: 1
 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 109/246 (44%), Gaps = 86/246 (34%)
Query: 549 LSIQCYLGALDACYQGYRAKAA---KLTG--KELSLGDFDAVLFHTPYCKLVQKSLARLA 603
           LSIQCYL ALD CY  YR K     K  G  +  +L D   ++FHTP+CK+VQKSLA   
Sbjct: 209 LSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLA--- 265
Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
                                                         RL +NDF+SA+  T
Sbjct: 266 ----------------------------------------------RLMFNDFLSASSDT 279
Query: 664 EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYF 723
           +                               + Y+G EAF  +K LEDTY N+D+++  
Sbjct: 280 Q------------------------------TSLYKGLEAFGGLK-LEDTYTNKDLDKAL 308
Query: 724 MSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSD 783
           +  S+  F++ TK  LYL+   GNMYT SLYGCL SLL     + L G SRIG FSYGS 
Sbjct: 309 LKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAG-SRIGAFSYGSG 367
Query: 784 NIKALF 789
              + F
Sbjct: 368 LAASFF 373

>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 7  ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
          +NVGIL ++ YFP   V Q  LE HD  S GKYTIGLGQ  + FC++LED+ S+    V+
Sbjct: 2  KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 NLMKRYELDYAQIGQL 82
          +L+++Y++D  QIG+L
Sbjct: 62 SLLEKYKIDPKQIGRL 77

>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
           LS  CYL ALD+CY+    K  KL GKE S+ D D  +FH+PY KLVQKS ARL YNDF+
Sbjct: 207 LSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFL 266
Query: 609 ---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRT 649
              S+ D +  E    ++ + +L+++Y +RD+E+  +S  L +T
Sbjct: 267 RNASSIDEAAKEKFTPYSSL-SLDESYQSRDLEK--VSQQLAKT 307

>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 7  ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
          +NVGIL ++ YFP   V Q  LE HD  S GKYTIGLGQ  + FC++LED+ S+    V+
Sbjct: 2  KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 NLMKRYELDYAQIGQL 82
          +L+++Y++D  QIG+L
Sbjct: 62 SLLEKYKIDPKQIGRL 77

>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
           LS  CYL ALD+CY+    K  KL GKE S+ D D  +FH+PY KLVQKS ARL YNDF+
Sbjct: 207 LSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFL 266
Query: 609 ---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRT 649
              S+ D +  E    ++ + +L+++Y +RD+E+  +S  L +T
Sbjct: 267 RNASSIDEAAKEKFTPYSSL-SLDESYQSRDLEK--VSQQLAKT 307

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 750 TPSLYG-CLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADL 808
           TP L   C   L+++  +E L   S I L  Y  DN+KA F+RGKAH  VWN +EA AD 
Sbjct: 66  TPLLLNYCQCKLVVEEYYEVLDHCSSI-LNKY-DDNVKAYFKRGKAHAAVWNAQEAQADF 123
Query: 809 KRVAALDSTMLGPVSSMLKQLSSKL 833
            +V  LD  +   VS  L+ L +++
Sbjct: 124 AKVLELDPALAPVVSRELQALEARI 148

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLT-YD 934
           E+P   +W +L+    P+LLNY QCKL  ++YY V++H +++L  YD
Sbjct: 51  EQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYD 97

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 750 TPSLYG-CLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADL 808
           TP L   C   L+++  +E L   S I L  Y  DN+KA F+RGKAH  VWN +EA AD 
Sbjct: 60  TPLLLNYCQCKLVVEEYYEVLDHCSSI-LNKY-DDNVKAYFKRGKAHAAVWNAQEAQADF 117
Query: 809 KRVAALDSTMLGPVSSMLKQLSSKL 833
            +V  LD  +   VS  L+ L +++
Sbjct: 118 AKVLELDPALAPVVSRELQALEARI 142

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLT-YD 934
           E+P   +W +L+    P+LLNY QCKL  ++YY V++H +++L  YD
Sbjct: 45  EQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYD 91

>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9  VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
          +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+      ++
Sbjct: 3  IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
          +   + D  +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75

>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+        
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
           +T          +D +K+G
Sbjct: 63  ITD---------EDKKKIG 72

>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54

>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9  VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
          +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+      ++
Sbjct: 3  IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
          +   + D  +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75

>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+        
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
           +T          +D +K+G
Sbjct: 63  ITD---------EDKKKIG 72

>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54

>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9  VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
          +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+      ++
Sbjct: 3  IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
          +   + D  +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75

>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+        
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
           +T          +D +K+G
Sbjct: 63  ITD---------EDKKKIG 72

>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+
Sbjct: 3   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	945
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	3e-35
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	6e-26
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	2e-21
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	4e-13
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	2e-34
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	3e-25
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	1e-19
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	7e-15
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	2e-27
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	4e-22
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	2e-19
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	9e-08
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	3e-26
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	4e-23
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	1e-19
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	1e-08
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	3e-25
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	7e-20
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	9e-20
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	1e-15
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	2e-13
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	7e-12
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	9e-21
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	3e-17
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	4e-17
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	1e-09
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	3e-09
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	3e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-20
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-04

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450

 Score =  136 bits (344), Expect = 2e-34
 Identities = 81/360 (22%), Positives = 135/360 (37%), Gaps = 72/360 (20%)

Query: 492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSI 551
           +NVGIL ++ YFP   V Q  LE HD  S GKYTIGLGQ  + FC++LED+ S+      
Sbjct: 2   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61

Query: 552 Q--------------CYLGALDACYQ-----GYRAKAAKLTGKELSLG-DFDAVLFHTPY 591
                            +G+     +      +  +  +  G     G D     +    
Sbjct: 62  SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121

Query: 592 CKLVQKSLARLAYND----FISATDRSQYE--------GAEAFA---------------- 623
             L   +       D     +  TD + Y         GA A A                
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181

Query: 624 --HIKNLEDTYFNRDIEQY-----FMSHNLYRTRL--AYNDFISATDRTEYEGAEAFAHI 674
             H+ ++ D Y      +Y      +S   Y   L   Y    +  ++ E +        
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241

Query: 675 KNLEDTYFNRDIEQYF------------MSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQY 722
             +  + +N+ +++ F             S +    E    ++ +  L+++Y +RD+E+ 
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLS-LDESYQSRDLEKV 300

Query: 723 FMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
               +K  ++   +P   +   +GNMYT SLY    SL+     + L G  R+ +FSYGS
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSD-LAG-KRVVMFSYGS 358

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450

 Score =  109 bits (272), Expect = 3e-25
 Identities = 38/77 (49%), Positives = 54/77 (70%)

Query: 7  ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
          +NVGIL ++ YFP   V Q  LE HD  S GKYTIGLGQ  + FC++LED+ S+    V+
Sbjct: 2  KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61

Query: 67 NLMKRYELDYAQIGQLL 83
          +L+++Y++D  QIG+L 
Sbjct: 62 SLLEKYKIDPKQIGRLE 78

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450

 Score = 92.2 bits (228), Expect = 1e-19
 Identities = 30/58 (51%), Positives = 38/58 (65%)

Query: 238 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
           +NVGIL ++ YFP   V Q  LE HD  S GKYTIGLGQ  + FC++LED+ S+    
Sbjct: 2   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 59

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450

 Score = 77.2 bits (189), Expect = 7e-15
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPF-RSE 202
           +MFS+ +         + +  + DV  +L AR    P +F   +   +       F  S+
Sbjct: 363 TMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTSK 422

Query: 203 TPPGEYLFDGSYYLESIDDFHRRHYKK 229
               + L  G+YYL+ +D  +RR Y K
Sbjct: 423 EGILDLLAPGTYYLKEVDSLYRRFYGK 449

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388

 Score =  115 bits (288), Expect = 2e-27
 Identities = 61/327 (18%), Positives = 99/327 (30%), Gaps = 51/327 (15%)

Query: 490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT- 548
               +GI  I F+ P  Y+D T L +   V  GK+ IG+GQ +M      +DI +     
Sbjct: 4   GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANA 63

Query: 549 ---------------------------LSIQCYLGALDACYQGYRAKAAKLTGKELSLGD 581
                                       +    L  L       R+   K      + G 
Sbjct: 64  AEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAGL 123

Query: 582 FDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYE---GAEAFA-HIKNLEDTYFNRDI 637
             A         L       +   D       S  E   GA A A  + +       ++ 
Sbjct: 124 QLAKNH----VALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179

Query: 638 EQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTE 697
                       R   + +         E       I++    +               +
Sbjct: 180 NVMLTQDIYDFWRPTGHPYPMVDGPLSNETY-----IQSFAQVWDE------HKKRTGLD 228

Query: 698 YEGAEAFA-HIKNLEDTYFNRDIEQYFMSHSKQS-FERLTKPGLYLANLIGNMYTPSLYG 755
           +   +A A HI   +        +    + ++Q       +  +  +  +GN+YT SLY 
Sbjct: 229 FADYDALAFHIPYTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYL 288

Query: 756 CLVSLLIQTPWERLQGMSRIGLFSYGS 782
            L+SLL         G ++IGLFSYGS
Sbjct: 289 GLISLLENAT-TLTAG-NQIGLFSYGS 313

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388

 Score = 98.9 bits (246), Expect = 4e-22
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 5  WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 64
              +GI  I F+ P  Y+D T L +   V  GK+ IG+GQ +M      +DI +     
Sbjct: 4  GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANA 63

Query: 65 VSNLMKRYELDYAQIGQLL 83
             ++ + + +   I  ++
Sbjct: 64 AEAILTKEDKE--AIDMVI 80

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388

 Score = 90.8 bits (225), Expect = 2e-19
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 233 GTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSIC 292
           G+     +GI  I F+ P  Y+D T L +   V  GK+ IG+GQ +M      +DI +  
Sbjct: 1   GSTGSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFA 60

Query: 293 LTV 295
              
Sbjct: 61  ANA 63

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
             F+  +     + L+            LD R  +  AE+        E +      ++ 
Sbjct: 318 EFFTGELVAGYQNHLQKE-----THLALLDNRTELSIAEY--------EAMFAETLDTD- 363

Query: 204 PPGEYLFDGSYYLESIDDFHRRHYK 228
                  +  Y + +I++   R Y+
Sbjct: 364 IDQTLEDELKYSISAINN-TVRSYR 387

>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA synthase, transferase; HET: COA; 1.20A {Streptococcus mutans} PDB: 3leh_A Length = 425

 Score =  102 bits (255), Expect = 4e-23
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 4   QWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 63
           +    +GI  I F      ++  +L +       K++ GL    +      +D+ ++   
Sbjct: 32  RGSMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAG 91

Query: 64  VVSNLMKRYELDYAQIGQLL 83
             + ++     D  +I  ++
Sbjct: 92  SANEILTAE--DKEKIDMVI 109

>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA synthase, transferase; HET: COA; 1.20A {Streptococcus mutans} PDB: 3leh_A Length = 425

 Score = 92.1 bits (228), Expect = 1e-19
 Identities = 10/73 (13%), Positives = 23/73 (31%)

Query: 223 HRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFC 282
           H       +        +GI  I F      ++  +L +       K++ GL    +   
Sbjct: 20  HMASMTGGQQMGRGSMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIA 79

Query: 283 SDLEDINSICLTV 295
              +D+ ++    
Sbjct: 80  PITDDVVTLAAGS 92

>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA synthase, transferase; HET: COA; 1.20A {Streptococcus mutans} PDB: 3leh_A Length = 425

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
            +F+  + +   + L+T      +  D+L  R P+    + +I   ++  L      S  
Sbjct: 348 EIFTGTLVKGFKEQLQT------NRLDKLKRRTPLSVENYEKIFF-EEAQLDDKGNASF- 399

Query: 204 PPGEYLFDGSYYLESIDDFHRRHYKKYE 231
              +    G + L+ I + H+R Y K  
Sbjct: 400 ---KEYQTGPFALKEILE-HQRIYGKVN 423

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score =  109 bits (273), Expect = 3e-25
 Identities = 54/81 (66%), Positives = 64/81 (79%)

Query: 3  HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 62
          +    +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+
Sbjct: 19 YFQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCM 78

Query: 63 TVVSNLMKRYELDYAQIGQLL 83
          TVV NLM+R  L Y  IG+L 
Sbjct: 79 TVVQNLMERNNLSYDCIGRLE 99

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score = 93.0 bits (230), Expect = 7e-20
 Identities = 44/61 (72%), Positives = 51/61 (83%)

Query: 235 AWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 294
               +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+T
Sbjct: 20  FQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 79

Query: 295 V 295
           V
Sbjct: 80  V 80

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score = 92.6 bits (229), Expect = 9e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%)

Query: 488 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 547
           +    +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+
Sbjct: 19  YFQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCM 78

Query: 548 T 548
           T
Sbjct: 79  T 79

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score = 79.5 bits (195), Expect = 1e-15
 Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 673 HIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFE 732
            ++         D          + Y G EAF  +K LEDTYF+RD+E+ FM  S + F 
Sbjct: 278 LVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVK-LEDTYFDRDVEKAFMKASSELFS 336

Query: 733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
           + TK  L ++N  GNMYT S+YG L S+L Q   ++L G  RIG+FSYGS
Sbjct: 337 QKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAG-KRIGVFSYGS 385

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score = 73.0 bits (178), Expect = 2e-13
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 144 SMFSIHINRAAVDTLKT--LVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
           +++S+ + + A        +   L D++ RLD+R  V P  F   +  +++  H   +  
Sbjct: 390 TLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNY-I 448

Query: 202 ETPPGEYLFDGSYYLESIDDFHRRHYKK 229
                + LF+G++YL  +D+ HRR Y +
Sbjct: 449 PQGSIDSLFEGTWYLVRVDEKHRRTYAR 476

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score = 67.9 bits (165), Expect = 7e-12
 Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 9/103 (8%)

Query: 549 LSIQCYLGALDACYQGYRAKAAK-----LTGKELSLGDFDAVLFHTPYCKLVQKSLARLA 603
           LSIQCYL ALD CY  Y  K           K+ +L DF  ++FH+PYCKLVQKSLAR+ 
Sbjct: 228 LSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARML 287

Query: 604 YNDFI---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMS 643
            NDF+   +    S Y G EAF  +K LEDTYF+RD+E+ FM 
Sbjct: 288 LNDFLNDQNRDKNSIYSGLEAFGDVK-LEDTYFDRDVEKAFMK 329

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 94.9 bits (236), Expect = 9e-21
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 8  NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+      +
Sbjct: 2  AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKD 61

Query: 68 LMKRYELDYAQIGQLLQV--ESP 88
          ++   +    +IG ++ V  ES 
Sbjct: 62 IITDEDKK--KIG-MVIVATESA 81

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
            +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+    
Sbjct: 2   AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANA 58

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 83.7 bits (207), Expect = 4e-17
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
            +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+   
Sbjct: 2   AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGAN 57

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
           LS   Y+ +    +  Y  +         SL DF ++ FH P+ K+ +K+L  +  N   
Sbjct: 200 LSKDAYIRSFQQSWNEYAKRQ------GKSLADFASLCFHVPFTKMGKKALESIIDNADE 253

Query: 609 SATDR 613
           +  +R
Sbjct: 254 TTQER 258

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
             +S  +     D L          +  L+ R  V    +        +      F  E 
Sbjct: 312 EFYSATLVEGYKDHLDQA-----AHKALLNNRTEVSVDAYETFF----KRFDDVEFDEEQ 362

Query: 204 PPGEYLFDGSYYLESIDDFHRRHYKK 229
               +     +YL +I++  R +++ 
Sbjct: 363 DA-VHEDRHIFYLSNIENNVREYHRP 387

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 716 NRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRI 775
              I       +++      +  +     +GN+YT SLY  L+SLL       LQ    I
Sbjct: 244 LESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENR---DLQAGETI 300

Query: 776 GLFSYGS 782
           GLFSYGS
Sbjct: 301 GLFSYGS 307

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 93.5 bits (232), Expect = 1e-20
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 35/182 (19%)

Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFK-LEVWETLVKHMSIGEISKFVCD 352
           T   H+     +S     +D+    +P++LVLGK+ K L      V  M  GE +     
Sbjct: 69  TCFLHYRAWTKNSQ-HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVG 127

Query: 353 KSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEL 412
             L  AY                  ++       V                 DL + +E+
Sbjct: 128 WEL--AYG-----------------KEGNFSFPNV-------------PPMADLLYEVEV 155

Query: 413 LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 472
           +  +  +E +     +T  E++ +  + K DGN+L+K   ++ A+ +Y  A+ Y+    +
Sbjct: 156 IGFDETKEGKAR-SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM 214

Query: 473 KQ 474
            Q
Sbjct: 215 FQ 216

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 893 DEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
            +       +K P  LN + C +  K Y   I H   VLT + +
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
             N KALFRRGKA   +   + A  D ++     
Sbjct: 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 83  LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 142
           +      +  +    +T  E++ +  + K DGN+L+K   ++ A+ +Y  A+ Y+    +
Sbjct: 155 VIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM 214

Query: 143 NSM------------FSIHINRAAV 155
             +               H+N AA 
Sbjct: 215 FQLYGKYQDMALAVKNPCHLNIAAC 239

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 48/178 (26%)

Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
            V         D    + D      + ++  +G+   L++    E  ++ M  GE S   
Sbjct: 46  IVEVALEGYYKD---KLFDQ-----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY 97

Query: 351 CDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTI 410
              S    Y F S                            G E     +  + +L + +
Sbjct: 98  LKPS----YAFGSV---------------------------GKEKFQ--IPPNAELKYEL 124

Query: 411 ELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
            L   E      +ESW++   EKL     +KE G   +K G  + AL +Y   + +LE
Sbjct: 125 HLKSFE----KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 91  YEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE----------QL 140
             +ESW++   EKL     +KE G   +K G  + AL +Y   + +LE          Q 
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190

Query: 141 MLNSMFSIHINRAAV 155
                 + H+N A  
Sbjct: 191 AQALRLASHLNLAMC 205

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
              ++E+ +K   L++   LN + C L  + + + IE     L  D  
Sbjct: 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
           S+N K L RRG+AH+ V + E A AD ++V  L 
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 7e-13
 Identities = 107/650 (16%), Positives = 194/650 (29%), Gaps = 177/650 (27%)

Query: 149 HINRAAVDTLKTLVTKLSDVQDRLDARRPV-PPAEFTRILAAKKENLHKYPFRSETPPGE 207
           +  +  +   +       D +D  D  + +    E   I+ +K                 
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---------- 65

Query: 208 YLFD------GSYYLESIDDFHRRHYK----KYEAGTAWPENVGILGIEFY--------- 248
            LF            + +++  R +YK      +     P  +  + IE           
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 249 FPSQYVDQ----TELEKH-DQVSAGKYTI-----GLG--------------QAKMGF--- 281
           F    V +     +L +   ++   K  +     G G              Q KM F   
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 282 ------C----SDLEDINSICLTVHFHFVTQLCD-SDNTILDDSRKLGKPMQLVLGKKFK 330
                 C    + LE +  +   +  ++ T   D S N  L       +  +L+  K ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 331 LEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL---RDAAKHSADG-TEQSKRHCCG 386
                 L+       +   V +    +A+    K L   R   K   D  +  +  H   
Sbjct: 245 ----NCLL-------VLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISL 291

Query: 387 VQMHTGY---EDLNELLK----KSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPK 439
                     E  + LLK    + QDL           P E    + +      L+ I +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL-----------PREVLTTNPRR-----LSIIAE 335

Query: 440 LKEDG-NTL--YKAGNIQGALDKYSTA----LGYLEQLMLKQTFVNRTVKPPIMSHQWPE 492
              DG  T   +K        DK +T     L  LE    ++ F   +V        +P 
Sbjct: 336 SIRDGLATWDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------FPP 383

Query: 493 NVGI----LGIEFYFPSQYVDQTELEK-HDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 547
           +  I    L + ++   +      + K H      KY++   Q K    S    I SI L
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLH------KYSLVEKQPKESTIS----IPSIYL 433

Query: 548 TLSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPY----CKLVQK-SLA 600
            L ++     AL  +    Y       +   +          H  +     +  ++ +L 
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 601 RLAYND--FISATDRSQYEGAEAFAHIKN-LED--TYFNRDIEQYFMSHNLYRTRL--AY 653
           R+ + D  F+    R       A   I N L+    Y     + Y   ++    RL  A 
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYERLVNAI 548

Query: 654 NDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQY-FMSHNRTEYEGAE 702
            DF+           E   ++   + T    D+ +   M+ +   +E A 
Sbjct: 549 LDFL--------PKIE--ENLICSKYT----DLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 61/450 (13%), Positives = 118/450 (26%), Gaps = 149/450 (33%)

Query: 581 DFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYF-NRDIEQ 639
           DF+       Y  ++         + F+   D            ++++  +     +I+ 
Sbjct: 8   DFETGEHQYQYKDILSVFE-----DAFVDNFD---------CKDVQDMPKSILSKEEIDH 53

Query: 640 YFMS-HNLYRTRL-----------AYNDFISATDRTEYEG-AEAFAHIKNLEDTYFNRDI 686
             MS   +  T                 F+    R  Y+            E    +   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----EQRQPSMMT 109

Query: 687 EQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIG 746
             Y    +R  Y   + FA               +Y +S   Q + +L +          
Sbjct: 110 RMYIEQRDRL-YNDNQVFA---------------KYNVS-RLQPYLKLRQ---------- 142

Query: 747 NMYTPSLYGCLVSLLIQTPWERLQGMSRIG-----LFSYGSDNIKALFRRGKAHMNVWNC 801
                     L+ L        + G+   G     L    S  ++         +N+ NC
Sbjct: 143 ---------ALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 802 EEAGADLKRVAALDSTMLGPVSSM-----------------LKQL--------------- 829
                 L+ +  L   +    +S                  L++L               
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 830 --SSKLVSAYPFVSKTL---RDAAKHSADG-TEQSKRHCCGVQMHTGY---EDLNELLK- 879
             ++K  +A+    K L   R   K   D  +  +  H             E  + LLK 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 880 ---KSQDL----------------TFTIEKPND-EDWKKLNDLKIPILLNYSQCKLD--- 916
              + QDL                    +     ++WK +N  K+  ++  S   L+   
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 917 QKDYYSVIEHTTTVLTYDPEGT-VTAKVLS 945
            +  +       +V    P    +   +LS
Sbjct: 371 YRKMF----DRLSVF---PPSAHIPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 82/598 (13%), Positives = 154/598 (25%), Gaps = 225/598 (37%)

Query: 47  KMGFC----SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAE 102
            +  C    + LE +  +   +  N   R +             S  +    S Q     
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-----------SNIKLRIHSIQ----A 232

Query: 103 KLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHI-NRAAVDTL--- 158
           +L  + K K                  Y   L     L+L      ++ N  A +     
Sbjct: 233 ELRRLLKSK-----------------PYENCL-----LVLL-----NVQNAKAWNAFNLS 265

Query: 159 -KTLV-TKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYL 216
            K L+ T+   V D L A      +     L      L       E    + L     YL
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTLTP----DEV---KSLL--LKYL 311

Query: 217 E-SIDDFHRRHYKKYEAGTAWPENVGILG---IEFYFPSQYVDQTELEKHDQVSAGKYTI 272
           +    D  R      E  T  P  + I+     +             +K   +       
Sbjct: 312 DCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----- 360

Query: 273 GLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLE 332
                     S L  +        F           ++   S  +  P  L       L 
Sbjct: 361 ----------SSLNVLEPAEYRKMFD--------RLSVFPPSAHI--PTIL-------LS 393

Query: 333 V-WETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT 391
           + W  ++K   +  +   +   SLV              K   + T         + + +
Sbjct: 394 LIWFDVIKS-DVMVVVNKLHKYSLV-------------EKQPKEST---------ISIPS 430

Query: 392 GYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAG 451
            Y +L   L+    L  +I +     P+ ++ +            +     D    Y   
Sbjct: 431 IYLELKVKLENEYALHRSI-VDHYNIPKTFDSD-----------DLIPPYLDQ---Y--- 472

Query: 452 NIQGALDKYSTALGY-LEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQ 510
                   + + +G+ L+ +                  +             F   ++D 
Sbjct: 473 --------FYSHIGHHLKNIE--------------HPERMTL----------FRMVFLDF 500

Query: 511 TELE---KHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGY-R 566
             LE   +HD  +          A     + L+ +                   Y+ Y  
Sbjct: 501 RFLEQKIRHDSTAWN--------ASGSILNTLQQLKF-----------------YKPYIC 535

Query: 567 AKAAKLTGKELSLGDF----DAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAE 620
               K      ++ DF    +  L  + Y  L++  +A +A ++ I       +E A 
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLR--IALMAEDEAI-------FEEAH 584

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 87  SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL------ 140
             +  ++  +  T+ EK+ S   +KE+GN  +K   I  A+ KY  AL +          
Sbjct: 18  YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77

Query: 141 -----MLNSMFSIHINRAAV 155
                  N   S ++N A  
Sbjct: 78  ILLDKKKNIEISCNLNLATC 97

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 417 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL 470
             +  ++  +  T+ EK+ S   +KE+GN  +K   I  A+ KY  AL +    
Sbjct: 18  YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT 71

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 884 LTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
              T E  +     K  +++I   LN + C    KDY   I+H + VL  D  
Sbjct: 68  FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
            +N+KAL++ G A+M     EEA  +L + A+L+
Sbjct: 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 99  TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMF------------ 146
            E +KL S+  L++ GN L+   + + A+D Y  AL  L+ L+L                
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 147 -SIHINRAAV 155
             ++ N +  
Sbjct: 63  IPLYANMSQC 72

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 883 DLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDP 935
           D     EKP + +W +L+   IP+  N SQC L+  D +   E ++ VL  + 
Sbjct: 42  DTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKL 833
             N KALFRR KA +  W  +EA  DLK +          V+  +K ++ + 
Sbjct: 94  ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 429 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTF 476
            E +KL S+  L++ GN L+   + + A+D Y  AL  L+ L+L++  
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKP 50

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 48/181 (26%)

Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
           TV  H   +       + D      + +   +G+    ++    +  ++ M   E     
Sbjct: 167 TVEIHLEGRC---GGRMFDC-----RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILY 218

Query: 351 CDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTI 410
                   +                                G       ++ + +L + +
Sbjct: 219 LGPRY--GF-----------------------------GEAGKPKFG--IEPNAELIYEV 245

Query: 411 ELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL 470
            L   E      +ESW++   EKL     +KE G   +K G    A+ +Y   + +LE  
Sbjct: 246 TLKSFE----KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301

Query: 471 M 471
            
Sbjct: 302 Y 302

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
              ++++ K      +   LN + C L  ++Y   +E     L  D  
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
           S N K L+RRG+A + +   E A  D ++V  ++
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
            V+ H+  +L  S+    D S    +P    LGK   ++ W+  V  M  GEI   +C  
Sbjct: 52  KVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKP 109

Query: 354 SL 355
             
Sbjct: 110 EY 111

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 100 EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
                +S+ +L+++GN L+K G+  GAL  Y+ ALG        ++   H NRAA
Sbjct: 21  ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL--HRNRAA 73

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
             ++KAL+RR +A   +   ++A  DL+R  +L+
Sbjct: 96  GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 884 LTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
           +  +     D D  KL  + +  +LN   CKL   D+   ++     L  DP 
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 92  EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE-----------QL 140
           + +       + L     LK  GNT +K+ N + A+ KY+  L Y+E             
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267

Query: 141 MLNSMFSIHINRAAV 155
           +     S  +N  A 
Sbjct: 268 LQPVALSCVLNIGAC 282

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 422 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
           + +       + L     LK  GNT +K+ N + A+ KY+  L Y+E
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE 254

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
            N KAL+RR +    +   ++A ADLK+   + 
Sbjct: 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	945
2wya_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	100.0
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	100.0
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	100.0
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	99.97
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	99.97
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	99.96
2wya_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	99.96
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.95
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	99.95
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	99.95
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	99.92
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	99.88
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	99.88
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	99.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.86
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.85
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	99.81
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.78
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.78
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.77
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.77
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.77
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.77
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.76
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.76
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.76
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.76
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.76
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.74
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.74
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.74
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.73
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.72
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.71
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.71
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.69
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.69
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.67
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.65
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.64
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.61
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.58
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.55
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.55
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.55
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.55
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.55
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.53
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.53
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.47
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.43
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.42
3il3_A	323	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	99.41
4dfe_A	333	3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci	99.3
4efi_A	354	3-oxoacyl-(acyl-carrier protein) synthase; structu	99.27
4ewp_A	350	3-oxoacyl-[acyl-carrier-protein] synthase 3; trans	99.27
3s21_A	345	3-oxoacyl-[ACP] synthase III; non-decarboxylative	99.26
3h78_A	359	PQS biosynthetic enzyme; PQSD, anthranilic acid, a	99.25
3gwa_A	365	3-oxoacyl-(acyl-carrier-protein) synthase III; str	99.13
3il3_A	323	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	99.11
4ewp_A	350	3-oxoacyl-[acyl-carrier-protein] synthase 3; trans	99.07
3h78_A	359	PQS biosynthetic enzyme; PQSD, anthranilic acid, a	99.03
4dfe_A	333	3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci	98.95
3s3l_A	357	CERJ; acyltransferase, FABH homologue, KS III homo	98.95
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.95
4efi_A	354	3-oxoacyl-(acyl-carrier protein) synthase; structu	98.95
3il6_A	321	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	98.92
1mzj_A	339	Beta-ketoacylsynthase III; beta-ketosynthase, arom	98.9
1hnj_A	317	Beta-ketoacyl-acyl carrier protein synthase III; F	98.9
1ted_A	393	PKS18; thiolase fold, substrate binding tunnel, tr	98.88
2ebd_A	309	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	98.87
2x3e_A	331	3-oxoacyl-[acyl-carrier-protein] synthase 3; HED,	98.85
3s21_A	345	3-oxoacyl-[ACP] synthase III; non-decarboxylative	98.84
3il6_A	321	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	98.8
2h84_A	374	Steely1; thiolase-fold, type III polyketide syntha	98.78
3gwa_A	365	3-oxoacyl-(acyl-carrier-protein) synthase III; str	98.77
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.76
1zow_A	313	3-oxoacyl-[acyl-carrier-protein] synthase III; FAB	98.74
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.71
1ub7_A	322	3-oxoacyl-[acyl-carrier protein] synthase; fatty a	98.69
1u0m_A	382	Putative polyketide synthase; type III polyketide	98.66
3s3l_A	357	CERJ; acyltransferase, FABH homologue, KS III homo	98.64
1u6e_A	335	3-oxoacyl-[acyl-carrier-protein] synthase III; tra	98.59
1hnj_A	317	Beta-ketoacyl-acyl carrier protein synthase III; F	98.51
1mzj_A	339	Beta-ketoacylsynthase III; beta-ketosynthase, arom	98.48
2ebd_A	309	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	98.41
2h84_A	374	Steely1; thiolase-fold, type III polyketide syntha	98.4
2d3m_A	406	Pentaketide chromone synthase; chalcone synthase,	98.39
1ted_A	393	PKS18; thiolase fold, substrate binding tunnel, tr	98.36
3led_A	392	3-oxoacyl-acyl carrier protein synthase III; struc	98.36
1ub7_A	322	3-oxoacyl-[acyl-carrier protein] synthase; fatty a	98.36
1zow_A	313	3-oxoacyl-[acyl-carrier-protein] synthase III; FAB	98.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.35
1u0m_A	382	Putative polyketide synthase; type III polyketide	98.32
2x3e_A	331	3-oxoacyl-[acyl-carrier-protein] synthase 3; HED,	98.3
1u6e_A	335	3-oxoacyl-[acyl-carrier-protein] synthase III; tra	98.3
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.24
2p0u_A	413	Stilbenecarboxylate synthase 2; polyketide synthas	98.23
1ee0_A	402	2-pyrone synthase; polyketide synthase, thiolase f	98.23
3oit_A	387	OS07G0271500 protein; type III polyketide synthase	98.22
2d3m_A	406	Pentaketide chromone synthase; chalcone synthase,	98.21
3ov2_A	393	Curcumin synthase; type III polyketide synthase, t	98.19
3oit_A	387	OS07G0271500 protein; type III polyketide synthase	98.18
1ee0_A	402	2-pyrone synthase; polyketide synthase, thiolase f	98.17
1i88_A	389	CHS2, chalcone synthase 2; polyketide synthase, tr	98.13
3a5r_A	387	Benzalacetone synthase; chalcone synthase, type II	98.1
3awk_A	402	Chalcone synthase-like polyketide synthase; type I	98.07
1xes_A	413	Dihydropinosylvin synthase; native structure, tran	98.05
3ov2_A	393	Curcumin synthase; type III polyketide synthase, t	98.04
3a5r_A	387	Benzalacetone synthase; chalcone synthase, type II	98.03
2p0u_A	413	Stilbenecarboxylate synthase 2; polyketide synthas	98.01
3e1h_A	465	PKSIIINC, putative uncharacterized protein; resorc	97.95
3led_A	392	3-oxoacyl-acyl carrier protein synthase III; struc	97.95
3e1h_A	465	PKSIIINC, putative uncharacterized protein; resorc	97.92
3euo_A	379	Type III pentaketide synthase; alpha helix, acyltr	97.87
3euo_A	379	Type III pentaketide synthase; alpha helix, acyltr	97.76
1i88_A	389	CHS2, chalcone synthase 2; polyketide synthase, tr	97.73
3awk_A	402	Chalcone synthase-like polyketide synthase; type I	97.58
1xes_A	413	Dihydropinosylvin synthase; native structure, tran	97.58
3v7i_A	413	Putative polyketide synthase; type III polyketide	97.19
3v7i_A	413	Putative polyketide synthase; type III polyketide	97.08
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.56
2iik_A	418	3-ketoacyl-COA thiolase, peroxisomal; fatty acid m	90.8
4dd5_A	396	Acetyl-COA acetyltransferase; structural genomics,	90.06
3lma_A	347	Stage V sporulation protein AD (spovad); NESG, str	89.6
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	89.0
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	87.06
4e1l_A	395	Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich,	86.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	85.71
3ss6_A	394	Acetyl-COA acetyltransferase; structural genomics,	84.29
1ulq_A	401	Putative acetyl-COA acetyltransferase; structural	80.73

>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-40  Score=380.60  Aligned_cols=288  Identities=34%  Similarity=0.537  Sum_probs=240.3

Q ss_pred             CccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc---------------------
Q psy11265        490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT---------------------  548 (945)
Q Consensus       490 ~~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~---------------------  548 (945)
                      +|++|||.+|++|+|+.+|+.+||++++|++++||++|+|+++|+|++++||++|||++                     
T Consensus         2 m~~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~ii~   81 (460)
T 2wya_A            2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEV   81 (460)
T ss_dssp             CCSSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred             CCCceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence            47899999999999999999999999999999999999999999999999999999999                     


Q ss_pred             ---------cCc------------chhhHHH---HHHHHhHHHHHHHHhCccccCCCcceeeecCCcce--EEEec-ccc
Q psy11265        549 ---------LSI------------QCYLGAL---DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCK--LVQKS-LAR  601 (945)
Q Consensus       549 ---------Lsl------------~~~~~~l---daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~k--LV~as-~ar  601 (945)
                               .+.            .+.+.++   .||+|++   +||..|.       +||..+....+  +|+.+ +++
T Consensus        82 aT~t~~~~~ps~a~~v~~~l~~~g~~~~~a~D~~~aC~g~~---~al~~A~-------~~i~~g~~~~~lvvv~~s~~~~  151 (460)
T 2wya_A           82 GTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGT---ASLFNAA-------NWMESSSWDGRYAMVVCGDIAV  151 (460)
T ss_dssp             ECSCCSCSSSCHHHHHGGGTGGGTCCCCBCCEEESGGGHHH---HHHHHHH-------HHHTSTTCCSCEEEEEEEEEEC
T ss_pred             EeCCCCCCCCchHHHHHHHHhccCCCCeeEechhhhhhhHH---HHHHHHH-------HHHHhccccceEEEEEeccccc
Confidence                     222            2333334   4999999   5777777       88888764333  55566 998


Q ss_pred             ccccccccccCcccccchhhhH-----hhhccc--CccccccccccccccccccccccccccchhchHHhhhhhhHHHhh
Q psy11265        602 LAYNDFISATDRSQYEGAEAFA-----HIKNLE--DTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHI  674 (945)
Q Consensus       602 y~~~~~~~~~E~tqgaGAvA~l-----~i~~~~--~~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~  674 (945)
                      |...    +.++++|+||+||+     .+..+.  .+.++.+..|||||......+.++|++|..+|+.+.+  .+|+++
T Consensus       152 ~~d~----~~~~~~GdGA~A~l~~~~~~~~~~~~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~--~v~~~~  225 (460)
T 2wya_A          152 YPSG----NARPTGGAGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALD--RCYTSY  225 (460)
T ss_dssp             CCSS----TTGGGCEEEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHH--HHHHHH
T ss_pred             cccc----cccccCcchHHhhhcccCCcceeecccccccccchhhhhccCCCCCCcccCCccchHHHHHhhH--HHHHHH
Confidence            8755    56889999999998     333333  2889999999999953444889999999999999887  499888


Q ss_pred             -hh--------cccccCCcchHHHHHHhCCCccchHHHHHHhh-------------------------hccccccchhhH
Q psy11265        675 -KN--------LEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIK-------------------------NLEDTYFNRDIE  720 (945)
Q Consensus       675 -~~--------~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~-------------------------~~e~~~~~~~~~  720 (945)
                       ++        +.......+.+|+++||+||.+|+.++++.++                         +.++.+.+++++
T Consensus       226 ~~~~~~~~~~~l~~~~~~~~d~d~~v~Hqp~~r~~~k~~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (460)
T 2wya_A          226 RKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLD  305 (460)
T ss_dssp             HHHHHHHHHHTTCCCCCCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHSCHHHHHHHCGGGGGGTTCCGGGGGTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHhhhhhcccchHHHHHHHHHhcchhhhhcccchhhhhhhhhhhhcCCchhhhhhhhHHH
Confidence             33        22334455677899999999999998887653                         234556678899


Q ss_pred             HHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccccccccc
Q psy11265        721 QYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKA  794 (945)
Q Consensus       721 ~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~  794 (945)
                      |.+.+...+.|..+++|++...+++|||||||+|++|+++|++.+...++| +||+|++||||..++||++++.
T Consensus       306 k~~~~~~~~~~~~~~e~~~~~~~~~GNt~sASiplaL~~ll~~~~~~~~~G-drIll~~fGSGl~s~~fs~~v~  378 (460)
T 2wya_A          306 KALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAG-SRIGAFSYGSGLAASFFSFRVS  378 (460)
T ss_dssp             HHHHHHHHHHHHHHTGGGGHHHHHHCCCGGGHHHHHHHHHHHHSCHHHHTT-CEEEEEEEETTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHhhcchhhhhhHHHhhCCcchhhHHHHHHHHHHhccccCCCC-CEEEEEEecCCccceEEEEEEe
Confidence            999999999999999999999999999999999999999999876666799 9999999999999999999984

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-35  Score=338.22  Aligned_cols=286  Identities=36%  Similarity=0.537  Sum_probs=237.2

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      +++|||.+|++|+|+.+|++++|++++|++++||.+|+|+.+|++++++||+++||++                      
T Consensus        22 ~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~agi~~~dId~li~~  101 (478)
T 2p8u_A           22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVG  101 (478)
T ss_dssp             HHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred             CCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999999                      


Q ss_pred             --------cCcchhhH------------HH---HHHHHhHHHHHHHHhCccccCCCcceeeecC--CcceEEEec-cccc
Q psy11265        549 --------LSIQCYLG------------AL---DACYQGYRAKAAKLTGKELSLGDFDAVLFHT--PYCKLVQKS-LARL  602 (945)
Q Consensus       549 --------Lsl~~~~~------------~l---daCy~~~~~~~al~~a~~~~l~~~~~v~~~~--p~~kLV~as-~ary  602 (945)
                              .+..+++.            ++   .+|++++.   ||..|.       +||..+.  -..+||+++ +++|
T Consensus       102 T~t~~~~~ps~a~~v~~~L~~lG~~~~~~~dv~~aC~gg~~---AL~~A~-------~~i~sg~~~~~~aLVV~~Eia~~  171 (478)
T 2p8u_A          102 TETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA---AVFNAV-------NWIESSSWDGRYALVVAGDIAVY  171 (478)
T ss_dssp             CSCCSCSSSCHHHHHGGGTTTTTCCCCBCCEEESGGGHHHH---HHHHHH-------HHHTSTTCCSCEEEEEEEEEECC
T ss_pred             ccCCcccCccHHHHHHHHHhhcCCCCceEEEEcchhHHHHH---HHHHHH-------HHHHcCCccCCEEEEEEeeeecc
Confidence                    22223332            12   49999995   777776       7787776  344688887 9988


Q ss_pred             cccccccccCcccccchhhhH-----hhhccc---CccccccccccccccccccccccccccchhchHHhhhhhhHHHhh
Q psy11265        603 AYNDFISATDRSQYEGAEAFA-----HIKNLE---DTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHI  674 (945)
Q Consensus       603 ~~~~~~~~~E~tqgaGAvA~l-----~i~~~~---~~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~  674 (945)
                      ...    ..++++|+||+|||     .+ .++   .++++.|..|||||......+.++|++|..+|+.++..  ++..+
T Consensus       172 ~~~----~~~~~fGdGA~A~Ll~~~~~~-~l~~~~~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~--~~~~~  244 (478)
T 2p8u_A          172 ATG----NARPTGGVGAVALLIGPNAPL-IFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDR--CYSVY  244 (478)
T ss_dssp             CSS----TTGGGCEEEEEEEEEESSCSE-EECTTCCEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHH--HHHHH
T ss_pred             cCC----CCCCcccceeEEEEEecCCCc-eEeeccceecccchhheeeecCCCcceEEcCcchHHHHHHHHHH--HHHHH
Confidence            766    46899999999998     22 223   37889999999999432336789999999999999874  88878


Q ss_pred             hh-cc--------cccCCcchHHHHHHhCCCccchHHHHHHhh-------------------------hccccccchhhH
Q psy11265        675 KN-LE--------DTYFNRDIEQYFMSHNRTEYEGAEAFAHIK-------------------------NLEDTYFNRDIE  720 (945)
Q Consensus       675 ~~-~~--------~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~-------------------------~~e~~~~~~~~~  720 (945)
                      .+ +.        ......+.+|||+||+|+.+|..++++.|.                         +.++++++++++
T Consensus       245 ~~~l~~~~~~~~~~~g~~~~did~~v~H~~~~ki~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e  324 (478)
T 2p8u_A          245 CKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVE  324 (478)
T ss_dssp             HHHHHHHHHHHTCCCCCCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHCTTGGGSGGGTTCGGGTTCCGGGCTTCHHHH
T ss_pred             HHHHhhhccccccccCCChHHcCEEEecCCcHHHHHHHHHHhCcccccccccccccccccccchhccCChhhcccchhHH
Confidence            33 33        334455677889999999999988877662                         346778899999


Q ss_pred             HHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccccccccc
Q psy11265        721 QYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKA  794 (945)
Q Consensus       721 ~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~  794 (945)
                      +.+++.+++.|++|++|++...+++|||||||+|++|.++|++.....++| +||+|++||+|...++|..++.
T Consensus       325 k~~~~~~~~~~~~k~~~~~~~~~~~GN~~saSi~l~L~~ll~~~~~~~~~G-drill~s~GsG~~~~~~~l~~~  397 (478)
T 2p8u_A          325 KAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAG-KRIGVFSYGSGLAATLYSLKVT  397 (478)
T ss_dssp             HHHHHHTHHHHHHHTTGGGHHHHHHCCCGGGHHHHHHHHHHHHSCHHHHTT-CEEEEEEEETTTEEEEEEEEEC
T ss_pred             HHHHHHhHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHhCCccCCCC-CEEEEEEEcchhhhEEEEEEEe
Confidence            999999999999999999999999999999999999999999763124589 9999999999999999999874

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A*

Probab=99.97  E-value=7.6e-32  Score=306.32  Aligned_cols=293  Identities=24%  Similarity=0.299  Sum_probs=225.4

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      .|+|||.+++.|+|..+++.++|++..|++++||++|+|+++|++++++||+++||++                      
T Consensus         5 ~m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a~~~~Id~li~~t~   84 (388)
T 3v4n_A            5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKEDKEAIDMVIVGTE   84 (388)
T ss_dssp             SCCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHHHHHHEEEEEEECS
T ss_pred             ceeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhCCcccCCEEEEEec
Confidence            4689999999999999999999999999999999999999999999999999999998                      


Q ss_pred             ----------------cCcchhhHH--H-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-cccccccccc
Q psy11265        549 ----------------LSIQCYLGA--L-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFI  608 (945)
Q Consensus       549 ----------------Lsl~~~~~~--l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~  608 (945)
                                      |+++..+.+  + .+|++++.   |+..|.       +|+..+.....||+.+ ...+.++.  
T Consensus        85 t~~~~~ps~a~~v~~~LGl~~~~~~~dv~~aC~gg~~---AL~~A~-------~~i~sg~~~~vLVvg~e~~s~~~~~--  152 (388)
T 3v4n_A           85 SSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATA---GLQLAK-------NHVALHPDKKVLVVAADIAKYGLNS--  152 (388)
T ss_dssp             SCSBSSSCHHHHHHHHTTCCSSCEEEEEESGGGHHHH---HHHHHH-------HHHHHCTTCEEEEEEEEEECCCTTC--
T ss_pred             cCCCcCccHHHHHHHHcCCCCCceEeehhhhhhHHHH---HHHHHH-------HHHhcCCCCEEEEEEehhhcccCCC--
Confidence                            444322222  2 59999994   777776       7777775455688777 77776664  


Q ss_pred             cccCcccccchhhhH-----hhhcccC--cccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhcccc
Q psy11265        609 SATDRSQYEGAEAFA-----HIKNLED--TYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLEDT  680 (945)
Q Consensus       609 ~~~E~tqgaGAvA~l-----~i~~~~~--~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~  680 (945)
                       +.+.++|+||+|||     .|+.+..  ..++.|++|||||  ..+ .+.++|+++..+|++.+..  +++.+-+..  
T Consensus       153 -~~~~lfGDGA~A~ll~~~~~il~~~~~~~~~~~~~~df~~p--~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~--  225 (388)
T 3v4n_A          153 -GGEPTQGAGAVAMLVSSEPRILALKEDNVMLTQDIYDFWRP--TGHPYPMVDGPLSNETYIQSFAQ--VWDEHKKRT--  225 (388)
T ss_dssp             -TTGGGCEEEEEEEEEEESCSSEEECSCCEEEECCCCSEECB--TTCSSCEECHHHHHHHHHHHHHH--HHHHHHHHH--
T ss_pred             -CCCCccccceeEEEeecCCCceEEeccccccchhccccccC--CCCCCceeccHhHHHHHHHHHHH--HHHHHHHHh--
Confidence             56899999999998     5655543  5677899999999  444 6889999999999999874  888883322  


Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+..|+|++|+||++|+.++++.++..    .+..+        .+.+....+++....+++||+|+||+|++|.++
T Consensus       226 g~~~~did~~v~Hqp~~k~~~ka~~ril~~----~~~~~--------~~~l~~~~e~~~~~~~~~GN~~sASi~l~L~~~  293 (388)
T 3v4n_A          226 GLDFADYDALAFHIPYTKMGKKALLAKISD----QTEAE--------QERILARYEESIIYSRRVGNLYTGSLYLGLISL  293 (388)
T ss_dssp             CCCGGGCSEEEECCSSHHHHHHHHHHHSTT----SCHHH--------HHHHHHHHHHHTTTGGGTCCCGGGHHHHHHHHH
T ss_pred             CCCHHHCCEEEeCCCcchHHHHHHHHHHhc----ccHHH--------HHHhCCCHHHHhhHHHhcCchHHHHHHHHHHHH
Confidence            234456788999999999999999887411    01111        233344455677788999999999999999999


Q ss_pred             hcc-CCccccCCCcEEEEEecCCCcccccccccccc-ccccc-chhhhhhh-hhhhccccc
Q psy11265        761 LIQ-TPWERLQGMSRIGLFSYGSDNIKALFRRGKAH-MNVWN-CEEAGADL-KRVAALDST  817 (945)
Q Consensus       761 L~~-~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~-~~~~~-~~~a~~~l-~r~~idds~  817 (945)
                      |++ ..  ..+| +||+|++||+|..++||++++.. ++... ...-.+.| +|..++...
T Consensus       294 l~~~g~--~~~G-d~ill~s~GsG~~ae~~~~~v~~~~~~~~~~~~~~~~l~~r~~~~~~~  351 (388)
T 3v4n_A          294 LENATT--LTAG-NQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAE  351 (388)
T ss_dssp             HHHCSS--CCTT-CEEEEEEEETTTEEEEEEEEECTTGGGSCCHHHHHHHHHTCEECCHHH
T ss_pred             HHhcCc--CCCC-CEEEEEEecCcceeEEEEEEEccCHHHHHHhhhHHHHHhCCccCCHHH
Confidence            997 32  2389 99999999999999999999844 22221 11124455 566666555

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*

Probab=99.96  E-value=1.3e-31  Score=309.96  Aligned_cols=285  Identities=28%  Similarity=0.431  Sum_probs=229.7

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      |++|||.+|++|+|..++++++|++++|++++||..|+|+.++++|+++||+.+||++                      
T Consensus         1 ~~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~agi~~~~Id~li~~   80 (450)
T 2f82_A            1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVG   80 (450)
T ss_dssp             CCSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred             CCceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHcCcCHHHCCEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999998                      


Q ss_pred             ------------------cCc----chhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecC-Cc-ceEEEec-cccc
Q psy11265        549 ------------------LSI----QCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHT-PY-CKLVQKS-LARL  602 (945)
Q Consensus       549 ------------------Lsl----~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~-p~-~kLV~as-~ary  602 (945)
                                        |++    .+....+ .+|++++.   |+..|.       ++|..+. ++ ..||+.+ ...|
T Consensus        81 t~t~~~~~p~~a~~v~~~lgl~g~~~~~~~~v~~aC~gg~~---AL~~A~-------~~I~sg~~~~~~vLVvg~e~~~~  150 (450)
T 2f82_A           81 SETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA---ALLNCV-------NWVESNSWDGRYGLVICTDSAVY  150 (450)
T ss_dssp             CCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECSGGGHHHH---HHHHHH-------HHHHSTTCCSCEEEEEEEEEECC
T ss_pred             ecCCCCCCCcHHHHHHHHhCCcCCCCceEEEhhhhhHHHHH---HHHHHH-------HHHHcCCCcCCeEEEEEeeeccc
Confidence                              233    1211222 49999995   666666       7777776 33 4588776 7665


Q ss_pred             cccccccccCcccccchhhhH-----hhhccc---CccccccccccccccccccccccccccchhchHHhhhhhhHHHhh
Q psy11265        603 AYNDFISATDRSQYEGAEAFA-----HIKNLE---DTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHI  674 (945)
Q Consensus       603 ~~~~~~~~~E~tqgaGAvA~l-----~i~~~~---~~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~  674 (945)
                      ...    ..+.+.|+||+|||     .+ .+.   .|+++.+++|||||......+.++|.++..+|++++.  .+++.+
T Consensus       151 ~~~----~~~~~fGDGA~A~ll~~~~~~-~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~--~~~~~~  223 (450)
T 2f82_A          151 AEG----PARPTGGAAAIAMLIGPDAPI-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALD--SCYKHL  223 (450)
T ss_dssp             SSS----TTGGGCEEEEEEEEEESSCSE-EEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHH--HHHHHH
T ss_pred             cCC----CCCcccccceEEEEeccCCce-EEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHH--HHHHHH
Confidence            432    46789999999988     22 222   3778889999999942223678899999999999887  488877


Q ss_pred             -hhcc---cccCCcchHHHHHHhCCCccchHHHHHHhh-------------------------hccccccchhhHHHhhh
Q psy11265        675 -KNLE---DTYFNRDIEQYFMSHNRTEYEGAEAFAHIK-------------------------NLEDTYFNRDIEQYFMS  725 (945)
Q Consensus       675 -~~~~---~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~-------------------------~~e~~~~~~~~~~~~~~  725 (945)
                       +++.   ......+..|||++|+|+.+|..++++.+.                         +.+++|++++++|.+..
T Consensus       224 l~~~~~~~~agl~~~did~~v~Hq~~~~i~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ek~~~~  303 (450)
T 2f82_A          224 CNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQ  303 (450)
T ss_dssp             HHHHHHHHSSCCCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHGGGTTCCHHHHHTCHHHHHHHHH
T ss_pred             HHHhhhccccCCChhhcCEEEecCChHHHHHHHHHHhcccccccccccccccccccccccccccccccccchhHHHHHhh
Confidence             3222   223445667889999999999988877762                         12456788899999999


Q ss_pred             cchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccccccccc
Q psy11265        726 HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKA  794 (945)
Q Consensus       726 ~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~  794 (945)
                      .+++.|++|+.||+.+.+++|||||||+|++|.++|++.. ..++| +||+|++||+|....++..++.
T Consensus       304 ~~~~~~~~k~~~s~~~~~~~GN~~saSi~l~L~~~l~~~~-~~~~G-d~ill~s~GsG~~~~~~~l~~~  370 (450)
T 2f82_A          304 LAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKH-SDLAG-KRVVMFSYGSGSTATMFSLRLC  370 (450)
T ss_dssp             HHHHHHHHHTGGGCHHHHHHCCCGGGHHHHHHHHHHHHHG-GGCTT-CEEEEEEEETTTEEEEEEEEEC
T ss_pred             hhHHHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHhCc-cCCCC-CEEEEEeecCCcccEEEEEEEe
Confidence            9999999999999999999999999999999999998742 23489 9999999999999999998763

>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.8e-30  Score=301.21  Aligned_cols=233  Identities=33%  Similarity=0.525  Sum_probs=191.0

Q ss_pred             CCCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccc
Q psy11265          4 QWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLL   83 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~   83 (945)
                      |+|+||||.+|++|+|++||+.+||++++|++++||++|+||++|+||+++||++|||++||+++|++.+++|++|++| 
T Consensus         1 sm~~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~i-   79 (460)
T 2wya_A            1 SMPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRL-   79 (460)
T ss_dssp             CCCSSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEE-
T ss_pred             CCCCceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCc
Q psy11265         84 QVESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTL  158 (945)
Q Consensus        84 ~v~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~  158 (945)
                      +|+|+          |..+.+++.     .+|+..|++      -..++|+.+||+|++.| |..|..||+  ++++.+.
T Consensus        80 i~aT~----------t~~~~~ps~a~~v~~~l~~~g~~------~~~a~D~~~aC~g~~~a-l~~A~~~i~--~g~~~~~  140 (460)
T 2wya_A           80 EVGTE----------TIIDKSKAVKTVLMELFQDSGNT------DIEGIDTTNACYGGTAS-LFNAANWME--SSSWDGR  140 (460)
T ss_dssp             EEECS----------CCSCSSSCHHHHHGGGTGGGTCC------CCBCCEEESGGGHHHHH-HHHHHHHHT--STTCCSC
T ss_pred             EEEeC----------CCCCCCCchHHHHHHHHhccCCC------CeeEechhhhhhhHHHH-HHHHHHHHH--hccccce
Confidence            99999          555555554     556655544      12578999999999999 999999997  6666777


Q ss_pred             ceee-ecccccccccCCCCCCC------------c-ceeeccccccccccccCcccCCCCCCcc-ccCcc----hhHHHH
Q psy11265        159 KTLV-TKLSDVQDRLDARRPVP------------P-AEFTRILAAKKENLHKYPFRSETPPGEY-LFDGS----YYLESI  219 (945)
Q Consensus       159 ~~LV-asdia~y~~~~~~~~t~------------P-~~~~~~~~~~~~~~~~~Df~rP~~~~~~-~vdG~----~YL~~l  219 (945)
                      .++| +||++.|...+ .++++            | ..+.. .....++.+.+|||||+..++. .+||+    +|+.+.
T Consensus       141 lvvv~~s~~~~~~d~~-~~~~~GdGA~A~l~~~~~~~~~~~-~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g  218 (460)
T 2wya_A          141 YAMVVCGDIAVYPSGN-ARPTGGAGAVAMLIGPKAPLALER-GLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRAL  218 (460)
T ss_dssp             EEEEEEEEEECCCSST-TGGGCEEEEEEEEEESSCSEEECT-TCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHH
T ss_pred             EEEEEecccccccccc-ccccCcchHHhhhcccCCcceeec-ccccccccchhhhhccCCCCCCcccCCccchHHHHHhh
Confidence            7888 99999998744 44554            2 22322 1122367999999999987765 68996    999999


Q ss_pred             HHHHHHHHhhhccC---CCCCCccccceee-eecCCCcccccc
Q psy11265        220 DDFHRRHYKKYEAG---TAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       220 d~~~~~y~~r~~~~---~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      +++|+.|.++....   .....++.+++++ +++|.|+.+|.+
T Consensus       219 ~~v~~~~~~~~~~~~~~~l~~~~~~~~d~d~~v~Hqp~~r~~~  261 (460)
T 2wya_A          219 DRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQ  261 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCGGGCSEEEECCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhcccchHHHH
Confidence            99999998876531   1111245567788 999999999865

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.95  E-value=4.2e-28  Score=243.70  Aligned_cols=131  Identities=46%  Similarity=0.786  Sum_probs=112.2

Q ss_pred             CCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCc--cchhhH
Q psy11265        290 SICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPF--VSKTLR  367 (945)
Q Consensus       290 ~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~--~~~~lr  367 (945)
                      .+|++|+|||+|+|+++||++||||++|++|++|+||.|+||+|||+||.+|++||+++|+|||++  |||.  +++.+|
T Consensus        28 ~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~ipp~l--aYG~p~v~~~~r  105 (165)
T 2lkn_A           28 QDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKH--VVLYPLVAKSLR  105 (165)
T ss_dssp             CTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEEEECCHHH--HSSHHHHHHHHT
T ss_pred             CCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEEEEECHHH--hcCCcchhhhhh
Confidence            479999999999998667999999999999999999999999999999999999999999999999  8985  355677


Q ss_pred             hhhcccCCCCcccccccccccc-----cccccccccccCCCCcEEEEEEEEeeeCCchhhhh
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQM-----HTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQE  424 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m-----~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke  424 (945)
                      ++.... .+ .....+|||+.+     ..|+.+++.+++++++|+||||||+|++|++|++|
T Consensus       106 ~~~~~~-~p-~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~eyeke  165 (165)
T 2lkn_A          106 NIAVGK-DP-LEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTYQQD  165 (165)
T ss_dssp             TGGGSS-TT-TTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTCCCC
T ss_pred             hccccC-CC-ccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccccCC
Confidence            765431 21 224568888842     36888888889999999999999999999999775

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*

Probab=99.95  E-value=6e-29  Score=283.25  Aligned_cols=292  Identities=24%  Similarity=0.302  Sum_probs=224.9

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+|||.+++.|+|+.++++++|++..+.+++||++++|+++|+|++++||+.+||++                       
T Consensus         1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~~~~~~Id~li~~t~~   80 (396)
T 1xpm_A            1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATES   80 (396)
T ss_dssp             -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHHHHHHEEEEEEECSS
T ss_pred             CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhcCCHHHCCEEEEEeCC
Confidence            468999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ---------------cCcch--hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-ccccccccccc
Q psy11265        549 ---------------LSIQC--YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFIS  609 (945)
Q Consensus       549 ---------------Lsl~~--~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~~  609 (945)
                                     |+++.  ....+ .+|++++.   |+..|.       ++|..+.-...||+.+ .+++.++.   
T Consensus        81 ~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~sg~~---Al~~A~-------~~I~sg~~~~vLvvg~e~s~~~~~~---  147 (396)
T 1xpm_A           81 AVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATP---AIQLAK-------DYLATRPNEKVLVIATDTARYGLNS---  147 (396)
T ss_dssp             CSBSSSCHHHHHHHHTTCCSSCEEEEEESTTTTHHH---HHHHHH-------HHHTTCTTCEEEEEEEEEECCCTTC---
T ss_pred             CCCCCCCHHHHHHHHhCCCCCceEEEeccccHHHHH---HHHHHH-------HHHHcCCCCEEEEEeehhhccccCC---
Confidence                           33321  11112 49999984   666666       6676664444688776 88876554   


Q ss_pred             ccCcccccchhhhH-----hhhcccC--cccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhccccc
Q psy11265        610 ATDRSQYEGAEAFA-----HIKNLED--TYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLEDTY  681 (945)
Q Consensus       610 ~~E~tqgaGAvA~l-----~i~~~~~--~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~  681 (945)
                      +.+.+.|+||+||+     .|+.+..  |.++.|+.|||||.  .+ .+.++|+.+..+|++++..  +++.+-+..  .
T Consensus       148 ~~~~~~GdGA~A~vl~~~~~i~~~~~~~g~~~~d~~~~~~p~--~~~~~~~~G~~~~~~~~~~~~~--~~~~~L~~a--g  221 (396)
T 1xpm_A          148 GGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPT--GHKYPLVDGALSKDAYIRSFQQ--SWNEYAKRQ--G  221 (396)
T ss_dssp             SSGGGCEEEEEEEEEEESCSSEEECSCCEEEECCCCSEECBT--TCSSCEECHHHHHHHHHHHHHH--HHHHHHHHH--T
T ss_pred             CCCcccccceEEEEeccCCceEEEEeccccccceEEEeeccC--CCCCeEEEcHHHHHHHHHHHHH--HHHHHHHHc--C
Confidence            56889999999988     4544443  77888999999994  32 5677999999999988874  777772212  2


Q ss_pred             CCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHh
Q psy11265        682 FNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLL  761 (945)
Q Consensus       682 ~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL  761 (945)
                      ...+..||+++|+|++++..++++.++.  .          ...++.+.+..+++||+.+.+++||+|+||+|++|.++|
T Consensus       222 l~~~did~~~~H~~~~~~~~~~~~~l~~--~----------~~~~~~e~~~~~~~~s~~~~~~~GN~~saSi~l~L~~~l  289 (396)
T 1xpm_A          222 KSLADFASLCFHVPFTKMGKKALESIID--N----------ADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLL  289 (396)
T ss_dssp             CCGGGCSEEEECCSSHHHHHHHHHTTGG--G----------SCHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHH
T ss_pred             CCHHHCCEEEecCCchHHHHHHHHHHHh--h----------cccCCHHHHHHHhhhhhhhhhhcCchHHHHHHHHHHHHH
Confidence            3446678999999999999998888741  1          113455677889999999999999999999999999999


Q ss_pred             ccCCccccCCCcEEEEEecCCCcccccccccccc-cccccch-hhhhhh-hhhhccccc
Q psy11265        762 IQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAH-MNVWNCE-EAGADL-KRVAALDST  817 (945)
Q Consensus       762 ~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~~~~~-~~~~~~~-~a~~~l-~r~~idds~  817 (945)
                      ++...+  +| +||+|++||+|..+++|.+++.+ +...... .-.+.| +|..++++.
T Consensus       290 ~~~~l~--~G-d~ill~s~GsG~~~~~~~~~v~~~~~~~~~~~~~~~~l~~r~~~~~~~  345 (396)
T 1xpm_A          290 ENRDLQ--AG-ETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDA  345 (396)
T ss_dssp             HHSCCC--TT-CEEEEEEEETTTEEEEEEEEECTTGGGGCCHHHHHHHHHTCEECCHHH
T ss_pred             HcCCCC--CC-CEEEEEEECcchhheEEEEEEcccHHHHhhcccHHHHHhCCccCCHHH
Confidence            875322  89 99999999999999999998854 2211111 124556 666666655

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.5e-25  Score=260.96  Aligned_cols=232  Identities=39%  Similarity=0.558  Sum_probs=185.0

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      ||++|||.+|++|+|+++|+++||++++|++++||++|+|+++++++.+.||+++||++|++++|++.+++|++|+.| +
T Consensus        21 ~~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~agi~~~dId~l-i   99 (478)
T 2p8u_A           21 QSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRL-E   99 (478)
T ss_dssp             HHHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEE-E
T ss_pred             CCCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-E
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             ccCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcc
Q psy11265         85 VESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLK  159 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~  159 (945)
                      |+|+          |..+.+++.     .+|...|..     + ..++++.+||+|++.| |..|..+|+  ++.|+.++
T Consensus       100 ~~T~----------t~~~~~ps~a~~v~~~L~~lG~~-----~-~~~~dv~~aC~gg~~A-L~~A~~~i~--sg~~~~~~  160 (478)
T 2p8u_A          100 VGTE----------TIIDKSKSVKTNLMQLFEESGNT-----D-IEGIDTTNACYGGTAA-VFNAVNWIE--SSSWDGRY  160 (478)
T ss_dssp             EECS----------CCSCSSSCHHHHHGGGTTTTTCC-----C-CBCCEEESGGGHHHHH-HHHHHHHHT--STTCCSCE
T ss_pred             EEcc----------CCcccCccHHHHHHHHHhhcCCC-----C-ceEEEEcchhHHHHHH-HHHHHHHHH--cCCccCCE
Confidence            9999          554444443     334443322     1 2678999999999999 999999997  66666899


Q ss_pred             eee-ecccccccccCCCCCCC-------------cceeeccccccccccccCcccCCCCCCc-cccCcc----hhHHHHH
Q psy11265        160 TLV-TKLSDVQDRLDARRPVP-------------PAEFTRILAAKKENLHKYPFRSETPPGE-YLFDGS----YYLESID  220 (945)
Q Consensus       160 ~LV-asdia~y~~~~~~~~t~-------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~-~~vdG~----~YL~~ld  220 (945)
                      +|| ++|++.|...+ .+++.             |.+|+... ...++.|.+|||+|.+.++ +.+||.    +|+.+++
T Consensus       161 aLVV~~Eia~~~~~~-~~~~fGdGA~A~Ll~~~~~~~l~~~~-~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~  238 (478)
T 2p8u_A          161 ALVVAGDIAVYATGN-ARPTGGVGAVALLIGPNAPLIFERGL-RGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALD  238 (478)
T ss_dssp             EEEEEEEEECCCSST-TGGGCEEEEEEEEEESSCSEEECTTC-CEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHH
T ss_pred             EEEEEeeeecccCCC-CCCcccceeEEEEEecCCCceEeecc-ceecccchhheeeecCCCcceEEcCcchHHHHHHHHH
Confidence            999 99999998754 44544             22333221 1236788999999996554 468996    8999999


Q ss_pred             HHHHHHHhhhccCC---CCCCccccceee-eecCCCcccccc
Q psy11265        221 DFHRRHYKKYEAGT---AWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       221 ~~~~~y~~r~~~~~---~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .+++.+.++.....   .....+.+++++ +++|.|+.+|.+
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~g~~~~did~~v~H~~~~ki~~  280 (478)
T 2p8u_A          239 RCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQ  280 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCGGGCSEEEECCSSHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccCCChHHcCEEEecCCcHHHHH
Confidence            99999988765100   000234567788 899999999865

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A*

Probab=99.88  E-value=2.8e-23  Score=236.03  Aligned_cols=220  Identities=17%  Similarity=0.223  Sum_probs=179.9

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      ..|+|||.+|+.|+|+.+|+++||+++.|++++||++|+||.+|+|+++.||+++||++|++++|++.+  |++|+.| +
T Consensus         4 ~~m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a~--~~~Id~l-i   80 (388)
T 3v4n_A            4 GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKED--KEAIDMV-I   80 (388)
T ss_dssp             SSCCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHHH--HHHEEEE-E
T ss_pred             CceeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhCC--cccCCEE-E
Confidence            458999999999999999999999999999999999999999999999999999999999999999964  9999999 9


Q ss_pred             ccCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcc
Q psy11265         85 VESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLK  159 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~  159 (945)
                      ++|+          +..+.+++.     ..|+..+++        .++++.++|+|++.| |..|..+|+  +  ++.+.
T Consensus        81 ~~t~----------t~~~~~ps~a~~v~~~LGl~~~~--------~~~dv~~aC~gg~~A-L~~A~~~i~--s--g~~~~  137 (388)
T 3v4n_A           81 VGTE----------SSIDESKAAAVVLHRLMGIQPFA--------RSFEIKEAXYGATAG-LQLAKNHVA--L--HPDKK  137 (388)
T ss_dssp             EECS----------SCSBSSSCHHHHHHHHTTCCSSC--------EEEEEESGGGHHHHH-HHHHHHHHH--H--CTTCE
T ss_pred             EEec----------cCCCcCccHHHHHHHHcCCCCCc--------eEeehhhhhhHHHHH-HHHHHHHHh--c--CCCCE
Confidence            9999          444433332     456655545        678999999999999 999999996  3  36789


Q ss_pred             eee-ecccccccccCCCCCCC------------cceeeccccccccccccCcccCCCCCCccccCcc----hhHHHHHHH
Q psy11265        160 TLV-TKLSDVQDRLDARRPVP------------PAEFTRILAAKKENLHKYPFRSETPPGEYLFDGS----YYLESIDDF  222 (945)
Q Consensus       160 ~LV-asdia~y~~~~~~~~t~------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~~~vdG~----~YL~~ld~~  222 (945)
                      +|| ++|+..+....+.+++.            |.++........++.|.+|||||.++....++|+    +|++.+.++
T Consensus       138 vLVvg~e~~s~~~~~~~~~lfGDGA~A~ll~~~~~il~~~~~~~~~~~~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~  217 (388)
T 3v4n_A          138 VLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQV  217 (388)
T ss_dssp             EEEEEEEEECCCTTCTTGGGCEEEEEEEEEEESCSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHH
T ss_pred             EEEEEehhhcccCCCCCCCccccceeEEEeecCCCceEEeccccccchhccccccCCCCCCceeccHhHHHHHHHHHHHH
Confidence            999 99999876643444443            4333222222236689999999998877788996    899999999


Q ss_pred             HHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        223 HRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       223 ~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      ++++.++.+.        ..++++ +++|.|+.+|..
T Consensus       218 ~~~~l~~~g~--------~~~did~~v~Hqp~~k~~~  246 (388)
T 3v4n_A          218 WDEHKKRTGL--------DFADYDALAFHIPYTKMGK  246 (388)
T ss_dssp             HHHHHHHHCC--------CGGGCSEEEECCSSHHHHH
T ss_pred             HHHHHHHhCC--------CHHHCCEEEeCCCcchHHH
Confidence            9999998753        456677 889999988753

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*

Probab=99.87  E-value=2.8e-22  Score=231.93  Aligned_cols=229  Identities=33%  Similarity=0.509  Sum_probs=176.9

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      |++|||.+|++|+|+++|++++|++++|++++||+.|+||.+++||++.||+.+||++|++++|++.+++|++|+.| +|
T Consensus         1 ~~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~agi~~~~Id~l-i~   79 (450)
T 2f82_A            1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRL-EV   79 (450)
T ss_dssp             CCSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEE-EE
T ss_pred             CCceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHcCcCHHHCCEE-EE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             cCCcccccccccccchhhhhhc-----ccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcce
Q psy11265         86 ESPEEYEQESWQLTEAEKLASI-----PKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKT  160 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~-----~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~  160 (945)
                      +|+          +..+.+++.     ..|+..|+.     + ...+++.+||+|++.| |..|..+|+  ++.++++.+
T Consensus        80 ~t~----------t~~~~~p~~a~~v~~~lgl~g~~-----~-~~~~~v~~aC~gg~~A-L~~A~~~I~--sg~~~~~~v  140 (450)
T 2f82_A           80 GSE----------TVIDKSKSIKTFLMQLFEKCGNT-----D-VEGVDSTNACYGGTAA-LLNCVNWVE--SNSWDGRYG  140 (450)
T ss_dssp             ECC----------CCSCSSSCHHHHHTHHHHTTTCC-----C-CBCCEECSGGGHHHHH-HHHHHHHHH--STTCCSCEE
T ss_pred             Eec----------CCCCCCCcHHHHHHHHhCCcCCC-----C-ceEEEhhhhhHHHHHH-HHHHHHHHH--cCCCcCCeE
Confidence            998          333333332     344442221     1 2678999999999999 999999997  555557899


Q ss_pred             ee-ecccccccccCCCCCCC------------cc-eeeccccccccccccCcccCCCCCCc-cccCcc----hhHHHHHH
Q psy11265        161 LV-TKLSDVQDRLDARRPVP------------PA-EFTRILAAKKENLHKYPFRSETPPGE-YLFDGS----YYLESIDD  221 (945)
Q Consensus       161 LV-asdia~y~~~~~~~~t~------------P~-~~~~~~~~~~~~~~~~Df~rP~~~~~-~~vdG~----~YL~~ld~  221 (945)
                      || ++|+..|.... .+++.            |. .++... ...++.+++|||+|...++ +.++|.    +|++++++
T Consensus       141 LVvg~e~~~~~~~~-~~~~fGDGA~A~ll~~~~~~~~~~~~-~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~  218 (450)
T 2f82_A          141 LVICTDSAVYAEGP-ARPTGGAAAIAMLIGPDAPIVFESKL-RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDS  218 (450)
T ss_dssp             EEEEEEEECCSSST-TGGGCEEEEEEEEEESSCSEEEEEEE-EEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccccCCC-CCcccccceEEEEeccCCceEEEecc-ceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHH
Confidence            99 99998776532 33332            21 122110 1226678999999986554 458886    89999999


Q ss_pred             HHHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        222 FHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       222 ~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      +++++.++.+. .. ...+..++++ +++|.++.+|.+
T Consensus       219 ~~~~~l~~~~~-~~-~agl~~~did~~v~Hq~~~~i~~  254 (450)
T 2f82_A          219 CYKHLCNKFEK-LE-GKEFSINDADYFVFHSPYNKLVQ  254 (450)
T ss_dssp             HHHHHHHHHHH-HH-SSCCCGGGCSEEEECCSSHHHHH
T ss_pred             HHHHHHHHhhh-cc-ccCCChhhcCEEEecCChHHHHH
Confidence            99999876531 00 0123456677 899999998865

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.86  E-value=9.1e-22  Score=218.16  Aligned_cols=150  Identities=23%  Similarity=0.333  Sum_probs=133.2

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEcccc-chhhhHHHHHhcCCCCcEEEEEecCCccccCCcc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKK-FKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFV  362 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g-~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~  362 (945)
                      |.|..|..|++|+|||+|++. .+|++||+|+.+++|++|.+|.| ++|+|||++|.+|++||+++|+|||++  +||..
T Consensus        59 g~g~~~~~gd~v~v~y~g~~~-~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~--~yg~~  135 (338)
T 2if4_A           59 GHGSKPSKYSTCFLHYRAWTK-NSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWEL--AYGKE  135 (338)
T ss_dssp             CBSCCCCTTCEEEEEEEEEET-TTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGG--SSCSS
T ss_pred             CCCCCCCCCCEEEEEEEEEEc-CCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEECHHH--hcCCC
Confidence            445689999999999999994 35999999988889999999999 999999999999999999999999999  99972


Q ss_pred             chhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhccchhhH
Q psy11265        363 SKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKE  442 (945)
Q Consensus       363 ~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~a~~~Ke  442 (945)
                                   |..                 ....||++++|+|+|+|+++.++.+ .++.|.++.+++++.+..++.
T Consensus       136 -------------~~~-----------------~~~~ip~~~~l~f~v~L~~~~~~~e-~~~~~~~~~~~~~~~a~~~~~  184 (338)
T 2if4_A          136 -------------GNF-----------------SFPNVPPMADLLYEVEVIGFDETKE-GKARSDMTVEERIGAADRRKM  184 (338)
T ss_dssp             -------------CCC-----------------SSSCCCTTCCEEEEEEEEEEECCCC-CBTTTBCCHHHHHHHHHHHHH
T ss_pred             -------------CCC-----------------CCCCCCCCCcEEEEEEEEEecCCcc-ccccccCCHHHHHHHHHHHHH
Confidence                         210                 0124899999999999999988544 367999999999999999999


Q ss_pred             hcccccccccHHHHHHHHHHHHHHH
Q psy11265        443 DGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       443 ~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      .||.+|+.|+|..|+..|++|+.+.
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~  209 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYM  209 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999865

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.85  E-value=2.9e-21  Score=197.31  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=91.1

Q ss_pred             cCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEcccc-chhhhHHHHHhcCCCCcEEEEEecCCccccCCc
Q psy11265        283 SDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKK-FKLEVWETLVKHMSIGEISKFVCDKSLVSAYPF  361 (945)
Q Consensus       283 ~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g-~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~  361 (945)
                      .|.+..|..|+.|+|||+|++. .+|++||+|+.+++|++|.+|.+ ++|+||+++|.+|++||+++|+|||++  +||.
T Consensus        58 ~G~G~~~~~Gd~V~v~Y~g~l~-~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~--aYG~  134 (180)
T 2f4e_A           58 EGHGSKPSKYSTCFLHYRAWTK-NSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWEL--AYGK  134 (180)
T ss_dssp             CCBSCCBCTTCEEEEEEEEEET-TTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEEECGGG--TTTT
T ss_pred             CCCCCCCCCCCEEEEEEEEEEC-CCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEEECchH--hCCc
Confidence            3445689999999999999994 36999999998889999999999 999999999999999999999999999  9997


Q ss_pred             cchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhccc
Q psy11265        362 VSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIP  438 (945)
Q Consensus       362 ~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~a~  438 (945)
                      .             |..                + ...||||++|+|+|||++|.++.+ .++.|+|+.+||+++|.
T Consensus       135 ~-------------g~~----------------~-~~~Ip~~s~l~F~VeL~~v~~~~e-~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          135 E-------------GNF----------------S-FPNVPPMADLLYEVEVIGFDETKE-GKARSDMTVEERIGAAD  180 (180)
T ss_dssp             T-------------CBS----------------S-SSCBCTTCCEEEEEEEEEESCBCC-C----------------
T ss_pred             C-------------Ccc----------------c-CCCcCCCCeEEEEEEEEEEecCcc-ccccccCCHHHHHhhcC
Confidence            2             210                0 023999999999999999998644 45699999999999763

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*

Probab=99.81  E-value=5.5e-21  Score=217.67  Aligned_cols=218  Identities=19%  Similarity=0.234  Sum_probs=173.3

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|||.+|+.|+|+.+|++++|+++.|++++||+.++||.+|+|+++.||+.+||++|++++|++  ++|++|+.| +++
T Consensus         1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~--~~~~~Id~l-i~~   77 (396)
T 1xpm_A            1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITD--EDKKKIGMV-IVA   77 (396)
T ss_dssp             -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCH--HHHHHEEEE-EEE
T ss_pred             CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhc--CCHHHCCEE-EEE
Confidence            57999999999999999999999999999999999999999999999999999999999999988  799999998 899


Q ss_pred             CCcccccccccccchhhhhh-----cccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCccee
Q psy11265         87 SPEEYEQESWQLTEAEKLAS-----IPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTL  161 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~-----~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~L  161 (945)
                      |+          ++.+.+++     ...|+..+++        ..+++.+||+|++.| |..|..+|+  +  ++.+.+|
T Consensus        78 t~----------~~~~~~p~~a~~v~~~lGl~~~~--------~~~~v~~aC~sg~~A-l~~A~~~I~--s--g~~~~vL  134 (396)
T 1xpm_A           78 TE----------SAVDAAKAAAVQIHNLLGIQPFA--------RCFEMKEACYAATPA-IQLAKDYLA--T--RPNEKVL  134 (396)
T ss_dssp             CS----------SCSBSSSCHHHHHHHHTTCCSSC--------EEEEEESTTTTHHHH-HHHHHHHHT--T--CTTCEEE
T ss_pred             eC----------CCCCCCCCHHHHHHHHhCCCCCc--------eEEEeccccHHHHHH-HHHHHHHHH--c--CCCCEEE
Confidence            98          33333222     2445555445        668899999999999 999999996  3  3678999


Q ss_pred             e-ecccccccccCCCCCCC------------cceeeccccccccccccCcccCCCCCCccccCcc----hhHHHHHHHHH
Q psy11265        162 V-TKLSDVQDRLDARRPVP------------PAEFTRILAAKKENLHKYPFRSETPPGEYLFDGS----YYLESIDDFHR  224 (945)
Q Consensus       162 V-asdia~y~~~~~~~~t~------------P~~~~~~~~~~~~~~~~~Df~rP~~~~~~~vdG~----~YL~~ld~~~~  224 (945)
                      | ++|++.+......+.+.            |.++....+...++.+++|||+|.++....++|.    +|++++.++++
T Consensus       135 vvg~e~s~~~~~~~~~~~~GdGA~A~vl~~~~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~  214 (396)
T 1xpm_A          135 VIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWN  214 (396)
T ss_dssp             EEEEEEECCCTTCSSGGGCEEEEEEEEEEESCSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHH
T ss_pred             EEeehhhccccCCCCCcccccceEEEEeccCCceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHH
Confidence            9 99987775322223332            3333333332336679999999988766667886    89999999999


Q ss_pred             HHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        225 RHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       225 ~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      ++.++.+-        ..++++ +++|.++.+|.+
T Consensus       215 ~~L~~agl--------~~~did~~~~H~~~~~~~~  241 (396)
T 1xpm_A          215 EYAKRQGK--------SLADFASLCFHVPFTKMGK  241 (396)
T ss_dssp             HHHHHHTC--------CGGGCSEEEECCSSHHHHH
T ss_pred             HHHHHcCC--------CHHHCCEEEecCCchHHHH
Confidence            99988643        345677 899999988755

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.78  E-value=5.8e-19  Score=173.99  Aligned_cols=94  Identities=29%  Similarity=0.460  Sum_probs=86.1

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+|||++|.+|++||+++|+|||++  |||.      
T Consensus        50 ~p~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~--aYG~------  119 (144)
T 3o5e_A           50 TPMIGDKVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY--AYGS------  119 (144)
T ss_dssp             CCCTTCEEEEEEEEEC--TTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGG--TTTT------
T ss_pred             cCCCCCEEEEEEEEEE--CCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHH--CcCC------
Confidence            7899999999999999  59999999998889999999999999999999999999999999999999  9997      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             .|..                   ..||||++|+|+|||++|..
T Consensus       120 -------~g~~-------------------~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          120 -------AGSL-------------------PKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             -------TCBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             -------CCCC-------------------CCcCCCCeEEEEEEEEEecC
Confidence                   2221                   24999999999999999854

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.78  E-value=9.7e-19  Score=166.37  Aligned_cols=95  Identities=22%  Similarity=0.408  Sum_probs=84.2

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCC-------CcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccC
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKL-------GKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAY  359 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~-------g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aY  359 (945)
                      ..|..|+.|+|||+|++  .||++||+|+..       ++|++|.+|.+++|+|||++|.+|++||+++|+|||++  ||
T Consensus        18 ~~p~~gd~V~v~Y~g~~--~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~ip~~~--aY   93 (119)
T 3kz7_A           18 NFPKKGDVVHCWYTGTL--PDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEW--AY   93 (119)
T ss_dssp             CCCCTTCEEEEEEEEEC--TTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGG--TT
T ss_pred             CcCCCCCEEEEEEEEEE--CCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEECcHH--hc
Confidence            36999999999999999  699999999753       58999999999999999999999999999999999999  99


Q ss_pred             CccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        360 PFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       360 G~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                      |..             |..                  ...||||++|+|+|||++|+
T Consensus        94 G~~-------------g~~------------------~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           94 GKK-------------GQP------------------DAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             CTT-------------CBG------------------GGTBCTTCCEEEEEEEEEEC
T ss_pred             CCC-------------CCC------------------CCccCcCCeEEEEEEEEEeC
Confidence            972             211                  02499999999999999974

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.77  E-value=6.1e-19  Score=178.00  Aligned_cols=108  Identities=22%  Similarity=0.318  Sum_probs=93.3

Q ss_pred             cccC-CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        285 LEDI-NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       285 ~~~~-P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      .+.. |..|+.|+|||+|++  .||++||+|+.+++|++|.+  |++|+||+++|.+|++||+++|+|||++  |||.. 
T Consensus        48 ~G~~~~~~gd~V~v~Y~g~l--~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~Ip~~l--aYG~~-  120 (167)
T 1jvw_A           48 SGKRAPAIDDKCEVHYTGRL--RDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLFIPYDL--AYGVT-  120 (167)
T ss_dssp             CCSBCCCTTCCEEEEEEEEC--TTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT-
T ss_pred             CCCcCCCCCCEEEEEEEEEE--CCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEEECchh--hCCCC-
Confidence            4556 999999999999999  59999999988889999999  4899999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhc
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLAS  436 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~  436 (945)
                                  |.+                   ..||||++|+|+|||++|.+      ..|.++.+|.-+.
T Consensus       121 ------------g~~-------------------~~Ipp~s~LiF~VeL~~i~~------~~~~~~~~e~~~~  156 (167)
T 1jvw_A          121 ------------GGG-------------------GMIPPYSPLEFDVELISIKD------GGKGRTAEEVDEI  156 (167)
T ss_dssp             ------------CSS-------------------SSSCTTCCEEEEEEEEEEGG------GCCSCBHHHHHHH
T ss_pred             ------------CCC-------------------CCcCCCCeEEEEEEEEEEEc------CCCCCCHHHHHHH
Confidence                        211                   24999999999999999965      4577888886543

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.77  E-value=1.7e-18  Score=163.37  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=85.8

Q ss_pred             cccC-CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        285 LEDI-NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       285 ~~~~-P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      .++. |..|+.|+|||+|++  .||++||+|+++++|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||.. 
T Consensus        17 ~g~~~~~~gd~V~v~y~~~~--~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~~~--ayG~~-   91 (113)
T 1yat_A           17 DGATFPKTGDLVTIHYTGTL--ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPY--AYGPR-   91 (113)
T ss_dssp             CSSCCCCTTCEEEEEEEEEE--TTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECGGG--TTTTT-
T ss_pred             CCcccCCCCCEEEEEEEEEE--CCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHH--CcCCC-
Confidence            3445 899999999999999  69999999998889999999999999999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                  +.+                   ..||||++|+|+|||+++.
T Consensus        92 ------------~~~-------------------~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           92 ------------GFP-------------------GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             ------------CBT-------------------TTBCTTCCEEEEEEEEEEC
T ss_pred             ------------CCC-------------------CCcCCCCeEEEEEEEEEeC
Confidence                        211                   2499999999999999873

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.77  E-value=1.7e-18  Score=168.55  Aligned_cols=96  Identities=25%  Similarity=0.443  Sum_probs=86.1

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      |.+..|..|+.|+|||+|++  .||++||+|+++++|++|.+|.+++|+|||++|.+|++||+++|+|||++  +||.. 
T Consensus        38 G~G~~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~ip~~~--aYG~~-  112 (133)
T 2y78_A           38 GSGAEARAGQTVSVHYTGWL--TDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL--GYGAR-  112 (133)
T ss_dssp             CSSCBCCTTSEEEEEEEEEE--TTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEECGGG--TTTTT-
T ss_pred             CCCCCCCCCCEEEEEEEEEE--CCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECcHH--hCCCC-
Confidence            34567899999999999999  69999999998889999999999999999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                                  +.                   ...||||++|+|+|||++|
T Consensus       113 ------------~~-------------------~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          113 ------------GA-------------------GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ------------CB-------------------TTTBCTTCCEEEEEEEEEC
T ss_pred             ------------CC-------------------CCCCCCCCeEEEEEEEEEC
Confidence                        11                   1249999999999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.77  E-value=7.9e-19  Score=202.50  Aligned_cols=174  Identities=25%  Similarity=0.415  Sum_probs=124.9

Q ss_pred             cccC-CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        285 LEDI-NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       285 ~~~~-P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      .|.. |..|+.|+|||+|++  .||++||||+.+++|++|.+|.|++|+||+++|.+|++||+++|+|||++  +||..+
T Consensus        42 ~g~~~~~~gd~v~v~y~~~~--~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~~~~--~yg~~g  117 (457)
T 1kt0_A           42 NGEETPMIGDKVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEY--AYGSAG  117 (457)
T ss_dssp             ----CCCBTCEEEEEEEEEC-------CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTTC
T ss_pred             CCCCCCCCCCEEEEEEEEEE--CCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEChHH--hccccC
Confidence            3444 899999999999999  59999999998889999999999999999999999999999999999999  999432


Q ss_pred             --------hh------hHh-----hh----------cccCCCCc-cc-----c---------------------------
Q psy11265        364 --------KT------LRD-----AA----------KHSADGTE-QS-----K---------------------------  381 (945)
Q Consensus       364 --------~~------lr~-----i~----------~~g~~G~~-~~-----~---------------------------  381 (945)
                              .+      +.+     +.          ..| +|.. +.     .                           
T Consensus       118 ~~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g-~~~~~p~~g~~V~v~y~g~~~g~~f~~~~~~f~~g~g~~~  196 (457)
T 1kt0_A          118 SLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKG-EGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDH  196 (457)
T ss_dssp             BTTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECC-BCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGG
T ss_pred             CCCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecC-CCCCCCCCCCEEEEEEEEEeCCeEEecCceEEEeCCCccc
Confidence                    11      111     11          111 0100 00     0                           


Q ss_pred             cccccc-----cccccccccc---------------cccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhccchhh
Q psy11265        382 RHCCGV-----QMHTGYEDLN---------------ELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLK  441 (945)
Q Consensus       382 ~~~~G~-----~m~~G~~~~~---------------~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~a~~~K  441 (945)
                      ..+.|+     .|+.|+....               ..|||++++.|+++|.++++    ..+.|++..+++...+..++
T Consensus       197 ~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~----A~~~~~~~~~~~~~~a~~~~  272 (457)
T 1kt0_A          197 DIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK----AKESWEMDTKEKLEQAAIVK  272 (457)
T ss_dssp             TCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEEC----CCCGGGSCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhccc----CcchhhcCHHHHHHHHHHHH
Confidence            001111     2344333221               13889999999999999999    78899999999999999999


Q ss_pred             HhcccccccccHHHHHHHHHHHHHHH
Q psy11265        442 EDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       442 e~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      ..||.+|++|+|..|+..|++|+.+.
T Consensus       273 ~~G~~~~~~g~~~~A~~~y~~Al~~~  298 (457)
T 1kt0_A          273 EKGTVYFKGGKYMQAVIQYGKIVSWL  298 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999975

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.77  E-value=9.9e-19  Score=168.82  Aligned_cols=94  Identities=29%  Similarity=0.462  Sum_probs=85.7

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+|||++|.+|++||+++|+|||++  |||..     
T Consensus        34 ~p~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~--aYG~~-----  104 (128)
T 3o5q_A           34 TPMIGDKVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY--AYGSA-----  104 (128)
T ss_dssp             CCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT-----
T ss_pred             cCCCCCEEEEEEEEEE--CCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEChHH--cCCCC-----
Confidence            6899999999999999  59999999988789999999999999999999999999999999999999  99972     


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                              |..                   ..||||++|+|+|||++|..
T Consensus       105 --------g~~-------------------~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A          105 --------GSL-------------------PKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             --------CBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             --------CCC-------------------CCcCCCCEEEEEEEEEEecC
Confidence                    211                   24999999999999999854

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.76  E-value=1.1e-18  Score=162.73  Aligned_cols=95  Identities=29%  Similarity=0.474  Sum_probs=84.9

Q ss_pred             ccC-CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccch
Q psy11265        286 EDI-NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSK  364 (945)
Q Consensus       286 ~~~-P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~  364 (945)
                      ++. |..|+.|+|||++++  .||++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||..  
T Consensus        12 g~~~~~~gd~V~v~y~~~~--~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~--ayG~~--   85 (107)
T 2ppn_A           12 GRTFPKRGQTCVVHYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY--AYGAT--   85 (107)
T ss_dssp             SSCCCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT--
T ss_pred             CCcCCCCCCEEEEEEEEEE--CCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH--ccCCC--
Confidence            444 899999999999999  59999999987778999999999999999999999999999999999999  99972  


Q ss_pred             hhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        365 TLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       365 ~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                 +.+                   ..||||++|+|+|||++++
T Consensus        86 -----------~~~-------------------~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           86 -----------GHP-------------------GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             -----------CBT-------------------TTBCTTCCEEEEEEEEEEC
T ss_pred             -----------CCC-------------------CCcCCCCeEEEEEEEEEeC
Confidence                       211                   2499999999999999874

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.76  E-value=2.8e-18  Score=166.27  Aligned_cols=94  Identities=30%  Similarity=0.442  Sum_probs=84.7

Q ss_pred             ccC-CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccch
Q psy11265        286 EDI-NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSK  364 (945)
Q Consensus       286 ~~~-P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~  364 (945)
                      ++. |..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+|||++|.+|++||+++|.|||++  +||..  
T Consensus        36 G~~~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip~~~--aYG~~--  109 (130)
T 2lgo_A           36 GVTKPQAGKKVTVHYDGRF--PDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQL--AYGER--  109 (130)
T ss_dssp             SSCCCCTTSEEEEEEEEEC--TTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEEECTTT--STTTT--
T ss_pred             CCccCCCCCEEEEEEEEEE--CCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECcHH--HCCCC--
Confidence            445 899999999999998  69999999998889999999999999999999999999999999999999  99972  


Q ss_pred             hhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        365 TLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       365 ~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                                 +.+                   ..||||++|+|+|||++|
T Consensus       110 -----------~~~-------------------~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          110 -----------GYP-------------------PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             -----------CCS-------------------TTSCSSCCEEEEEEEEEC
T ss_pred             -----------CCC-------------------CCcCCCCeEEEEEEEEEC
Confidence                       211                   249999999999999975

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=160.55  Aligned_cols=96  Identities=26%  Similarity=0.380  Sum_probs=86.5

Q ss_pred             ccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchh
Q psy11265        286 EDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKT  365 (945)
Q Consensus       286 ~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~  365 (945)
                      +..|..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||..   
T Consensus         3 g~~~~~gd~V~v~y~~~~--~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~--ayG~~---   75 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKL--EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSEL--GYGER---   75 (102)
T ss_dssp             CCCCCTTCEEEEEEEEEC--TTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGG--TTTTT---
T ss_pred             CCcCCCCCEEEEEEEEEE--CCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHH--CcCCC---
Confidence            346889999999999998  69999999998889999999999999999999999999999999999999  99972   


Q ss_pred             hHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        366 LRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       366 lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                +..                   ..||||++|+|+|||+++.+
T Consensus        76 ----------~~~-------------------~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           76 ----------GAP-------------------PKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             ----------CBT-------------------TTBCTTCCEEEEEEEEEEGG
T ss_pred             ----------CCC-------------------CCcCcCCeEEEEEEEEEecc
Confidence                      111                   24999999999999999976

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.76  E-value=2.7e-18  Score=165.83  Aligned_cols=98  Identities=24%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             cccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccch
Q psy11265        285 LEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSK  364 (945)
Q Consensus       285 ~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~  364 (945)
                      .+..|..|+.|+|||+|++. .||++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||..  
T Consensus        30 ~g~~~~~gd~V~v~Y~g~~~-~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~ip~~~--aYG~~--  104 (129)
T 2vn1_A           30 EENIPKKGNEVTVHYVGKLE-STGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMY--GYGDE--  104 (129)
T ss_dssp             GGGSCCTTCEEEEEEEEEET-TTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT--
T ss_pred             CCCcCCCCCEEEEEEEEEEC-CCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEEEChHH--cCCCC--
Confidence            35678999999999999983 48999999998889999999999999999999999999999999999999  99972  


Q ss_pred             hhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        365 TLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       365 ~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                 |.+                   ..||||++|+|+|||+++.+
T Consensus       105 -----------~~~-------------------~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A          105 -----------GCG-------------------ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             -----------CBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             -----------CCC-------------------CCcCCCCeEEEEEEEEEEec
Confidence                       211                   24999999999999999976

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=169.68  Aligned_cols=96  Identities=23%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             ccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchh
Q psy11265        286 EDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKT  365 (945)
Q Consensus       286 ~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~  365 (945)
                      +..|..|+.|+|||+|++. .+|++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||..   
T Consensus        38 g~~~~~gd~V~v~Y~g~l~-~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~ip~~~--aYG~~---  111 (134)
T 3b7x_A           38 GDLVAPDASVLVKYSGYLE-HMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY--AYGTL---  111 (134)
T ss_dssp             EEECCTTCEEEEEEEEECT-TCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEEEECGGG--TTTTT---
T ss_pred             CCCCCCCCEEEEEEEEEEC-CCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEEECHHH--CcCCC---
Confidence            4567789999999999994 26999999998889999999999999999999999999999999999999  99972   


Q ss_pred             hHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        366 LRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       366 lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                +.+                   ..||||++|+|+|||++|.
T Consensus       112 ----------~~~-------------------~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          112 ----------GCP-------------------PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             ----------CBT-------------------TTBCTTCCEEEEEEEEEEC
T ss_pred             ----------CCC-------------------CCcCcCCeEEEEEEEEEEe
Confidence                      211                   2499999999999999985

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.74  E-value=7.5e-18  Score=161.78  Aligned_cols=96  Identities=24%  Similarity=0.389  Sum_probs=86.2

Q ss_pred             ccCCCCCCEEEEEEEEEEecCCCcEEecCCC--CCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        286 EDINSICLTVHFHFVTQLCDSDNTILDDSRK--LGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       286 ~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~--~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      +..|..|+.|+|||+|++. .||++||+|+.  +++|++|.+|.+++|+|||++|.+|++||+++|.|||++  |||.. 
T Consensus        26 g~~~~~gd~V~v~Y~g~~~-~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~~~ip~~~--aYG~~-  101 (125)
T 4dip_A           26 HRKTKGGDLMLVHYEGYLE-KDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPAL--GYGKE-  101 (125)
T ss_dssp             SCCCCTTCEEEEEEEEEET-TTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCEEEEEECGGG--TTTTT-
T ss_pred             CCcCCCCCEEEEEEEEEEC-CCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChHH--hcCCC-
Confidence            5689999999999999993 38999999974  468999999999999999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                  |.                    ..||||++|+|+|||+++.+
T Consensus       102 ------------g~--------------------~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A          102 ------------GK--------------------GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             ------------CB--------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             ------------CC--------------------CCCCCCCeEEEEEEEEEEEc
Confidence                        21                    13999999999999999976

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.74  E-value=6.2e-18  Score=164.81  Aligned_cols=94  Identities=26%  Similarity=0.433  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.      
T Consensus        29 ~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip~~~--aYG~------   98 (135)
T 1r9h_A           29 KPTTGTTVKVHYVGTL--ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDY--GYGD------   98 (135)
T ss_dssp             CCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGG--TTTT------
T ss_pred             CCCCCCEEEEEEEEEE--CCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEChHH--cCCC------
Confidence            6899999999999999  69999999987789999999999999999999999999999999999999  9997      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             .|.+                   ..||||++|+|+|+|++|.+
T Consensus        99 -------~g~~-------------------~~Ip~~~~l~f~v~l~~i~~  122 (135)
T 1r9h_A           99 -------AGSP-------------------PKIPGGATLIFEVELFEWSA  122 (135)
T ss_dssp             -------TCBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             -------CCCC-------------------CCcCcCCcEEEEEEEEEeec
Confidence                   2221                   24999999999999999976

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.74  E-value=8.2e-18  Score=175.67  Aligned_cols=97  Identities=25%  Similarity=0.438  Sum_probs=87.5

Q ss_pred             cCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCcc
Q psy11265        283 SDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFV  362 (945)
Q Consensus       283 ~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~  362 (945)
                      .|.+..|..|+.|+|||+|++  .||++||+|+++++|++|.+|.+++|+|||++|.+|++||+++|+|||++  |||..
T Consensus       113 ~G~G~~~~~gd~V~v~Y~g~l--~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~--aYG~~  188 (209)
T 3uf8_A          113 EGSGAEARAGQTVSVHYTGWL--TDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL--GYGAR  188 (209)
T ss_dssp             CCCSCBCCTTCEEEEEEEEEE--TTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGG--TTTTT
T ss_pred             cCCCCcCCCCCEEEEEEEEEE--CCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEEECcHH--hCCCC
Confidence            445667999999999999999  69999999998889999999999999999999999999999999999999  99972


Q ss_pred             chhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        363 SKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       363 ~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                                   |..                   ..||||++|+|+|||++|
T Consensus       189 -------------g~~-------------------~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          189 -------------GAA-------------------GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             -------------CBT-------------------TTBCTTCCEEEEEEEEEC
T ss_pred             -------------CCC-------------------CCcCCCCeEEEEEEEEEC
Confidence                         211                   349999999999999975

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.73  E-value=1.3e-17  Score=174.79  Aligned_cols=92  Identities=25%  Similarity=0.374  Sum_probs=82.6

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      |.|..|..|++|+|||+|++  .||++||+|   ++|++|.+|  ++|+||+++|.+|++||+++|+|||++  |||.. 
T Consensus       127 G~G~~p~~gd~V~V~Y~g~l--~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~l--AYG~~-  196 (219)
T 3oe2_A          127 GTGPKPDANGRVEVRYVGRL--PDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQ--AYGAE-  196 (219)
T ss_dssp             CCSCCCCTTSEEEEEEEEEC--TTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT-
T ss_pred             CCCccCCCCCEEEEEEEEEE--CCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECchh--cCCCC-
Confidence            44568999999999999999  599999999   689999998  899999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                  |.+                   ..||||++|+|+|||++|.
T Consensus       197 ------------g~~-------------------~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          197 ------------GAG-------------------DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ------------CBT-------------------TTBCTTCCEEEEEEEEEEE
T ss_pred             ------------CCC-------------------CCCCCCCeEEEEEEEEEEe
Confidence                        221                   2499999999999999985

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.72  E-value=9.1e-18  Score=162.29  Aligned_cols=101  Identities=21%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhc------CCCCcEEEEEecCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKH------MSIGEISKFVCDKSLVS  357 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~------M~~GE~a~~~i~pe~~~  357 (945)
                      |.+..|..|+.|+|||+|++  .||++||+|+++++|++|.+|.+++|+||+++|.+      |++||+++|+|||++  
T Consensus        22 G~G~~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~--   97 (129)
T 1u79_A           22 GYGPEAVKGQLIKAHYVGKL--ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPEL--   97 (129)
T ss_dssp             CSSCBCCTTCEEEEEEEEEC--TTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGG--
T ss_pred             CCCCCCCCCCEEEEEEEEEE--CCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCCEEEEEEChHH--
Confidence            34567899999999999998  59999999987779999999999999999999988      999999999999999  


Q ss_pred             cCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        358 AYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       358 aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                      +||..             +....              +-...||||++|+|+|||+++
T Consensus        98 aYG~~-------------~~~~~--------------~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           98 AYGDR-------------GAGCK--------------GGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTGGG-------------CEEEE--------------TTEEEECTTCCEEEEEEEEEE
T ss_pred             ccCCC-------------CCCcc--------------ccCCcCCCCCeEEEEEEEEEe
Confidence            99972             11000              001259999999999999986

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.71  E-value=2.1e-17  Score=172.85  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=85.8

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      |.+..|..|+.|+|||+|++  .||++||+|+.+++|++|.+  +++|+||+++|.+|++||+++|+|||++  +||.  
T Consensus       116 G~G~~p~~gD~V~V~Y~g~l--~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP~~l--aYG~--  187 (213)
T 1fd9_A          116 GNGVKPGKSDTVTVEYTGRL--IDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYVPSGL--AYGP--  187 (213)
T ss_dssp             CCSCCCCTTCEEEEEEEEEE--TTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEECGGG--TTTT--
T ss_pred             CCCccCCCCCEEEEEEEEEE--CCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEECchh--ccCc--
Confidence            44668999999999999999  59999999988889999999  4899999999999999999999999999  9997  


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                 .|.+                   ..||||++|+|+|||++|.+
T Consensus       188 -----------~g~~-------------------~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          188 -----------RSVG-------------------GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             -----------CCCS-------------------SSCCTTCCEEEEEEEEEEEC
T ss_pred             -----------cCCC-------------------CCCCCCCeEEEEEEEEEEEc
Confidence                       2211                   24999999999999999975

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.71  E-value=4.4e-17  Score=162.78  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||++    +|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||..     
T Consensus        59 ~p~~gd~V~v~Y~g~l--~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~~--aYG~~-----  125 (157)
T 2jwx_A           59 RPVKGQVVTVHLQTSL--ENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKY--CYGPQ-----  125 (157)
T ss_dssp             CCCTTEEEEEEEEEEC--TTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGG--TTTTT-----
T ss_pred             CCCCCCEEEEEEEEEE--CCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECchh--cCCcc-----
Confidence            7899999999999999  599999984    8999999999999999999999999999999999999  99972     


Q ss_pred             hhhcccCCC-CcccccccccccccccccccccccCCCCcEEEEEEEEeeeCC
Q psy11265        368 DAAKHSADG-TEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESP  418 (945)
Q Consensus       368 ~i~~~g~~G-~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p  418 (945)
                              | ..                   ..||||++|+|+|||+++.++
T Consensus       126 --------g~~~-------------------~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          126 --------GSRS-------------------PYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             --------CCSS-------------------SCCCTTCCEEEEEEEEEEEEC
T ss_pred             --------cccC-------------------CCcCCCCeEEEEEEEEEEEcc
Confidence                    2 11                   249999999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.69  E-value=9.6e-17  Score=152.62  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||++    +|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||..     
T Consensus        29 ~~~~gd~V~v~y~g~~--~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~~~--ayG~~-----   95 (118)
T 2awg_A           29 RPVKGQVVTVHLQTSL--ENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKY--CYGPQ-----   95 (118)
T ss_dssp             CCCTTSEEEEEEEEEC--TTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECGGG--TTTTT-----
T ss_pred             cCCCCCEEEEEEEEEE--CCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEChHH--ccCCC-----
Confidence            6899999999999998  599999974    7999999999999999999999999999999999999  99972     


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                              +.+                   ..||||++|+|+|||+++.+
T Consensus        96 --------~~~-------------------~~Ip~~~~l~f~v~l~~v~d  118 (118)
T 2awg_A           96 --------GRS-------------------PYIPPHAALCLEVTLKTAVD  118 (118)
T ss_dssp             --------CBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             --------CCC-------------------CccCCCCeEEEEEEEEEecC
Confidence                    211                   24999999999999999853

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.69  E-value=1.9e-16  Score=175.13  Aligned_cols=135  Identities=23%  Similarity=0.360  Sum_probs=122.8

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccch---hhhHHHHHhcCCCCcEEEEEecCCccccCCccch
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFK---LEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSK  364 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~v---I~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~  364 (945)
                      +|..|++|+|||+|++   +|++||+|     |++|.+|.|.+   +++||++|..|++||++.+.|+|++  +||..  
T Consensus        40 ~p~~~~~v~v~y~g~~---~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~--  107 (336)
T 1p5q_A           40 KPNEGAIVEVALEGYY---KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSV--  107 (336)
T ss_dssp             CCCTTCEEEEEEEEEE---TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTT--
T ss_pred             CCCCCCeEEEEEEEEE---CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcC--
Confidence            6999999999999999   79999987     89999999974   8999999999999999999999999  89973  


Q ss_pred             hhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhccCHHHhhhccchhhHhc
Q psy11265        365 TLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDG  444 (945)
Q Consensus       365 ~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~ms~eEkl~~a~~~Ke~G  444 (945)
                                 |..                  ...||+++++.|+++|.++++    ..+.|++..+++...+..++..|
T Consensus       108 -----------g~~------------------~~~i~~~~~l~f~~~L~~~~~----A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A          108 -----------GKE------------------KFQIPPNAELKYELHLKSFEK----AKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             -----------CBG------------------GGTBCSSCCEEEEEEEEEEEC----CCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             -----------CCC------------------ccCCCCCCeEEEEEEEeeccc----ccchhcCCHHHHHHHHHHHHHHH
Confidence                       211                  013899999999999999999    68889999999999999999999


Q ss_pred             ccccccccHHHHHHHHHHHHHHH
Q psy11265        445 NTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       445 N~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      +.+|+.|+|.+|+..|++|+.+.
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~  177 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWL  177 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999864

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.69  E-value=1.1e-16  Score=168.46  Aligned_cols=94  Identities=26%  Similarity=0.348  Sum_probs=84.0

Q ss_pred             CcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       284 ~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      |.+..|..|+.|+|||+|++  .||++||+|+.+++|++|.+  |++|+||+++|.+|++||+++|+|||++  +||.. 
T Consensus       131 G~G~~p~~gD~V~V~Y~g~l--~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP~~l--aYG~~-  203 (224)
T 1q6h_A          131 GKGEAPKDSDTVVVNYKGTL--IDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIPPEL--AYGKA-  203 (224)
T ss_dssp             CSSCCCCTTCEEEEEEEEEE--TTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEECGGG--TTTTT-
T ss_pred             ccCccccCCCEEEEEEEEEe--CCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEECchh--hcCcC-
Confidence            44668999999999999999  59999999998889999999  4899999999999999999999999999  99972 


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                  |.                   .. ||||++|+|+|||++|.
T Consensus       204 ------------g~-------------------~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          204 ------------GV-------------------PG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ------------CB-------------------TT-BCTTCCEEEEEEEEEEC
T ss_pred             ------------CC-------------------CC-CCCCCEEEEEEEEEEeC
Confidence                        21                   12 99999999999999873

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1e-16  Score=156.20  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|+.|+|||+|++  .||++||+    ++|++|.+|.+++|+||+++|.+|++||+++|+|||++  +||..     
T Consensus        33 ~~~~gd~V~v~Y~g~~--~dG~~fds----~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~~~--aYG~~-----   99 (135)
T 2d9f_A           33 RPVKGQVVTVHLQTSL--ENGTRVQE----EPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKY--CYGPQ-----   99 (135)
T ss_dssp             CCCTTSEEEEEEEEEE--SSSCEEEE----EEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECHHH--HTCTT-----
T ss_pred             cCCCCCEEEEEEEEEE--CCCCEEec----CCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChhH--ccCcC-----
Confidence            7899999999999999  59999997    38999999999999999999999999999999999999  99972     


Q ss_pred             hhhcccCCC-CcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADG-TEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G-~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                              + ..                   ..||||++|+|+|||+++.+
T Consensus       100 --------~~~~-------------------~~Ip~~~~l~f~vel~~v~~  123 (135)
T 2d9f_A          100 --------GSRS-------------------PYIPPHAALCLEVTLKTAVD  123 (135)
T ss_dssp             --------CCSS-------------------SCCCTTCCEEEEEEEEEEES
T ss_pred             --------CcCC-------------------CccCCCCeEEEEEEEEEeec
Confidence                    2 11                   24999999999999999988

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.65  E-value=2.9e-16  Score=158.45  Aligned_cols=125  Identities=22%  Similarity=0.262  Sum_probs=94.4

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .+++|+.|+|||+|++  .||++||+|+.+++|++|.+|.|++|+|||++|.+|++||+++|+|||++  |||..++.+.
T Consensus        24 ~i~~gd~V~v~Y~g~l--~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~--AYG~~~~~lv   99 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKL--DDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDA--AFGVPSPDLI   99 (169)
T ss_dssp             SCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGG--TTCCCCGGGE
T ss_pred             cCCCCCEEEEEEEEEE--CCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHH--hcCCCChHHE
Confidence            5788999999999999  69999999988779999999999999999999999999999999999999  9999888764


Q ss_pred             hhhcccCCCCccccccccccccc----ccccc-------------cccccC-CCCcEEEEEEEEeeeCC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMH----TGYED-------------LNELLK-KSQDLTFTIELLQVESP  418 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~----~G~~~-------------~~~~ip-p~s~L~FeVELl~v~~p  418 (945)
                      +..+..  ..+.......||.+.    .|..-             ++.+-| +|.+|.|+|||++++++
T Consensus       100 ~~vp~~--~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~A  166 (169)
T 4dt4_A          100 QYFSRR--EFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPA  166 (169)
T ss_dssp             EEEEGG--GGTTTCCCCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEESCC
T ss_pred             EEeCHH--HCCCcCCCCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEeeC
Confidence            332221  010011123354322    12100             112234 89999999999999763

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.64  E-value=9.3e-16  Score=166.96  Aligned_cols=94  Identities=24%  Similarity=0.440  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      +|..|+.|+|||+|++  .||++||+|+++++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.      
T Consensus        66 ~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ipp~~--aYG~------  135 (280)
T 1q1c_A           66 MPMIGDRVFVHYTGWL--LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEY--AYGS------  135 (280)
T ss_dssp             CCCTTCEEEEEEEEEE--TTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGG--TTTT------
T ss_pred             CCCCCCEEEEEEEEEE--CCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEECcHH--hCCC------
Confidence            4899999999999999  69999999998889999999999999999999999999999999999999  9997      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             .|.+                   ..||||++|+|+|+|++|..
T Consensus       136 -------~g~~-------------------~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A          136 -------AGSP-------------------PKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             -------TCBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             -------cCcc-------------------CCCCCCCcEEEEEEeeeecc
Confidence                   2221                   24999999999999999976

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.61  E-value=1.3e-15  Score=171.20  Aligned_cols=97  Identities=14%  Similarity=0.232  Sum_probs=86.0

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCC-CCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSR-KLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKT  365 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~-~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~  365 (945)
                      ..|..|+.|+|||+|++  .||++||+|. .+++|++|.+|.|++|+|||++|.+|++||+++|+|||++  |||..   
T Consensus       258 ~~~~~gd~V~v~y~g~l--~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~--aYG~~---  330 (356)
T 3jxv_A          258 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEY--AYGST---  330 (356)
T ss_dssp             CCCCTTCEEEEEEEEEE--SSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGG--TTTTS---
T ss_pred             CCCCCCCEEEEEEEEEE--CCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHH--ccCCC---
Confidence            58999999999999999  5999999984 5679999999999999999999999999999999999999  99972   


Q ss_pred             hHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        366 LRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       366 lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                +..                 ....||||++|+|+|||++|++
T Consensus       331 ----------~~~-----------------~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          331 ----------ESK-----------------QDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ----------CEE-----------------SSSEECTTCCEEEEEEEEEEEC
T ss_pred             ----------CcC-----------------CCCcCCcCCeEEEEEEEEEEEc
Confidence                      110                 0134999999999999999975

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.58  E-value=1.5e-15  Score=151.54  Aligned_cols=121  Identities=13%  Similarity=0.174  Sum_probs=89.0

Q ss_pred             CCCCEEEEEEEEEEecCCCcEEecCCCC-------------CcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCcc
Q psy11265        290 SICLTVHFHFVTQLCDSDNTILDDSRKL-------------GKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV  356 (945)
Q Consensus       290 ~~g~~V~VhY~g~l~~~dGtvfDsS~~~-------------g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~  356 (945)
                      ++|+.|+|||+|++   ||++||||+.+             ++|++|.+|.|++|+|||++|.+|++||+++|+|||++ 
T Consensus         3 ~~Gd~V~v~Y~g~l---dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~-   78 (157)
T 3pr9_A            3 EKGKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK-   78 (157)
T ss_dssp             CTTCEEEEEEEEEE---TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGG-
T ss_pred             CCCCEEEEEEEEEE---CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHH-
Confidence            57899999999999   89999999753             38999999999999999999999999999999999999 


Q ss_pred             ccCCccchhhHhhhcccCCCCcc-ccccccccccc-ccccc-----------cccccC-CCCcEEEEEEEEeeeC
Q psy11265        357 SAYPFVSKTLRDAAKHSADGTEQ-SKRHCCGVQMH-TGYED-----------LNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       357 ~aYG~~~~~lr~i~~~g~~G~~~-~~~~~~G~~m~-~G~~~-----------~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                       |||..++.+.+..+..  ..+. ......||.+. .+...           ++.+-| +|.+|.|+|||++|.+
T Consensus        79 -aYG~~~~~~V~~v~~~--~f~~~~~~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~~v~~  150 (157)
T 3pr9_A           79 -AFGKRDPSKIKLIPLS--EFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD  150 (157)
T ss_dssp             -TTCCCCGGGEEEEEHH--HHHHTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEC
T ss_pred             -hcCCCChHhEEEcCHH--HCCcccCCcCCCcEEEecCCCeEEEEEcCCEEEEECCCccCCCeEEEEEEEEEEEe
Confidence             9999877653222110  0000 00122355322 11111           122234 9999999999999976

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.55  E-value=1.1e-14  Score=150.29  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD  368 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~  368 (945)
                      +++|+.|+|||++++  .||++||+|+.+ +|++|.+|.+++|||||++|.+|++||+++|+|||+.  |||..++.+.+
T Consensus         3 i~~gd~V~v~Y~g~~--~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~--aYGe~~~~lV~   77 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRT--EDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND--AYGQYDENLVQ   77 (196)
T ss_dssp             CCSSCEEEEEEEEEE--TTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTT--TSSCCCTTTCE
T ss_pred             CCCCCEEEEEEEEEE--CCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHH--hcCCCChhhEE
Confidence            467899999999998  699999999753 8999999999999999999999999999999999999  99998776543


Q ss_pred             hhcccCCCCccccccccccccc----cc----------cc--ccccccC-CCCcEEEEEEEEeeeC
Q psy11265        369 AAKHSADGTEQSKRHCCGVQMH----TG----------YE--DLNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       369 i~~~g~~G~~~~~~~~~G~~m~----~G----------~~--~~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                      ..+..  ..+.......||++.    .|          ..  -++.+-| ++.+|.|+|||++|++
T Consensus        78 ~vp~~--~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~  141 (196)
T 2kfw_A           78 RVPKD--VFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIRE  141 (196)
T ss_dssp             EECGG--GCCCSSCCCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEEEECCCBC
T ss_pred             EEEHH--HCCCccCcccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeec
Confidence            33221  011011223454321    11          00  0111233 8999999999999987

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.55  E-value=3.7e-16  Score=175.57  Aligned_cols=96  Identities=27%  Similarity=0.400  Sum_probs=1.9

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      +.|..|+.|+|||+|++  .||++||+|+.+++|++|.+|.+++|+|||++|.+|++||+++|+|||++  |||..    
T Consensus        25 ~~~~~gd~V~v~Y~g~~--~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge~~~~~ip~~~--aYG~~----   96 (356)
T 3jxv_A           25 DTPEVGDEVEVHYTGTL--LDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPEL--AYGES----   96 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCEEEEEEEEEE--CCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCCEEEEEEChHH--hCCCC----
Confidence            57899999999999999  59999999999889999999999999999999999999999999999999  99972    


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCC
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESP  418 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p  418 (945)
                               |..                   ..||||++|+|+|||+++..+
T Consensus        97 ---------g~~-------------------~~Ip~~~~l~f~vel~~~~~~  120 (356)
T 3jxv_A           97 ---------GSP-------------------PTIPANATLQFDVELLSWTSV  120 (356)
T ss_dssp             -------------------------------------------------CCE
T ss_pred             ---------CCC-------------------CCcCCCCEEEEEeeEEeeecc
Confidence                     211                   249999999999999999774

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.55  E-value=1.9e-14  Score=156.65  Aligned_cols=95  Identities=20%  Similarity=0.300  Sum_probs=81.5

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccch---hhhHHHHHhcCCCCcEEEEEecCCccccCCccch
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFK---LEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSK  364 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~v---I~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~  364 (945)
                      .|..|+.|+|||+|++   ||++||+     +|++|.+|.|++   |+|||++|.+|++||+++|+|||++  +||..  
T Consensus       183 ~~~~gd~V~i~y~g~~---dG~~fd~-----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~--~yG~~--  250 (280)
T 1q1c_A          183 KPNEGAIVEVALEGYY---KDKLFDQ-----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSV--  250 (280)
T ss_dssp             CCCTTCEEEEEEEEEE---TTEEEEE-----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGG--TTTTT--
T ss_pred             cccCCceEEEEEEEEe---CCEEEec-----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhH--cCCcC--
Confidence            6889999999999998   8999997     489999999985   9999999999999999999999999  89972  


Q ss_pred             hhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeCCchhhhhhhc
Q psy11265        365 TLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQ  427 (945)
Q Consensus       365 ~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~p~~y~ke~w~  427 (945)
                                 |.+                  ...||||++|+|+|+|++|.+    .++.|+
T Consensus       251 -----------~~~------------------~~~IP~~~~l~f~V~L~~i~~----~~~~W~  280 (280)
T 1q1c_A          251 -----------GKE------------------KFQIPPNAELKYELHLKSFEK----AKESWE  280 (280)
T ss_dssp             -----------CBG------------------GGTBCTTCCEEEEEEEEEEEC----CCC---
T ss_pred             -----------CCc------------------cCccCCCCeEEEEEEEEEEeC----CCCCCC
Confidence                       211                  013999999999999999998    688996

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.55  E-value=1.5e-14  Score=143.66  Aligned_cols=123  Identities=15%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             CCCCCCEEEEEEEEEEecC-CCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        288 INSICLTVHFHFVTQLCDS-DNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~-dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      .+..|+.|+|||+|++  . ||++||+|+. ++|++|.+|.|++|+|||++|.+|++||++.|+|||++  |||..+..+
T Consensus         6 ~i~~gd~V~v~Y~g~~--~~dG~~fdss~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~--aYG~~~~~~   80 (151)
T 2kr7_A            6 LESIKQAALIEYEVRE--QGSSIVLDSNIS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEE--AYGVYESSY   80 (151)
T ss_dssp             CTTSCCEEEEEEEEEE--SSCSCEEEESTT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGG--TTCSSCSCE
T ss_pred             CCCCCCEEEEEEEEEE--CCCCCEEEeCCC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHH--HcCCCCcce
Confidence            4578999999999998  5 8999999975 48999999999999999999999999999999999999  999876654


Q ss_pred             HhhhcccCCCCccccccccccccc----cccc-------------ccccccC-CCCcEEEEEEEEeeeCC
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMH----TGYE-------------DLNELLK-KSQDLTFTIELLQVESP  418 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~----~G~~-------------~~~~~ip-p~s~L~FeVELl~v~~p  418 (945)
                      .+..+..  .. .......|+.+.    .|..             -++.+-| +|.+|.|+|||++++++
T Consensus        81 v~~v~~~--~f-~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~~v~~a  147 (151)
T 2kr7_A           81 LQEVPRD--QF-EGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREV  147 (151)
T ss_dssp             EEEEEGG--GG-TTSCCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEEEEEECC
T ss_pred             EEEEcHH--Hc-CCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEEEEeecC
Confidence            2222110  00 001122344321    1110             0112234 89999999999999873

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.55  E-value=7.2e-15  Score=155.03  Aligned_cols=121  Identities=13%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             CCCCEEEEEEEEEEecCCCcEEecCCCC-------------CcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCcc
Q psy11265        290 SICLTVHFHFVTQLCDSDNTILDDSRKL-------------GKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV  356 (945)
Q Consensus       290 ~~g~~V~VhY~g~l~~~dGtvfDsS~~~-------------g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~  356 (945)
                      ++|+.|+|||+|++   ||++||||+.+             ++|++|.+|.|++|+|||++|.+|++||++.|+|||++ 
T Consensus         3 ~~Gd~V~v~Y~g~l---dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~-   78 (231)
T 3prb_A            3 EKGKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK-   78 (231)
T ss_dssp             CTTCEEEEEEEEEE---TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGG-
T ss_pred             CCCCEEEEEEEEEE---CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHH-
Confidence            56899999999999   89999999753             48999999999999999999999999999999999999 


Q ss_pred             ccCCccchhhHhhhcccCCCCcc-ccccccccccc-ccccc-----------cccccC-CCCcEEEEEEEEeeeC
Q psy11265        357 SAYPFVSKTLRDAAKHSADGTEQ-SKRHCCGVQMH-TGYED-----------LNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       357 ~aYG~~~~~lr~i~~~g~~G~~~-~~~~~~G~~m~-~G~~~-----------~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                       |||..+..+.+..+..  ..+. ......||.+. .|...           ++.+-| +|.+|.|+|||+++.+
T Consensus        79 -AYGe~~~~lv~~vp~~--~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~e  150 (231)
T 3prb_A           79 -AFGKRDPSKIKLIPLS--EFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD  150 (231)
T ss_dssp             -TTCCCCGGGEEEEETH--HHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECC
T ss_pred             -hcCCCChHHEEecCHH--HCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEec
Confidence             9999877653322210  0000 00122354322 11111           122344 8999999999999988

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.53  E-value=2.3e-14  Score=145.00  Aligned_cols=123  Identities=15%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD  368 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~  368 (945)
                      +++|+.|+|||+|++  .||++||+|+. ++|++|.+|.+++|+|||++|.+|++||+++|+|||+.  |||..++.+.+
T Consensus         3 i~~gd~V~v~Y~g~~--~dG~~fdss~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~--aYG~~~~~~v~   77 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRT--EDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND--AYGQYDENLVQ   77 (171)
T ss_dssp             CCTTEEEEEEEEEEE--TTSCEEEECCS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTT--SSCCCCTTSEE
T ss_pred             CCCCCEEEEEEEEEE--CCCCEEeeccC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHH--hcCCCChhhEE
Confidence            467899999999998  69999999975 38999999999999999999999999999999999999  99998766532


Q ss_pred             hhcccCCCCccccccccccccc----ccc----------c--ccccccC-CCCcEEEEEEEEeeeCC
Q psy11265        369 AAKHSADGTEQSKRHCCGVQMH----TGY----------E--DLNELLK-KSQDLTFTIELLQVESP  418 (945)
Q Consensus       369 i~~~g~~G~~~~~~~~~G~~m~----~G~----------~--~~~~~ip-p~s~L~FeVELl~v~~p  418 (945)
                      ..+..  ..+.......||++.    .|.          .  -++.+-| +|.+|.|+|||++++++
T Consensus        78 ~v~~~--~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~~a  142 (171)
T 2k8i_A           78 RVPKD--VFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA  142 (171)
T ss_dssp             EEEGG--GGTTSSCCCTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEEEEEC
T ss_pred             EeeHH--HCCcccCccCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeccC
Confidence            22211  000011223454322    121          0  0111123 89999999999999873

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.53  E-value=2.5e-15  Score=149.20  Aligned_cols=123  Identities=18%  Similarity=0.278  Sum_probs=88.6

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCC------------CC-cCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCc
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRK------------LG-KPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSL  355 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~------------~g-~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~  355 (945)
                      +++|+.|+|||+|++  .||++||+|+.            ++ +|++|.+|.|++|+|||++|.+|++||+++|+|||++
T Consensus         2 i~~gd~V~v~Y~g~~--~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~   79 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKL--ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECC--TTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             CCCCCEEEEEEEEEE--CCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHH
Confidence            467999999999998  69999999974            34 7999999999999999999999999999999999999


Q ss_pred             cccCCccchhhHhhhccc-CCCCccccccccccccc-ccccc-----------cccccC-CCCcEEEEEEEEeeeC
Q psy11265        356 VSAYPFVSKTLRDAAKHS-ADGTEQSKRHCCGVQMH-TGYED-----------LNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       356 ~~aYG~~~~~lr~i~~~g-~~G~~~~~~~~~G~~m~-~G~~~-----------~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                        |||..++.+.+..+.. ..+.  ......||.+. .+...           ++.+-| +|.+|.|+|||+++.+
T Consensus        80 --aYG~~~~~~v~~v~~~~f~~~--~~~~~~G~~~~~~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~vev~~v~~  151 (151)
T 1ix5_A           80 --AYGNRNEMLIQKIPRDAFKEA--DFEPEEGMVILAEGIPATITEVTDNEVTLDFNHELAGKDLVFTIKIIEVVE  151 (151)
T ss_dssp             --SSCSCCSTTBCCEETHHHHTS--TTCCCTTEEEESSSCEEEEEEEETTEEEEECCCSSTTCCEEEECCBCCCBC
T ss_pred             --HCCCCCccEEEEEEHHHcCcc--CCcccccCEEEECCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEEeC
Confidence              9998776542221110 0000  01123354321 11110           122234 8999999999998853

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.47  E-value=6.4e-14  Score=132.51  Aligned_cols=83  Identities=18%  Similarity=0.205  Sum_probs=73.1

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEec-CCccccCCccchhh
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCD-KSLVSAYPFVSKTL  366 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~-pe~~~aYG~~~~~l  366 (945)
                      .|..|+.|+|||+|++   ||++||+|+  ++|++|.+|.+++|+|||++|.+|++||+++|.|+ |+   .||..    
T Consensus        29 ~~~~gD~V~v~Y~g~~---dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~---~Yg~~----   96 (113)
T 1hxv_A           29 KLANGDIAIIDFTGIV---DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS---DYHVK----   96 (113)
T ss_dssp             CCCSSEEEEEEEEEEE---TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCT---TSSSS----
T ss_pred             CCCCCCEEEEEEEEEE---CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCch---hhCcC----
Confidence            6788999999999998   899999995  68999999999999999999999999999999996 44   36651    


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                                                       -.+|++|+|+|+|++|
T Consensus        97 ---------------------------------~~~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           97 ---------------------------------ELQSKPVTFEVVLKAI  112 (113)
T ss_dssp             ---------------------------------GGGSCCCEEEEEECCB
T ss_pred             ---------------------------------CCCCCEEEEEEEEEEE
Confidence                                             1257899999999987

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.43  E-value=2.7e-13  Score=135.50  Aligned_cols=117  Identities=16%  Similarity=0.159  Sum_probs=86.5

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD  368 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~  368 (945)
                      .+.|+.|+|||+|+ .  ||++||||+     ++|.+|.|++|+|||++|.+|++||+++|+|||+.  |||..+..+.+
T Consensus         3 i~~gd~V~v~Y~g~-~--dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~--aYG~~~~~lv~   72 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-V--EGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEK--AYGPHDPEGVQ   72 (158)
T ss_dssp             CCTTEEEEEEEEEE-E--TTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGG--TTCCCCGGGEE
T ss_pred             CCCCCEEEEEEEEE-E--CCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHH--HcCCCCcceEE
Confidence            45789999999999 4  899999986     99999999999999999999999999999999999  99998877643


Q ss_pred             hhcccCCCCccccccccccccc----ccccc-------------cccccC-CCCcEEEEEEEEeeeC
Q psy11265        369 AAKHSADGTEQSKRHCCGVQMH----TGYED-------------LNELLK-KSQDLTFTIELLQVES  417 (945)
Q Consensus       369 i~~~g~~G~~~~~~~~~G~~m~----~G~~~-------------~~~~ip-p~s~L~FeVELl~v~~  417 (945)
                      ..+..  ..+.......||.+.    .|..-             ++.+-| +|.+|.|+|||+++.+
T Consensus        73 ~v~~~--~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v~~  137 (158)
T 3cgm_A           73 VVPLS--AFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVRE  137 (158)
T ss_dssp             EEEGG--GSCTTSCCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEE
T ss_pred             EEEHH--HCCCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEEeec
Confidence            32221  011011223454321    12110             111233 8999999999999987

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.42  E-value=3.2e-14  Score=142.97  Aligned_cols=113  Identities=30%  Similarity=0.464  Sum_probs=97.9

Q ss_pred             EEEEecCCCcccccccccc--cccccccchhhhhhhhhhhccccc-cccc-----------------hhhhhcc------
Q psy11265        775 IGLFSYGSDNIKALFRRGK--AHMNVWNCEEAGADLKRVAALDST-MLGP-----------------VSSMLKQ------  828 (945)
Q Consensus       775 I~l~s~GsG~~~~~~~~~~--~~~~~~~~~~a~~~l~r~~idds~-~~~p-----------------l~~m~~~------  828 (945)
                      .-++.-|+|..+.+-.|.+  +|+..+..+.+.     ++.|.|+ ++.|                 |..|.+|      
T Consensus        14 ~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G-----~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~   88 (165)
T 2lkn_A           14 KRVIQEGRGELPDFQDGTKATFHYRTLHSDDEG-----TVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFL   88 (165)
T ss_dssp             CCEEECCSSCCCCCCTTCEEEEECEEECSSSSC-----CEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEEEE
T ss_pred             EEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCc-----cEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEEEE
Confidence            3478999999988877765  899999998888     8899988 7888                 8999999      


Q ss_pred             CCceeeeecccchHHHHHhhcccCCCCCCCCceeeeecc-----ccChhhHHHHhhcCcceEEEEe-----cCCCh
Q psy11265        829 LSSKLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQM-----HTGYEDLNELLKKSQDLTFTIE-----KPNDE  894 (945)
Q Consensus       829 ~~~~~~~~yp~vs~~~r~~~~~~~~~~~~~~~h~c~~~~-----~~gy~dl~~l~~~~~~l~f~~e-----kp~~~  894 (945)
                      |+.++.+.||+|++++|+++.++ .| .+++.|||||+.     ++||+|||+|+++|++|+|.||     +|++-
T Consensus        89 ipp~laYG~p~v~~~~r~~~~~~-~p-~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A           89 CDIKHVVLYPLVAKSLRNIAVGK-DP-LEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             CCHHHHSSHHHHHHHHTTGGGSS-TT-TTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred             ECHHHhcCCcchhhhhhhccccC-CC-ccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence            99999999999999999998875 33 447889999863     3999999999999999999985     88763

>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}

Probab=99.41  E-value=5.9e-14  Score=155.58  Aligned_cols=251  Identities=15%  Similarity=0.056  Sum_probs=156.9

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+--|.+++.|+|..+++.++|++..+.+++++....|.+++.+++++|+..+||+.                       
T Consensus         8 ~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi~~t   87 (323)
T 3il3_A            8 MNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERRIAAEDETVATMGFEAAKNAIEAAQINPQDIELIIVAT   87 (323)
T ss_dssp             CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEECCCTTCCHHHHHHHHHHHHHHHHCCCGGGCCEEEEEC
T ss_pred             ccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence            566799999999999999999999999999999999999999999999999999998                       


Q ss_pred             -----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-ccc
Q psy11265        549 -----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YND  606 (945)
Q Consensus       549 -----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~  606 (945)
                                       |++. +....+ .+|.++..   |+..|.       .++..+.....||+.+  .++.. ..|
T Consensus        88 ~~~~~~~p~~a~~v~~~lGl~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~vLvvg~e~~s~~~~~~d  157 (323)
T 3il3_A           88 TSHSHAYPSAACQVQGLLNIDDAISFDLAAACTGFVY---ALSVAD-------QFIRAGKVKKALVIGSDLNSRKLDETD  157 (323)
T ss_dssp             SCCSCSSSCHHHHHHHHTTCSSCEEEEECCGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEEEGGGSCCTTC
T ss_pred             CCCCCCCccHHHHHHHHhCCCCccEEEECCccHHHHH---HHHHHH-------HHHHCCCCCEEEEEEeeccccccCccc
Confidence                             2221 111111 38998884   666665       5566554444677665  44432 222


Q ss_pred             cccccCcccccchhhhH-------hhhcccCccccccccccc-ccc-----ccccccccccccchhchHHhhhhhhHHHh
Q psy11265        607 FISATDRSQYEGAEAFA-------HIKNLEDTYFNRDIEQYF-MSH-----NLYRTRLAYNDFISATDRTEYEGAEAFAH  673 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l-------~i~~~~~~~~s~d~~Df~-Rp~-----~~~~~~~~~g~~s~~~y~~~~~~~~a~~~  673 (945)
                        +......|+||.|++       .|.....++.. +..|.. .|.     ........+|......+.+.+.  .+++.
T Consensus       158 --~~~~~lfGDGA~A~vl~~~~~~~i~~~~~~s~g-~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~i~~  232 (323)
T 3il3_A          158 --RSTVVLFGDGAGAVILEASEQEGIISTHLHASA-DKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELS--NVVEE  232 (323)
T ss_dssp             --TTTTTTBCEEEEEEEEEEESSCCEEEEEEEECC-CCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHH--HHHHH
T ss_pred             --cccccccccceEEEEEEEcCCCCeEEEEEEEcC-CCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHH--HHHHH
Confidence              112234688888877       12211111000 011221 120     0001122345544444555443  24554


Q ss_pred             hhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhH
Q psy11265        674 IKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSL  753 (945)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSl  753 (945)
                      +  +.......+..|+|++|++..++.....+.+                 .++.    .|+...  + ++.||+++||+
T Consensus       233 ~--l~~~gl~~~did~~v~Hq~~~~i~~~~~~~l-----------------gl~~----ek~~~~--l-~~~GNt~sasi  286 (323)
T 3il3_A          233 T--LLANNLDKKDLDWLVPHQANLRIITATAKKL-----------------EMDM----SQVVVT--L-DKYANNSAATV  286 (323)
T ss_dssp             H--HHTTTCCTTTCCEEEECCSCHHHHHHHHHHT-----------------TCCG----GGBCCC--H-HHHCBCGGGHH
T ss_pred             H--HHHcCCCHHHCCEEEEcCCCHHHHHHHHHHc-----------------CcCH----HHhhcc--H-hhcCchHHHHH
Confidence            4  1222334455678999999976654333333                 1221    233322  2 68899999999


Q ss_pred             HHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        754 YGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       754 yl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +++|..++++...+  +| ++|++++||.|..-
T Consensus       287 ~~~L~~~~~~g~~~--~G-d~vll~~~G~G~t~  316 (323)
T 3il3_A          287 PVALDEAIRDGRIQ--RG-QLLLLEAFGGGWTW  316 (323)
T ss_dssp             HHHHHHHHHTTSSC--TT-CEEEEEEEETTTEE
T ss_pred             HHHHHHHHHcCCCC--CC-CEEEEEEEehhhee
Confidence            99999999875433  89 99999999999753

>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}

Probab=99.30  E-value=5.8e-13  Score=147.87  Aligned_cols=251  Identities=13%  Similarity=0.055  Sum_probs=155.2

Q ss_pred             cccccccceeeccccccchhHhhhh-----cCcCcccccccccccccccCCCcchhhhhhhc------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKH-----DQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~-----~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------  548 (945)
                      |+++|.+++.|+|..+++.++|++.     .+.+.+++....|.+++.++.++|+...||+.                  
T Consensus        10 m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~~~~~~~~~~~la~~Aa~~al~~ag~~~~~Id~   89 (333)
T 4dfe_A           10 IYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYFAEPDVTTSDLAFIASQRAIEAADIDPQSIDL   89 (333)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred             cceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence            5899999999999999999999998     45556777788899999999999999999998                  


Q ss_pred             ----------------------cCc--chhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccc
Q psy11265        549 ----------------------LSI--QCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LAR  601 (945)
Q Consensus       549 ----------------------Lsl--~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ar  601 (945)
                                            |++  .+....+ .+|.++..   |+..|.       .++..+.....||+.+  +.+
T Consensus        90 vi~~t~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~vLvvg~e~~s~  159 (333)
T 4dfe_A           90 IIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAVCSGFAY---AVATAD-------SFIRSGQHRTALVIGAETFSR  159 (333)
T ss_dssp             EEEECSSCSSSBSCHHHHHHHHTTCCSCCEEEEEECGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEEEGGG
T ss_pred             EEEEeCCCCCCCCcHHHHHHHHhCCCCCCcEEEeCcccHHHHH---HHHHHH-------HHHHcCCCCEEEEEEeecccc
Confidence                                  333  2222222 48998884   666665       5566554444677665  444


Q ss_pred             cc-ccccccccCcccccchhhhH-------hhhcccCcccccccccccccccc--------ccccccccccchhchHHhh
Q psy11265        602 LA-YNDFISATDRSQYEGAEAFA-------HIKNLEDTYFNRDIEQYFMSHNL--------YRTRLAYNDFISATDRTEY  665 (945)
Q Consensus       602 y~-~~~~~~~~E~tqgaGAvA~l-------~i~~~~~~~~s~d~~Df~Rp~~~--------~~~~~~~g~~s~~~y~~~~  665 (945)
                      .. ..+  +......|+||+|++       .|.....++ ..+..|.++....        ......+|......+.+.+
T Consensus       160 ~~~~~d--~~~~~lfGDGA~A~vl~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  236 (333)
T 4dfe_A          160 ILDFKD--RTTCVLFGDGAGAVILQASDEPGVLASALHA-DGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVL  236 (333)
T ss_dssp             GCCTTC--TTTTTTBCEEEEEEEEEEESSCSEEEEEEEE-CGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHH
T ss_pred             ccCccc--ccceeeeccccEEEEEEEcCCCCeEEEEEEE-ccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHH
Confidence            32 222  112244688998877       121111110 0112344442100        0011234444333444444


Q ss_pred             hhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhcccc
Q psy11265        666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLI  745 (945)
Q Consensus       666 ~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~v  745 (945)
                      .  .+++.+  +.......+..|||++|++..++.....+.+                 .++.    .|+...  + ++.
T Consensus       237 ~--~~i~~~--l~~~gl~~~did~~~~Hq~~~~i~~~~~~~l-----------------gl~~----~~~~~~--l-~~~  288 (333)
T 4dfe_A          237 E--KVAVEA--LEKANLSAEQIDWLIPHQANIRIMQSTCRKL-----------------GLPQ----ERMIVT--V-GEH  288 (333)
T ss_dssp             H--HHHHHH--HHHTTCCGGGCSEEEECCSCHHHHHHHHHHT-----------------TCCG----GGBCCC--H-HHH
T ss_pred             H--HHHHHH--HHHcCCCHHHCCEEEEcCCCHHHHHHHHHHh-----------------CCCH----HHhhhh--H-Hhc
Confidence            3  244444  1222344455678999999876643333332                 1221    233332  2 679


Q ss_pred             CcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        746 GNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       746 GN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      ||+++||++++|..++++...+  +| ++|++++||.|..-
T Consensus       289 GNt~sasi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~t~  326 (333)
T 4dfe_A          289 GNTSAASIPLALDVAVRDGRIK--RG-QNVLIEGVGGGFTW  326 (333)
T ss_dssp             CBCGGGHHHHHHHHHHHTTCSC--TT-CEEEEEEEETTTEE
T ss_pred             CchHHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEchhhee
Confidence            9999999999999999875433  89 99999999999653

>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}

Probab=99.27  E-value=3.3e-13  Score=151.33  Aligned_cols=250  Identities=12%  Similarity=0.104  Sum_probs=152.3

Q ss_pred             cccccccceeeccccccchhHhhhhcCcC-cccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVS-AGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d-~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      .+++|.+++.|+|..+++.+++++..+.+ ++++....|.+++.++.++|+..+||+.                      
T Consensus        15 ~~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~agi~~~~Id~vi~~   94 (354)
T 4efi_A           15 QGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGLGWQADSIDALIFV   94 (354)
T ss_dssp             ESEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             cceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            47999999999999999999999987654 3778888999999999999999999988                      


Q ss_pred             ------------------cCcc--hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cc
Q psy11265        549 ------------------LSIQ--CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AY  604 (945)
Q Consensus       549 ------------------Lsl~--~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~  604 (945)
                                        |+++  +....+ .+|.++..   |+..|.       .++..+.....||+.+  .++. ..
T Consensus        95 t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~s~~~---al~~A~-------~~i~~g~~~~vLvvg~e~~s~~~~~  164 (354)
T 4efi_A           95 SQTPNYRLPATAFVLQAELDLPASCLALDINLGCSGYPQ---ALWLGM-------NLIQTGAAKRVLLAVGDTISKMIDP  164 (354)
T ss_dssp             CSSCSCSSSCHHHHHHHHTTCCTTSEEEEECCCTTHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECGGGGCCT
T ss_pred             eCCCCCCCCcHHHHHHHHcCcCCCccEEeeCcccHHHHH---HHHHHH-------HHHHCCCCCEEEEEEechhcccCCc
Confidence                              4442  222222 48998884   666565       5566554444687665  4443 22


Q ss_pred             cccccccCcccccchhhhH-------hhhcccCccccccccccccccc----cccc------------cccccccchhch
Q psy11265        605 NDFISATDRSQYEGAEAFA-------HIKNLEDTYFNRDIEQYFMSHN----LYRT------------RLAYNDFISATD  661 (945)
Q Consensus       605 ~~~~~~~E~tqgaGAvA~l-------~i~~~~~~~~s~d~~Df~Rp~~----~~~~------------~~~~g~~s~~~y  661 (945)
                      .|  +......|+||+|++       .+..+..++.+.....+++|..    ....            -..+|.   .+|
T Consensus       165 ~d--~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~---~v~  239 (354)
T 4efi_A          165 TD--RSTSLLFGDAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGG---EIF  239 (354)
T ss_dssp             TC--HHHHTTBCCEEEEEEEEECCSCCEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHH---HHH
T ss_pred             cc--cccccccccceeEEEEeecCCCCceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccH---HHH
Confidence            22  111245799999987       1211111222222222333310    0000            011121   122


Q ss_pred             ---HHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchh
Q psy11265        662 ---RTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPG  738 (945)
Q Consensus       662 ---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~ps  738 (945)
                         .+.+.  .+++.+  +.......+..|+|++|++..++.....+.+                 .++.    .|+...
T Consensus       240 ~~~~~~~~--~~i~~~--l~~~gl~~~did~~v~Hq~~~~i~~~~~~~L-----------------gl~~----ek~~~~  294 (354)
T 4efi_A          240 NFTLNAVP--KLVSRT--LDIAGRDKDSYDAFLFHQANLFMLKHLAKKA-----------------GLPA----ERVPVN  294 (354)
T ss_dssp             HHHHHHHH--HHHHHH--HHHHTCCGGGCSEEEECCCCHHHHHHHHHHT-----------------TCCG----GGSCCC
T ss_pred             HHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEeCCCCHHHHHHHHHHh-----------------CcCH----HHHHHH
Confidence               12221  233333  2222344455678999998877643333332                 1221    233322


Q ss_pred             hhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        739 LYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       739 l~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      +   ++.||+++||++++|..++++....  +| ++|++++||.|....
T Consensus       295 l---~~~GNt~sasi~~~L~~~~~~g~~~--~G-d~vll~~fG~G~t~~  337 (354)
T 4efi_A          295 I---GEYGNTSCASIPLLITTELKDRLKE--ET-LQLGMFGFGVGYSWA  337 (354)
T ss_dssp             H---HHHCBCGGGHHHHHHHHHSHHHHHH--SC-EEEEEEEEETTTEEE
T ss_pred             H---hhhCcHHHHHHHHHHHHHHHhCCCC--CC-CEEEEEEEchhhhhe
Confidence            2   8999999999999999999864222  89 999999999996544

>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}

Probab=99.27  E-value=8e-13  Score=147.43  Aligned_cols=258  Identities=16%  Similarity=0.054  Sum_probs=146.8

Q ss_pred             CCCccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-------------------
Q psy11265        488 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-------------------  548 (945)
Q Consensus       488 ~~~~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-------------------  548 (945)
                      .++|...-|.+++.|+|...++.+||++.-+.+.+++..-.|.+++.++.++|++.+||+.                   
T Consensus         8 ~~~~~~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~a~~~e~~~~la~~Aa~~aL~~ag~~~~dId~l   87 (350)
T 4ewp_A            8 HERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAV   87 (350)
T ss_dssp             CCCCSEEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEECCCSSCCHHHHHHHHHHHHHHHTTCCGGGCSEE
T ss_pred             ccCCCCCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence            4567777899999999999999999999888888777666788999999999999999998                   


Q ss_pred             ---------------------cCcchh-hHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc
Q psy11265        549 ---------------------LSIQCY-LGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA  603 (945)
Q Consensus       549 ---------------------Lsl~~~-~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~  603 (945)
                                           |+++.. .+.+ .+|.++.   .||..|.       +++..++..+.||+.+  ..++-
T Consensus        88 i~~t~t~~~~~P~~a~~v~~~LGl~~~~a~di~~~C~g~~---~aL~~A~-------~~i~~g~~~~~Lvv~~E~~s~~~  157 (350)
T 4ewp_A           88 IVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYC---YGVAQAD-------ALVRSGTARHVLVVGVERLSDVV  157 (350)
T ss_dssp             EEECSCCSCSSSCHHHHHHHHTTCTTSCEEEEECGGGHHH---HHHHHHH-------HHHHTTSCSEEEEEEEEEGGGGC
T ss_pred             EEEeccCCCCCCchHHHHHHHhCCCCceEEEeecchhhHH---HHHHHhh-------hhhhCCCccceeEeeeeeceecc
Confidence                                 333211 1111 3899988   4666666       6677665555788776  44332


Q ss_pred             -ccccccccCcccccchhhhH-------hhhccc---Cccc------------ccccccccccccccc-ccccccccc--
Q psy11265        604 -YNDFISATDRSQYEGAEAFA-------HIKNLE---DTYF------------NRDIEQYFMSHNLYR-TRLAYNDFI--  657 (945)
Q Consensus       604 -~~~~~~~~E~tqgaGAvA~l-------~i~~~~---~~~~------------s~d~~Df~Rp~~~~~-~~~~~g~~s--  657 (945)
                       ..+  +......|+||.|++       .+....   .|..            ..+..+++|...... ....++...  
T Consensus       158 d~~~--~~~~~lfgDGA~A~vl~~~~~~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (350)
T 4ewp_A          158 DPTD--RSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPT  235 (350)
T ss_dssp             CTTC--TTTGGGBCEEEEEEEEEEESSCCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCC
T ss_pred             cccc--cccccccccchheeeeecccCCCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccce
Confidence             121  122234577887766       111110   0100            011111222100000 000000000  


Q ss_pred             -----hhchHHhhh-hhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHH
Q psy11265        658 -----SATDRTEYE-GAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSF  731 (945)
Q Consensus       658 -----~~~y~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~  731 (945)
                           ..++.-+.. .+.+.+..  +.......+..|+|++|++..++.....+.+                 +++.   
T Consensus       236 ~~~~g~~v~~~a~~~~~~~i~~~--L~~~gl~~~did~~v~Hq~~~~i~~~~~~~L-----------------gl~~---  293 (350)
T 4ewp_A          236 LRQDGPSVFRWAVWSMAKVAREA--LDAAGVEPEDLAAFIPHQANMRIIDEFAKQL-----------------KLPE---  293 (350)
T ss_dssp             EEECHHHHHHHHHHTHHHHHHHH--HHHHTCCGGGEEEEEECCSCHHHHHHHHHHT-----------------TCCT---
T ss_pred             eEehhHHHHHHHHHhhhHHHHHH--HHhhcCChhHhceEEecCCCHHHHHHHHHHc-----------------CcCh---
Confidence                 001110000 00122222  1122333445567888877755533322222                 1111   


Q ss_pred             HhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        732 ERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       732 ~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                       .|+.+.. + ++.||+++||++++|..++++...  .+| ++|+|++||+|..
T Consensus       294 -~~~~~~~-l-~~~GNtssasi~~~L~~~~~~g~~--~~G-d~vll~~fG~G~t  341 (350)
T 4ewp_A          294 -SVVVARD-I-ADAGNTSAASIPLAMHRLLEENPE--LSG-GLALQIGFGAGLV  341 (350)
T ss_dssp             -TSEECCT-H-HHHCBCGGGHHHHHHHHHHHHCGG--GTT-SEEEEEEEETTTE
T ss_pred             -HhEEecc-c-ccccchHHHHHHHHHHHHHHhCCC--CCc-CEEEEEEEchhhE
Confidence             2222211 1 578999999999999999987542  389 9999999999954

>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A

Probab=99.26  E-value=7.3e-13  Score=147.85  Aligned_cols=253  Identities=12%  Similarity=0.054  Sum_probs=153.9

Q ss_pred             cccccccceeeccccccchhHhhhhc-------CcCcccccccccccccccCCCcchhhhhhhc----------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHD-------QVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~-------g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------  548 (945)
                      .+|+|.+++.|+|..+++.++|++..       +.+++++....|.+++.+++++|+..+||+.                
T Consensus        11 ~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~al~~ag~~~~~I   90 (345)
T 3s21_A           11 QNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKI   90 (345)
T ss_dssp             SSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEEECSSCCCHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred             cceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence            57999999999999999999998863       5678888899999999999999999999988                


Q ss_pred             ------------------------cCcc--hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--c
Q psy11265        549 ------------------------LSIQ--CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--L  599 (945)
Q Consensus       549 ------------------------Lsl~--~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~  599 (945)
                                              |+++  +....+ .+|.++..   |+..|.       .++..+.....||+.+  .
T Consensus        91 d~vi~~t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~s~~~---al~~A~-------~~i~~g~~~~vLvvg~e~~  160 (345)
T 3s21_A           91 GLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANACLAFIN---GMDIAA-------RMLERGEIDYALVVDGETA  160 (345)
T ss_dssp             CEEEECCSCCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHH---HHHHHH-------HHHHHTSCSEEEEEEEECC
T ss_pred             CEEEEEeCCCCCCCChHHHHHHHHhCCCCCceEEeECCcCHHHHH---HHHHHH-------HHHHCCCCCEEEEEEEccc
Confidence                                    3332  111122 38988884   666565       5565554444677655  4


Q ss_pred             ccccccc---ccc-----------ccCcccccchhhhH--hh------hcccCcc--ccccccccccccccccccccccc
Q psy11265        600 ARLAYND---FIS-----------ATDRSQYEGAEAFA--HI------KNLEDTY--FNRDIEQYFMSHNLYRTRLAYND  655 (945)
Q Consensus       600 ary~~~~---~~~-----------~~E~tqgaGAvA~l--~i------~~~~~~~--~s~d~~Df~Rp~~~~~~~~~~g~  655 (945)
                      .+.-..+   +..           ......|+||+|++  .-      ..+....  ...+..|++|+.  ......+|+
T Consensus       161 s~~~~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~g~  238 (345)
T 3s21_A          161 NLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGN--LDRMVTDTR  238 (345)
T ss_dssp             HHHHHHHHHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECGGGTTC-------------CH
T ss_pred             chhhccccccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCcchhhhcccc--CcceEEcHH
Confidence            4321100   000           11346789999987  11      1121111  112344555551  111233454


Q ss_pred             cchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhh
Q psy11265        656 FISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLT  735 (945)
Q Consensus       656 ~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv  735 (945)
                      .....+.+.+.  .+++.+  +.......+..|+|++|++..++.....+.+                 .++.    .|+
T Consensus       239 ~v~~~~~~~~~--~~i~~~--l~~~gl~~~did~~v~Hq~~~~i~~~~~~~l-----------------gl~~----ek~  293 (345)
T 3s21_A          239 LLLIEGIKLAQ--KTFVAA--KQVLGWAVEELDQFVIHQVSRPHTAAFVKSF-----------------GIDP----AKV  293 (345)
T ss_dssp             HHHHHHHHHHH--HHHHHH--HHHHCCCGGGCSEEEECCSCHHHHHHHHHHH-----------------TCCG----GGB
T ss_pred             HHHHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEeCCCCHHHHHHHHHHc-----------------CcCH----HHc
Confidence            44444444443  244444  1122344455678999998876643333332                 1221    233


Q ss_pred             chhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        736 KPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       736 ~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      ...  + .+.||+++||++++|..++++....  +| ++|+|++||.|....
T Consensus       294 ~~~--l-~~~GNt~sasi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~t~~  339 (345)
T 3s21_A          294 MTI--F-GEHGNIGPASVPIVLSKLKELGRLK--KG-DRIALLGIGSGLNCS  339 (345)
T ss_dssp             CCC--H-HHHCBCGGGHHHHHHHHHHHHTCCC--TT-CEEEEEEEETTTEEE
T ss_pred             eee--H-hhcCchHHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEChhhhhe
Confidence            322  2 6899999999999999999875323  89 999999999997654

>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*

Probab=99.25  E-value=1.2e-12  Score=147.14  Aligned_cols=256  Identities=13%  Similarity=0.062  Sum_probs=153.7

Q ss_pred             CCCccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-------------------
Q psy11265        488 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-------------------  548 (945)
Q Consensus       488 ~~~~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-------------------  548 (945)
                      ...+.+++|.+++.|+|..+++.++|++..+.+++++....|.+++.++.++|+..+||+.                   
T Consensus        20 ~~~~~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~agl~~~dId~v   99 (359)
T 3h78_A           20 LYFQGNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIEAAGLLPEDIDLL   99 (359)
T ss_dssp             ----CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEEECCTTCCTHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             cCCCCCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEE
Confidence            3445789999999999999999999999988888888889999999999999999999998                   


Q ss_pred             ---------------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc
Q psy11265        549 ---------------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA  603 (945)
Q Consensus       549 ---------------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~  603 (945)
                                           |++. +....+ .+|.++..   |+..|.       .++..+.....||+.+  +++..
T Consensus       100 i~~t~~~~~~~p~~a~~v~~~lGl~~~~~~~v~~aC~s~~~---Al~~A~-------~~i~sG~~~~vLvvg~e~~S~~~  169 (359)
T 3h78_A          100 LVNTLSPDHHDPSQACLIQPLLGLRHIPVLDIRAQASGLLY---GLQMAR-------GQILAGLARHVLVVCGEVLSKRM  169 (359)
T ss_dssp             EEECSSCSSSBSCHHHHHHHHHTCCSCCEEEEECGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEEECGGGC
T ss_pred             EEEeCCCCCCCCcHHHHHHHHcCCCCCcEEEECCHhHHHHH---HHHHHH-------HHHHCCCcCEEEEEEEchhcccC
Confidence                                 2221 011111 38988884   666555       5555554444677665  55532


Q ss_pred             -ccccccccCcccccchhhhH--h-------hhcccC---ccccccccccccccc--cc-----------cccccccccc
Q psy11265        604 -YNDFISATDRSQYEGAEAFA--H-------IKNLED---TYFNRDIEQYFMSHN--LY-----------RTRLAYNDFI  657 (945)
Q Consensus       604 -~~~~~~~~E~tqgaGAvA~l--~-------i~~~~~---~~~s~d~~Df~Rp~~--~~-----------~~~~~~g~~s  657 (945)
                       ..|-.+..-...|+||+|++  .       |.....   +.+ .|...+++|..  ..           .....+|...
T Consensus       170 ~~~d~~~~t~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v  248 (359)
T 3h78_A          170 DCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNY-FDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPM  248 (359)
T ss_dssp             CCSTTTHHHHTTBCEEEEEEEEECCSCSSSEEEEEEEEECGGG-GGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHH
T ss_pred             CcccccccccceecceeEEEEEEecCCCCCceEEEEEEEccCc-cceEEeCCCCCccCCccccccccccCCceEeccHHH
Confidence             11100001123689999987  1       111111   221 12222221100  00           0111233333


Q ss_pred             hhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhch
Q psy11265        658 SATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKP  737 (945)
Q Consensus       658 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~p  737 (945)
                      ...+.+.+.  .+++.+  +.......+..|+|++|++..++.....+.+                 .++.    .|+..
T Consensus       249 ~~~~~~~~~--~~i~~~--L~~~gl~~~did~~v~Hq~n~~i~~~~~~~l-----------------gl~~----ek~~~  303 (359)
T 3h78_A          249 FEHASQTLV--RIAGEM--LAAHELTLDDIDHVICHQPNLRILDAVQEQL-----------------GIPQ----HKFAV  303 (359)
T ss_dssp             HHHHHHHHH--HHHHHH--HHHTTCCGGGCSEEEECCSCHHHHHHHHHHH-----------------TCCG----GGBCC
T ss_pred             HHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHh-----------------CcCH----HHhhh
Confidence            333333333  244443  2222344455678999999977654333333                 1221    23333


Q ss_pred             hhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        738 GLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       738 sl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .  + ++.||+++||++++|..++++.  .  +| ++|+|++||.|....
T Consensus       304 ~--l-~~~GNt~sAsi~l~L~~~~~~l--~--~G-d~vll~~fG~G~t~~  345 (359)
T 3h78_A          304 T--V-DRLGNMASASTPVTLAMFWPDI--Q--PG-QRVLVLTYGSGATWG  345 (359)
T ss_dssp             C--H-HHHCBCGGGHHHHHHHHHGGGS--C--TT-CEEEEEEEETTTEEE
T ss_pred             h--h-hcccchHHHHHHHHHHHHHHhC--C--CC-CEEEEEEEchhhhhe
Confidence            2  2 6889999999999999999872  2  89 999999999997654

>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A

Probab=99.13  E-value=8.6e-12  Score=140.45  Aligned_cols=253  Identities=16%  Similarity=0.111  Sum_probs=147.7

Q ss_pred             ccccccccceeeccccccchhHhhhhc-CcCcccccccccccccccCCCcchhhhhhhc---------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHD-QVSAGKYTIGLGQAKMGFCSDLEDINSICLT---------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~-g~d~gKy~~Glgq~~msv~~~~EDivTma~~---------------------  548 (945)
                      .++++|.+++.|+|..+++.+++++.. +.+.+++....|.+++.++.++|+..+||+.                     
T Consensus        28 ~~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi~  107 (365)
T 3gwa_A           28 PPRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRIAAPRETAADLAYEAARKLFAQGAVGADQVDFVIL  107 (365)
T ss_dssp             -CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHTTSCCGGGCCEEEE
T ss_pred             eccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence            468999999999999999999999987 6677888888999999999999999999988                     


Q ss_pred             -------------------cCcc--hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-c
Q psy11265        549 -------------------LSIQ--CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-A  603 (945)
Q Consensus       549 -------------------Lsl~--~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~  603 (945)
                                         |++.  +....+ .+|.++..   |+..|.       .++..+.....||+.+  ..+. .
T Consensus       108 ~t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~~C~s~~~---Al~~A~-------~~i~~g~~~~vLvvg~e~~s~~~~  177 (365)
T 3gwa_A          108 CTQAPDYVLPTSACMLQHRLGIPTHAGALDVNLGCSGYVY---GLSLAK-------GLVETGAARCVLLLTADTYSKYLH  177 (365)
T ss_dssp             EESSCSCSBSCHHHHHHHHTTCCTTSEEEEEECSTTHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECGGGGSC
T ss_pred             EeCCCCCCCCcHHHHHHHHcCCCCCceEEEecccChHHHH---HHHHHH-------HHHHcCCCCEEEEEEEchhhccCC
Confidence                               3333  111112 48988884   666565       5566554444677665  4443 2


Q ss_pred             ccccccccCcccccchhhhH-----h----hhcccCcccccccccccccccccccc----------cccc-----ccc--
Q psy11265        604 YNDFISATDRSQYEGAEAFA-----H----IKNLEDTYFNRDIEQYFMSHNLYRTR----------LAYN-----DFI--  657 (945)
Q Consensus       604 ~~~~~~~~E~tqgaGAvA~l-----~----i~~~~~~~~s~d~~Df~Rp~~~~~~~----------~~~g-----~~s--  657 (945)
                      ..|  +......|+||+|++     .    |..+.-++.+........|....+.+          ..++     .+.  
T Consensus       178 ~~d--r~~~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m  255 (365)
T 3gwa_A          178 PLD--KSVRTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYM  255 (365)
T ss_dssp             TTC--HHHHTTBCCEEEEEEEEEECSSSCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEE
T ss_pred             ccc--ccccccccceeEEEEEEecCCCCCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEe
Confidence            222  112235799999987     1    11111011111000111110000000          0011     010  


Q ss_pred             --hhch---HHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHH
Q psy11265        658 --SATD---RTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFE  732 (945)
Q Consensus       658 --~~~y---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~  732 (945)
                        ..+|   .+.+.  .+.+..  +.......+..|+|++|++..++.....+.+                 .++.    
T Consensus       256 ~g~~v~~~~~~~~~--~~i~~~--L~~~gl~~~did~~v~Hq~n~~i~~~~~~~L-----------------gl~~----  310 (365)
T 3gwa_A          256 NGAEVMAFSLAEVP--RAADRL--LALAGEPRENIDCFVLHQANRFMLDALRKKM-----------------KIPE----  310 (365)
T ss_dssp             CHHHHHHHHHHHHH--HHHHHH--HHHHTCCGGGCSEEEECCCCHHHHHHHHHHH-----------------TCCG----
T ss_pred             ccHHHHHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEEcCCCHHHHHHHHHHh-----------------CCCH----
Confidence              1111   11111  122222  1222333455577889988766543333322                 2221    


Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      .|+...  + .+.||+.+||++++|..++++...+  +| ++|+|++||.|..-
T Consensus       311 ek~~~~--l-~~~GNtssAsipl~L~~~~~~g~~~--~G-d~vll~~fG~G~t~  358 (365)
T 3gwa_A          311 HKFPVL--M-EHCGNTVSSTLPLALETMRANGTLA--RG-MRLMLLGFGVGYSW  358 (365)
T ss_dssp             GGSCCC--C-TTTCBCGGGHHHHHHHHHHHTTCCC--TT-CEEEEEEEETTTEE
T ss_pred             HHHHHH--H-hcccchHHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEehhhee
Confidence            233322  2 7899999999999999999875433  89 99999999999653

>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}

Probab=99.11  E-value=1.7e-10  Score=127.84  Aligned_cols=225  Identities=13%  Similarity=0.113  Sum_probs=150.1

Q ss_pred             CCCCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccc
Q psy11265          3 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQL   82 (945)
Q Consensus         3 ~~~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l   82 (945)
                      |.--||--|.++..|+|+.+|+.+||++..+.+++++....|+.++.++.+.|+...||+.|++++|++.+++|++|+.|
T Consensus         4 ~~~~~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~v   83 (323)
T 3il3_A            4 HHHHMNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERRIAAEDETVATMGFEAAKNAIEAAQINPQDIELI   83 (323)
T ss_dssp             ----CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEECCCTTCCHHHHHHHHHHHHHHHHCCCGGGCCEE
T ss_pred             ccccccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence            44568889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee
Q psy11265         83 LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV  162 (945)
Q Consensus        83 ~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV  162 (945)
                       +++|..-   ..+  ...........++.. ++        .++++..+|.|++.| |..|..+|+  +  ++...+||
T Consensus        84 -i~~t~~~---~~~--~p~~a~~v~~~lGl~-~~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~--g~~~~vLv  143 (323)
T 3il3_A           84 -IVATTSH---SHA--YPSAACQVQGLLNID-DA--------ISFDLAAACTGFVYA-LSVADQFIR--A--GKVKKALV  143 (323)
T ss_dssp             -EEECSCC---SCS--SSCHHHHHHHHTTCS-SC--------EEEEECCGGGHHHHH-HHHHHHHHH--T--TSCSEEEE
T ss_pred             -EEEeCCC---CCC--CccHHHHHHHHhCCC-Cc--------cEEEECCccHHHHHH-HHHHHHHHH--C--CCCCEEEE
Confidence             8888710   000  010111122334432 33        567888999999999 899999996  3  35678898


Q ss_pred             -ecccccccc-cCCCCCCC-----------------cceeeccccccccccccCcccCCCC-----CCc-cccCcc----
Q psy11265        163 -TKLSDVQDR-LDARRPVP-----------------PAEFTRILAAKKENLHKYPFRSETP-----PGE-YLFDGS----  213 (945)
Q Consensus       163 -asdia~y~~-~~~~~~t~-----------------P~~~~~~~~~~~~~~~~~Df~rP~~-----~~~-~~vdG~----  213 (945)
                       ++|...... .+.+ .+.                 |.++...........+.  .+.|..     ... ...+|.    
T Consensus       144 vg~e~~s~~~~~~d~-~~~~lfGDGA~A~vl~~~~~~~i~~~~~~s~g~~~~~--~~~~g~~~~~~~~~~~~~~g~~v~~  220 (323)
T 3il3_A          144 IGSDLNSRKLDETDR-STVVLFGDGAGAVILEASEQEGIISTHLHASADKNNA--LVLAQPERGIEKSGYIEMQGNETFK  220 (323)
T ss_dssp             EEEEEGGGSCCTTCT-TTTTTBCEEEEEEEEEEESSCCEEEEEEEECCCCSCS--EECCCCCTTCSSCSCCEECHHHHHH
T ss_pred             EEeeccccccCcccc-ccccccccceEEEEEEEcCCCCeEEEEEEEcCCCcce--EEECCCCCCCCCCCcEEEcCHHHHH
Confidence             888753211 1111 111                 12221111110000111  112311     111 135675    


Q ss_pred             hhHHHHHHHHHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        214 YYLESIDDFHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       214 ~YL~~ld~~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .+++.+.+++++..++.+-        ..++++ +++|....++.+
T Consensus       221 ~~~~~~~~~i~~~l~~~gl--------~~~did~~v~Hq~~~~i~~  258 (323)
T 3il3_A          221 LAVRELSNVVEETLLANNL--------DKKDLDWLVPHQANLRIIT  258 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTTC--------CTTTCCEEEECCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC--------CHHHCCEEEEcCCCHHHHH
Confidence            6788888999998887643        345666 788988876643

>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}

Probab=99.07  E-value=8.1e-11  Score=131.23  Aligned_cols=141  Identities=14%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             CCCCCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcc
Q psy11265          2 SHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQ   81 (945)
Q Consensus         2 ~~~~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~   81 (945)
                      .|++|...-|.++..|+|+..|+.+||++.-+.+.++...-.|-++..++.+.|+..+||+.|++++|++.+++|++|+.
T Consensus         7 ~~~~~~~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~a~~~e~~~~la~~Aa~~aL~~ag~~~~dId~   86 (350)
T 4ewp_A            7 QHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDA   86 (350)
T ss_dssp             CCCCCSEEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEECCCSSCCHHHHHHHHHHHHHHHTTCCGGGCSE
T ss_pred             cccCCCCCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence            47899999999999999999999999999988888776555677777899999999999999999999999999999999


Q ss_pred             cccccCCcccccccccccchhhhh-----hcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCC
Q psy11265         82 LLQVESPEEYEQESWQLTEAEKLA-----SIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVD  156 (945)
Q Consensus        82 l~~v~Te~~~~~s~wd~s~~d~sk-----~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~  156 (945)
                      | +++|.          +......     ....|+.. ++        .++++.++|.|++.| |..|..+++  +  ++
T Consensus        87 l-i~~t~----------t~~~~~P~~a~~v~~~LGl~-~~--------~a~di~~~C~g~~~a-L~~A~~~i~--~--g~  141 (350)
T 4ewp_A           87 V-IVSTV----------TFPHATPSAAALVAHEIGAT-PA--------PAYDVSAACAGYCYG-VAQADALVR--S--GT  141 (350)
T ss_dssp             E-EEECS----------CCSCSSSCHHHHHHHHTTCT-TS--------CEEEEECGGGHHHHH-HHHHHHHHH--T--TS
T ss_pred             E-EEEec----------cCCCCCCchHHHHHHHhCCC-Cc--------eEEEeecchhhHHHH-HHHhhhhhh--C--CC
Confidence            8 88888          3322212     22345443 22        357889999999999 888999986  3  46


Q ss_pred             Ccceee-ecccc
Q psy11265        157 TLKTLV-TKLSD  167 (945)
Q Consensus       157 ~~~~LV-asdia  167 (945)
                      .+++|| ++|..
T Consensus       142 ~~~~Lvv~~E~~  153 (350)
T 4ewp_A          142 ARHVLVVGVERL  153 (350)
T ss_dssp             CSEEEEEEEEEG
T ss_pred             ccceeEeeeeec
Confidence            789999 88875

>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*

Probab=99.03  E-value=4.6e-10  Score=126.18  Aligned_cols=143  Identities=15%  Similarity=0.078  Sum_probs=113.0

Q ss_pred             CCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         5 ~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      .+.+|+|.++..|+|+..|++++|++..+.++.++....|+.++.++.+.|+...||+.|++++|++.+++|++|+.| .
T Consensus        22 ~~~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~agl~~~dId~v-i  100 (359)
T 3h78_A           22 FQGNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIEAAGLLPEDIDLL-L  100 (359)
T ss_dssp             --CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEEECCTTCCTHHHHHHHHHHHHHHTTCCGGGCCEE-E
T ss_pred             CCCCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEE-E
Confidence            457899999999999999999999999999999998889999999999999999999999999999999999999988 8


Q ss_pred             ccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-e
Q psy11265         85 VESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-T  163 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-a  163 (945)
                      ++|..-   ..+..+  ........|+.. ++        .++++..+|.|++.| |..|..+|+  +  ++...+|| +
T Consensus       101 ~~t~~~---~~~~p~--~a~~v~~~lGl~-~~--------~~~~v~~aC~s~~~A-l~~A~~~i~--s--G~~~~vLvvg  161 (359)
T 3h78_A          101 VNTLSP---DHHDPS--QACLIQPLLGLR-HI--------PVLDIRAQASGLLYG-LQMARGQIL--A--GLARHVLVVC  161 (359)
T ss_dssp             EECSSC---SSSBSC--HHHHHHHHHTCC-SC--------CEEEEECGGGHHHHH-HHHHHHHHH--T--TSCSEEEEEE
T ss_pred             EEeCCC---CCCCCc--HHHHHHHHcCCC-CC--------cEEEECCHhHHHHHH-HHHHHHHHH--C--CCcCEEEEEE
Confidence            887710   011011  111222334443 33        457788999999999 888899996  3  35678888 7


Q ss_pred             cccc
Q psy11265        164 KLSD  167 (945)
Q Consensus       164 sdia  167 (945)
                      +|.-
T Consensus       162 ~e~~  165 (359)
T 3h78_A          162 GEVL  165 (359)
T ss_dssp             EEEC
T ss_pred             Echh
Confidence            7763

>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}

Probab=98.95  E-value=1.3e-09  Score=120.91  Aligned_cols=222  Identities=13%  Similarity=0.095  Sum_probs=147.8

Q ss_pred             CcccceeeeeeecCCccccHHHHHhh-----cCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKH-----DQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIG   80 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~-----~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig   80 (945)
                      .|+|+|.+|..|+|+..|++++|++.     .+.+.+++....|..++.++.+.|+...||+.|++++|++.++++++|+
T Consensus         9 ~m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~~~~~~~~~~~la~~Aa~~al~~ag~~~~~Id   88 (333)
T 4dfe_A            9 TIYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYFAEPDVTTSDLAFIASQRAIEAADIDPQSID   88 (333)
T ss_dssp             CCEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCC
T ss_pred             ccceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence            46899999999999999999999998     4555678878889999999999999999999999999999999999999


Q ss_pred             ccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcce
Q psy11265         81 QLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKT  160 (945)
Q Consensus        81 ~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~  160 (945)
                      .| .++|..-   ..+.  ..........|+.+.++        .++++..+|.|++.| |..|..+|+  +  ++...+
T Consensus        89 ~v-i~~t~~~---~~~~--p~~a~~v~~~lgl~~~~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~--g~~~~v  149 (333)
T 4dfe_A           89 LI-IVATSTP---DFVF--PSTACLLQNKLGIRNHG--------AAFDVQAVCSGFAYA-VATADSFIR--S--GQHRTA  149 (333)
T ss_dssp             EE-EEECSSC---SSSB--SCHHHHHHHHTTCCSCC--------EEEEEECGGGHHHHH-HHHHHHHHH--T--TSCSEE
T ss_pred             EE-EEEeCCC---CCCC--CcHHHHHHHHhCCCCCC--------cEEEeCcccHHHHHH-HHHHHHHHH--c--CCCCEE
Confidence            88 8887710   0010  11111222344443334        457888999999999 899999996  3  356788


Q ss_pred             ee-eccccccc-ccCCCCCCC-----------------cceeeccccccccccccCcccCCCC---------CCccccCc
Q psy11265        161 LV-TKLSDVQD-RLDARRPVP-----------------PAEFTRILAAKKENLHKYPFRSETP---------PGEYLFDG  212 (945)
Q Consensus       161 LV-asdia~y~-~~~~~~~t~-----------------P~~~~~~~~~~~~~~~~~Df~rP~~---------~~~~~vdG  212 (945)
                      || ++|..... ..+.+. +.                 |.++......  . -...|.+++..         ......+|
T Consensus       150 Lvvg~e~~s~~~~~~d~~-~~~lfGDGA~A~vl~~~~~~~i~~~~~~~--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g  225 (333)
T 4dfe_A          150 LVIGAETFSRILDFKDRT-TCVLFGDGAGAVILQASDEPGVLASALHA--D-GSHSNILCTPGNVNGGVVSGSAFLHMDG  225 (333)
T ss_dssp             EEEEEEEGGGGCCTTCTT-TTTTBCEEEEEEEEEEESSCSEEEEEEEE--C-GGGGGGEEBCEEEETTEEEECCSCEECH
T ss_pred             EEEEeeccccccCccccc-ceeeeccccEEEEEEEcCCCCeEEEEEEE--c-cCCcCeEEECCCCCCcccccCcceeecc
Confidence            98 88764211 111111 11                 1111111110  0 11123332111         11123566


Q ss_pred             c----hhHHHHHHHHHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        213 S----YYLESIDDFHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       213 ~----~YL~~ld~~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                      .    .+.+.+.++.++..++.+-        ..++++ +++|....++.+
T Consensus       226 ~~v~~~~~~~~~~~i~~~l~~~gl--------~~~did~~~~Hq~~~~i~~  268 (333)
T 4dfe_A          226 QAVFKLAVNVLEKVAVEALEKANL--------SAEQIDWLIPHQANIRIMQ  268 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC--------CGGGCSEEEECCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC--------CHHHCCEEEEcCCCHHHHH
Confidence            4    6788888999998888643        345666 788988776643

>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*

Probab=98.95  E-value=2.7e-10  Score=127.95  Aligned_cols=249  Identities=15%  Similarity=0.070  Sum_probs=139.6

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcc--hhhhhhhc---------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLE--DINSICLT---------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~E--DivTma~~---------------------  548 (945)
                      .+|+|.+++.|+|...+..+++++.  ++........|.+++.+++..|  +..+||+.                     
T Consensus         4 ~~v~I~g~g~ylP~~~~~~~~~~~~--~~~~~~~~~tGi~~r~~a~~~e~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~   81 (357)
T 3s3l_A            4 ENLFVSGVAAWLPPLSTAQDAVMAG--LLDPARSKLRGIESVTVASDAEEDAPPRMAARAARAALGRGDVDPADVSLVLH   81 (357)
T ss_dssp             SSCEEEEEEEECCCEEEHHHHHHTT--SSCHHHHHHHCCCEEECCCSSGGGSHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred             CceEEEEEEEECCCCCCHHHHHHhc--CCcHHHHHHcCceEEEecCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence            5799999999999977666666643  4443445779999999999888  89999988                     


Q ss_pred             --c--------CcchhhHHH------------HHHHHhHHHHHHHHhCccccCCCcceeeecCCc--ceEEEec--cccc
Q psy11265        549 --L--------SIQCYLGAL------------DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPY--CKLVQKS--LARL  602 (945)
Q Consensus       549 --L--------sl~~~~~~l------------daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~--~kLV~as--~ary  602 (945)
                        -        +..+++...            .+|.++..   |+..|.       .++..+.-.  ..||+.+  ..+.
T Consensus        82 ~t~~~~~~d~~~~a~~v~~~lG~~~~~~~~v~~aC~~~~~---al~~A~-------~~i~sg~~~~~~vLvvg~e~~s~~  151 (357)
T 3s3l_A           82 SSLWFQGIDLWPAASYVAHEAVGRHVPAFGLAQRCNGGMG---AIELAG-------AYLGSGIGAGHAALLTTGDRFAGP  151 (357)
T ss_dssp             ECSSCCSSSSSCHHHHHHHHHTCSSSCEEEEECGGGHHHH---HHHHHH-------HHHHTTSSSSSEEEEEEEECCCTT
T ss_pred             EeccCCCcccccHHHHHHHHhCCCCCcEEEEcCccHHHHH---HHHHHH-------HHHHcCCCCCCEEEEEEEeccccc
Confidence              1        111222111            38888874   566555       556666544  5688665  5532


Q ss_pred             cccccccccCcccccchhhhH--------hhhcccCcccccccccccccccccccc---------ccccc--cch-----
Q psy11265        603 AYNDFISATDRSQYEGAEAFA--------HIKNLEDTYFNRDIEQYFMSHNLYRTR---------LAYND--FIS-----  658 (945)
Q Consensus       603 ~~~~~~~~~E~tqgaGAvA~l--------~i~~~~~~~~s~d~~Df~Rp~~~~~~~---------~~~g~--~s~-----  658 (945)
                      .+.+.........|+||+|++        .|.....++... ..|++|+.. ...+         ..+|.  |..     
T Consensus       152 ~~~~~~~~~~~lfGDGA~A~vl~~~~~~~~i~~~~~~s~g~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~  229 (357)
T 3s3l_A          152 RIDRWNSVDVTMYGDGAAALVLSTRDGFARVLSTATGVDNS-LEILARGDE-PFAPHPVEPSPVADLGTRTVRGAELADL  229 (357)
T ss_dssp             TCCTTTSSSSCCBCCEEEEEEEESSCCSEEEEEEEEEECGG-GGGGGTTTC-CCCSSCCSSCCCCCHHHHHHHHHHHHCC
T ss_pred             ccccccccCCcccccccEEEEEecCCCCCeEEEEEEEEccC-hhhhcccCC-CCCCCccCcCCccccccchhhhhcccch
Confidence            121110124566899999987        122211111111 234444310 0000         01111  100     


Q ss_pred             ---h-chHHhhhhhhHHHhhhhcccccCCcchHHHHHH-hCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHh
Q psy11265        659 ---A-TDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS-HNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFER  733 (945)
Q Consensus       659 ---~-~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~  733 (945)
                         . .+.+.+.  .+.+..  +.......+..|+|++ |++..+  .+++...|                .++.    .
T Consensus       230 ~~~~~~~~~~~~--~~i~~~--L~~~gl~~~did~~v~~hq~~~~--~~~~~~~l----------------gl~~----e  283 (357)
T 3s3l_A          230 PDLTHRYIDLLV--AAKTQA--LEDAGTAIEDIAHAVIPVSRRGT--GHELHDLL----------------GLPD----E  283 (357)
T ss_dssp             TTHHHHHHHHHH--HHHHHH--HHHTTCCGGGCSEEECCSCCCCS--SCCHHHHH----------------TSCG----G
T ss_pred             hhhHHHHHHHHH--HHHHHH--HHHcCCCHHHCCEEEecCcChHH--HHHHHHHc----------------CCCH----H
Confidence               0 1111111  122222  2222333445567776 766644  33333221                1221    1


Q ss_pred             hhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        734 LTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       734 kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      |+.  ..+.+++||+++||++++|..++++...+  +| ++|+|++||.|..
T Consensus       284 k~~--~~~~~~~GNt~aAsipl~L~~~~~~g~l~--~G-d~vll~~fG~G~t  330 (357)
T 3s3l_A          284 RTS--WAYGRTTGHVGAGDQYAGLAHLVENALVQ--PG-DRVLLFGGGAGYT  330 (357)
T ss_dssp             GBT--HHHHHHHCBCTTCHHHHHHHHHHHTTCCC--TT-CEEEEECCBTTTE
T ss_pred             HhH--HHhccccccchHhHHHHHHHHHHHcCCCC--CC-CEEEEEEEchhhh
Confidence            222  14557899999999999999999875433  89 9999999999954

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.95  E-value=9.2e-10  Score=126.64  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             ccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchh
Q psy11265        286 EDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKT  365 (945)
Q Consensus       286 ~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~  365 (945)
                      +..+..|+.|+|||+|+.   ||++||++.  ++|+.|.+|.|++||||+.+|.+|++||+..|.+++..  +||.    
T Consensus       155 ~~~~~~gD~V~i~y~g~~---dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~--~yg~----  223 (432)
T 1w26_A          155 DGAVEAEDRVTIDFTGSV---DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPE--EYHA----  223 (432)
T ss_dssp             SSCCCTTCEEEECEEEES---SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCT--TCSC----
T ss_pred             CCCCCCCCEEEEEEEEee---CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCch--hhCC----
Confidence            345789999999999995   899999986  68999999999999999999999999999999999988  8885    


Q ss_pred             hHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        366 LRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       366 lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                               .                        -.+|.+++|+|+|+++..
T Consensus       224 ---------~------------------------~lag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          224 ---------E------------------------NLKGKAAKFAINLKKVEE  242 (432)
T ss_dssp             ---------T------------------------TTSSCEEEEEEECCEECC
T ss_pred             ---------C------------------------CCCCceEEEEEEEEEEec
Confidence                     1                        125789999999999976

>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}

Probab=98.95  E-value=4.7e-10  Score=125.75  Aligned_cols=142  Identities=16%  Similarity=0.127  Sum_probs=112.0

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCC-cccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVS-AGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~-~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      ++|+|.++..|+|+..|+++||++..+.+ ++++....|.+++.++.+.|+...||+.|++++|++.+++|++|+.| .+
T Consensus        15 ~~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~agi~~~~Id~v-i~   93 (354)
T 4efi_A           15 QGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGLGWQADSIDAL-IF   93 (354)
T ss_dssp             ESEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-EE
T ss_pred             cceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EE
Confidence            36999999999999999999999987764 47888889999999999999999999999999999999999999988 88


Q ss_pred             cCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      +|..     .-.............|+.+.++        .++++.++|.|++.| |..|..+|+  +  ++.+.+|| ++
T Consensus        94 ~t~~-----~~~~~p~~a~~v~~~lGl~~~~--------~~~~v~~aC~s~~~a-l~~A~~~i~--~--g~~~~vLvvg~  155 (354)
T 4efi_A           94 VSQT-----PNYRLPATAFVLQAELDLPASC--------LALDINLGCSGYPQA-LWLGMNLIQ--T--GAAKRVLLAVG  155 (354)
T ss_dssp             ECSS-----CSCSSSCHHHHHHHHTTCCTTS--------EEEEECCCTTHHHHH-HHHHHHHHH--T--TSCSEEEEEEE
T ss_pred             EeCC-----CCCCCCcHHHHHHHHcCcCCCc--------cEEeeCcccHHHHHH-HHHHHHHHH--C--CCCCEEEEEEe
Confidence            8871     0000011111222345543334        567888999999999 999999996  3  35678898 88


Q ss_pred             ccc
Q psy11265        165 LSD  167 (945)
Q Consensus       165 dia  167 (945)
                      |..
T Consensus       156 e~~  158 (354)
T 4efi_A          156 DTI  158 (354)
T ss_dssp             ECG
T ss_pred             chh
Confidence            874

>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*

Probab=98.92  E-value=5.8e-10  Score=123.28  Aligned_cols=250  Identities=13%  Similarity=0.075  Sum_probs=143.4

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      +++++|.+++.|+|..+++.+++++..+.+.+++....|.+++.+++++| ..+||+.                      
T Consensus         2 ~~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~a~~~e-~~~La~~Aa~~aL~~ag~~~~~Id~li~~   80 (321)
T 3il6_A            2 KNYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRIVTQEN-TSDLCHQVAKQLLEKSGKQASEIDFILVA   80 (321)
T ss_dssp             CCEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEECCSSCC-HHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             CCcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEEECCCCC-HHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            46799999999999999999999998888888888889999999999988 9999988                      


Q ss_pred             ------------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-ccc
Q psy11265        549 ------------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYN  605 (945)
Q Consensus       549 ------------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~  605 (945)
                                        |++. +....+ .+|.++..   |+..|.       .++..+.....||+.+  ..+. ...
T Consensus        81 t~~~~~~~p~~a~~v~~~lGl~~~~~~~v~~aC~s~~~---al~~A~-------~~i~~g~~~~vLvvg~e~~s~~~~~~  150 (321)
T 3il6_A           81 TVTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVY---ALSMAE-------KLVLSGRYQTGLVIGGETFSKMLDWT  150 (321)
T ss_dssp             CSSCSCSSSCHHHHHHHHTTCTTCEEEEECCGGGHHHH---HHHHHH-------HHHHTSSCCCEEEEEEECGGGGSCTT
T ss_pred             eCCCCcCCCcHHHHHHHHcCCCCceEEEeCcccHHHHH---HHHHHH-------HHHHCCCCCEEEEEEEccccccCCcc
Confidence                              3332 111111 48998884   666665       5566554445687665  5442 222


Q ss_pred             ccccccCcccccchhhhH-------hhhcccCccccccccccc-ccccccccccc-----ccccc----hhchHHhhhhh
Q psy11265        606 DFISATDRSQYEGAEAFA-------HIKNLEDTYFNRDIEQYF-MSHNLYRTRLA-----YNDFI----SATDRTEYEGA  668 (945)
Q Consensus       606 ~~~~~~E~tqgaGAvA~l-------~i~~~~~~~~s~d~~Df~-Rp~~~~~~~~~-----~g~~s----~~~y~~~~~~~  668 (945)
                      |  +......|+||+|++       .|.....++.. +..|.+ .|....+.+.-     ...+.    ..+|.-+    
T Consensus       151 d--r~~~~lfGDGA~A~vl~~~~~~~i~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~----  223 (321)
T 3il6_A          151 D--RSTAVLFGDGAAGVLIEAAETPHFLNEKLQADG-QRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFA----  223 (321)
T ss_dssp             C--TTTGGGBCCEEEEEEEEEESSCCEEEEEEEECG-GGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHH----
T ss_pred             c--cccceeeccccEEEEEEEcCCCCEEEEEEEEcC-CCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHH----
Confidence            2  112245699999987       12111111111 112222 22100000000     01111    1111111    


Q ss_pred             hHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcc
Q psy11265        669 EAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNM  748 (945)
Q Consensus       669 ~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~  748 (945)
                        .+...+.-..-...+..|+|+.|++..++-....+.+                 .++.    .|+..   .-++.||+
T Consensus       224 --~~~~~~~i~~~l~~~did~~v~Hq~~~~i~~~~~~~l-----------------gl~~----ek~~~---~l~~~GNt  277 (321)
T 3il6_A          224 --IKDVSQNILSLVTDETVDYLLLHQANVRIIDKIARKT-----------------KISR----EKFLT---NMDKYGNT  277 (321)
T ss_dssp             --HHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHH-----------------TCCG----GGBCC---CGGGTCBC
T ss_pred             --HHHHHHHHHHHcCcccCCEEEEcCCCHHHHHHHHHHc-----------------CcCH----HHhhh---hHhhcccH
Confidence              1111010000111234467888988765533222222                 2221    23322   23899999


Q ss_pred             cchhHHHHHHHHhccCCccccCCC-cEEEEEecCCCccc
Q psy11265        749 YTPSLYGCLVSLLIQTPWERLQGM-SRIGLFSYGSDNIK  786 (945)
Q Consensus       749 YTaSlyl~L~SlL~~~~~~~L~G~-~rI~l~s~GsG~~~  786 (945)
                      .+||+++.|..++++...+  +|- ++|++++||.|..-
T Consensus       278 ~sasi~~~L~~~~~~g~~~--~G~~d~vll~~fG~G~t~  314 (321)
T 3il6_A          278 SAASIPILLDEAVENGTLI--LGSQQRVVLTGFGGGLTW  314 (321)
T ss_dssp             GGGHHHHHHHHHHHTTSSC--TTSCCEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHHhCCCC--CCCCCEEEEEEEehhhee
Confidence            9999999999999875322  441 58999999999653

>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2

Probab=98.90  E-value=3.3e-10  Score=125.78  Aligned_cols=256  Identities=14%  Similarity=0.015  Sum_probs=147.8

Q ss_pred             ccccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc----------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT----------------------  548 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~----------------------  548 (945)
                      +++++|.+++.|+|...++.+++++..+.+++++....|.+++.++..+|+...|++.                      
T Consensus         9 ~~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~g   88 (339)
T 1mzj_A            9 RRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVS   88 (339)
T ss_dssp             CCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             cCceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEEEeCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            3679999999999999999999999887777888888999999999999999999988                      


Q ss_pred             ------------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-ccc
Q psy11265        549 ------------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYN  605 (945)
Q Consensus       549 ------------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~  605 (945)
                                        |++. +....+ .+|.++..   |+..|.       +++..+.-...||+.+  +.+. ...
T Consensus        89 t~~~~~~~p~~a~~v~~~lgl~~~~~~~v~~aCas~~~---Al~~A~-------~~i~~G~~~~vLv~g~e~~s~~~~~~  158 (339)
T 1mzj_A           89 TMTNFVHTPPLSVAIAHELGADNAGGFDLSAACAGFCH---ALSIAA-------DAVESGGSRHVLVVATERMTDVIDLA  158 (339)
T ss_dssp             CSCCCCCSSCHHHHHHHHHTCTTCEEEEEECGGGHHHH---HHHHHH-------HHHHHSSCSCEEEEEEEEGGGGSCSS
T ss_pred             ecCCCCCCChHHHHHHHHhCCCCccEEEccccchHHHH---HHHHHH-------HHHHCCCCCEEEEEEEcccccccCcc
Confidence                              1221 111111 38888774   555555       4555553334577554  4432 111


Q ss_pred             ccccccCcccccchhhhH--hhh--cccCccccc--ccccccc-----cccc------ccccccccccchhchHHhhhhh
Q psy11265        606 DFISATDRSQYEGAEAFA--HIK--NLEDTYFNR--DIEQYFM-----SHNL------YRTRLAYNDFISATDRTEYEGA  668 (945)
Q Consensus       606 ~~~~~~E~tqgaGAvA~l--~i~--~~~~~~~s~--d~~Df~R-----p~~~------~~~~~~~g~~s~~~y~~~~~~~  668 (945)
                      |  .......|.||+|++  ...  .+.......  ...|.++     |...      ......+|+.....+.+.+.  
T Consensus       159 d--~~~~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--  234 (339)
T 1mzj_A          159 D--RSLSFLFGDGAGAAVVGPSDVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVV--  234 (339)
T ss_dssp             C--TTTTTTBCEEEEEEEEEEESSCCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHH--
T ss_pred             c--cccceEeccCceEEEEEecCCCCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHH--
Confidence            1  112345688888876  110  110000000  1112221     2100      00111223222222223222  


Q ss_pred             hHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcc
Q psy11265        669 EAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNM  748 (945)
Q Consensus       669 ~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~  748 (945)
                      .+.+..  +.......+..|||+.|++.+++.- ++...+                .++.+   +++..+  + .++||+
T Consensus       235 ~~i~~a--L~~agl~~~did~v~~H~~~~~~~d-~i~~~l----------------g~~~~---~~~~~~--~-~~~Gn~  289 (339)
T 1mzj_A          235 PAAREA--LEVAGLTVGDLVAFVPHQANLRIID-VLVDRL----------------GVPEH---VVVSRD--A-EDTGNT  289 (339)
T ss_dssp             HHHHHH--HHTTTCCGGGCSEEEECCSCHHHHH-HHHHHH----------------TCCTT---SEECCT--H-HHHCBC
T ss_pred             HHHHHH--HHHcCCCHHHCCEEEECCCCHHHHH-HHHHHh----------------CCCcc---ceeeeh--h-hhcCch
Confidence            133333  2222344455678999988766543 222221                11110   033322  2 589999


Q ss_pred             cchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccccc
Q psy11265        749 YTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKAL  788 (945)
Q Consensus       749 YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~  788 (945)
                      ++||++++|..++++....  +| ++|++++||.|.....
T Consensus       290 ~sAs~~~~L~~~~~~g~~~--~G-~~vll~~~G~G~t~~~  326 (339)
T 1mzj_A          290 SSASVALALDRLVRSGAVP--GG-GPALMIGFGAGLSYAG  326 (339)
T ss_dssp             TTHHHHHHHHHHHHHTSSC--TT-CEEEEEEEETTTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCC--CC-CEEEEEEEchhheeEE
Confidence            9999999999999875322  89 9999999999975443

>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*

Probab=98.90  E-value=1.9e-10  Score=126.22  Aligned_cols=251  Identities=18%  Similarity=0.081  Sum_probs=144.6

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      +++|.+++.|+|..+++.+++++..+.+++++....|.+++.++..+|+...|++.                        
T Consensus         2 ~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~g~~   81 (317)
T 1hnj_A            2 YTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATT   81 (317)
T ss_dssp             EEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECS
T ss_pred             CcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEEecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence            58999999999999999999999888888888888999999999999999999988                        


Q ss_pred             ----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-ccccc
Q psy11265        549 ----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYNDF  607 (945)
Q Consensus       549 ----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~~  607 (945)
                                      |+++ +....+ .+|.++..   |+..|.       .++..+.-...||..+  +.+. .+.+ 
T Consensus        82 ~~~~~~~~~a~~v~~~lgl~~~~~~~v~~aCas~~~---al~~A~-------~~i~~g~~~~vlv~g~e~~s~~~~~~d-  150 (317)
T 1hnj_A           82 SATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTY---ALSVAD-------QYVKSGAVKYALVVGSDVLARTCDPTD-  150 (317)
T ss_dssp             CCSCSSSCHHHHHHHHHTCCSSCEEEECCGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECHHHHSCTTC-
T ss_pred             CCCCCCCcHHHHHHHHhCCCCCeEEeeCcccHHHHH---HHHHHH-------HHHHCCCCCEEEEEEechhcccCCchh-
Confidence                            1221 111111 38888774   555555       4455443334577554  3332 1221 


Q ss_pred             ccccCcccccchhhhH--h-----hhcccCcccccccccccc-cccc------ccccccccccchhchHHhhhhhhHHHh
Q psy11265        608 ISATDRSQYEGAEAFA--H-----IKNLEDTYFNRDIEQYFM-SHNL------YRTRLAYNDFISATDRTEYEGAEAFAH  673 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l--~-----i~~~~~~~~s~d~~Df~R-p~~~------~~~~~~~g~~s~~~y~~~~~~~~a~~~  673 (945)
                       +......|.||+|++  .     |.....+.... ..|.++ |.+.      ......+|+.....+.+.+.  .+.+.
T Consensus       151 -~~~~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~i~~  226 (317)
T 1hnj_A          151 -RGTIIIFGDGAGAAVLAASEEPGIISTHLHADGS-YGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELA--HIVDE  226 (317)
T ss_dssp             -HHHHTTBCCEEEEEEEEEESSCSEEEEEEEECGG-GGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHH--HHHHH
T ss_pred             -cccceeeccccEEEEEEecCCCceeeEEEEEcCC-CCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHH--HHHHH
Confidence             011234578887765  1     11111011111 112222 2100      00111233322222222222  12222


Q ss_pred             hhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhH
Q psy11265        674 IKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSL  753 (945)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSl  753 (945)
                      .  +.......+..||++.|++.+++.. ++...+                ..+.    .++. +  .-.++||+++||+
T Consensus       227 a--L~~agl~~~did~v~~H~~~~~~~d-~i~~~l----------------g~~~----~~~~-~--~~~~~Gn~~~As~  280 (317)
T 1hnj_A          227 T--LAANNLDRSQLDWLVPHQANLRIIS-ATAKKL----------------GMSM----DNVV-V--TLDRHGNTSAASV  280 (317)
T ss_dssp             H--HHHTTCCGGGCCEEEECCSCHHHHH-HHHHHT----------------TCCG----GGBC-C--CHHHHCBCGGGHH
T ss_pred             H--HHHcCCCHHHCCEEEEcCCCHHHHH-HHHHHc----------------CCCH----HHhH-h--hHhhhCcHHHHHH
Confidence            2  2222344455678999988766533 333322                1111    1221 1  1258999999999


Q ss_pred             HHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        754 YGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       754 yl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      +++|..++++....  +| ++|++++||.|....
T Consensus       281 ~~~L~~~~~~~~~~--~G-~~vll~~~G~G~t~~  311 (317)
T 1hnj_A          281 PCALDEAVRDGRIK--PG-QLVLLEAFGGGFTWG  311 (317)
T ss_dssp             HHHHHHHHHTTCSC--TT-CEEEEEEEETTTEEE
T ss_pred             HHHHHHHHHhCCCC--CC-CEEEEEEEchhheeE
Confidence            99999999875322  89 999999999997543

>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A

Probab=98.88  E-value=2.7e-10  Score=129.30  Aligned_cols=258  Identities=13%  Similarity=0.029  Sum_probs=145.5

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCc---------cccccccccccccc-CCC----------------------c
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSA---------GKYTIGLGQAKMGF-CSD----------------------L  539 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~---------gKy~~Glgq~~msv-~~~----------------------~  539 (945)
                      +.++|.+++.|+|..+++.++|++..+..+         .++....|.+++.+ +.+                      +
T Consensus        31 ~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~~  110 (393)
T 1ted_A           31 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY  110 (393)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred             cccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHHh
Confidence            568999999999999999999998766543         24445566666666 544                      5


Q ss_pred             chhhhhhhc---------------------------------------cCcchhh--HH--HHHHHHhHHHHHHHHhCcc
Q psy11265        540 EDINSICLT---------------------------------------LSIQCYL--GA--LDACYQGYRAKAAKLTGKE  576 (945)
Q Consensus       540 EDivTma~~---------------------------------------Lsl~~~~--~~--ldaCy~~~~~~~al~~a~~  576 (945)
                      |+...||+.                                       |++...+  ..  ..+|.++..   |+..|. 
T Consensus       111 ~~~~~la~~Aa~~aL~~agl~~~~Id~vi~~t~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCas~~~---Al~~A~-  186 (393)
T 1ted_A          111 EHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMN---ALGTAT-  186 (393)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHH---HHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCCCccChHHHHHHHHcCcCCCcceeEeccchhHHHHH---HHHHHH-
Confidence            788889887                                       2222211  11  147887773   555555 


Q ss_pred             ccCCCcceeeecCCcceEEEec--cccccc--cccc-cccCcccccchhhhH--hhh----------cccCc-cc-ccc-
Q psy11265        577 LSLGDFDAVLFHTPYCKLVQKS--LARLAY--NDFI-SATDRSQYEGAEAFA--HIK----------NLEDT-YF-NRD-  636 (945)
Q Consensus       577 ~~l~~~~~v~~~~p~~kLV~as--~ary~~--~~~~-~~~E~tqgaGAvA~l--~i~----------~~~~~-~~-s~d-  636 (945)
                            +++..+.-...||+.+  +.+.-.  .+.. .......|.||+|++  .-.          ++..+ +. ..| 
T Consensus       187 ------~~i~~G~~~~vLv~g~e~~s~~~~~~~~r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~i~~~~~~~~~d~  260 (393)
T 1ted_A          187 ------NYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNT  260 (393)
T ss_dssp             ------HHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTC
T ss_pred             ------HHHHcCCCCEEEEEEEEeccccCCCCCCHHHhhhhhhhcCccEEEEEecCCCccccCcceeeeeccceEEcCCc
Confidence                  5555554344577665  444311  1100 001346788998876  110          11111 11 011 


Q ss_pred             -ccccccccccccccccccccchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhcccccc
Q psy11265        637 -IEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYF  715 (945)
Q Consensus       637 -~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~  715 (945)
                       ..++|++... .....+|+.....+.+.+.  .+.+..  +.......+..|||+.|++..++.....+.+        
T Consensus       261 ~~~~~~~~~~~-g~~~~~g~~v~~~~~~~~~--~~i~~a--L~~agl~~~dId~~~~H~~~~~i~d~~~~~l--------  327 (393)
T 1ted_A          261 EDGIVLGVNHN-GITCELSENLPGYIFSGVA--PVVTEM--LWDNGLQISDIDLWAIHPGGPKIIEQSVRSL--------  327 (393)
T ss_dssp             TTSEEEEEETT-EEEEEECTTHHHHHHHHHH--HHHHHH--HHHTTCCGGGCSCEEECCSCHHHHHHHHHHH--------
T ss_pred             hhhccceecCC-CeEEecCchHHHHHHHHHH--HHHHHH--HHHcCCCHhHCCEEEECCCcHHHHHHHHHHc--------
Confidence             1224443100 0112233333333333332  133333  1222334455678999999876643322222        


Q ss_pred             chhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        716 NRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                               .++    ..|+..+...-+++||+++||++++|..++++.... -+| ++|++++||.|....
T Consensus       328 ---------gl~----~~k~~~s~~~~~~~GNt~sAsi~~~L~~~~~~g~~~-~~G-d~vll~~~G~G~t~~  384 (393)
T 1ted_A          328 ---------GIS----AELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESA-KAI-STGVAFAFGPGVTVE  384 (393)
T ss_dssp             ---------TCC----GGGGHHHHHHHHHHCBCTHHHHHHHHHHHHHSCSSS-SSS-EEEEEEEEETTTEEE
T ss_pred             ---------CCC----HHHHHHHHHHHHhhCCchHhHHHHHHHHHHhcCccC-CCC-CeEEEEEeccchhhh
Confidence                     122    134554434458899999999999999999875310 189 999999999996554

>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}

Probab=98.87  E-value=4.7e-10  Score=122.37  Aligned_cols=250  Identities=16%  Similarity=0.071  Sum_probs=142.4

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+++|.+++.|+|..+++.+++++..+.+++++....|.+++.++.+ ++...|++.                       
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~-~~~~~l~~~a~~~al~~ag~~~~~id~v~~~~   79 (309)
T 2ebd_A            1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKE-ETITYMATQAAKEALREANLSPEELDLIILAT   79 (309)
T ss_dssp             CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECSS-CCHHHHHHHHHHHHHHHHTCCGGGCSEEEEEC
T ss_pred             CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeecCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            46899999999999999999999988877777777778888888766 888888877                       


Q ss_pred             -----------------cCcch-hhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cccc
Q psy11265        549 -----------------LSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~~-~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~  606 (945)
                                       |+++. ....+ .+|.++..   |+..|.       .++..+.-...||..+  +.+. .+.+
T Consensus        80 ~~~~~~~~~~a~~v~~~lgl~~~~~~~v~~~C~s~~~---al~~A~-------~~i~~g~~~~vlv~g~e~~s~~~~~~~  149 (309)
T 2ebd_A           80 LTPQKRFPSTACLVQAQLKAKGVYAFDISAACSGFIY---ALDIAD-------SFIKSGKAKNVLVIGAEKLSEAVDWED  149 (309)
T ss_dssp             SSCSSSSSCHHHHHHHHHTCTTCEEEEEECGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEEEGGGTCCTTC
T ss_pred             CCCCCCCCcHHHHHHHHhCCCCceEEecCccchHHHH---HHHHHH-------HHHHCCCCCEEEEEEecccccccCccc
Confidence                             11111 00111 37887774   555554       4455443334577554  4432 1211


Q ss_pred             cccccCcccccchhhhH--hhh---cccC---ccccccccccccccccccccccccccchhchHHhhhhhhHHHhhhhcc
Q psy11265        607 FISATDRSQYEGAEAFA--HIK---NLED---TYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLE  678 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l--~i~---~~~~---~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~  678 (945)
                        +......|.||+|++  ...   .+..   +..+.....+..|  .......+|..+...+.+.+.  .+.+..  +.
T Consensus       150 --~~~~~~~gdGaaA~vL~~~~~~~~i~~~~~~~~g~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~--~~i~~a--l~  221 (309)
T 2ebd_A          150 --RSTCVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELLHAD--NCGYIRMKGRELFKVAVRSME--EVCREV--LE  221 (309)
T ss_dssp             --TTTTTTBCEEEEEEEEEECSSSCEEEEEEEEECGGGGGGEEEC--TTCCEEECHHHHHHHHHHHHH--HHHHHH--HH
T ss_pred             --hhhccccccccEEEEEEecCCCCceeEEEEEecCCccceeEeC--CCCeEEEccHHHHHHHHHHHH--HHHHHH--HH
Confidence              122345788998876  110   0000   1111100111122  000112234333333333332  133333  11


Q ss_pred             cccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHH
Q psy11265        679 DTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLV  758 (945)
Q Consensus       679 ~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~  758 (945)
                      ......+..||++.|.+++++.. ++...+                .+..    .++. +.  -.++||+++||.+++|.
T Consensus       222 ~agl~~~did~~~~H~~~~~~~~-~~~~~l----------------g~~~----~~~~-~~--~~~~Gh~~~As~~~~L~  277 (309)
T 2ebd_A          222 KAGVKPEEVSLVIPHQANVRIIN-ALAEKL----------------NIPK----EKVF-VN--IQKYGNTSAASIPIALH  277 (309)
T ss_dssp             HHTCCGGGCSEEEECCSCHHHHH-HHHHHT----------------TCCG----GGBC-CC--HHHHCBCGGGHHHHHHH
T ss_pred             HcCCCHHHCCEEEEcCCCHHHHH-HHHHHh----------------CCCH----HHhh-hh--HhhhcchHHHHHHHHHH
Confidence            12334455678999998876643 232221                1111    1222 11  25899999999999999


Q ss_pred             HHhccCCccccCCCcEEEEEecCCCcccc
Q psy11265        759 SLLIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       759 SlL~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .++++....  +| ++|++++||.|....
T Consensus       278 ~~~~~g~~~--~G-~~~l~~~~G~G~~~~  303 (309)
T 2ebd_A          278 EAIKEGKVK--RG-DLILMTAMGGGLTWG  303 (309)
T ss_dssp             HHHHTTCCC--TT-CEEEEEEEETTTEEE
T ss_pred             HHHHcCCCC--CC-CEEEEEEEchhhhhE
Confidence            999875322  79 999999999986543

>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}

Probab=98.85  E-value=3.4e-10  Score=125.25  Aligned_cols=254  Identities=13%  Similarity=0.053  Sum_probs=147.3

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+++|.+++.|+|..+++.+++++..+.+.+++....|.+++.++.+ |+...||+.                       
T Consensus         4 m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~-~~~~~la~~Aa~~al~~ag~~~id~vi~~t~~   82 (331)
T 2x3e_A            4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIAGD-LGSGDLALRAASAALASAGLERVDAVVLATST   82 (331)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEECCTT-CCHHHHHHHHHHHHHHHHTCSCCSEEEEECSS
T ss_pred             ceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEecCC-CCHHHHHHHHHHHHHHhCCcccCCEEEEEeCC
Confidence            57999999999999999999999988877788888889999999877 888888887                       


Q ss_pred             ---------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-ccccc
Q psy11265        549 ---------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YNDFI  608 (945)
Q Consensus       549 ---------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~~~  608 (945)
                                     |+++ +....+ .+|.++..   |+..|.       +++..+.-...||+.+  +.+.. ..|  
T Consensus        83 ~~~~~p~~a~~v~~~lgl~~~~~~~v~~aCas~~~---Al~~A~-------~~i~~g~~~~vLv~g~e~~s~~~~~~d--  150 (331)
T 2x3e_A           83 GDFCCPATAPRVAARLGLVGALAFDLSAAATGFVY---GLASVG-------SLISAGLADSALLVGVDTFSHTLDPAD--  150 (331)
T ss_dssp             CSEEESCSHHHHHHHTTCTTSEEEEEECGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECGGGGSCTTC--
T ss_pred             CCCCCChHHHHHHHHhCCCCCcEEEEcCcChHHHH---HHHHHH-------HHHHcCCCCEEEEEEeeccccCCCccc--
Confidence                           2222 111111 38888874   555555       5555553334577654  44321 111  


Q ss_pred             cccCcccccchhhhH--hhh--c---ccCcccccc--cccccc-cccccc---------ccccccccchhchHHhhhhhh
Q psy11265        609 SATDRSQYEGAEAFA--HIK--N---LEDTYFNRD--IEQYFM-SHNLYR---------TRLAYNDFISATDRTEYEGAE  669 (945)
Q Consensus       609 ~~~E~tqgaGAvA~l--~i~--~---~~~~~~s~d--~~Df~R-p~~~~~---------~~~~~g~~s~~~y~~~~~~~~  669 (945)
                      .......|.||+|++  .-.  .   +.......|  ..|++. |....+         ....+|......+.+.+.  .
T Consensus       151 ~~~~~~~GdGA~A~vL~~~~~a~~~~i~~~~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~--~  228 (331)
T 2x3e_A          151 RSTRALFGDGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMS--D  228 (331)
T ss_dssp             HHHHHHBCCEEEEEEEEEECTTSTTBEEEEEEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHH--H
T ss_pred             cccceeeccccEEEEEEecCCCCCCceEEEEEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHH--H
Confidence            011235688988876  111  1   101001111  123332 210000         011122222222222222  1


Q ss_pred             HHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCccc
Q psy11265        670 AFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMY  749 (945)
Q Consensus       670 a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~Y  749 (945)
                      +.+..  +.......+..|||+.|++.+++.....+.+                 .++.    .|+..+  + .++||++
T Consensus       229 ~i~~a--L~~agl~~~did~~~~H~~~~~~~d~~~~~l-----------------g~~~----~~~~~~--~-~~~Gnt~  282 (331)
T 2x3e_A          229 SVRRV--LDRVGWQASDLHHLVPHQANTRILAAVADQL-----------------DLPV----ERVVSN--I-AEVGNTV  282 (331)
T ss_dssp             HHHHH--HHHHTCCGGGCSEEEECCCCHHHHHHHHHHH-----------------TCCG----GGBCCC--H-HHHCBCG
T ss_pred             HHHHH--HHHcCCCHHHCCEEEEcCCCHHHHHHHHHHc-----------------CCCH----HHHhhh--H-hhhCcHH
Confidence            33333  1222344455678999998877654322222                 1111    223222  2 6899999


Q ss_pred             chhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccc
Q psy11265        750 TPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       750 TaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~  789 (945)
                      +||++++|..++++....  +| ++|++++||.|......
T Consensus       283 sAs~~~~L~~~~~~~~~~--~G-~~vll~~~G~G~~~~~~  319 (331)
T 2x3e_A          283 AASIPLALAHGLRQGILR--DG-GNMVLTGFGAGLTWGSV  319 (331)
T ss_dssp             GGHHHHHHHHHHHTTCSC--TT-CEEEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCC--CC-CEEEEEEEeHHhhheee
Confidence            999999999999875322  89 99999999999765543

>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A

Probab=98.84  E-value=1.9e-09  Score=120.12  Aligned_cols=224  Identities=9%  Similarity=0.009  Sum_probs=144.7

Q ss_pred             cccceeeeeeecCCccccHHHHHhhc-------CCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhh
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHD-------QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQI   79 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~-------gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~I   79 (945)
                      ++|+|.+|..|+|+..|+++||++..       +.+++++....|.+++.++.+.|+...||+.|++++|++.+++|++|
T Consensus        11 ~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~al~~ag~~~~~I   90 (345)
T 3s21_A           11 QNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKI   90 (345)
T ss_dssp             SSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEEECSSCCCHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred             cceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence            67999999999999999999999863       78899999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcc
Q psy11265         80 GQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLK  159 (945)
Q Consensus        80 g~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~  159 (945)
                      +.| .++|..-   ..+.  ..........|+...++        ..+++..+|.|++.| |..|..+|+  +  ++...
T Consensus        91 d~v-i~~t~~~---~~~~--p~~a~~v~~~lGl~~~~--------~~~~v~~aC~s~~~a-l~~A~~~i~--~--g~~~~  151 (345)
T 3s21_A           91 GLL-INTSVSR---DYLE--PSTASIVSGNLGVSDHC--------MTFDVANACLAFING-MDIAARMLE--R--GEIDY  151 (345)
T ss_dssp             CEE-EECCSCC---SCSS--SCHHHHHHHHHTCCTTC--------EEEECCCGGGHHHHH-HHHHHHHHH--H--TSCSE
T ss_pred             CEE-EEEeCCC---CCCC--ChHHHHHHHHhCCCCCc--------eEEeECCcCHHHHHH-HHHHHHHHH--C--CCCCE
Confidence            988 8888710   0000  01111122334443333        457888899999999 888999996  3  35678


Q ss_pred             eee-eccccccc----------ccCCC--------CCC-C----cceeec---------cccccc-cccccCcccCCCCC
Q psy11265        160 TLV-TKLSDVQD----------RLDAR--------RPV-P----PAEFTR---------ILAAKK-ENLHKYPFRSETPP  205 (945)
Q Consensus       160 ~LV-asdia~y~----------~~~~~--------~~t-~----P~~~~~---------~~~~~~-~~~~~~Df~rP~~~  205 (945)
                      +|| ++|.....          ...+.        ..+ .    -.+++.         ..+... ...+..+++++...
T Consensus       152 vLvvg~e~~s~~~~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  231 (345)
T 3s21_A          152 ALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLD  231 (345)
T ss_dssp             EEEEEEECCHHHHHHHHHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECGGGTTC------
T ss_pred             EEEEEEcccchhhccccccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCcchhhhccccCc
Confidence            898 87764211          00010        000 0    001110         001000 01223455565432


Q ss_pred             CccccCcc----hhHHHHHHHHHHHHhhhccCCCCCCccccceee-eecCCCcccccc
Q psy11265        206 GEYLFDGS----YYLESIDDFHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQTE  258 (945)
Q Consensus       206 ~~~~vdG~----~YL~~ld~~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m~e  258 (945)
                       ....+|.    .+++.+.+++++..++.+-        ..++++ +++|....++.+
T Consensus       232 -~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl--------~~~did~~v~Hq~~~~i~~  280 (345)
T 3s21_A          232 -RMVTDTRLLLIEGIKLAQKTFVAAKQVLGW--------AVEELDQFVIHQVSRPHTA  280 (345)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHCC--------CGGGCSEEEECCSCHHHHH
T ss_pred             -ceEEcHHHHHHHHHHHHHHHHHHHHHHcCC--------CHHHCCEEEeCCCCHHHHH
Confidence             1235775    6778888888888887643        345666 778877766643

>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*

Probab=98.80  E-value=3.1e-09  Score=117.46  Aligned_cols=141  Identities=13%  Similarity=0.083  Sum_probs=111.8

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      +++|+|.++..|+|+..|+.+||++.-+.+..++....|..+..++.+.| ...||+.|++++|++.+++|++|+.| .+
T Consensus         2 ~~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~a~~~e-~~~La~~Aa~~aL~~ag~~~~~Id~l-i~   79 (321)
T 3il6_A            2 KNYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRIVTQEN-TSDLCHQVAKQLLEKSGKQASEIDFI-LV   79 (321)
T ss_dssp             CCEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEECCSSCC-HHHHHHHHHHHHHHHHTCCGGGCCEE-EE
T ss_pred             CCcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEEECCCCC-HHHHHHHHHHHHHHHcCCCHHHCCEE-EE
Confidence            46899999999999999999999999999988888888999999999988 99999999999999999999999988 88


Q ss_pred             cCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      +|..-   ...  ...........|+..+ +        ..+++.++|.|++.| |..|..+|+  +  ++.+.+|| ++
T Consensus        80 ~t~~~---~~~--~p~~a~~v~~~lGl~~-~--------~~~~v~~aC~s~~~a-l~~A~~~i~--~--g~~~~vLvvg~  140 (321)
T 3il6_A           80 ATVTP---DFN--MPSVACQVQGAIGATE-A--------FAFDISAACSGFVYA-LSMAEKLVL--S--GRYQTGLVIGG  140 (321)
T ss_dssp             ECSSC---SCS--SSCHHHHHHHHTTCTT-C--------EEEEECCGGGHHHHH-HHHHHHHHH--T--SSCCCEEEEEE
T ss_pred             EeCCC---CcC--CCcHHHHHHHHcCCCC-c--------eEEEeCcccHHHHHH-HHHHHHHHH--C--CCCCEEEEEEE
Confidence            87610   000  0101111223344432 3        567888999999999 999999996  3  35678998 88


Q ss_pred             ccc
Q psy11265        165 LSD  167 (945)
Q Consensus       165 dia  167 (945)
                      |..
T Consensus       141 e~~  143 (321)
T 3il6_A          141 ETF  143 (321)
T ss_dssp             ECG
T ss_pred             ccc
Confidence            764

>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum}

Probab=98.78  E-value=9.6e-10  Score=123.63  Aligned_cols=257  Identities=12%  Similarity=0.033  Sum_probs=139.7

Q ss_pred             CCCCCccccccccceeeccccccchhHhhhhcC--cC--------cccccccccccccccCCCc----------------
Q psy11265        486 MSHQWPENVGILGIEFYFPSQYVDQTELEKHDQ--VS--------AGKYTIGLGQAKMGFCSDL----------------  539 (945)
Q Consensus       486 ~t~~~~~~vGI~ai~~Y~P~~~l~~~el~~~~g--~d--------~gKy~~Glgq~~msv~~~~----------------  539 (945)
                      +.|.++++++|.+++.|+|..+++.++|++..+  .+        ..++....|.+++.++.++                
T Consensus         6 ~~~~~~~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~   85 (374)
T 2h84_A            6 LSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETIT   85 (374)
T ss_dssp             ------CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHH
T ss_pred             hhccCCCCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHH
Confidence            455667789999999999999999999998642  21        1334445566667676555                


Q ss_pred             -------chhhhhhhc---------------------------------------cCcch--hhHHH--HHHHHhHHHHH
Q psy11265        540 -------EDINSICLT---------------------------------------LSIQC--YLGAL--DACYQGYRAKA  569 (945)
Q Consensus       540 -------EDivTma~~---------------------------------------Lsl~~--~~~~l--daCy~~~~~~~  569 (945)
                             |+...||+.                                       |+++.  ....+  .+|.++..   
T Consensus        86 ~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~~t~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~---  162 (374)
T 2h84_A           86 DVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLS---  162 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCCCCCCcHHHHHHHHcCcCCCCceEEecCCcCHHHHH---
Confidence                   788889887                                       33332  22223  38888774   


Q ss_pred             HHHhCccccCCCcceeeecCCcceEEEec--ccccc--cccccc-ccCcccccchhhhH--h--------hhcccC-ccc
Q psy11265        570 AKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA--YNDFIS-ATDRSQYEGAEAFA--H--------IKNLED-TYF  633 (945)
Q Consensus       570 al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~--~~~~~~-~~E~tqgaGAvA~l--~--------i~~~~~-~~~  633 (945)
                      |+..|.       +++..+.-...||+.+  +.+..  ..|--. ......|.||+|++  .        +.++.. +..
T Consensus       163 al~~A~-------~~i~~g~~~~vLv~g~e~~s~~~~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~l~~~g~~  235 (374)
T 2h84_A          163 SLRTAA-------SLAKASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINR  235 (374)
T ss_dssp             HHHHHH-------HHHTTCTTCEEEEEEEECCGGGCCCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCCCCEEEEEEEEE
T ss_pred             HHHHHH-------HHHHcCCCCEEEEEEEEecchhhcCCCCHHHHhhhhhhccCcEEEEEecCCCcccCCceeEEeeeeE
Confidence            566555       5555554344577665  44432  111000 01245688988876  1        111111 111


Q ss_pred             -ccccccc--ccccccccccccccccchhch---HHhhhhhhHHHhhhhccccc------CCcchHHHHHHhCCCccchH
Q psy11265        634 -NRDIEQY--FMSHNLYRTRLAYNDFISATD---RTEYEGAEAFAHIKNLEDTY------FNRDIEQYFMSHNRTEYEGA  701 (945)
Q Consensus       634 -s~d~~Df--~Rp~~~~~~~~~~g~~s~~~y---~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~H~p~~~m~~  701 (945)
                       ..+..|.  |++...+ .....   +..++   .+.+.  .+++..  ++...      ...+..||| .|++.+++..
T Consensus       236 ~~~~~~~~~~~~~~~~g-~~~~~---~~~v~~~~~~~~~--~~i~~~--L~~ag~~~~~~l~~~did~~-~H~~~~~i~d  306 (374)
T 2h84_A          236 SFPNTENAMVWDLEKEG-WNLGL---DASIPIVIGSGIE--AFVDTL--LDKAKLQTSTAISAKDCEFL-IHTGGKSILM  306 (374)
T ss_dssp             ECSSCTTSEEEEEETTE-EEEEE---CTTHHHHHHHHHH--HHHHHH--HHHHTTTSCSCCCSSSSEEE-ECCCCHHHHH
T ss_pred             EeCCCcccceeEEecCc-EEEEe---CchHHHHHHHHHH--HHHHHH--HHhcCCccccCCChhhcCEe-ECCCCHHHHH
Confidence             0011111  2110000 00001   11111   11121  122222  11112      334556889 9998866543


Q ss_pred             HHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecC
Q psy11265        702 EAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYG  781 (945)
Q Consensus       702 ~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~G  781 (945)
                      ...+.+                 .++    ..|+..+...-+++||+++||++++|..++++..    +| ++|++++||
T Consensus       307 ~~~~~l-----------------gl~----~~k~~~s~~~~~~~Gnt~sasi~~~L~~~~~~~~----~G-d~vll~~~G  360 (374)
T 2h84_A          307 NIENSL-----------------GID----PKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKS----LP-TYSISLAFG  360 (374)
T ss_dssp             HHHHHT-----------------TCC----GGGGHHHHHHHHHHCBCTTHHHHHHHHHHHTCSC----CC-SEEEEEEEE
T ss_pred             HHHHHc-----------------CCC----HHHHHHHHHHHHHhCCchhhHHHHHHHHHHhhcC----CC-CeEEEEEec
Confidence            322221                 222    1455555444588999999999999999998753    89 999999999


Q ss_pred             CCcccc
Q psy11265        782 SDNIKA  787 (945)
Q Consensus       782 sG~~~~  787 (945)
                      .|....
T Consensus       361 ~G~t~~  366 (374)
T 2h84_A          361 PGLAFE  366 (374)
T ss_dssp             TTTEEE
T ss_pred             cchhhh
Confidence            997654

>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A

Probab=98.77  E-value=3.1e-09  Score=119.62  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=113.1

Q ss_pred             cccceeeeeeecCCccccHHHHHhhc-CCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHD-QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQV   85 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~-gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v   85 (945)
                      ++|+|.++..|+|+..|+++||++.. +.+..++....|.++..++.+.|+...||+.|++++|++.+++|++|+.| ++
T Consensus        29 ~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~v-i~  107 (365)
T 3gwa_A           29 PRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRIAAPRETAADLAYEAARKLFAQGAVGADQVDFV-IL  107 (365)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHTTSCCGGGCCEE-EE
T ss_pred             ccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EE
Confidence            67999999999999999999999987 77888888889999999999999999999999999999999999999998 88


Q ss_pred             cCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ec
Q psy11265         86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TK  164 (945)
Q Consensus        86 ~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-as  164 (945)
                      +|..   ...+..+  ........++...++        ..+++..+|.|++.| |..|..+|+  +  ++...+|| ++
T Consensus       108 ~t~~---~~~~~p~--~a~~v~~~lGl~~~~--------~~~~v~~~C~s~~~A-l~~A~~~i~--~--g~~~~vLvvg~  169 (365)
T 3gwa_A          108 CTQA---PDYVLPT--SACMLQHRLGIPTHA--------GALDVNLGCSGYVYG-LSLAKGLVE--T--GAARCVLLLTA  169 (365)
T ss_dssp             EESS---CSCSBSC--HHHHHHHHTTCCTTS--------EEEEEECSTTHHHHH-HHHHHHHHH--T--TSCSEEEEEEE
T ss_pred             EeCC---CCCCCCc--HHHHHHHHcCCCCCc--------eEEEecccChHHHHH-HHHHHHHHH--c--CCCCEEEEEEE
Confidence            7761   0111111  111222344443234        457888999999999 899999996  3  35678888 88


Q ss_pred             cccc
Q psy11265        165 LSDV  168 (945)
Q Consensus       165 dia~  168 (945)
                      |...
T Consensus       170 e~~s  173 (365)
T 3gwa_A          170 DTYS  173 (365)
T ss_dssp             ECGG
T ss_pred             chhh
Confidence            7653

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.76  E-value=2e-09  Score=122.38  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      ..+..|+.|+|||+|+.   ||++||++.  ++|+.|.+|.|++||||+.+|.+|++||+..|.++...  .||.     
T Consensus       159 ~~~~~gD~V~i~y~g~~---dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~--dy~~-----  226 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI---DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE--DYHA-----  226 (392)
T ss_dssp             CCCCTTCEEEEEEEEES---SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCT--TCSC-----
T ss_pred             CCCCCCCEEEEEEEEEE---CCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCcc--cccc-----
Confidence            35789999999999996   899999984  68999999999999999999999999999999996333  4553     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                              .                        -.+|.+++|+|+|++|..
T Consensus       227 --------~------------------------~laGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          227 --------E------------------------NLKGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             --------T------------------------TTSSCEEEECCCEEEEEE
T ss_pred             --------C------------------------CCCCCeEEEEEEEEEEEc
Confidence                    1                        135789999999999976

>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A

Probab=98.74  E-value=2.2e-09  Score=117.39  Aligned_cols=250  Identities=17%  Similarity=0.129  Sum_probs=140.5

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |+++|.+++.|+|..+++.+++++..+.+++++....|.+++.++..+|+...|++.                       
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~~~   80 (313)
T 1zow_A            1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIVAT   80 (313)
T ss_dssp             CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEEC
T ss_pred             CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEEecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            468999999999999999999999878777777777888888999999999999988                       


Q ss_pred             -----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cccc
Q psy11265        549 -----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~  606 (945)
                                       |++. +....+ .+|.++..   |+..|.       .++..+.-...||+.+  +.+. .+.|
T Consensus        81 ~~~~~~~~~~a~~v~~~lgl~~~~~~~v~~aCas~~~---al~~A~-------~~i~~g~~~~vLv~g~e~~s~~~~~~d  150 (313)
T 1zow_A           81 ATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMY---SMITAK-------QYVQSGDYHNILVVGADKLSKITDLTD  150 (313)
T ss_dssp             SSCSCSSSCHHHHHHHHHTCCSCCEEEEECGGGHHHH---HHHHHH-------HHHHTTSCSCEEEEEEEEGGGTCCTTC
T ss_pred             CCCCCCCCcHHHHHHHHhCCCCCcEEEECCcCHHHHH---HHHHHH-------HHHHCCCCCEEEEEEEcccccccCccc
Confidence                             1111 011111 37887774   555554       4455443334577554  4443 1111


Q ss_pred             cccccCcccccchhhhH--hhh---cccC---ccccccccccccccccccccccccccchhchHHhhhhhhHHHhhhhcc
Q psy11265        607 FISATDRSQYEGAEAFA--HIK---NLED---TYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLE  678 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l--~i~---~~~~---~~~s~d~~Df~Rp~~~~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~  678 (945)
                        ......-|.||+|++  ...   .+..   ..+......++.|.+. .....+|......+.+.+.  .+.+..  +.
T Consensus       151 --~~~~~~~gdGa~A~vl~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~~i~~a--l~  223 (313)
T 1zow_A          151 --RSTAVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDT-GKLKMNGREVFKFAVRIMG--DASTRV--VE  223 (313)
T ss_dssp             --HHHHTTBCEEEEEEEEEECSTTCEEEEEEEEECGGGGGGEEECTTT-CCEEECHHHHHHHHHHHHH--HHHHHH--HH
T ss_pred             --ccceeeeccceEEEEEEecCCCCceeEEEEEEcCCCcCeEEecCCC-CeeEeccHHHHHHHHHHHH--HHHHHH--HH
Confidence              011233577777765  110   0100   1111111112233100 0001123222122222221  122222  12


Q ss_pred             cccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHH
Q psy11265        679 DTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLV  758 (945)
Q Consensus       679 ~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~  758 (945)
                      ......+..||++.|.+.+++.....+.+                 .++.    +++. ..  -.++||+++||++++|.
T Consensus       224 ~agl~~~did~~~~H~~~~~~~d~~~~~l-----------------g~~~----~~~~-~~--~~~~Gh~~~as~~~~L~  279 (313)
T 1zow_A          224 KANLTSDDIDLFIPHQANIRIMESARERL-----------------GISK----DKMS-VS--VNKYGNTSAASIPLSID  279 (313)
T ss_dssp             HTTCCGGGCSEEEECCSCHHHHHHHHHHH-----------------TCCG----GGBC-CC--HHHHCBCGGGHHHHHHH
T ss_pred             HcCCCHHHCCEEEEcCCCHHHHHHHHHHh-----------------CCCH----HHHH-Hh--HhhhCchHHHHHHHHHH
Confidence            22344455678999998876654322221                 1111    1221 11  25899999999999999


Q ss_pred             HHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        759 SLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       759 SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      .++++....  +| ++|++++||.|..
T Consensus       280 ~~~~~~~~~--~g-~~vl~~~~G~G~t  303 (313)
T 1zow_A          280 QELKNGKLK--DD-DTIVLVGFGGGLT  303 (313)
T ss_dssp             HHHHTTCCC--TT-CEEEEEEEETTTE
T ss_pred             HHHHcCCCC--CC-CEEEEEEEchhhh
Confidence            999875322  89 9999999999865

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=98.71  E-value=1.2e-09  Score=137.38  Aligned_cols=257  Identities=14%  Similarity=0.076  Sum_probs=147.7

Q ss_pred             cccccccceeeccccccchhHhhhh---cCcCccc---------ccccccccccccCCCcc-------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKH---DQVSAGK---------YTIGLGQAKMGFCSDLE-------------------  540 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~---~g~d~gK---------y~~Glgq~~msv~~~~E-------------------  540 (945)
                      .+++|.+++.|+|..++++++|+++   .+.++..         +....|.+++.++...|                   
T Consensus       602 ~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~~~~~~~~~~~~~~~~r  681 (979)
T 3tsy_A          602 GPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIR  681 (979)
T ss_dssp             SCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHCHHHHSSSSCCHHHH
T ss_pred             CCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhhcCcccccccCCCHHHH
Confidence            4799999999999999999999998   5665543         55667888888888877                   


Q ss_pred             ------hhhhhhhc---------------------------------------cCcch---hhHHH-HHHHHhHHHHHHH
Q psy11265        541 ------DINSICLT---------------------------------------LSIQC---YLGAL-DACYQGYRAKAAK  571 (945)
Q Consensus       541 ------DivTma~~---------------------------------------Lsl~~---~~~~l-daCy~~~~~~~al  571 (945)
                            +..+||+.                                       |++..   ....+ .+|.++..   |+
T Consensus       682 ~~~~~~~~~~la~~Aa~~AL~~agl~~~dId~ii~~t~~~~~~p~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~---Al  758 (979)
T 3tsy_A          682 QEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGT---VL  758 (979)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCCTTHHHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEEeeCCCCCCcHHHHHHHHcCCCcccEEEeeeccccHhHHH---HH
Confidence                  57778877                                       44432   12222 38999884   66


Q ss_pred             HhCccccCCCcceeeecCCcceEEEec-cccccccccccccCc---------ccccchhhhH--hh--hccc-C-----c
Q psy11265        572 LTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFISATDR---------SQYEGAEAFA--HI--KNLE-D-----T  631 (945)
Q Consensus       572 ~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~~~~E~---------tqgaGAvA~l--~i--~~~~-~-----~  631 (945)
                      ..|.       +++..+.-...||+.+ .....+.+   ....         .-|+||+|++  .-  ..+. .     +
T Consensus       759 ~~A~-------~~i~sG~~~~vLvvg~e~~~~~~~~---~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~  828 (979)
T 3tsy_A          759 RTAK-------DLAENNAGARVLVVCSEITVVTFRG---PSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVS  828 (979)
T ss_dssp             HHHH-------HHHHTSTTCEEEEEEEECTTTTCCC---CCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEE
T ss_pred             HHHH-------HHHHhCCCCEEEEEEEEecchheeC---CCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEe
Confidence            6666       6666665445688776 54443332   1111         2388888876  10  0000 0     0


Q ss_pred             ccccccccccccccccccccccc---ccchhchHHhhhh-hhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHh
Q psy11265        632 YFNRDIEQYFMSHNLYRTRLAYN---DFISATDRTEYEG-AEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHI  707 (945)
Q Consensus       632 ~~s~d~~Df~Rp~~~~~~~~~~g---~~s~~~y~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l  707 (945)
                      .......+....  .......+|   ..+..++.-+.+. +.+.+..  +.......+..|||+.|++..++.....+.+
T Consensus       829 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a--l~~agl~~~did~~~~Hq~~~~i~~~~~~~l  904 (979)
T 3tsy_A          829 AAQTFIPNSAGA--IAGNLREVGLTFHLWPNVPTLISENVEKCLTQA--FDPLGISDWNSLFWIAHPGGPAILDAVEAKL  904 (979)
T ss_dssp             EEEEECTTCTTS--EEEEEETTEEEEEECTTHHHHHHHHHHHHHHHH--HGGGTCCCGGGSEEEECCSCHHHHHHHHHHH
T ss_pred             eeeEEecCchhh--eEEEEecCceEEEEchHHHHHHHHHHHHHHHHH--HhhcCCCCcccceEEECCCChHHHHHHHHHc
Confidence            011111111100  000000001   0111111111110 0111111  2223445566788999999977654444443


Q ss_pred             hhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEE---------EEE
Q psy11265        708 KNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRI---------GLF  778 (945)
Q Consensus       708 ~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI---------~l~  778 (945)
                                       .++    ..|+..+...-.+.||+++||++++|..+++..    .+| +||         +++
T Consensus       905 -----------------gl~----~~k~~~~~~~l~~~GNtssasi~~~L~~~~~~~----~~G-~~v~~g~~~~~~ll~  958 (979)
T 3tsy_A          905 -----------------NLD----KKKLEATRHVLSEYGNMSSACVLFILDEMRKKS----LKG-ERATTGEGLDWGVLF  958 (979)
T ss_dssp             -----------------TCC----TTTTHHHHHHHHHHCBCTTHHHHHHHHHHHHHH----HHT-TCSBTTTTCSEEEEE
T ss_pred             -----------------CCC----hHHHHHHHHHHHHcCCcchhhHHHHHHHHHhhh----ccc-ccccCCCCcceeEEE
Confidence                             122    245666544458999999999999999998742    267 776         999


Q ss_pred             ecCCCcccccccc
Q psy11265        779 SYGSDNIKALFRR  791 (945)
Q Consensus       779 s~GsG~~~~~~~~  791 (945)
                      +||+|......-.
T Consensus       959 ~~G~G~t~~~~~l  971 (979)
T 3tsy_A          959 GFGPGLTIETVVL  971 (979)
T ss_dssp             EECGGGEEEEEEE
T ss_pred             EeCCchHHHHHHH
Confidence            9999976554433

>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2

Probab=98.69  E-value=2.8e-09  Score=117.11  Aligned_cols=249  Identities=14%  Similarity=0.084  Sum_probs=143.9

Q ss_pred             cccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-------------------------
Q psy11265        494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-------------------------  548 (945)
Q Consensus       494 vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-------------------------  548 (945)
                      ++|.+++.|+|..+++.+++++..+.+++++....|.+++.+++.+|+...|++.                         
T Consensus         2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~a~~~al~~ag~~~~~id~vi~~~~~   81 (322)
T 1ub7_A            2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATNT   81 (322)
T ss_dssp             CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECSS
T ss_pred             cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCC
Confidence            6899999999999999999999888888888888999999999999999999988                         


Q ss_pred             ---------------cCcchhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-cccccc
Q psy11265        549 ---------------LSIQCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YNDFIS  609 (945)
Q Consensus       549 ---------------Lsl~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~~~~  609 (945)
                                     |++++....+ .+|.++..   |+..|.       .++..+.-...||..+  +.++. +.|  .
T Consensus        82 ~~~~~~~~a~~v~~~lgl~~~~~~v~~aCas~~~---al~~A~-------~~i~~g~~~~vlv~g~e~~s~~~~~~d--~  149 (322)
T 1ub7_A           82 PDALFPDTAALVQARFGLKAFAYDLLAGCPGWIY---ALAQAH-------ALVEAGLAQKVLAVGAEALSKIIDWND--R  149 (322)
T ss_dssp             CSEEESCHHHHHHHHTTCCCEEEEEECSTTHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECGGGTSCTTC--H
T ss_pred             CCCCCCcHHHHHHHHhCCCCEEEeeCccchHHHH---HHHHHH-------HHHHcCCCCEEEEEEechhccccChhh--c
Confidence                           1111111111 37887774   555554       4455443334577554  44321 111  1


Q ss_pred             ccCcccccchhhhH--hhh---cccC---cccccccccccc--------cccc--ccccccccccchhchHHhhhhhhHH
Q psy11265        610 ATDRSQYEGAEAFA--HIK---NLED---TYFNRDIEQYFM--------SHNL--YRTRLAYNDFISATDRTEYEGAEAF  671 (945)
Q Consensus       610 ~~E~tqgaGAvA~l--~i~---~~~~---~~~s~d~~Df~R--------p~~~--~~~~~~~g~~s~~~y~~~~~~~~a~  671 (945)
                      ......|.||+|++  ...   .+..   ..+.. ..|.++        |...  ......+|......+.+.+.  .+.
T Consensus       150 ~~~~~~GdGA~A~vL~~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~i  226 (322)
T 1ub7_A          150 ATAVLFGDGGGAAVVGKVREGYGFRSFVLGADGT-GAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMN--TAT  226 (322)
T ss_dssp             HHHTTBCCEEEEEEEECCCTTCEEEEEEEEECGG-GCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHH--HHH
T ss_pred             ccceeeccccEEEEEEecCCCCceeEEEEEEecC-CCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHH--HHH
Confidence            11235688888876  110   1100   01110 112221        2100  00112233333333333322  133


Q ss_pred             HhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccch
Q psy11265        672 AHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTP  751 (945)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTa  751 (945)
                      +..  +.......+..||++.|.+.+++.. ++...+                ..+.    .++. +.  -.++||+++|
T Consensus       227 ~~a--l~~agl~~~did~~~~H~~~~~~~d-~~~~~l----------------g~~~----~~~~-~~--~~~~Gh~~~A  280 (322)
T 1ub7_A          227 LEA--IEKAGLTPEDIRLFVPHQANLRIID-AARERL----------------GLPW----ERVA-VN--VDRYGNTSTA  280 (322)
T ss_dssp             HHH--HHHHTCCGGGCSEEEECCSCHHHHH-HHHHTT----------------TCCG----GGBC-CC--HHHHCBCGGG
T ss_pred             HHH--HHHcCCCHHHCCEEEEcCCCHHHHH-HHHHHc----------------CCCH----HHHH-HH--HHhhCcHHHH
Confidence            333  1122334455678999988866533 333221                1111    1232 11  2589999999


Q ss_pred             hHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        752 SLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       752 Slyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      |.+++|..+|++....  +| +++++.+||.|...
T Consensus       281 s~~~~l~~~l~~g~~~--~g-~~~l~~~~G~G~~~  312 (322)
T 1ub7_A          281 SIPLALKEAVDAGRIR--EG-DHVLLVSFGAGLTW  312 (322)
T ss_dssp             HHHHHHHHHHHHTSSC--TT-CEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHhCCCC--CC-CEEEEEEEChhhee
Confidence            9999999999875322  79 99999999998654

>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2

Probab=98.66  E-value=2e-09  Score=121.73  Aligned_cols=259  Identities=11%  Similarity=0.028  Sum_probs=141.9

Q ss_pred             ccccccceeeccccccchhHhhhhcCcC------c---ccccccccccccccCCC-----------------cchhhhhh
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVS------A---GKYTIGLGQAKMGFCSD-----------------LEDINSIC  546 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d------~---gKy~~Glgq~~msv~~~-----------------~EDivTma  546 (945)
                      .++|.+++.|+|..+++.++|++..+..      .   .++....|.+++.++.+                 .|+...||
T Consensus         9 m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~la   88 (382)
T 1u0m_A            9 MATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRV   88 (382)
T ss_dssp             -CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHHHH
Confidence            4899999999999999999998875432      1   23445567777777766                 78888898


Q ss_pred             hc---------------------------------------cCcch--hhHHH--HHHHHhHHHHHHHHhCccccCCCcc
Q psy11265        547 LT---------------------------------------LSIQC--YLGAL--DACYQGYRAKAAKLTGKELSLGDFD  583 (945)
Q Consensus       547 ~~---------------------------------------Lsl~~--~~~~l--daCy~~~~~~~al~~a~~~~l~~~~  583 (945)
                      +.                                       |+++.  ....+  .+|.++..   |+..|.       +
T Consensus        89 ~~Aa~~aL~~agl~~~~id~vi~~t~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~---Al~~A~-------~  158 (382)
T 1u0m_A           89 PAVIQRALDDAELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGA---AINRAH-------D  158 (382)
T ss_dssp             HHHHHHHHHHHTCCGGGCSEEEEECSSSCCSSCHHHHHHHHTTCCTTCEEEEECSCGGGHHHH---HHHHHH-------H
T ss_pred             HHHHHHHHHHhCCCHHHCCEEEEEecCCCCCCcHHHHHHHHhCCCCCcceEEccCCcCHHHHH---HHHHHH-------H
Confidence            87                                       33322  22222  48888774   555555       5


Q ss_pred             eeeecCCcceEEEec--cccc-cccccccc---cCcccccchhhhH--hhhc----ccC-ccc-ccccc--ccccccccc
Q psy11265        584 AVLFHTPYCKLVQKS--LARL-AYNDFISA---TDRSQYEGAEAFA--HIKN----LED-TYF-NRDIE--QYFMSHNLY  647 (945)
Q Consensus       584 ~v~~~~p~~kLV~as--~ary-~~~~~~~~---~E~tqgaGAvA~l--~i~~----~~~-~~~-s~d~~--Df~Rp~~~~  647 (945)
                      ++..+.-...||+.+  ..+. ...|-...   .....|.||+|++  .-..    +.. +.. ..|..  ++|+... .
T Consensus       159 ~i~~g~~~~vLv~g~e~~s~~~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~-~  237 (382)
T 1u0m_A          159 FCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDWIMYDVKA-T  237 (382)
T ss_dssp             HHHHSTTCEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETTTCSEEEEEEEEEEECSSCTTTEEEEEET-T
T ss_pred             HHHcCCCCEEEEEEEeccchhcCcccCCHHHhhccchhcCCcEEEEEeccCCCCcEEEEeeeEecCChHHhcCceecC-C
Confidence            555554344577665  3332 11110000   0345688998876  1111    111 010 11111  1222200 0


Q ss_pred             cccccccccchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcc
Q psy11265        648 RTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHS  727 (945)
Q Consensus       648 ~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~  727 (945)
                      ......+...-..+.+.+  + +.+..  +.......+..|||+.|++.+++.....+.+                 .++
T Consensus       238 g~~~~~~~~v~~~~~~~~--~-~i~~a--L~~agl~~~dId~v~~H~~~~~i~d~~~~~l-----------------gl~  295 (382)
T 1u0m_A          238 GFHFLLDKRVPATMEPLA--P-ALKEL--AGEHGWDASDLDFYIVHAGGPRILDDLSTFL-----------------EVD  295 (382)
T ss_dssp             EEEEEECTTTGGGHHHHH--H-HHHHH--HHTTSCCSSCCSCCEEECSHHHHHHHHHHHS-----------------CSC
T ss_pred             ceEEEeCcHHHHHHHHHH--H-HHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHc-----------------CCC
Confidence            000001111111111110  0 11111  1222334455688999988866543222211                 122


Q ss_pred             hHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcccccccc
Q psy11265        728 KQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRR  791 (945)
Q Consensus       728 ~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~~~~~~  791 (945)
                          ..|+.++...-.++||+++||++++|..++++....  +| ++|++++||.|......-.
T Consensus       296 ----~~k~~~s~~~~~~~Gnt~sAsi~~~L~~~~~~g~~~--~G-d~vll~~~G~G~t~~~~vl  352 (382)
T 1u0m_A          296 ----PHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVE--EG-ARGLLAGFGPGITAEMSLG  352 (382)
T ss_dssp             ----GGGGHHHHHHHHHTCBCTTHHHHHHHHHHHHSCCCC--SS-CCCEEEEEETTTEEEEEEE
T ss_pred             ----HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHhcCCC--CC-CEEEEEEEcccceeEEEEE
Confidence                135555444558999999999999999999875322  89 9999999999976655443

>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*

Probab=98.64  E-value=1.5e-08  Score=113.68  Aligned_cols=141  Identities=13%  Similarity=0.018  Sum_probs=103.4

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCc--cHHHHHHHHHHHHHHhccCCHHhhccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLE--DINSICLTVVSNLMKRYELDYAQIGQLLQ   84 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~E--Divsla~~a~~~Ll~~~~~~~~~Ig~l~~   84 (945)
                      ++|+|.++..|+|...+.-++++.  +++..+.....|+.++.++++.|  +...||+.|++++|++.+++|++|+.| +
T Consensus         4 ~~v~I~g~g~ylP~~~~~~~~~~~--~~~~~~~~~~tGi~~r~~a~~~e~~~~~~La~~Aa~~aL~~ag~~~~dId~v-i   80 (357)
T 3s3l_A            4 ENLFVSGVAAWLPPLSTAQDAVMA--GLLDPARSKLRGIESVTVASDAEEDAPPRMAARAARAALGRGDVDPADVSLV-L   80 (357)
T ss_dssp             SSCEEEEEEEECCCEEEHHHHHHT--TSSCHHHHHHHCCCEEECCCSSGGGSHHHHHHHHHHHHHHHTTCCGGGEEEE-E
T ss_pred             CceEEEEEEEECCCCCCHHHHHHh--cCCcHHHHHHcCceEEEecCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-E
Confidence            579999999999996655555553  45554445678999999999888  999999999999999999999999998 8


Q ss_pred             ccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCc--ceee
Q psy11265         85 VESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTL--KTLV  162 (945)
Q Consensus        85 v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~--~~LV  162 (945)
                      ++|...   ..-|.... .......++.. ++        .++++.++|.|++.| |..|..+|+  ++  +..  .+||
T Consensus        81 ~~t~~~---~~~d~~~~-a~~v~~~lG~~-~~--------~~~~v~~aC~~~~~a-l~~A~~~i~--sg--~~~~~~vLv  142 (357)
T 3s3l_A           81 HSSLWF---QGIDLWPA-ASYVAHEAVGR-HV--------PAFGLAQRCNGGMGA-IELAGAYLG--SG--IGAGHAALL  142 (357)
T ss_dssp             EECSSC---CSSSSSCH-HHHHHHHHTCS-SS--------CEEEEECGGGHHHHH-HHHHHHHHH--TT--SSSSSEEEE
T ss_pred             EEeccC---CCcccccH-HHHHHHHhCCC-CC--------cEEEEcCccHHHHHH-HHHHHHHHH--cC--CCCCCEEEE
Confidence            888720   01111111 11122334432 34        567888999999999 999999996  43  344  7898


Q ss_pred             -eccccc
Q psy11265        163 -TKLSDV  168 (945)
Q Consensus       163 -asdia~  168 (945)
                       ++|...
T Consensus       143 vg~e~~s  149 (357)
T 3s3l_A          143 TTGDRFA  149 (357)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence             888753

>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A

Probab=98.59  E-value=1.1e-08  Score=112.81  Aligned_cols=253  Identities=15%  Similarity=0.067  Sum_probs=142.2

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      ++++|.+++.|+|..+++.+++++..+.+.+++....|.+++.++.++|+...|++.                       
T Consensus        11 ~~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~id~vi~~t   90 (335)
T 1u6e_A           11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDGVIVTT   90 (335)
T ss_dssp             SCEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEEC
T ss_pred             CceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            468999999999999999999999877777777777888889999999999999988                       


Q ss_pred             -c------CcchhhHH-----------H-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--ccccc-ccc
Q psy11265        549 -L------SIQCYLGA-----------L-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLA-YND  606 (945)
Q Consensus       549 -L------sl~~~~~~-----------l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~-~~~  606 (945)
                       .      ++.+++..           + .+|.++..   |+..|.       .++..+.-...||+.+  +.++. ..+
T Consensus        91 ~~~~~~~~~~a~~v~~~lgl~~~~~~~v~~aC~s~~~---al~~A~-------~~i~~g~~~~vLv~g~e~~s~~~~~~d  160 (335)
T 1u6e_A           91 NTHFLQTPPAAPMVAASLGAKGILGFDLSAGAAGFGY---ALGAAA-------DMIRGGGAATMLVVGTEKLSPTIDMYD  160 (335)
T ss_dssp             SCCCCSSSCHHHHHHHHHTCTTSEEEEEECGGGHHHH---HHHHHH-------HHHHHTSCSSEEEEEEEECGGGCCTTC
T ss_pred             CCCCCCCChHHHHHHHHhCCCCCcEeeeccccHHHHH---HHHHHH-------HHHHcCCCCEEEEEEEcccccccCccc
Confidence             0      01111111           1 37888774   555555       5555554344577654  44321 111


Q ss_pred             cccccCcccccchhhhH--hhh-----ccc--C-cccccccc-----cccccccccc--ccccccccchhchHHhhhhhh
Q psy11265        607 FISATDRSQYEGAEAFA--HIK-----NLE--D-TYFNRDIE-----QYFMSHNLYR--TRLAYNDFISATDRTEYEGAE  669 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l--~i~-----~~~--~-~~~s~d~~-----Df~Rp~~~~~--~~~~~g~~s~~~y~~~~~~~~  669 (945)
                        .......|.||+|++  .-.     ...  . +..+..+.     +.|++.+...  ....+|......+.+.+.  .
T Consensus       161 --~~~~~~~gDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~  236 (335)
T 1u6e_A          161 --RGNCFIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMG--D  236 (335)
T ss_dssp             --TTTTTTBCEEEEEEEEEECSSCCBCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHH--H
T ss_pred             --cccceEeccccEEEEEEecCCCCeeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHH--H
Confidence              122345688888876  111     000  0 11100000     0111100000  001122211111111111  1


Q ss_pred             HHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCccc
Q psy11265        670 AFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMY  749 (945)
Q Consensus       670 a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~Y  749 (945)
                      +.+..  +.......+..||++.|.+++++.....+.+ .                +..+   .++-.+  + ++.||+.
T Consensus       237 ~i~~a--l~~agl~~~dId~~~~H~~~~~~~~~~~~~l-g----------------~~~~---~~~~~~--~-~~~Gnt~  291 (335)
T 1u6e_A          237 VGRRA--MDAAGVRPDQIDVFVPHQANSRINELLVKNL-Q----------------LRPD---AVVAND--I-EHTGNTS  291 (335)
T ss_dssp             HHHHH--HHHHTCCGGGCCEEEECCSCHHHHHHHHHHH-T----------------CCTT---CEECCT--H-HHHCBCG
T ss_pred             HHHHH--HHHcCCCHHHCCEEEECCCCHHHHHHHHHHc-C----------------CCch---hhhhhh--h-hhhCcHH
Confidence            22222  1222334455678999999977755433332 1                1110   022222  1 6789999


Q ss_pred             chhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        750 TPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       750 TaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      +||++++|..++.....  -+| +++++++||.|...
T Consensus       292 sAs~~~~L~~~~~~~~~--~~g-~~~l~~~~G~G~t~  325 (335)
T 1u6e_A          292 AASIPLAMAELLTTGAA--KPG-DLALLIGYGAGLSY  325 (335)
T ss_dssp             GGHHHHHHHHHHHHTSS--CTT-CEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHcCCC--CCC-CEEEEEEEehhhee
Confidence            99999999999986532  279 99999999998654

>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*

Probab=98.51  E-value=5.7e-08  Score=106.43  Aligned_cols=140  Identities=16%  Similarity=0.147  Sum_probs=108.8

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|+|.+|..|+|...+++++|++..+.+++++....|.+++.++.+.++...|++.|++++|++.+++|++|+.| .++
T Consensus         1 ~~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~v-i~g   79 (317)
T 1hnj_A            1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLI-VVA   79 (317)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-EEE
T ss_pred             CCcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEEecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            4689999999999999999999999888888888889999999999999999999999999999999999999987 777


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |..-   ..+.  ..........++... .        ..+.+..+|.+++.| |..|..+|+  ++  ....+|| ++|
T Consensus        80 ~~~~---~~~~--~~~a~~v~~~lgl~~-~--------~~~~v~~aCas~~~a-l~~A~~~i~--~g--~~~~vlv~g~e  140 (317)
T 1hnj_A           80 TTSA---THAF--PSAACQIQSMLGIKG-C--------PAFDVAAACAGFTYA-LSVADQYVK--SG--AVKYALVVGSD  140 (317)
T ss_dssp             CSCC---SCSS--SCHHHHHHHHHTCCS-S--------CEEEECCGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEE
T ss_pred             cCCC---CCCC--CcHHHHHHHHhCCCC-C--------eEEeeCcccHHHHHH-HHHHHHHHH--CC--CCCEEEEEEec
Confidence            7510   0110  111111223344431 1        336778899999999 899999996  33  4578888 777


Q ss_pred             c
Q psy11265        166 S  166 (945)
Q Consensus       166 i  166 (945)
                      .
T Consensus       141 ~  141 (317)
T 1hnj_A          141 V  141 (317)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2

Probab=98.48  E-value=7.6e-08  Score=106.71  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             CCCcccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccc
Q psy11265          4 QWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLL   83 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~   83 (945)
                      .++++|+|.+|..|+|...+++++|++..+.+.+++....|.+++.++.+.|+...|++.|++.+|++.++++++|+.| 
T Consensus         7 ~~~~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~v-   85 (339)
T 1mzj_A            7 PERRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLV-   85 (339)
T ss_dssp             CCCCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-
T ss_pred             CccCceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEEEeCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-
Confidence            3457799999999999999999999999888888888888999999999999999999999999999999999999988 


Q ss_pred             cccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-
Q psy11265         84 QVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-  162 (945)
Q Consensus        84 ~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-  162 (945)
                      .++|..-   ..+..+  ........|+..+ +        ..+.+..+|.+++.| |..|..+|+  ++  +...+|| 
T Consensus        86 i~gt~~~---~~~~p~--~a~~v~~~lgl~~-~--------~~~~v~~aCas~~~A-l~~A~~~i~--~G--~~~~vLv~  146 (339)
T 1mzj_A           86 VVSTMTN---FVHTPP--LSVAIAHELGADN-A--------GGFDLSAACAGFCHA-LSIAADAVE--SG--GSRHVLVV  146 (339)
T ss_dssp             EEECSCC---CCCSSC--HHHHHHHHHTCTT-C--------EEEEEECGGGHHHHH-HHHHHHHHH--HS--SCSCEEEE
T ss_pred             EEEecCC---CCCCCh--HHHHHHHHhCCCC-c--------cEEEccccchHHHHH-HHHHHHHHH--CC--CCCEEEEE
Confidence            7777610   111111  1112223344431 2        346778899999999 899999996  33  4578888 


Q ss_pred             ecccc
Q psy11265        163 TKLSD  167 (945)
Q Consensus       163 asdia  167 (945)
                      ++|.-
T Consensus       147 g~e~~  151 (339)
T 1mzj_A          147 ATERM  151 (339)
T ss_dssp             EEEEG
T ss_pred             EEccc
Confidence            87763

>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}

Probab=98.41  E-value=1.3e-07  Score=102.93  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=106.2

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|+|.+|..|+|+..++++++++..+.+++++....|..+..++.+ ++...|++.|++++|++.++++++|+.| .++
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~-~~~~~l~~~a~~~al~~ag~~~~~id~v-~~~   78 (309)
T 2ebd_A            1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKE-ETITYMATQAAKEALREANLSPEELDLI-ILA   78 (309)
T ss_dssp             CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECSS-CCHHHHHHHHHHHHHHHHTCCGGGCSEE-EEE
T ss_pred             CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeecCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            57899999999999999999999998888888776677777777766 9999999999999999999999999888 777


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |...   ..+-.+  ........++..| +        ..+.+..+|.+++.| |..|..+|+  ++  ....+|| ++|
T Consensus        79 ~~~~---~~~~~~--~a~~v~~~lgl~~-~--------~~~~v~~~C~s~~~a-l~~A~~~i~--~g--~~~~vlv~g~e  139 (309)
T 2ebd_A           79 TLTP---QKRFPS--TACLVQAQLKAKG-V--------YAFDISAACSGFIYA-LDIADSFIK--SG--KAKNVLVIGAE  139 (309)
T ss_dssp             CSSC---SSSSSC--HHHHHHHHHTCTT-C--------EEEEEECGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEE
T ss_pred             cCCC---CCCCCc--HHHHHHHHhCCCC-c--------eEEecCccchHHHHH-HHHHHHHHH--CC--CCCEEEEEEec
Confidence            7611   001001  1112223455444 2        346677899999999 899999996  33  4578888 777


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      .-
T Consensus       140 ~~  141 (309)
T 2ebd_A          140 KL  141 (309)
T ss_dssp             EG
T ss_pred             cc
Confidence            53

>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum}

Probab=98.40  E-value=1e-07  Score=107.10  Aligned_cols=144  Identities=13%  Similarity=0.066  Sum_probs=100.5

Q ss_pred             CCCCcccceeeeeeecCCccccHHHHHhhcC--CC--------cccchhccCCccccCCCCC------------------
Q psy11265          3 HQWPENVGILGIEFYFPSQYVDQTELEKHDQ--VS--------AGKYTIGLGQAKMGFCSDL------------------   54 (945)
Q Consensus         3 ~~~~~~VGI~ai~~y~p~~yvd~~~L~~~~g--v~--------~~Kyt~GLGq~~m~~~~~~------------------   54 (945)
                      .+++++|+|.+|..|+|...+++++|++..+  .+        ..++....|..+..++.+.                  
T Consensus         8 ~~~~~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~   87 (374)
T 2h84_A            8 YKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDV   87 (374)
T ss_dssp             ----CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHH
T ss_pred             ccCCCCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHH
Confidence            4577899999999999999999999998643  21        1233233444555555555                  


Q ss_pred             -----ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh
Q psy11265         55 -----EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK  129 (945)
Q Consensus        55 -----EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~  129 (945)
                           |+...||+.|++++|++.++++++|+.| .++|..     ... ...........|+..+.+        ..+++
T Consensus        88 ~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~v-i~~t~~-----~~~-~p~~a~~v~~~lGl~~~~--------~~~~v  152 (374)
T 2h84_A           88 NNQFKKVVPDLAQQACLRALKDWGGDKGDITHI-VSVTST-----GII-IPDVNFKLIDLLGLNKDV--------ERVSL  152 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEE-EEEESS-----CCC-SSCHHHHHHHHHTCCTTC--------EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeeC-----CCC-CCcHHHHHHHHcCcCCCC--------ceEEe
Confidence                 8899999999999999999999999988 777762     110 010111222445555544        45788


Q ss_pred             h-hhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        130 Y-STALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       130 k-~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      . .+|.|++.| |..|..+|+  +  ++...+|| ++|.
T Consensus       153 ~~~aCss~~~a-l~~A~~~i~--~--g~~~~vLv~g~e~  186 (374)
T 2h84_A          153 NLMGCLAGLSS-LRTAASLAK--A--SPRNRILVVCTEV  186 (374)
T ss_dssp             ESCGGGHHHHH-HHHHHHHHT--T--CTTCEEEEEEEEC
T ss_pred             cCCcCHHHHHH-HHHHHHHHH--c--CCCCEEEEEEEEe
Confidence            6 799999999 999999996  3  35678888 8775

>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A

Probab=98.36  E-value=1.7e-07  Score=106.33  Aligned_cols=141  Identities=11%  Similarity=0.067  Sum_probs=99.9

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCc---------ccchhccCCccccC-CCC----------------------C
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSA---------GKYTIGLGQAKMGF-CSD----------------------L   54 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~---------~Kyt~GLGq~~m~~-~~~----------------------~   54 (945)
                      +.++|.+|..|+|+..|++++|++..+.++         .+.....|..+..+ +.+                      .
T Consensus        31 ~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~~  110 (393)
T 1ted_A           31 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY  110 (393)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred             cccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHHh
Confidence            569999999999999999999999877653         23333344444445 443                      5


Q ss_pred             ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh-hhhh
Q psy11265         55 EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTA  133 (945)
Q Consensus        55 EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~-k~ac  133 (945)
                      |+...||+.|++++|++.++++++|+.| .++|..-      +............|+..+.+        ..+.+ ..+|
T Consensus       111 ~~~~~la~~Aa~~aL~~agl~~~~Id~v-i~~t~~~------~~~p~~a~~v~~~lGl~~~~--------~~~~v~~~aC  175 (393)
T 1ted_A          111 EHAVPLAVDVSKRALAGLPYRAAEIGLL-VLATSTG------FIAPGVDVAIVKELGLSPSI--------SRVVVNFMGC  175 (393)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGEEEE-EEEESSC------CCSSCHHHHHHHHHTCCTTC--------EEEEEESCGG
T ss_pred             hhHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEeCC------CccChHHHHHHHHcCcCCCc--------ceeEeccchh
Confidence            8999999999999999999999999988 7777611      11111111222345554433        33565 7899


Q ss_pred             hhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        134 LGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       134 yg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      .|++.| |..|..+|+  ++  +...+|| ++|..
T Consensus       176 as~~~A-l~~A~~~i~--~G--~~~~vLv~g~e~~  205 (393)
T 1ted_A          176 AAAMNA-LGTATNYVR--AH--PAMKALVVCIELC  205 (393)
T ss_dssp             GHHHHH-HHHHHHHHH--HS--TTCEEEEEEEEEC
T ss_pred             HHHHHH-HHHHHHHHH--cC--CCCEEEEEEEEec
Confidence            999999 899999996  33  4678888 88754

>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}

Probab=98.36  E-value=1e-07  Score=108.25  Aligned_cols=39  Identities=13%  Similarity=-0.017  Sum_probs=32.0

Q ss_pred             cccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCccc
Q psy11265        743 NLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIK  786 (945)
Q Consensus       743 ~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~~  786 (945)
                      ++.||+.+||++++|..+...    --+| ++|+|++||.|..-
T Consensus       346 ~~~GNtssAsipl~L~~~~~~----~~~G-d~vll~gfG~G~t~  384 (392)
T 3led_A          346 DDYANTSSAGSIIAFHKHQDD----MAQG-DLGLICSFGAGYSA  384 (392)
T ss_dssp             HHHCBCGGGHHHHHHHHCCTT----CCTT-CEEEEEEEETTTEE
T ss_pred             hhhCccHHHHHHHHHHHHhCC----CCCC-CEEEEEEEChhhEe
Confidence            789999999999999876322    1289 99999999999643

>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2

Probab=98.36  E-value=1.7e-07  Score=102.81  Aligned_cols=137  Identities=13%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             cceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCC
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESP   88 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te   88 (945)
                      ++|.+|..|+|...+++++|++..+.++.++....|.+++.++.+.++...|++.|++.+|++.++++++|+.| .++|.
T Consensus         2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~a~~~al~~ag~~~~~id~v-i~~~~   80 (322)
T 1ub7_A            2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAV-IVATN   80 (322)
T ss_dssp             CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEE-EEECS
T ss_pred             cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEcC
Confidence            68999999999999999999999888888888889999999999999999999999999999999999999888 77775


Q ss_pred             cccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         89 EEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        89 ~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      ..   ..+..+  ........++..+          ..+.+..+|.+++.| |..|..+|+  ++  ....+|| ++|.
T Consensus        81 ~~---~~~~~~--~a~~v~~~lgl~~----------~~~~v~~aCas~~~a-l~~A~~~i~--~g--~~~~vlv~g~e~  139 (322)
T 1ub7_A           81 TP---DALFPD--TAALVQARFGLKA----------FAYDLLAGCPGWIYA-LAQAHALVE--AG--LAQKVLAVGAEA  139 (322)
T ss_dssp             SC---SEEESC--HHHHHHHHTTCCC----------EEEEEECSTTHHHHH-HHHHHHHHH--TT--SCSEEEEEEEEC
T ss_pred             CC---CCCCCc--HHHHHHHHhCCCC----------EEEeeCccchHHHHH-HHHHHHHHH--cC--CCCEEEEEEech
Confidence            10   111111  1111223344322          235677899999999 899999996  33  4578888 7775

>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A

Probab=98.35  E-value=2.4e-07  Score=101.21  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=106.7

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|+|.+|..|+|+..+++++|++..+.+.+++..-.|..+..++.+.|+...|++.|++.+|++.++++++|+.| .++
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~v-i~~   79 (313)
T 1zow_A            1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIADAGIQPEDIDMI-IVA   79 (313)
T ss_dssp             CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-EEE
T ss_pred             CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEEecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEE
Confidence            4789999999999999999999998888888776667878788998999999999999999999999999999988 777


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |...   ..+..+  ........++..+ +        ..+.+..+|.++..| |..|..+|+  ++  ....+|| ++|
T Consensus        80 ~~~~---~~~~~~--~a~~v~~~lgl~~-~--------~~~~v~~aCas~~~a-l~~A~~~i~--~g--~~~~vLv~g~e  140 (313)
T 1zow_A           80 TATG---DMPFPT--VANMLQERLGTGK-V--------ASMDQLAACSGFMYS-MITAKQYVQ--SG--DYHNILVVGAD  140 (313)
T ss_dssp             CSSC---SCSSSC--HHHHHHHHHTCCS-C--------CEEEEECGGGHHHHH-HHHHHHHHH--TT--SCSCEEEEEEE
T ss_pred             cCCC---CCCCCc--HHHHHHHHhCCCC-C--------cEEEECCcCHHHHHH-HHHHHHHHH--CC--CCCEEEEEEEc
Confidence            6510   011111  0111223344332 2        235677899999999 888999996  33  4578888 777


Q ss_pred             c
Q psy11265        166 S  166 (945)
Q Consensus       166 i  166 (945)
                      .
T Consensus       141 ~  141 (313)
T 1zow_A          141 K  141 (313)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.35  E-value=7.4e-07  Score=102.53  Aligned_cols=67  Identities=10%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccc---hhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKF---KLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~---vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      +.|..|++|+|||+|++   +|++||++     +++|.+|.|.   ++++||.|+..|++||++.+.++|.+  +||..+
T Consensus       160 ~~p~~g~~V~v~y~g~~---~g~~f~~~-----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g  229 (457)
T 1kt0_A          160 SNPNEGATVEIHLEGRC---GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY--GFGEAG  229 (457)
T ss_dssp             CCCCTTCEEEEEEEEEE---TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGG--TTCSSC
T ss_pred             CCCCCCCEEEEEEEEEe---CCeEEecC-----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECccc--ccCCCC
Confidence            57999999999999999   79999973     6999999874   89999999999999999999999999  899754

>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2

Probab=98.32  E-value=1.2e-07  Score=107.12  Aligned_cols=146  Identities=10%  Similarity=-0.046  Sum_probs=101.1

Q ss_pred             CCCCC-cccceeeeeeecCCccccHHHHHhhcCCC------c---ccchhccCCccccCCCC-----------------C
Q psy11265          2 SHQWP-ENVGILGIEFYFPSQYVDQTELEKHDQVS------A---GKYTIGLGQAKMGFCSD-----------------L   54 (945)
Q Consensus         2 ~~~~~-~~VGI~ai~~y~p~~yvd~~~L~~~~gv~------~---~Kyt~GLGq~~m~~~~~-----------------~   54 (945)
                      ||..| |-++|.+|..|+|...|++++|++..+.+      .   .++....|..+..++.+                 .
T Consensus         2 ~~~~~~~m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~   81 (382)
T 1u0m_A            2 SHGGSGFMATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYE   81 (382)
T ss_dssp             --------CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHH
T ss_pred             CCCCCccceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHH
Confidence            56555 33999999999999999999999876543      1   22323345555566766                 7


Q ss_pred             ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh-hhhh
Q psy11265         55 EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTA  133 (945)
Q Consensus        55 EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~-k~ac  133 (945)
                      |+...||+.|++++|++.++++++|+.| .++|..     .. ............|+..+++        ..+++ ..+|
T Consensus        82 ~~~~~la~~Aa~~aL~~agl~~~~id~v-i~~t~~-----~~-~~p~~a~~v~~~lGl~~~~--------~~~~v~~~aC  146 (382)
T 1u0m_A           82 REAKSRVPAVIQRALDDAELLATDIDVI-IYVSCT-----GF-MMPSLTAWLINEMGFDSTT--------RQIPIAQLGC  146 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCSEE-EEECSS-----SC-CSSCHHHHHHHHTTCCTTC--------EEEEECSCGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHCCEE-EEEecC-----CC-CCCcHHHHHHHHhCCCCCc--------ceEEccCCcC
Confidence            8899999999999999999999999988 788761     11 1111111222445555544        45677 7899


Q ss_pred             hhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        134 LGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       134 yg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      .|++.| |..|..+|+  ++  +...+|| ++|..
T Consensus       147 ss~~~A-l~~A~~~i~--~g--~~~~vLv~g~e~~  176 (382)
T 1u0m_A          147 AAGGAA-INRAHDFCT--AY--PEANALIVACEFC  176 (382)
T ss_dssp             GHHHHH-HHHHHHHHH--HS--TTCEEEEEEEEEG
T ss_pred             HHHHHH-HHHHHHHHH--cC--CCCEEEEEEEecc
Confidence            999999 999999996  33  4578888 77754

>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}

Probab=98.30  E-value=2.8e-07  Score=101.80  Aligned_cols=138  Identities=13%  Similarity=0.097  Sum_probs=106.3

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |+|+|.+|..|+|...+++++|++..+.+.+++....|.+++.++.+ |+...|++.|++++|++.++  ++|+.| .++
T Consensus         4 m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~-~~~~~la~~Aa~~al~~ag~--~~id~v-i~~   79 (331)
T 2x3e_A            4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIAGD-LGSGDLALRAASAALASAGL--ERVDAV-VLA   79 (331)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEECCTT-CCHHHHHHHHHHHHHHHHTC--SCCSEE-EEE
T ss_pred             ceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEecCC-CCHHHHHHHHHHHHHHhCCc--ccCCEE-EEE
Confidence            68999999999999999999999998888888888889999999877 99999999999999999998  789887 777


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |..-   ..+..+  ........|+..+ +        ..+++..+|.|++.| |..|..+|+  ++  +...+|| ++|
T Consensus        80 t~~~---~~~~p~--~a~~v~~~lgl~~-~--------~~~~v~~aCas~~~A-l~~A~~~i~--~g--~~~~vLv~g~e  140 (331)
T 2x3e_A           80 TSTG---DFCCPA--TAPRVAARLGLVG-A--------LAFDLSAAATGFVYG-LASVGSLIS--AG--LADSALLVGVD  140 (331)
T ss_dssp             CSSC---SEEESC--SHHHHHHHTTCTT-S--------EEEEEECGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEE
T ss_pred             eCCC---CCCCCh--HHHHHHHHhCCCC-C--------cEEEEcCcChHHHHH-HHHHHHHHH--cC--CCCEEEEEEee
Confidence            7610   011111  0111123344331 2        346788899999999 999999996  33  4578888 887


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      ..
T Consensus       141 ~~  142 (331)
T 2x3e_A          141 TF  142 (331)
T ss_dssp             CG
T ss_pred             cc
Confidence            53

>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A

Probab=98.30  E-value=3.7e-07  Score=100.62  Aligned_cols=144  Identities=19%  Similarity=0.156  Sum_probs=108.9

Q ss_pred             CCCc-ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccc
Q psy11265          4 QWPE-NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQL   82 (945)
Q Consensus         4 ~~~~-~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l   82 (945)
                      .++| +|+|.+|..|+|...+++++|++..+.+..++....|..++.++.+.|+...|++.|++++|++.++++++|+.|
T Consensus         7 ~~~m~~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~id~v   86 (335)
T 1u6e_A            7 TSGARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDGV   86 (335)
T ss_dssp             CCCCSCEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred             ccCCCceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence            3445 699999999999999999999998888877776778888889999999999999999999999999999999988


Q ss_pred             ccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee
Q psy11265         83 LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV  162 (945)
Q Consensus        83 ~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV  162 (945)
                       .++|...-    +. ...........|+.. ++        ..+.+..+|.|++.| |..|..+|+  ++  ....+||
T Consensus        87 -i~~t~~~~----~~-~~~~a~~v~~~lgl~-~~--------~~~~v~~aC~s~~~a-l~~A~~~i~--~g--~~~~vLv  146 (335)
T 1u6e_A           87 -IVTTNTHF----LQ-TPPAAPMVAASLGAK-GI--------LGFDLSAGAAGFGYA-LGAAADMIR--GG--GAATMLV  146 (335)
T ss_dssp             -EEECSCCC----CS-SSCHHHHHHHHHTCT-TS--------EEEEEECGGGHHHHH-HHHHHHHHH--HT--SCSSEEE
T ss_pred             -EEEcCCCC----CC-CChHHHHHHHHhCCC-CC--------cEeeeccccHHHHHH-HHHHHHHHH--cC--CCCEEEE
Confidence             78776110    00 000111112334432 12        346777899999999 899999996  33  4578888


Q ss_pred             -ecccc
Q psy11265        163 -TKLSD  167 (945)
Q Consensus       163 -asdia  167 (945)
                       ++|..
T Consensus       147 ~g~e~~  152 (335)
T 1u6e_A          147 VGTEKL  152 (335)
T ss_dssp             EEEEEC
T ss_pred             EEEccc
Confidence             77753

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=98.24  E-value=4.7e-07  Score=113.78  Aligned_cols=144  Identities=11%  Similarity=-0.030  Sum_probs=108.7

Q ss_pred             CcccceeeeeeecCCccccHHHHHhh---cCCCccc---------chhccCCccccCCCCCc------------------
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKH---DQVSAGK---------YTIGLGQAKMGFCSDLE------------------   55 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~---~gv~~~K---------yt~GLGq~~m~~~~~~E------------------   55 (945)
                      .++|+|.+|..|+|..+|+++||+++   .+.++..         +....|..++.++.+.|                  
T Consensus       601 ~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~~~~~~~~~~~~~~~~  680 (979)
T 3tsy_A          601 KGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNI  680 (979)
T ss_dssp             CSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHCHHHHSSSSCCHHH
T ss_pred             cCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhhcCcccccccCCCHHH
Confidence            35799999999999999999999999   6777654         55556778888888776                  


Q ss_pred             -------cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhh
Q psy11265         56 -------DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALD  128 (945)
Q Consensus        56 -------Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e  128 (945)
                             +...||+.|++++|++.++++++|+.| +++|-     .. .............|+..+.       ...+++
T Consensus       681 r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId~i-i~~t~-----~~-~~~p~~a~~v~~~lGl~~~-------~~~~~~  746 (979)
T 3tsy_A          681 RQEIITAEVPKLGKEAALKALKEWGQPKSKITHL-VFCTT-----SG-VEMPGADYKLANLLGLEPS-------VRRVML  746 (979)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEE-EEEES-----SC-CCSSCHHHHHHHHHTCCTT-------CEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEE-EEEee-----CC-CCCCcHHHHHHHHcCCCcc-------cEEEee
Confidence                   588899999999999999999999998 88873     10 1111111122244554332       125678


Q ss_pred             hhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccccc
Q psy11265        129 KYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSDV  168 (945)
Q Consensus       129 ~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia~  168 (945)
                      +..||.|++.| |..|..+|+  +  ++.+.+|| ++|...
T Consensus       747 v~~aCsg~~~A-l~~A~~~i~--s--G~~~~vLvvg~e~~~  782 (979)
T 3tsy_A          747 YHQGCYAGGTV-LRTAKDLAE--N--NAGARVLVVCSEITV  782 (979)
T ss_dssp             ESCCTTHHHHH-HHHHHHHHH--T--STTCEEEEEEEECTT
T ss_pred             eccccHhHHHH-HHHHHHHHH--h--CCCCEEEEEEEEecc
Confidence            88999999999 999999997  4  35689999 998743

>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A

Probab=98.22  E-value=6.3e-07  Score=101.62  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=103.3

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhc----CCCc--------ccchhccCCccccCCCCCc------------------
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHD----QVSA--------GKYTIGLGQAKMGFCSDLE------------------   55 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~----gv~~--------~Kyt~GLGq~~m~~~~~~E------------------   55 (945)
                      +.+|.|.+|..|+|+..|+|+||+++-    +-+.        .+.....|.++..++.+.|                  
T Consensus         8 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~   87 (387)
T 3oit_A            8 DGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEMLSAHPEFVDRDAPSLDA   87 (387)
T ss_dssp             SSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESCCHHHHHHCGGGTCTTSCCHHH
T ss_pred             CCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeecCHHHhccCccccccCCCCHHH
Confidence            456999999999999999999999873    1121        1333456888888888866                  


Q ss_pred             -------cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhh
Q psy11265         56 -------DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALD  128 (945)
Q Consensus        56 -------Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e  128 (945)
                             +...||+.|++++|++.++++++|+.| +++|..     ... ...........|+..+..       .++++
T Consensus        88 r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~l-i~~t~t-----~~~-~p~~a~~v~~~LGl~~~~-------~~~~~  153 (387)
T 3oit_A           88 RLDIAADAVPELAAEAAKKAIAEWGRPAADITHL-VVTTNS-----GAH-VPGVDFRLVPLLGLRPSV-------RRTML  153 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEE-EEEESS-----CCE-ESCHHHHHHHHHTCCTTC-------EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeeC-----CCC-cccHHHHHHHHhCCCCCc-------ceeeE
Confidence                   789999999999999999999999998 888771     100 000111112334443322       24678


Q ss_pred             hhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        129 KYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       129 ~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      +..+|.|++.| |..|..+|+  +  ++.+.+|| ++|.
T Consensus       154 ~~~~C~~~~~a-l~~A~~~i~--s--g~~~~vLvvg~E~  187 (387)
T 3oit_A          154 HLNGCFAGCAA-LRLAKDLAE--N--SRGARVLVVAAEL  187 (387)
T ss_dssp             ECCGGGHHHHH-HHHHHHHHH--S--STTCEEEEEEEEC
T ss_pred             ECchhHHHHHH-HHHHHHHHh--c--CCCCEEEEEEEec
Confidence            89999999999 999999996  3  35688998 7763

>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A

Probab=98.19  E-value=6.6e-07  Score=101.67  Aligned_cols=141  Identities=10%  Similarity=-0.034  Sum_probs=102.1

Q ss_pred             cccceeeeeeecCCccccHHHHHhhc----CCCc--------ccchhccCCccccCCCCCc-------------------
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHD----QVSA--------GKYTIGLGQAKMGFCSDLE-------------------   55 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~----gv~~--------~Kyt~GLGq~~m~~~~~~E-------------------   55 (945)
                      ..|.|.+|..|+|+..|+++||+++-    +-+.        .+.....|-++..++.+.|                   
T Consensus        15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~r   94 (393)
T 3ov2_A           15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASFDDR   94 (393)
T ss_dssp             SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSSSSCCHHHH
T ss_pred             CCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccCCCCCHHHH
Confidence            56999999999999999999999972    2221        1244456788888887765                   


Q ss_pred             ------cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh
Q psy11265         56 ------DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK  129 (945)
Q Consensus        56 ------Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~  129 (945)
                            +...||+.|++++|++.++++++|+.| +++|..     ... ...........|+..+.       ..+++++
T Consensus        95 ~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~v-i~~t~t-----~~~-~p~~a~~v~~~LGl~~~-------~~~~~~v  160 (393)
T 3ov2_A           95 QDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHL-VFCSIS-----GID-MPGADYRLATLLGLPLT-------VNRLMIY  160 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEE-EEEESS-----CCC-BSCHHHHHHHHHTCCTT-------SEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEeC-----CCC-CCCHHHHHHHHcCCCCC-------cceeeEE
Confidence                  689999999999999999999999998 888771     100 11111111233444322       2246788


Q ss_pred             hhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        130 YSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       130 k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      ..+|.|++.| |..|..+|+  +  ++.+.+|| ++|.
T Consensus       161 ~~~C~g~~~a-l~~A~~~i~--s--g~~~~vLvvg~E~  193 (393)
T 3ov2_A          161 SQACHMGAAM-LRIAKDLAE--N--NRGARVLVVACEI  193 (393)
T ss_dssp             SCCTTHHHHH-HHHHHHHHH--H--STTCEEEEEEEEC
T ss_pred             cCccHHHHHH-HHHHHHHHH--c--CCCCEEEEEEEec
Confidence            9999999999 999999996  3  35688898 7763

>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A

Probab=98.18  E-value=5.7e-07  Score=101.98  Aligned_cols=255  Identities=13%  Similarity=0.049  Sum_probs=136.4

Q ss_pred             ccccccccceeeccccccchhHhhhhcC-c-Ccc----------cccccccccccccCCCcc------------------
Q psy11265        491 PENVGILGIEFYFPSQYVDQTELEKHDQ-V-SAG----------KYTIGLGQAKMGFCSDLE------------------  540 (945)
Q Consensus       491 ~~~vGI~ai~~Y~P~~~l~~~el~~~~g-~-d~g----------Ky~~Glgq~~msv~~~~E------------------  540 (945)
                      +..+.|.+++.|+|..++++++++++.+ + .++          ++....|.+++.++.+.|                  
T Consensus         8 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~   87 (387)
T 3oit_A            8 DGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEMLSAHPEFVDRDAPSLDA   87 (387)
T ss_dssp             SSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESCCHHHHHHCGGGTCTTSCCHHH
T ss_pred             CCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeecCHHHhccCccccccCCCCHHH
Confidence            3579999999999999999999998741 1 111          344568889999988876                  


Q ss_pred             -------hhhhhhhc---------------------------------------cCcchhh---HHH-HHHHHhHHHHHH
Q psy11265        541 -------DINSICLT---------------------------------------LSIQCYL---GAL-DACYQGYRAKAA  570 (945)
Q Consensus       541 -------DivTma~~---------------------------------------Lsl~~~~---~~l-daCy~~~~~~~a  570 (945)
                             +...||+.                                       |++...+   ..+ .+|.++.   .|
T Consensus        88 r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~p~~a~~v~~~LGl~~~~~~~~~~~~~C~~~~---~a  164 (387)
T 3oit_A           88 RLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGC---AA  164 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCEESCHHHHHHHHHTCCTTCEEEEEECCGGGHHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCCCCcccHHHHHHHHhCCCCCcceeeEECchhHHHH---HH
Confidence                   68888887                                       4444322   111 4898888   46


Q ss_pred             HHhCccccCCCcceeeecCCcceEEEec--cc-ccc-cccc-c--cccCcccccchhhhH--h--------hhcccC-cc
Q psy11265        571 KLTGKELSLGDFDAVLFHTPYCKLVQKS--LA-RLA-YNDF-I--SATDRSQYEGAEAFA--H--------IKNLED-TY  632 (945)
Q Consensus       571 l~~a~~~~l~~~~~v~~~~p~~kLV~as--~a-ry~-~~~~-~--~~~E~tqgaGAvA~l--~--------i~~~~~-~~  632 (945)
                      +..|.       +++..+.....||+.+  .+ ++. ..|- +  .......|+||+|++  .        +.++.+ +.
T Consensus       165 l~~A~-------~~i~sg~~~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~  237 (387)
T 3oit_A          165 LRLAK-------DLAENSRGARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQ  237 (387)
T ss_dssp             HHHHH-------HHHHSSTTCEEEEEEEECGGGTCCCCCSSSCHHHHHHHHBCCEEEEEEEESSCCSSCCCCEEEEEEEE
T ss_pred             HHHHH-------HHHhcCCCCEEEEEEEeccchhccCccccchHhhhcccccccceEEEEEecCCCcccCCceEEEeccc
Confidence            66665       5666665455688765  43 432 2220 0  001223688998876  1        001110 10


Q ss_pred             cc-ccccccccccccccccccccc---cchhchH---HhhhhhhHHHhhhhcccc----cCCcchHH-HHHHhCCCccch
Q psy11265        633 FN-RDIEQYFMSHNLYRTRLAYND---FISATDR---TEYEGAEAFAHIKNLEDT----YFNRDIEQ-YFMSHNRTEYEG  700 (945)
Q Consensus       633 ~s-~d~~Df~Rp~~~~~~~~~~g~---~s~~~y~---~~~~~~~a~~~~~~~~~~----~~~~~~~~-~~~~H~p~~~m~  700 (945)
                      .. .+..+.+..     ....+|.   ++..++.   +.+.  .+++..  ++..    ... ++.+ +|+.|++..++-
T Consensus       238 ~~~p~~~~~~~~-----~~~~~g~~~~~~~~v~~~~~~~~~--~~~~~~--L~~~~~~~gl~-d~d~~~~v~Hq~n~~il  307 (387)
T 3oit_A          238 TIIPESDHALNM-----RFTERRLDGVLGRQVPGLIGDNVE--RCLLDM--FGPLLGGDGGG-GWNDLFWAVHPGSSTIM  307 (387)
T ss_dssp             EECTTCTTSEEE-----EECSSSEEEEECTTHHHHHHHHHH--HHHHHH--TGGGCC-------GGGSEEEECCCCHHHH
T ss_pred             EEeCCChhhccc-----eeecCCeEEEECcHHHHHHHHHHH--HHHHHH--HHhhcccCCCC-cccccEEEECCCCHHHH
Confidence            00 000000000     0001111   1112221   1111  122222  1111    111 1211 789998886654


Q ss_pred             HHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCC-----CcEE
Q psy11265        701 AEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQG-----MSRI  775 (945)
Q Consensus       701 ~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G-----~~rI  775 (945)
                      ....+.|                 .++    ..|+..+-..-++.|||.+||+++.|..+++.. .+  +|     -++|
T Consensus       308 ~~v~~~L-----------------gl~----~ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~-~~--~G~~g~~~d~v  363 (387)
T 3oit_A          308 DQVDAAL-----------------GLE----PGKLAASRRVLSDYGNMSGATVIFALDELRRQR-KE--AAAAGEWPELG  363 (387)
T ss_dssp             HHHHHHH-----------------TCC----TTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHC-------------CCEE
T ss_pred             HHHHHHc-----------------CCC----HHHHHHHHHHHHHhCchHHhHHHHHHHHHHHhh-hc--cCCCCCCCCEE
Confidence            3333332                 222    134554433347899999999999999988752 11  33     0699


Q ss_pred             EEEecCCCcccccc
Q psy11265        776 GLFSYGSDNIKALF  789 (945)
Q Consensus       776 ~l~s~GsG~~~~~~  789 (945)
                      ++++||.|....-.
T Consensus       364 ll~~fG~G~t~~~~  377 (387)
T 3oit_A          364 VMMAFGPGMTVDAM  377 (387)
T ss_dssp             EEEEEETTTEEEEE
T ss_pred             EEEEecccceeeee
Confidence            99999999765543

>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A

Probab=98.10  E-value=5e-07  Score=102.22  Aligned_cols=141  Identities=8%  Similarity=-0.049  Sum_probs=100.6

Q ss_pred             cccceeeeeeecCCccccHHHHHhhc-C-C--C--------cccchhccCCccccCCCCC--------------------
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHD-Q-V--S--------AGKYTIGLGQAKMGFCSDL--------------------   54 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~-g-v--~--------~~Kyt~GLGq~~m~~~~~~--------------------   54 (945)
                      ++++|.+|..|+|...|+++||++.. + .  +        ..+.....|.++..++.+.                    
T Consensus        11 ~~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~p~~~~~~~~~~~~r   90 (387)
T 3a5r_A           11 KLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNVR   90 (387)
T ss_dssp             CCEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECSCCHHHHHHCHHHHSSSSSCHHHH
T ss_pred             CCcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEecChhhhccCcccccccCCCHHHH
Confidence            35899999999999999999999864 2 2  1        1244345666666677654                    


Q ss_pred             -----ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh
Q psy11265         55 -----EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK  129 (945)
Q Consensus        55 -----EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~  129 (945)
                           |+...||+.|++++|++.++++++|+.| +++|..     . +............|+..+.+       .+.+++
T Consensus        91 ~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~l-i~~t~~-----~-~~~p~~a~~v~~~lGl~~~~-------~~~~~v  156 (387)
T 3a5r_A           91 HKMQVKGVAELGKEAALKAIKEWGQPKSKITHL-IVCCLA-----G-VDMPGADYQLTKLLDLDPSV-------KRFMFY  156 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEE-EEEESS-----C-CEESCHHHHHHHHTTCCTTC-------EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecC-----C-CCCCcHHHHHHHHcCcCCCc-------ceeeeE
Confidence                 7899999999999999999999999988 888761     1 00010111122334443332       125788


Q ss_pred             hhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        130 YSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       130 k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      ..+|.|++.| |..|..+|+  ++  +...+|| ++|.
T Consensus       157 ~~aC~s~~~a-l~~A~~~i~--~g--~~~~vLvvg~e~  189 (387)
T 3a5r_A          157 HLGCYAGGTV-LRLAKDIAE--NN--KGARVLIVCSEM  189 (387)
T ss_dssp             SCCTTHHHHH-HHHHHHHHH--HS--TTCEEEEEEEEC
T ss_pred             ccccHHHHHH-HHHHHHHHH--hC--CCCEEEEEEEec
Confidence            8899999999 899999996  33  5678898 8774

>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A

Probab=98.05  E-value=9e-07  Score=101.17  Aligned_cols=144  Identities=9%  Similarity=-0.042  Sum_probs=99.7

Q ss_pred             CCCcccceeeeeeecCCccccHHHHHhhc-C-C--C--------cccchhccCCccccCCCCC-----------------
Q psy11265          4 QWPENVGILGIEFYFPSQYVDQTELEKHD-Q-V--S--------AGKYTIGLGQAKMGFCSDL-----------------   54 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~yvd~~~L~~~~-g-v--~--------~~Kyt~GLGq~~m~~~~~~-----------------   54 (945)
                      ..+.+++|.+|..|+|...|+++||++.- . .  +        ..+.....|.++..++.+.                 
T Consensus        34 ~~~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~  113 (413)
T 1xes_A           34 RADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPS  113 (413)
T ss_dssp             SCCSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCC
T ss_pred             cCCCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCC
Confidence            34567999999999999999999999863 2 1  1        1233334455555565443                 


Q ss_pred             ---------ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchh
Q psy11265         55 ---------EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQG  125 (945)
Q Consensus        55 ---------EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~  125 (945)
                               |+...||+.|++++|++.++++++|+.| +++|..     . +............|+..+..       .+
T Consensus       114 ~~~r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id~l-i~~t~~-----~-~~~p~~a~~v~~~lGl~~~~-------~~  179 (413)
T 1xes_A          114 LDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHL-IFCSTT-----T-PDLPGADFEVAKLLGLHPSV-------KR  179 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEE-EEEESC-----C-CEESCHHHHHHHHHTCCTTC-------EE
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEEeC-----C-CccchHHHHHHHHcCcCCcc-------ch
Confidence                     5899999999999999999999999988 888761     1 00000111222334443322       12


Q ss_pred             hhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        126 ALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       126 ~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .+++..+|.|++.| |..|..+|+  +  ++...+|| ++|.
T Consensus       180 ~~~v~~aCas~~~A-L~~A~~~i~--~--G~~~~vLvvg~E~  216 (413)
T 1xes_A          180 VGVFQHGCFAGGTV-LRMAKDLAE--N--NRGARVLVICSET  216 (413)
T ss_dssp             EEEESCCTTHHHHH-HHHHHHHHH--T--STTCCEEEEEEEC
T ss_pred             hceecCccHHHHHH-HHHHHHHHH--c--CCCCEEEEEEehh
Confidence            57888899999999 898999996  3  35678888 8774

>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A

Probab=98.04  E-value=1.4e-06  Score=98.99  Aligned_cols=261  Identities=14%  Similarity=0.083  Sum_probs=136.6

Q ss_pred             cccccccceeeccccccchhHhhhhc---CcCcc---------cccccccccccccCCCcc-------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHD---QVSAG---------KYTIGLGQAKMGFCSDLE-------------------  540 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~---g~d~g---------Ky~~Glgq~~msv~~~~E-------------------  540 (945)
                      ..+.|.+++.|+|..++++++|+++-   +-+..         +.....|.+++.++.+.|                   
T Consensus        15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~r   94 (393)
T 3ov2_A           15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASFDDR   94 (393)
T ss_dssp             SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSSSSCCHHHH
T ss_pred             CCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccCCCCCHHHH
Confidence            56899999999999999999999862   21221         255567888999988776                   


Q ss_pred             ------hhhhhhhc---------------------------------------cCcchhh---HHH-HHHHHhHHHHHHH
Q psy11265        541 ------DINSICLT---------------------------------------LSIQCYL---GAL-DACYQGYRAKAAK  571 (945)
Q Consensus       541 ------DivTma~~---------------------------------------Lsl~~~~---~~l-daCy~~~~~~~al  571 (945)
                            +...||+.                                       |++...+   ..+ .+|.++.   .|+
T Consensus        95 ~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~~t~t~~~~p~~a~~v~~~LGl~~~~~~~~~v~~~C~g~~---~al  171 (393)
T 3ov2_A           95 QDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGA---AML  171 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCCBSCHHHHHHHHHTCCTTSEEEEEESCCTTHHH---HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCCCCCCCHHHHHHHHcCCCCCcceeeEEcCccHHHH---HHH
Confidence                  68888887                                       4443222   112 4888887   466


Q ss_pred             HhCccccCCCcceeeecCCcceEEEec--cc-cc-ccccc-c--cccCcccccchhhhH-hh---hcccCccc--ccccc
Q psy11265        572 LTGKELSLGDFDAVLFHTPYCKLVQKS--LA-RL-AYNDF-I--SATDRSQYEGAEAFA-HI---KNLEDTYF--NRDIE  638 (945)
Q Consensus       572 ~~a~~~~l~~~~~v~~~~p~~kLV~as--~a-ry-~~~~~-~--~~~E~tqgaGAvA~l-~i---~~~~~~~~--s~d~~  638 (945)
                      ..|.       +++..+.....||+.+  .+ ++ ...|- .  ...-...|+||.|++ .=   ..+....+  -.+-.
T Consensus       172 ~~A~-------~~i~sg~~~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~  244 (393)
T 3ov2_A          172 RIAK-------DLAENNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAAAMQ  244 (393)
T ss_dssp             HHHH-------HHHHHSTTCEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTCCCSEEEEEEEE
T ss_pred             HHHH-------HHHHcCCCCEEEEEEEeccchhccCCcccchhhhcccccccCccEEEEEEecCCCcccCceeEEEecCc
Confidence            6665       5566665455688765  43 33 22220 0  001223588888876 10   00000000  00000


Q ss_pred             cccccccccc--ccc-ccccc---chhchHHhhhh-hhHHHhhhhcccccCCc-chHHHHHHhCCCccchHHHHHHhhhc
Q psy11265        639 QYFMSHNLYR--TRL-AYNDF---ISATDRTEYEG-AEAFAHIKNLEDTYFNR-DIEQYFMSHNRTEYEGAEAFAHIKNL  710 (945)
Q Consensus       639 Df~Rp~~~~~--~~~-~~g~~---s~~~y~~~~~~-~~a~~~~~~~~~~~~~~-~~~~~~~~H~p~~~m~~~a~~~l~~~  710 (945)
                      . +.|.....  ..+ .+|.+   +..++.-+.+. +.+.+..  +....... +.. +|+.|++..++-....+.+   
T Consensus       245 ~-~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~--L~~~gl~~~~di-~~v~Hq~n~~i~~~v~~~L---  317 (393)
T 3ov2_A          245 E-TVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERA--LAPLGVREWNDV-FWVAHPGNWAIIDAIEAKL---  317 (393)
T ss_dssp             E-ECTTCTTSEEEEEETTEEEEEECTTHHHHHHTTSHHHHHHH--HGGGTCCSGGGS-EEEECCCCHHHHHHHHHHH---
T ss_pred             E-EecCCcccCceeeeCCceEEEECcHHHHHHHHHHHHHHHHH--HHHcCCCcccCc-EEEECCCChHHHHHHHHHc---
Confidence            0 11200000  000 01111   11112111100 0122222  12212221 222 6889988755543322222   


Q ss_pred             cccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhcc----CCccccCC--CcEEEEEecCCCc
Q psy11265        711 EDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQ----TPWERLQG--MSRIGLFSYGSDN  784 (945)
Q Consensus       711 e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~----~~~~~L~G--~~rI~l~s~GsG~  784 (945)
                                    .++.    .|+..+-..-++.||+.+||+++.|..+++.    ....  +|  .++|++++||.|.
T Consensus       318 --------------gl~~----ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~~~~g~~~--~G~~~d~vll~~fG~G~  377 (393)
T 3ov2_A          318 --------------QLSP----DKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRST--TGDGLQWGVLLGFGPGL  377 (393)
T ss_dssp             --------------TCCT----TTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSB--TTTTCSEEEEEEEETTT
T ss_pred             --------------CCCH----HHHHHHHHHHHHhCChHHhHHHHHHHHHHHhhhhcCCcC--CCCCCCeEEEEEECccc
Confidence                          2221    3444443334789999999999999999975    1111  33  2699999999997


Q ss_pred             ccccc
Q psy11265        785 IKALF  789 (945)
Q Consensus       785 ~~~~~  789 (945)
                      ...-.
T Consensus       378 t~~~~  382 (393)
T 3ov2_A          378 SIETV  382 (393)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            65533

>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A

Probab=98.03  E-value=6.2e-07  Score=101.50  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             hhchhhhhccccCcccchhHHHHHHHHhccCCccccCC-------CcEEEEEecCCCccc
Q psy11265        734 LTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQG-------MSRIGLFSYGSDNIK  786 (945)
Q Consensus       734 kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G-------~~rI~l~s~GsG~~~  786 (945)
                      |+..+...-++.||+.+||+++.|..+++... +  +|       -++|+|++||.|...
T Consensus       319 k~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~-~--~G~~~~G~~~d~vll~~fG~G~t~  375 (387)
T 3a5r_A          319 KLKVTRQVLKDYGNMSSATVFFIMDEMRKKSL-E--NGQATTGEGLEWGVLFGFGPGITV  375 (387)
T ss_dssp             GGHHHHHHHHHHCBCGGGHHHHHHHHHHHHHH-H--TTCSBTTTTCSEEEEEEEETTTEE
T ss_pred             HhHHHHHHHHhcCCcchhHHHHHHHHHHHhcc-c--cCCCCCCCCcceEEEEEecCccee
Confidence            44443233478999999999999999998642 1  33       169999999999654

>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}

Probab=97.95  E-value=3.4e-06  Score=97.88  Aligned_cols=143  Identities=12%  Similarity=0.001  Sum_probs=98.6

Q ss_pred             CcccceeeeeeecCCccccHHHHHhhcC-C---C--ccc---chhccCCccccCCCCC---------------------c
Q psy11265          6 PENVGILGIEFYFPSQYVDQTELEKHDQ-V---S--AGK---YTIGLGQAKMGFCSDL---------------------E   55 (945)
Q Consensus         6 ~~~VGI~ai~~y~p~~yvd~~~L~~~~g-v---~--~~K---yt~GLGq~~m~~~~~~---------------------E   55 (945)
                      .++|.|.+|..|+|+..|+|+||+++-+ .   .  ..|   .....|.++..++.+.                     |
T Consensus        29 ~~~v~I~gigt~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~p~~~~~~~ps~~~r~~~~~~  108 (465)
T 3e1h_A           29 ELGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMS  108 (465)
T ss_dssp             CCCEEEEEEEEECCSSCCBCTHHHHHTCSSSCCCHHHHHHHHHTTTSCCCCBCCSSCTTCGGGSSSSCCCHHHHHHHHHH
T ss_pred             CCCEEEEEEEEECCCcEEcHHHHHHHHHHhcccchhHHHHHHHHHhcCCceEEEeecccCcccccccCCCHHHHHHHHHh
Confidence            4789999999999999999999976532 1   1  133   3233466666666442                     4


Q ss_pred             cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh-hhhhh
Q psy11265         56 DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTAL  134 (945)
Q Consensus        56 Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~-k~acy  134 (945)
                      +...||+.|++++|++.++++++|+.| +++|-.     .... ..........|+..+..        .++++ ..+|.
T Consensus       109 ~a~~La~~Aa~~AL~~agi~~~dId~l-i~~t~t-----~~~~-P~~a~~v~~~LGl~~~~--------~~~dv~~~~Cs  173 (465)
T 3e1h_A          109 DGVPLAVEASRKAMAEARLVPAQITHM-VSTTCT-----DSAN-PGYDHYVAKELGLSDRL--------EKVLLHGIGCS  173 (465)
T ss_dssp             HTHHHHHHHHHHHHHHHTCCGGGCCEE-EEECSS-----CCCS-SCHHHHHHHHHTCCTTC--------EEEEECSCGGG
T ss_pred             hHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeeC-----CCCC-CcHHHHHHHHhCCCCCe--------eEEEecCCcch
Confidence            567999999999999999999999998 888861     0000 10111122345544333        45788 58999


Q ss_pred             hHHHHHHhhccceEEeecc--cCCCcceee-eccc
Q psy11265        135 GYLEQLMLNSMFSIHINRA--AVDTLKTLV-TKLS  166 (945)
Q Consensus       135 g~t~alL~~a~~~i~v~~~--~~~~~~~LV-asdi  166 (945)
                      |+..| |..|..+|+  +.  .+..+.+|| ++|.
T Consensus       174 gg~~A-L~~A~~~i~--a~~~~G~~~~vLVvg~E~  205 (465)
T 3e1h_A          174 GGLAA-LRTAANLCL--GHTARGKPARILVLALEV  205 (465)
T ss_dssp             HHHHH-HHHHHHHHH--HHHHTTCCCEEEEEEEEC
T ss_pred             HHHHH-HHHHHHHHh--cccccCCCCEEEEEEEee
Confidence            99999 999999996  31  145678888 7764

>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}

Probab=97.95  E-value=4.8e-06  Score=94.56  Aligned_cols=143  Identities=13%  Similarity=0.012  Sum_probs=98.1

Q ss_pred             CCCcccceeeeeeecCCccccHHHHHhhc------------------------CCCcccchhccCCccccCCCCCc----
Q psy11265          4 QWPENVGILGIEFYFPSQYVDQTELEKHD------------------------QVSAGKYTIGLGQAKMGFCSDLE----   55 (945)
Q Consensus         4 ~~~~~VGI~ai~~y~p~~yvd~~~L~~~~------------------------gv~~~Kyt~GLGq~~m~~~~~~E----   55 (945)
                      +..+++.|.+|..|+|+..|+++||+++-                        +.+.+....--|-++..++.+.|    
T Consensus        20 ~~~~~~~I~gig~~~P~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~I~~~tGI~~R~~a~~~~~~~~   99 (392)
T 3led_A           20 QGVRPAVIAATGLYTPPDSVSNAELVEAFNTYVANFNAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDP   99 (392)
T ss_dssp             CBCCCEEEEEEEEECCSEEEEHHHHHHHHHHHHHHHHHHTHHHHHTTSSCCCCCCCHHHHHHHHCCCEEEESCCGGGGCT
T ss_pred             cccCceEEEEEEEeCCCceEcHHHHHHHHhhhhcccccccchhhhcccccccCCCcHHHHHHccCCceEEEecCcccccc
Confidence            34477999999999999999999998631                        12233343334555555665532    


Q ss_pred             ----------------cHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccc
Q psy11265         56 ----------------DINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYK  119 (945)
Q Consensus        56 ----------------Divsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk  119 (945)
                                      ....||+.|++++|++.+++|++|+.| +++|..-   ..  ............|+..  +   
T Consensus       100 ~~~~~~~~~r~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~v-i~~t~t~---~~--~~p~~a~~v~~~LGl~--~---  168 (392)
T 3led_A          100 DVMRPIIPERSNDELSILAEMAVTAAEQAIERWGKPRERIGAV-LCACSNM---QR--AYPAMAIEVQNALGLG--G---  168 (392)
T ss_dssp             TTCSCCCCCCCTTSCCHHHHHHHHHHHHHHHHHCSCGGGEEEE-EEESSCC---SC--SBSCHHHHHHHHTTCC--S---
T ss_pred             cccccccccchhcccccHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecCC---CC--CccHHHHHHHHHhCCC--C---
Confidence                            367899999999999999999999988 7877610   00  0000111112334432  2   


Q ss_pred             cCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        120 AGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       120 ~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                           .++++..+|.|++.| |..|..+|+  +  ++.+.+|| ++|..
T Consensus       169 -----~~~dv~~aC~g~~~a-L~~A~~~i~--~--g~~~~vLvvg~E~~  207 (392)
T 3led_A          169 -----FAFDMNVACSSATFG-LKTAADFVG--G--GSVDAVLMVNPEIC  207 (392)
T ss_dssp             -----EEEEEECGGGHHHHH-HHHHHHHHH--T--TSCSEEEEEEEEEG
T ss_pred             -----eEEEECCccHHHHHH-HHHHHHHHH--C--CCCCEEEEEeehhc
Confidence                 357788899999999 999999996  3  35678898 87764

>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}

Probab=97.92  E-value=4.1e-06  Score=97.15  Aligned_cols=58  Identities=9%  Similarity=-0.009  Sum_probs=42.1

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccC--Ccc--ccCCCcEEEEEecCCCcccccccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT--PWE--RLQGMSRIGLFSYGSDNIKALFRR  791 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~--~~~--~L~G~~rI~l~s~GsG~~~~~~~~  791 (945)
                      .|+..+...-++.|||.+||+++.|..+++..  ...  ..+| ++|+|++||.|......-.
T Consensus       344 ek~~~s~~~l~~yGNtsSASip~aL~~~~~~~~g~l~~Gg~~~-d~vll~gfG~Glt~~~~ll  405 (465)
T 3e1h_A          344 EHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-EYVVGCAFGPGINVEMCML  405 (465)
T ss_dssp             GGGHHHHHHHHHHCBCGGGHHHHHHHHHTSTTTTSCSSSSCCC-SEEEEEEEETTTEEEEEEE
T ss_pred             HHhHHHHHHHhcceechHhHHHHHHHHHHHhcccccCCCCCCC-CEEEEEEEhHHHhhhheee
Confidence            45555555557889999999999999999861  111  1257 8999999999976554433

>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*

Probab=97.76  E-value=7.3e-06  Score=92.65  Aligned_cols=54  Identities=9%  Similarity=-0.029  Sum_probs=40.4

Q ss_pred             hhhchhhhhccccCcccchhHHHHHHHHhccC----CccccCCCcEEEEEecCCCcccc
Q psy11265        733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT----PWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       733 ~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~----~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      .|+..+...-++.|||.+||+++.|..++++.    .....+| ++|+|++||.|....
T Consensus       315 ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~~~l~~Gg~~~-d~vll~~fG~G~t~~  372 (379)
T 3euo_A          315 EHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-EYVVGCAFGPGINVE  372 (379)
T ss_dssp             GGGHHHHHHHHHHCBCGGGHHHHHHHHHTSHHHHTTCGGGCCC-SEEEEEEEETTTEEE
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHhhcccccCCCCCCC-CeEEEEEECcccEeE
Confidence            45655555557889999999999999999752    1001267 899999999997654

>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*

Probab=97.73  E-value=5.9e-06  Score=93.48  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=34.3

Q ss_pred             ccccCcccchhHHHHHHHHhccCCccccCC-------CcEEEEEecCCCcccc
Q psy11265        742 ANLIGNMYTPSLYGCLVSLLIQTPWERLQG-------MSRIGLFSYGSDNIKA  787 (945)
Q Consensus       742 ~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G-------~~rI~l~s~GsG~~~~  787 (945)
                      -++.||+.+||+++.|..+++... +  +|       .++|+|++||.|....
T Consensus       331 l~~~GNtssAsi~~~L~~~~~~g~-~--~G~~~~g~~~d~vll~~fG~G~t~~  380 (389)
T 1i88_A          331 LSEYGNMSSACVLFILDEMRKKST-Q--NGLKTTGEGLEWGVLFGFGPGLTIE  380 (389)
T ss_dssp             HHHHCBCGGGHHHHHHHHHHHHHH-H--TTCSBTTTTCSEEEEEEEETTTEEE
T ss_pred             HHHhCCchhhHHHHHHHHHHHhcc-c--cCCcccCCCCceEEEEEecCccEEE
Confidence            378999999999999999997642 1  33       1699999999996543

>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide synthase, transferase; 2.00A {Huperzia serrata} PDB: 3awj_A

Probab=97.58  E-value=6.1e-06  Score=93.94  Aligned_cols=51  Identities=14%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             hhchhhhhccccCcccchhHHHHHHHHhccCCccccCC-------CcEEEEEecCCCcccc
Q psy11265        734 LTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQG-------MSRIGLFSYGSDNIKA  787 (945)
Q Consensus       734 kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G-------~~rI~l~s~GsG~~~~  787 (945)
                      |+..+...-++.||+.+||+++.|..+++... +  +|       -++|+|++||.|....
T Consensus       336 k~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~-~--~G~~~~g~g~d~vll~~fG~G~t~~  393 (402)
T 3awk_A          336 KMQASRDVLASYGNMSSASVLFVLDQIRKNSE-E--LHLPTTGEGFEWGFVIGFGPGLTVE  393 (402)
T ss_dssp             TTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHH-H--TTCSBTTTTCSEEEEEEEETTTEEE
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHhhcc-c--cCCCcCCCCcceEEEEEecccceee
Confidence            44443223378999999999999999997641 1  33       1699999999996544

>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A

Probab=97.58  E-value=8.7e-06  Score=93.02  Aligned_cols=42  Identities=19%  Similarity=0.159  Sum_probs=33.7

Q ss_pred             ccccCcccchhHHHHHHHHhccCCccccCC-------CcEEEEEecCCCccc
Q psy11265        742 ANLIGNMYTPSLYGCLVSLLIQTPWERLQG-------MSRIGLFSYGSDNIK  786 (945)
Q Consensus       742 ~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G-------~~rI~l~s~GsG~~~  786 (945)
                      -++.||+.+||+++.|..+++... +  +|       .++|+|++||.|...
T Consensus       354 l~~~GNtssAsi~~~L~~~~~~g~-~--~G~~~~G~~~d~vll~~fG~G~t~  402 (413)
T 1xes_A          354 MSEYGNMSSACVHFILDQTRKASL-Q--NGCSTTGEGLEMGVLFGFGPGLTI  402 (413)
T ss_dssp             HHHHCBCGGGHHHHHHHHHHHHHH-H--TTCSBTTTTCSEEEEEEEETTTEE
T ss_pred             HHhcCcCchhhHHHHHHHHHHhcc-c--cCCCCCCCCcceEEEEEecCCcEE
Confidence            378999999999999999997642 1  23       269999999999754

>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor}

Probab=97.19  E-value=7e-05  Score=85.62  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=51.5

Q ss_pred             HHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhh--cchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccC
Q psy11265        687 EQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS--HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQT  764 (945)
Q Consensus       687 ~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~--~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~  764 (945)
                      .|+|+.|++..++- +++...|                .  ++    ..|+.+|...-+ .|||.+||+++.|..+++..
T Consensus       330 id~~v~Hq~~~~il-~~v~~~L----------------g~~l~----~ek~~~s~~~l~-~GNtssAsi~~~L~~~~~~~  387 (413)
T 3v7i_A          330 PDVLLAHPGGTRVL-EYMEQTM----------------PDEWP----SGLLSYSRDSYT-SGNRGGAAVFDILRRAHDAG  387 (413)
T ss_dssp             CCEEEEECSSHHHH-HHHHHHS----------------CSSCC----SCSTHHHHHHHT-TCBCGGGHHHHHHHHHHHHC
T ss_pred             eeEEEECCCChHHH-HHHHHHh----------------CCCCC----HHHhhccceEec-eeChHHHHHHHHHHHHHhCC
Confidence            57899998775543 2222221                1  22    245555444446 99999999999999999432


Q ss_pred             CccccCCCcEEEEEecCCCcccc
Q psy11265        765 PWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       765 ~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                       ..  +| ++|++++||.|....
T Consensus       388 -~~--~G-d~vll~~fG~Glt~~  406 (413)
T 3v7i_A          388 -QK--TG-SRAVLYAAAPGLTAT  406 (413)
T ss_dssp             -CC--TT-CEEEEEEEETTTEEE
T ss_pred             -CC--CC-CEEEEEEECHHHhHh
Confidence             22  89 999999999997654

>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor}

Probab=97.08  E-value=0.0001  Score=84.24  Aligned_cols=93  Identities=14%  Similarity=0.029  Sum_probs=66.3

Q ss_pred             ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh-hhhh
Q psy11265         55 EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTA  133 (945)
Q Consensus        55 EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~-k~ac  133 (945)
                      |+...||+.|++++|++.++++++|+.| +++|-.     ...... ........|+..+.+        ..+++ ..+|
T Consensus       135 ~~~~~La~~Aa~~AL~~agi~~~dId~l-i~~t~t-----~~~~P~-~a~~v~~~LGl~~~~--------~~~~v~~~~C  199 (413)
T 3v7i_A          135 EAVQAYGERAARGALQIAGLDVADVDCL-ITSNST-----TPALPG-LDVALANRLPLRGDT--------MLLPATQWAC  199 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEE-EEECCS-----SCCSSC-HHHHHHHHTTCCTTC--------EEEEESSCGG
T ss_pred             cCHHHHHHHHHHHHHHHhCcCHHHCCEE-EEEccC-----CCCcCH-HHHHHHHHhCCCCCc--------eEEEeeCCcc
Confidence            4677899999999999999999999998 888871     111111 111222445554433        44677 7899


Q ss_pred             hhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265        134 LGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       134 yg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      .|+..| |..|..+|+  +  ++...+|| ++|.-
T Consensus       200 agg~~A-L~~A~~~i~--a--g~~~~vLvvg~E~~  229 (413)
T 3v7i_A          200 VAGTRS-LALAADLVA--A--DPDRVVLVVISEAL  229 (413)
T ss_dssp             GHHHHH-HHHHHHHHH--H--CTTCEEEEEEEECG
T ss_pred             HHHHHH-HHHHHHHHh--c--CCCCEEEEEEEecc
Confidence            999999 999999996  3  35688998 87753

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.71  E-value=0.0016  Score=74.82  Aligned_cols=55  Identities=7%  Similarity=-0.071  Sum_probs=48.4

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEe
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVC  351 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i  351 (945)
                      ...|+.|+++|+|+.   ||+.|+++.  +.++.|.+|.|.  + |+.+|.+|++||...|.+
T Consensus       155 a~~gD~V~id~~~~~---dG~~~~~~~--~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v  209 (433)
T 3gty_X          155 AEAGDLVRVNMEVYN---EEGKKLTSR--EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER  209 (433)
T ss_dssp             CCTTSEEEEEEEEEC---TTSCEEEEE--EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE
T ss_pred             cCCCCEEEEEEEEEE---CCEECcCCC--CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE
Confidence            357999999999986   899999874  478999999987  4 999999999999998887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.72  E-value=0.015  Score=57.63  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=44.6

Q ss_pred             EEEEeeeCCchhhhhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHH
Q psy11265        410 IELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       410 VELl~v~~p~~y~ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      ..+..+++    .++.|+|+.+++.+.+..++..|+.+|+.|+|..|+..|.+|+.+.
T Consensus        15 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   68 (198)
T 2fbn_A           15 ENLYFQGA----KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF   68 (198)
T ss_dssp             -------C----CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhhccc----cCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34555666    7999999999999999999999999999999999999999999854

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.58  E-value=0.0084  Score=57.39  Aligned_cols=50  Identities=32%  Similarity=0.579  Sum_probs=46.3

Q ss_pred             ecCCChhhHhhhcccccceehhhhhcccccchhHHHHhhhhhhccCCCCc
Q psy11265        889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT  938 (945)
Q Consensus       889 ekp~~~~w~~l~~~~~pl~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~~  938 (945)
                      +.|.+++|.+++.....+++|.++|++.+|+|-++|++|..+|+.+|++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~   97 (162)
T 3rkv_A           48 EKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE   97 (162)
T ss_dssp             SCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch
Confidence            46889999999999999999999999999999999999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.56  E-value=0.034  Score=53.04  Aligned_cols=44  Identities=36%  Similarity=0.630  Sum_probs=36.5

Q ss_pred             CHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHHhhhh
Q psy11265        429 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML  472 (945)
Q Consensus       429 s~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~~~~  472 (945)
                      ..+|+++.+..+++.||.+|+.|+|..|+..|.+|+.++.....
T Consensus         3 ~~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~   46 (162)
T 3rkv_A            3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL   46 (162)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Confidence            35789999999999999999999999999999999999876653

>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens}

Probab=90.80  E-value=0.11  Score=59.07  Aligned_cols=127  Identities=9%  Similarity=-0.091  Sum_probs=72.4

Q ss_pred             cCCccccHHHHHhhcCC--CcccchhccCCccccCC----CCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCccc
Q psy11265         18 FPSQYVDQTELEKHDQV--SAGKYTIGLGQAKMGFC----SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEY   91 (945)
Q Consensus        18 ~p~~yvd~~~L~~~~gv--~~~Kyt~GLGq~~m~~~----~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~   91 (945)
                      -|...++=.+|++.-+.  ...-|-+|.|++.++-.    ...++...|++.|++..|++.++++++|+.+ .++|-.. 
T Consensus        10 ~P~~~~~n~~~~~~~~~~~~~~v~Ivg~~rt~~g~~~~~~~~~~~~~~L~~~Aa~~AL~dAgl~~~~id~v-~~g~~~~-   87 (418)
T 2iik_A           10 GVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDI-CVGNVLQ-   87 (418)
T ss_dssp             -----------------CCTTCEEEEEEEECCCEETTTSTTTTCCHHHHHHHHHHHHHHHHTCCGGGCCCE-EEECSSS-
T ss_pred             CCCccccHHHHHHHhhhccCCCeEEEeeeecCceecCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEecCC-
Confidence            37888888899886442  12346667666665542    4678999999999999999999999999887 7776511 


Q ss_pred             ccccccccchhhhhhc-ccccc--cCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         92 EQESWQLTEAEKLASI-PKLKE--DGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        92 ~~s~wd~s~~d~sk~~-~~l~~--~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                           +.........+ ..++.  .+.+          +.+-.+|-++..| |..|..+|+  ++  ....+|| +++.
T Consensus        88 -----~~~~~~~a~~~a~~lGl~~~~p~----------~~v~~aCss~~~A-l~~A~~~I~--~G--~~d~vLv~G~e~  146 (418)
T 2iik_A           88 -----PGAGAIMARIAQFLSDIPETVPL----------STVNRQCSSGLQA-VASIAGGIR--NG--SYDIGMACGVES  146 (418)
T ss_dssp             -----BGGGHHHHHHHHHHTTCCTTSCE----------EEEECGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEEE
T ss_pred             -----ccccccHHHHHHHHcCCCCCceE----------EEeCCCCHHHHHH-HHHHHHHHH--CC--CCCEEEEecccc
Confidence                 11111111111 22333  2222          5677799999999 888999996  33  4567788 6553

>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile}

Probab=90.06  E-value=0.12  Score=58.29  Aligned_cols=109  Identities=10%  Similarity=-0.090  Sum_probs=71.2

Q ss_pred             chhccCCcccc---CCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMG---FCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~---~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++.++   ...+.++...|++.|++..|++.++++++|+.+ .+++-..    .+.... ........++.+.+
T Consensus        10 ~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~AL~~agl~~~dId~v-i~g~~~~----~~~~~~-~a~~v~~~lGl~~~   83 (396)
T 4dd5_A           10 VIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDES-LLGGVLT----AGLGQN-IARQIALGAGIPVE   83 (396)
T ss_dssp             EEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEE-EEECSCC----TTSCSC-HHHHHHHHTTCCTT
T ss_pred             EEEEcccCCeeecCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeecC----CCCCch-HHHHHHHHcCCCCC
Confidence            55566665443   334678999999999999999999999999988 7776510    011000 11111122343212


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .        -.+.+..+|.++..| |..|..+|+  ++  ....+|| +++.
T Consensus        84 ~--------p~~~v~~aCss~~~a-l~~A~~~I~--~G--~~~~vLv~g~e~  122 (396)
T 4dd5_A           84 K--------PAMTINIVCGSGLRS-VSMASQLIA--LG--DADIMLVGGAEN  122 (396)
T ss_dssp             S--------CEEEECCGGGHHHHH-HHHHHHHHH--HT--SCSEEEEEEEEE
T ss_pred             c--------eEEEeccccHHHHHH-HHHHHHHHh--cC--CCCEEEEEEEec
Confidence            2        346777899999999 888888886  33  4578888 6553

>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A

Probab=89.60  E-value=0.074  Score=59.13  Aligned_cols=87  Identities=14%  Similarity=0.001  Sum_probs=61.8

Q ss_pred             CccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhh
Q psy11265         54 LEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTA  133 (945)
Q Consensus        54 ~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~ac  133 (945)
                      .+....||..|++.+|++.++++++|+.| +++|-..      +..  ........+.    .        .++++..||
T Consensus        52 e~a~sdLa~~Aa~~AL~~AGi~~~DID~I-I~gt~t~------q~~--~A~~va~~Lg----i--------pafdV~~AC  110 (347)
T 3lma_A           52 EMAERKLMEDAVQSALSKQNLKKEDIDIF-LAGDLLN------QNV--TANYVARHLK----I--------PFLCLFGAC  110 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCGGGCSEE-EEEESSS------SST--THHHHHHHHC----C--------CEEEBCCST
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeCCC------chh--HHHHHHHHhC----C--------CEEEecChh
Confidence            34566799999999999999999999988 7887611      111  1111112221    2        357888999


Q ss_pred             hhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        134 LGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       134 yg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      -|+..| |..|..+|+  +  +..+.+|| +++.
T Consensus       111 sg~~~A-L~~Aa~~I~--s--G~~~~VLVVGaE~  139 (347)
T 3lma_A          111 STSMES-IAISSALID--G--GFAKRALAATSSH  139 (347)
T ss_dssp             THHHHH-HHHHHHHHH--T--TSCSEEEEEEEEC
T ss_pred             HHHHHH-HHHHHHHHh--c--CCCCEEEEEEecc
Confidence            999999 888888886  3  34578888 7664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=89.00  E-value=0.16  Score=47.07  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=28.1

Q ss_pred             ccchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        436 SIPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       436 ~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      .+...+++||.+|++|+|.+|+..|++|+..
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~   42 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR   42 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3667899999999999999999999999874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=87.06  E-value=0.25  Score=45.64  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             hhccchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        434 LASIPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       434 l~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      .+.|...|+.||.+|++|+|.+|+..|++|+.+
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~   37 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL   37 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345777899999999999999999999999974

>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile}

Probab=86.84  E-value=0.29  Score=55.07  Aligned_cols=108  Identities=7%  Similarity=-0.040  Sum_probs=69.0

Q ss_pred             chhccCCccccC---CCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGF---CSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~---~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++.++-   ....++...|++.|++.+|++.++++++|+.+ .+++-...    ..+.. ........++.+.+
T Consensus         8 ~Ivg~~rT~~g~~~~~~~~~~~~~L~~~a~~~Al~~agi~~~~Id~v-~~g~~~~~----~~~~~-~a~~~~~~lGl~~~   81 (395)
T 4e1l_A            8 VIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEV-IIGNVLQT----GLGQN-VARQIAINAGIPNS   81 (395)
T ss_dssp             EEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEE-EEECCCCS----STTCC-HHHHHHHHTTCCTT
T ss_pred             EEEECccCCccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeccCC----CCcch-HHHHHHHHcCCCCC
Confidence            455666655432   23567899999999999999999999999988 77765100    00000 01111122333211


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      .        -.+.+..+|-++..| |..|...|+  ++  ....+|| +++
T Consensus        82 ~--------p~~~v~~~Css~~~a-l~~A~~~I~--~G--~~~~vlv~g~e  119 (395)
T 4e1l_A           82 V--------PSYTVNKLCGSGLKS-VQLAAQSIT--SG--ENDVVIAGGTE  119 (395)
T ss_dssp             S--------CEEEECCGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEE
T ss_pred             c--------eEEEccccchHHHHH-HHHHHHHHh--CC--CCCEEEEEEEe
Confidence            2        235677899999999 888888886  33  4567887 554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=85.71  E-value=0.35  Score=47.95  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=33.1

Q ss_pred             HhhhccchhhHhcccccccccHHHHHHHHHHHHHHHH
Q psy11265        432 EKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE  468 (945)
Q Consensus       432 Ekl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le  468 (945)
                      -.++.+..++..||.+|+.|+|.+|+.+|.+||.+..
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p   42 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISH   42 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence            3467789999999999999999999999999999763

>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis}

Probab=84.29  E-value=0.4  Score=53.96  Aligned_cols=108  Identities=5%  Similarity=-0.025  Sum_probs=68.9

Q ss_pred             chhccCCccccC---CCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGF---CSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~---~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++.++-   ....++...|++.|++.+|++.++++++|+.+ .+++-...    ..+.. ........++.+.+
T Consensus         8 ~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~Al~~agl~~~~Id~v-~~g~~~~~----~~~~~-~a~~i~~~lGl~~~   81 (394)
T 3ss6_A            8 VITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEV-ILGHCIQR----TDEAN-TARTAALAAGFPDT   81 (394)
T ss_dssp             EEEEEEECCCEETTSTTTTCCHHHHHHHHHHHHHHHTTCCGGGCCEE-EEECSSCC----GGGCS-HHHHHHHHTTCCTT
T ss_pred             EEEEcccCCccccCCCCCCCCHHHHHHHHHHHHHHHcCCCHhHCCEE-EEEEccCC----Cccch-HHHHHHHHcCCCCC
Confidence            455666554432   33567899999999999999999999999998 77765110    00000 00111122333211


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      .        -.+.+-.+|-++..| |..|...|+  ++  .-..+|| .++
T Consensus        82 ~--------p~~~v~~aCss~~~a-l~~A~~~I~--~G--~~~~vlv~G~e  119 (394)
T 3ss6_A           82 V--------TGYTIQRQCSSGMQA-IMSAAMQIQ--LG--VSEVVVAGGVE  119 (394)
T ss_dssp             C--------EEEEEECGGGHHHHH-HHHHHHHHH--HT--SCSEEEEEEEE
T ss_pred             c--------eEEEecCcchHHHHH-HHHHHHHHh--CC--CCCEEEEEEEh
Confidence            2        345677899999999 888888886  33  3467787 554

>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1

Probab=80.73  E-value=0.7  Score=52.08  Aligned_cols=110  Identities=7%  Similarity=-0.038  Sum_probs=70.0

Q ss_pred             chhccCCccccCC---CCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCc
Q psy11265         39 YTIGLGQAKMGFC---SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGN  115 (945)
Q Consensus        39 yt~GLGq~~m~~~---~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn  115 (945)
                      |-+|.|++.++-.   ...++...|++.|++..|++.++++++|+.+ .++|-..    .+.............++.+.+
T Consensus         5 ~Ivg~~rT~~~~~~g~~~~~~~~~L~~~Aa~~Al~dAgl~~~~id~v-~~g~~~~----~~~~~~~~a~~va~~lGl~~~   79 (401)
T 1ulq_A            5 WIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDV-YAGCANQ----AGEDNRNVARMALLLAGFPVE   79 (401)
T ss_dssp             EEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHHTCCGGGCCEE-EEECSCC----SSTTTTTHHHHHHHHTTCCTT
T ss_pred             EEEEcccCCccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE-EEEeccc----CCCCCChHHHHHHHHhCCCCC
Confidence            4456666654432   3468899999999999999999999999887 7776511    000000011111123443111


Q ss_pred             cccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265        116 TLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus       116 ~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .        -.+.+-.+|-++..| |..|...|+  ++  .-..+|| +++.
T Consensus        80 ~--------p~~~v~~aCas~~~A-l~~A~~~I~--~G--~~d~vLv~G~e~  118 (401)
T 1ulq_A           80 V--------AGCTVNRLCGSGLEA-VAQAARAIW--AG--EGKVYIGSGVES  118 (401)
T ss_dssp             C--------EEEEEECGGGHHHHH-HHHHHHHHH--TT--SCSEEEEEEEEE
T ss_pred             c--------cEeeccccchHHHHH-HHHHHHHHH--CC--CCCEEEEEEEee
Confidence            1        236777899999999 888999996  33  3467777 6653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	945
d1xpma1	166	c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA	2e-14
d1xpma1	166	c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA	4e-14
d1xpma1	166	c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA	1e-13
d1xpma2	221	c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co	2e-11
d1xpma2	221	c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co	3e-08
d1xpma2	221	c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co	7e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	8e-06
d1u6ea1	184	c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa	1e-05
d1u6ea1	184	c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa	2e-05
d1u6ea1	184	c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa	3e-05

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 69.4 bits (169), Expect = 2e-14
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 9  VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
          +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+      ++
Sbjct: 2  IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61

Query: 69 MKRYELD 75
          +   +  
Sbjct: 62 ITDEDKK 68

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 69.1 bits (168), Expect = 4e-14
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+        
Sbjct: 2   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61

Query: 300 VTQLCDSDNTIL 311
           +T        ++
Sbjct: 62  ITDEDKKKIGMV 73

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQC 553
           +GI  I FY P  YVD  +L +  QV   K+ IG+GQ +M      +DI S+    +   
Sbjct: 2   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYND 606
           LS   Y+ +    +  Y  +  K      SL DF ++ FH P+ K+ +K+L  +  N 
Sbjct: 33  LSKDAYIRSFQQSWNEYAKRQGK------SLADFASLCFHVPFTKMGKKALESIIDNA 84

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
             +S  +     D L          +  L+ R  V    +        +      F  E 
Sbjct: 145 EFYSATLVEGYKDHLDQA-----AHKALLNNRTEVSVDAYETFF----KRFDDVEF-DEE 194

Query: 204 PPGEYLFDGSYYLESIDDFHRRHYKK 229
               +     +YL +I++  R +++ 
Sbjct: 195 QDAVHEDRHIFYLSNIENNVREYHRP 220

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 717 RDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIG 776
             I       +++      +  +     +GN+YT SLY  L+SLL       LQ    IG
Sbjct: 78  ESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLEN---RDLQAGETIG 134

Query: 777 LFSYGS 782
           LFSYGS
Sbjct: 135 LFSYGS 140

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 424 ESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKP 483
           ESW++   EKL     +KE G   +K G    A+ +Y   + +LE         ++  + 
Sbjct: 2   ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 61

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 94  ESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 139
           ESW++   EKL     +KE G   +K G    A+ +Y   + +LE 
Sbjct: 2   ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM 47

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 7/160 (4%)

Query: 425 SWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKPP 484
           SW++   EKL     +KE G   +K G  + AL +Y   + +LE          +  +  
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 485 -IMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDIN 543
            + SH       +    F    +  ++      +             A   F     D  
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 544 SICLTL-----SIQCYLGALDACYQGYRAKAAKLTGKELS 578
              L L     + +  L       +   A+  KL      
Sbjct: 121 K-VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 95  SWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQ 139
           SW++   EKL     +KE G   +K G  + AL +Y   + +LE 
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY 45

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 17/69 (24%), Positives = 28/69 (40%)

Query: 422 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTV 481
           ++  +  T+ EK+ S   +KE+GN  +K   I  A+ KY  AL +          +    
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 482 KPPIMSHQW 490
           K  I     
Sbjct: 62  KKNIEISCN 70

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 92  EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYS 131
           ++  +  T+ EK+ S   +KE+GN  +K   I  A+ KY 
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYK 41

>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 24/72 (33%)

Query: 4  QWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 63
              +VG+L +  Y P + V   E+ +H   S        G     F +D E   S+   
Sbjct: 8  SGARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATE 67

Query: 64 VVSNLMKRYELD 75
               +    L 
Sbjct: 68 ACRRALSNAGLS 79

>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 234 TAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSIC 292
           T+   +VG+L +  Y P + V   E+ +H   S        G     F +D E   S+ 
Sbjct: 7   TSGARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMA 65

>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 484 PIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDIN 543
            I +     +VG+L +  Y P + V   E+ +H   S        G     F +D E   
Sbjct: 3   EIATTSGARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAA 62

Query: 544 SIC 546
           S+ 
Sbjct: 63  SMA 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	945
d1xpma2	221	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	100.0
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.84
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.83
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.83
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.82
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.81
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.81
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.8
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.78
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.76
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.69
d1xpma1	166	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	99.67
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.6
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.53
d1u6ea1	184	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	99.4
d1hnja1	174	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	99.3
d1xpma1	166	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	99.28
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.21
d1mzja1	181	Priming beta-ketosynthase from the r1128 polyketid	99.14
d1ub7a1	172	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	99.02
d1xpma2	221	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	98.93
d1teda_	372	Polyketide synthase PKS18 {Mycobacterium tuberculo	98.9
d1u6ea1	184	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	98.46
d1u0ma1	200	Putative polyketide synthase SCO1206 {Streptomyces	98.35
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.19
d1bi5a1	235	Chalcone synthase {Alfalfa (Medicago sativa) [TaxI	98.13
d1teda_	372	Polyketide synthase PKS18 {Mycobacterium tuberculo	98.11
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.01
d1hnja1	174	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	97.91
d1mzja1	181	Priming beta-ketosynthase from the r1128 polyketid	97.88
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.85
d1ub7a1	172	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	97.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.74
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.51
d1u0ma2	148	Putative polyketide synthase SCO1206 {Streptomyces	96.72
d1mzja2	153	Priming beta-ketosynthase from the r1128 polyketid	96.5
d1u6ea2	148	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	96.03
d1hnja2	143	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	95.8
d1ub7a2	149	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	95.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.45
d1u0ma1	200	Putative polyketide synthase SCO1206 {Streptomyces	94.4
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	92.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	92.01
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	91.52
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	90.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1bi5a1	235	Chalcone synthase {Alfalfa (Medicago sativa) [TaxI	90.16
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	89.23
d1u0ua2	156	Dihydropinosylvin synthase {Scots pine (Pinus sylv	88.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	86.88
d1ee0a2	160	Pyrone synthase (PyS, chalcone synthase 2) {Gerber	84.79
d1bi5a2	154	Chalcone synthase {Alfalfa (Medicago sativa) [TaxI	83.73

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=5.5e-35  Score=304.19  Aligned_cols=150  Identities=19%  Similarity=0.269  Sum_probs=129.0

Q ss_pred             hhcccC--cccccccccccccccccc-ccccccccchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchH
Q psy11265        625 IKNLED--TYFNRDIEQYFMSHNLYR-TRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGA  701 (945)
Q Consensus       625 i~~~~~--~~~s~d~~Df~Rp~~~~~-~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~  701 (945)
                      |+++++  ++|+.|++|||||  +++ +|+|||++|+.||+++++.  ||.+|.+..+.  ..+.+||+|||+||++|+.
T Consensus         1 il~~~~~~~~y~~~~~DF~rP--~~~~~pvvDG~~S~~~Yl~~l~~--~~~~~~~~~g~--~~~dfd~~~fH~P~~km~~   74 (221)
T d1xpma2           1 ILALNEDAVAYTEDVYDFWRP--TGHKYPLVDGALSKDAYIRSFQQ--SWNEYAKRQGK--SLADFASLCFHVPFTKMGK   74 (221)
T ss_dssp             SEEECSCCEEEECCCCSEECB--TTCSSCEECHHHHHHHHHHHHHH--HHHHHHHHHTC--CGGGCSEEEECCSSHHHHH
T ss_pred             CEEEeCCCEeeeccCccccCC--CCCCCCeECCcchHHHHHHHHHH--HHHHHHHHcCC--ChhhhheEEeecCchhhHH
Confidence            455664  8999999999999  666 9999999999999999995  99999554442  2355788999999999999


Q ss_pred             HHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecC
Q psy11265        702 EAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYG  781 (945)
Q Consensus       702 ~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~G  781 (945)
                      +|++.++.  .          ....+++.++++++||+.++++||||||||+|++|+|||++.+  +++| +||||||||
T Consensus        75 ka~~~l~~--~----------~~~~~~~~~~~~~~~s~~~~~~iGN~YTaSlyl~L~Sll~~~~--~~~G-~rIglfSYG  139 (221)
T d1xpma2          75 KALESIID--N----------ADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRD--LQAG-ETIGLFSYG  139 (221)
T ss_dssp             HHHHTTGG--G----------SCHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHHHHSC--CCTT-CEEEEEEEE
T ss_pred             HHHHHHHh--c----------cchhhHHHHHHhhhhHHHHHHhcCCcchHHHHHHHHhhhcccc--CCCC-CEEEEEEec
Confidence            99999841  1          1134578899999999999999999999999999999999864  5699 999999999


Q ss_pred             CCcccccccccccc
Q psy11265        782 SDNIKALFRRGKAH  795 (945)
Q Consensus       782 sG~~~~~~~~~~~~  795 (945)
                      ||+.++||++++.+
T Consensus       140 SG~~ae~fs~~V~~  153 (221)
T d1xpma2         140 SGSVGEFYSATLVE  153 (221)
T ss_dssp             TTTEEEEEEEEECT
T ss_pred             CCcceeEEEEEEcc
Confidence            99999999999954

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.5e-21  Score=179.66  Aligned_cols=95  Identities=24%  Similarity=0.445  Sum_probs=86.9

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      ..|..|++|+|||+|++  .||++||||+++++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.     
T Consensus        25 ~~P~~gd~V~v~y~~~l--~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l--aYG~-----   95 (120)
T d1q1ca1          25 EMPMIGDRVFVHYTGWL--LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEY--AYGS-----   95 (120)
T ss_dssp             CCCCTTCEEEEEEEEEE--TTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGG--TTTT-----
T ss_pred             cCCCCCCEEEEEEEEEE--cCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEECHHH--hCCC-----
Confidence            46899999999999999  59999999999999999999999999999999999999999999999999  9997     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                              .|.+                   ..||||++|+|+|||++|+.
T Consensus        96 --------~g~~-------------------~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          96 --------AGSP-------------------PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             --------TCBT-------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             --------cCCC-------------------CCCCcCCcEEEEEEEEEEeC
Confidence                    2221                   24999999999999999964

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=5.6e-21  Score=180.00  Aligned_cols=94  Identities=26%  Similarity=0.419  Sum_probs=86.1

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      .+|..|++|+|||+|++  .||++||+|+.+++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.     
T Consensus        24 ~~p~~gd~V~v~y~~~l--~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ipp~l--aYG~-----   94 (118)
T d1r9ha_          24 VKPTTGTTVKVHYVGTL--ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDY--GYGD-----   94 (118)
T ss_dssp             CCCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGG--TTTT-----
T ss_pred             CCCCCCCEEEEEEEEEE--cCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEECHHH--hCCc-----
Confidence            46999999999999999  59999999999899999999999999999999999999999999999999  9997     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                              .|.+                   ..|||+++|+|+|||++|.
T Consensus        95 --------~g~~-------------------~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          95 --------AGSP-------------------PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             --------TCBT-------------------TTBCTTCCEEEEEEEEEEE
T ss_pred             --------CCCC-------------------CccCcCCcEEEEEEEEEEe
Confidence                    2221                   2499999999999999984

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.4e-21  Score=175.36  Aligned_cols=93  Identities=30%  Similarity=0.494  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|..|++|+|||+|++  .||++||+|+++++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.      
T Consensus        15 ~p~~gd~V~v~y~g~l--~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l--aYG~------   84 (107)
T d2ppna1          15 FPKRGQTCVVHYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY--AYGA------   84 (107)
T ss_dssp             CCCTTCEEEEEEEEEE--TTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG--TTTT------
T ss_pred             CCCCCCEEEEEEEEEe--cCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH--hCCC------
Confidence            5899999999999999  59999999998899999999999999999999999999999999999999  9997      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                             +|.+                   ..||||++|+|+|||++|+
T Consensus        85 -------~g~~-------------------~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          85 -------TGHP-------------------GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             -------TCBT-------------------TTBCTTCCEEEEEEEEEEC
T ss_pred             -------CCCC-------------------CCCCcCCeEEEEEEEEEEC
Confidence                   2211                   2499999999999999984

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=175.76  Aligned_cols=95  Identities=23%  Similarity=0.419  Sum_probs=84.3

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCC-------CCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccC
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRK-------LGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAY  359 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~-------~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aY  359 (945)
                      +.|+.|++|+|||+|+|  .||++||+|.+       +++|++|.+|.+++|+||+++|.+|++||+++|+|||++  ||
T Consensus        15 ~~P~~gd~V~v~y~~~l--~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~~~ip~~~--ay   90 (116)
T d1pbka_          15 NFPKKGDVVHCWYTGTL--QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEW--AY   90 (116)
T ss_dssp             CCCCTTCEEEEEEEEEC--TTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGG--TT
T ss_pred             CCCCCCCEEEEEEEEEE--CCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEEEEECHHH--hC
Confidence            46999999999999999  69999999864       457999999999999999999999999999999999999  99


Q ss_pred             CccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        360 PFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       360 G~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                      |.             .|.+                  ...|||+++|+|+|||++|+
T Consensus        91 G~-------------~g~~------------------~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          91 GK-------------KGQP------------------DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             TT-------------TCBG------------------GGTBCTTCCEEEEEEEEEEC
T ss_pred             Cc-------------cCCC------------------CCCcCcCCeEEEEEEEEEEC
Confidence            97             2211                  12499999999999999985

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.82  E-value=3.9e-21  Score=179.14  Aligned_cols=94  Identities=26%  Similarity=0.457  Sum_probs=70.6

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhh
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL  366 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~l  366 (945)
                      ..|..|++|+|||+|++  .||++||||+++++|++|.+|.+++|+||+++|.+|++||+++|+|||++  |||.     
T Consensus        18 ~~P~~gd~V~v~y~~~l--~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l--ayG~-----   88 (111)
T d1kt1a2          18 ETPMIGDRVYVHYNGKL--ANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEY--AYGA-----   88 (111)
T ss_dssp             CCCCTTCEEEEECCCCS--CC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC------CCCT-----
T ss_pred             cCCCCCCEEEEEEEEEE--CCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEECHHH--hCCC-----
Confidence            46999999999999998  59999999999999999999999999999999999999999999999999  9997     


Q ss_pred             HhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        367 RDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       367 r~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                              .|..                   ..||||++|+|+|||++|+
T Consensus        89 --------~g~~-------------------~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          89 --------TGSL-------------------PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             --------TTCT-------------------TTSCTTCCCEEEEEEEEEE
T ss_pred             --------CCCC-------------------CcCCcCCeEEEEEEEEEEC
Confidence                    2221                   2499999999999999985

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.3e-20  Score=172.45  Aligned_cols=92  Identities=25%  Similarity=0.417  Sum_probs=85.1

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .|+.|++|+|||+|++  .||++||+|++++.|+.|.+|.+++|+||+++|.+|++||+++|.|||++  |||.      
T Consensus        21 ~P~~gd~V~v~y~~~~--~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~iP~~l--aYG~------   90 (113)
T d1yata_          21 FPKTGDLVTIHYTGTL--ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPY--AYGP------   90 (113)
T ss_dssp             CCCTTCEEEEEEEEEE--TTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECGGG--TTTT------
T ss_pred             CCCCCCEEEEEEEEEE--ecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEechHH--eecC------
Confidence            5899999999999999  69999999999999999999999999999999999999999999999999  9997      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                             .|.+                   ..|||+++|+|+|||++|
T Consensus        91 -------~g~~-------------------~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          91 -------RGFP-------------------GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             -------TCBT-------------------TTBCTTCCEEEEEEEEEE
T ss_pred             -------cCCC-------------------CccCcCCeEEEEEEEEEe
Confidence                   2321                   249999999999999987

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.5e-20  Score=190.45  Aligned_cols=107  Identities=24%  Similarity=0.294  Sum_probs=93.3

Q ss_pred             ccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCC
Q psy11265        264 QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI  343 (945)
Q Consensus       264 ~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~  343 (945)
                      .+++|.++..+.       .|.++.|..|++|+|||+|+|  .||++||+|+.+++|++|.+|  +||+||+++|..|++
T Consensus       104 ~~~sGl~y~v~~-------~G~G~~p~~gd~v~v~y~g~l--~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~  172 (210)
T d1q6ha_         104 TSSTGLVYQVVE-------AGKGEAPKDSDTVVVNYKGTL--IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKK  172 (210)
T ss_dssp             ECTTSCEEEEEE-------CCSSCCCCTTCEEEEEEEEEE--TTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCT
T ss_pred             EccCceEEEEee-------CCCCCCCCCCceEEEEEEEEE--cCCCEEeecccCCCcceeccC--ccchhHHHHHhhccC
Confidence            446777776653       345679999999999999999  599999999999999999996  699999999999999


Q ss_pred             CcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        344 GEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       344 GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                      |++++|+|||++  |||.             .|.+                    .||||++|+|||||++|+
T Consensus       173 G~k~~~~iP~~l--aYG~-------------~g~~--------------------~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         173 GGKIKLVIPPEL--AYGK-------------AGVP--------------------GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             TCEEEEEECGGG--TTTT-------------TCBT--------------------TBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHH--CcCC-------------CCCC--------------------CCCcCCcEEEEEEEEEEC
Confidence            999999999999  9997             3321                    299999999999999984

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=4.2e-20  Score=189.87  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=93.9

Q ss_pred             ccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCC
Q psy11265        264 QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI  343 (945)
Q Consensus       264 ~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~  343 (945)
                      .+++|.++..+.       .|.|..|..|++|+|||+|+|  .||++||+|+.+++|++|.+|  ++|+||+++|..|++
T Consensus        95 ~~~sGl~y~v~~-------~G~G~~p~~~d~v~v~y~g~l--~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~  163 (204)
T d1fd9a_          95 VLPSGLQYKVIN-------SGNGVKPGKSDTVTVEYTGRL--IDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPA  163 (204)
T ss_dssp             ECTTSCEEEEEE-------CCCSCCCCTTCEEEEEEEEEE--TTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCT
T ss_pred             EecCccEEEEee-------cCCCcccCCCCEEEEEEEEEE--CCCCEecccccCCCCceecCC--ccchhHHHHhcCCCC
Confidence            346776666553       345678999999999999999  599999999999999999876  699999999999999


Q ss_pred             CcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        344 GEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       344 GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                      |++++|+|||++  |||.             .|.+                   ..||||++|+|+|||++|++
T Consensus       164 G~~~~~~iP~~l--aYG~-------------~g~~-------------------~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         164 GSTWEIYVPSGL--AYGP-------------RSVG-------------------GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             TCEEEEEECGGG--TTTT-------------CCCS-------------------SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHH--CcCC-------------CCCC-------------------CCcCcCCcEEEEEEEEEEEc
Confidence            999999999999  9997             3321                   35999999999999999976

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=9.9e-20  Score=172.83  Aligned_cols=114  Identities=19%  Similarity=0.218  Sum_probs=94.2

Q ss_pred             ccCCCeEEEccCccccccccCcccCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhc---
Q psy11265        264 QVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKH---  340 (945)
Q Consensus       264 ~~~~gk~~~~~g~~~~~~~~~~~~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~---  340 (945)
                      ..|+|.++..+.       .|.++.|+.|++|+|||+|++  .||++||+|+.+++|++|.+|.+.+|+||++++.+   
T Consensus         5 ~~psGl~y~~~~-------~G~G~~p~~gd~V~v~y~g~l--~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~   75 (125)
T d1u79a_           5 VSPSGLAFCDKV-------VGYGPEAVKGQLIKAHYVGKL--ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDG   75 (125)
T ss_dssp             ECTTSCEEEEEE-------CCSSCBCCTTCEEEEEEEEEC--TTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTT
T ss_pred             ECCCCCEEEEEE-------eccCCCCCCCCEEEEEEEeee--cCCcEEecccccCcceeEecCccccccchhhhccchhh
Confidence            346777666553       344678999999999999999  69999999998889999999999999999998854   


Q ss_pred             ---CCCCcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEee
Q psy11265        341 ---MSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQV  415 (945)
Q Consensus       341 ---M~~GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v  415 (945)
                         |++||+++|+|||++  |||..             |..+.              .....||||++|+||||||.+
T Consensus        76 l~~M~~G~k~~v~iP~~l--aYG~~-------------G~~~~--------------~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          76 IPPMLTGGKRTLRIPPEL--AYGDR-------------GAGCK--------------GGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             BCCCBTTCEEEEEECGGG--TTGGG-------------CEEEE--------------TTEEEECTTCCEEEEEEEEEE
T ss_pred             cccccCCCEEEEEECHHH--CCCCC-------------CcCCc--------------CCCCcCCcCCeEEEEEEEEEe
Confidence               999999999999999  99972             21100              011359999999999999986

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.76  E-value=7.1e-19  Score=174.00  Aligned_cols=108  Identities=21%  Similarity=0.376  Sum_probs=89.2

Q ss_pred             cCCCeEEEccCccccccccCcc-cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCC
Q psy11265        265 VSAGKYTIGLGQAKMGFCSDLE-DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI  343 (945)
Q Consensus       265 ~~~gk~~~~~g~~~~~~~~~~~-~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~  343 (945)
                      .++|.++..+..|       .+ ..|..|++|+|||+|++  .||++||++++++.|+.  +|.+.+|+||+++|..|++
T Consensus        32 ~~sGl~y~il~~G-------~G~~~P~~gd~V~v~Y~g~l--~dG~~fds~~~~~~p~~--~~~~~~i~G~~e~l~~M~~  100 (160)
T d1jvwa_          32 LPSGLVFQRIARG-------SGKRAPAIDDKCEVHYTGRL--RDGTVFDSSRERGKPTT--FRPNEVIKGWTEALQLMRE  100 (160)
T ss_dssp             CTTSCEEEEEECC-------CCSBCCCTTCCEEEEEEEEC--TTSCEEEEHHHHTSCEE--ECGGGSCHHHHHHHTTCCT
T ss_pred             CCCCCEEEEEECc-------ccccCCCCCcceEEEEEEEE--ccCCeeeeeccccCccc--cCccccchhHHHHhcCccc
Confidence            3667666554332       23 36899999999999999  59999999988777854  5678999999999999999


Q ss_pred             CcEEEEEecCCccccCCccchhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        344 GEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       344 GE~a~~~i~pe~~~aYG~~~~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                      ||+++|+|||++  |||.             .|..                   ..||||++|+|+|||++|++
T Consensus       101 Ge~~~v~iPp~l--aYG~-------------~g~~-------------------~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_         101 GDRWRLFIPYDL--AYGV-------------TGGG-------------------GMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             TCEEEEEECGGG--TTTT-------------TCSS-------------------SSSCTTCCEEEEEEEEEEGG
T ss_pred             cceeEEEeCHHH--CcCC-------------CCCC-------------------CCcCcCCcEEEEEEEEEEec
Confidence            999999999999  9997             2211                   34999999999999999965

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=5.2e-17  Score=151.42  Aligned_cols=90  Identities=11%  Similarity=0.116  Sum_probs=77.3

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEcccc---chhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKK---FKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g---~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      ++|+.|++|+|||+|++   +|++|+++     +++|.+|.+   .+|+||+++|.+|++||+++|+|||++  |||.  
T Consensus        22 ~~p~~gd~V~v~y~g~~---~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v~ip~~~--ayG~--   89 (115)
T d1kt1a3          22 SNPNEGARVQIHLEGRC---GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRY--GFGE--   89 (115)
T ss_dssp             SCCCTTCEEEEEEEEEE---TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGG--SSCT--
T ss_pred             CCCCCCCEEEEEEEEEe---CCcccccc-----ccCceeeeccccccCchhHhhhccchhhceeEEEeCHHH--CcCC--
Confidence            57999999999999998   78999864     577777764   689999999999999999999999999  9997  


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                 .|.+.                  ..||||++|+|+|||++|++
T Consensus        90 -----------~g~~~------------------~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          90 -----------AGKPK------------------FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             -----------TCBTT------------------TTBCTTCCEEEEEEEEEEEC
T ss_pred             -----------CCCCC------------------CCcCcCCeEEEEEEEEEEEe
Confidence                       22210                  13999999999999999986

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.67  E-value=4.3e-18  Score=168.97  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=125.8

Q ss_pred             ccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccC
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVES   87 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~T   87 (945)
                      .|||.+|+.|+|+.+|+.+||++..|.+++|+..++|+.++.|+.++||+++||++|++++|++.  ++++|+.| +++|
T Consensus         1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~--~~~~id~l-i~~t   77 (166)
T d1xpma1           1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDE--DKKKIGMV-IVAT   77 (166)
T ss_dssp             CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHH--HHHHEEEE-EEEC
T ss_pred             CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccc--cCCCCCeE-EEec
Confidence            38999999999999999999999999999999999999999999999999999999999999884  68999999 8888


Q ss_pred             CcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-eccc
Q psy11265         88 PEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLS  166 (945)
Q Consensus        88 e~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdi  166 (945)
                      .     +..+......+.....|+..+++        .++++.++|.|++.| |+.|..|++  +  ++.+++|| ++|+
T Consensus        78 ~-----~~~~~~p~~a~~v~~~lg~~~~~--------~~~dv~~~C~g~~~a-l~~A~~~i~--~--~~~~~alvV~sd~  139 (166)
T d1xpma1          78 E-----SAVDAAKAAAVQIHNLLGIQPFA--------RCFEMKEACYAATPA-IQLAKDYLA--T--RPNEKVLVIATDT  139 (166)
T ss_dssp             S-----SCSBSSSCHHHHHHHHTTCCSSC--------EEEEEESTTTTHHHH-HHHHHHHHT--T--CTTCEEEEEEEEE
T ss_pred             c-----ccccccchhHHHHHHhhccccce--------EEeeecccHHHHHHH-HHHHhhHHh--c--CCCCeEEEEEEce
Confidence            8     33344444444455667666666        789999999999999 999999996  3  36788999 9999


Q ss_pred             ccccccCCCC
Q psy11265        167 DVQDRLDARR  176 (945)
Q Consensus       167 a~y~~~~~~~  176 (945)
                      ..|....+.+
T Consensus       140 ~~~~~~~~~~  149 (166)
T d1xpma1         140 ARYGLNSGGE  149 (166)
T ss_dssp             ECCCTTCSSG
T ss_pred             EeccCCCCCC
Confidence            8887654443

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-15  Score=141.29  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=74.7

Q ss_pred             cCCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEcccc---chhhhHHHHHhcCCCCcEEEEEecCCccccCCccc
Q psy11265        287 DINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKK---FKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVS  363 (945)
Q Consensus       287 ~~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g---~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~  363 (945)
                      .+|..|+.|+|||+|++  .+| .|+++     +.+|..+.+   ++|+||+++|.+|++||+++++|||++  |||.  
T Consensus        22 ~~p~~gd~V~v~y~g~~--~~~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~ip~~~--ayG~--   89 (117)
T d1q1ca2          22 AKPNEGAIVEVALEGYY--KDK-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGS--   89 (117)
T ss_dssp             CCCCTTCEEEEEEEEEE--TTE-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGG--TTTT--
T ss_pred             CCCCCCCEEEEEEEEEe--CCC-cEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEEEECHHH--hCcc--
Confidence            47999999999999999  355 56654     456666553   689999999999999999999999999  9997  


Q ss_pred             hhhHhhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        364 KTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       364 ~~lr~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                 .|.+                  ...|||+++|+|+|||++|++
T Consensus        90 -----------~g~~------------------~~~Ipp~s~l~f~veL~~~~~  114 (117)
T d1q1ca2          90 -----------VGKE------------------KFQIPPNAELKYELHLKSFEK  114 (117)
T ss_dssp             -----------TCBG------------------GGTBCTTCCEEEEEEEEEEEC
T ss_pred             -----------cCCC------------------CCccCcCCeEEEEEEEEEEEe
Confidence                       2321                  124999999999999999987

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.53  E-value=1.8e-15  Score=147.97  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCC-------------CCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCc
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRK-------------LGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSL  355 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~-------------~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~  355 (945)
                      .++|+.|+|||+|++  .||++||||++             +++|++|.+|.|++|||||++|.+|++||+++|+|||+.
T Consensus         2 v~~G~~V~v~Y~~~~--~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKL--ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECC--TTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             ccCCCEEEEEEEEEE--CCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHH
Confidence            367999999999999  69999999963             457999999999999999999999999999999999999


Q ss_pred             cccCCccchhh
Q psy11265        356 VSAYPFVSKTL  366 (945)
Q Consensus       356 ~~aYG~~~~~l  366 (945)
                        |||.+++.+
T Consensus        80 --ayG~~d~~~   88 (151)
T d1ix5a_          80 --AYGNRNEML   88 (151)
T ss_dssp             --SSCSCCSTT
T ss_pred             --hccccccCc
Confidence              999877654

>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.6e-13  Score=132.74  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      |..+|.++..|+|+..|+.+||++..|.++.+....+|..++.++.+.|+..+||++|++++|++.+++|++|+.| +++
T Consensus         1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~Aa~~al~~a~~~~~~Id~l-i~~   79 (174)
T d1hnja1           1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLI-VVA   79 (174)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-EEE
T ss_pred             CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceeeecCCCccchHHHHHHHHHhhhhcccccccccEE-EEe
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999988 888


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |.     +..+......+.....|+.+ ++        .++++.++|.|++.| |+.|..+++  +  ++.+++|| ++|
T Consensus        80 s~-----~~~~~~P~~a~~v~~~Lgl~-~~--------~~~di~~~C~g~~~a-l~~A~~~i~--s--g~~~~~Lvv~~e  140 (174)
T d1hnja1          80 TT-----SATHAFPSAACQIQSMLGIK-GC--------PAFDVAAACAGFTYA-LSVADQYVK--S--GAVKYALVVGSD  140 (174)
T ss_dssp             CS-----CCSCSSSCHHHHHHHHHTCC-SS--------CEEEECCGGGHHHHH-HHHHHHHHH--T--TSCSEEEEEEEE
T ss_pred             cC-----CccccccchhhhhhhccCCC-ch--------hhhhhhhhhccHHHH-HHHHHHHHh--c--CCcceeEEEeee
Confidence            88     34333333333444556653 56        678999999999999 888889996  3  35688998 988


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      ..
T Consensus       141 ~~  142 (174)
T d1hnja1         141 VL  142 (174)
T ss_dssp             CH
T ss_pred             hh
Confidence            65

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=1e-13  Score=137.08  Aligned_cols=118  Identities=33%  Similarity=0.465  Sum_probs=100.0

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      .|||.+++.|+|+.+++.+|+++..|.+++|+..++|++++.|++++||+++||++                        
T Consensus         1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~~~~~id~li~~t~~~   80 (166)
T d1xpma1           1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESA   80 (166)
T ss_dssp             CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHHHHHHEEEEEEECSSC
T ss_pred             CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccccCCCCCeEEEecccc
Confidence            58999999999999999999999999999999999999999999999999999999                        


Q ss_pred             --------------cCcchhhHHH---HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec-cccccccccccc
Q psy11265        549 --------------LSIQCYLGAL---DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS-LARLAYNDFISA  610 (945)
Q Consensus       549 --------------Lsl~~~~~~l---daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as-~ary~~~~~~~~  610 (945)
                                    |+++....+.   .+|.+..   .||+.|.       +|+..+...+.||+.+ ++.+.+++   +
T Consensus        81 ~~~~p~~a~~v~~~lg~~~~~~~~dv~~~C~g~~---~al~~A~-------~~i~~~~~~~alvV~sd~~~~~~~~---~  147 (166)
T d1xpma1          81 VDAAKAAAVQIHNLLGIQPFARCFEMKEACYAAT---PAIQLAK-------DYLATRPNEKVLVIATDTARYGLNS---G  147 (166)
T ss_dssp             SBSSSCHHHHHHHHTTCCSSCEEEEEESTTTTHH---HHHHHHH-------HHHTTCTTCEEEEEEEEEECCCTTC---S
T ss_pred             ccccchhHHHHHHhhccccceEEeeecccHHHHH---HHHHHHh-------hHHhcCCCCeEEEEEEceEeccCCC---C
Confidence                          5544333333   4999988   4777777       7777775555677666 88888887   7


Q ss_pred             cCcccccchhhhH
Q psy11265        611 TDRSQYEGAEAFA  623 (945)
Q Consensus       611 ~E~tqgaGAvA~l  623 (945)
                      .+++.|+||+|+|
T Consensus       148 ~~~~fGDGA~A~l  160 (166)
T d1xpma1         148 GEPTQGAGAVAMV  160 (166)
T ss_dssp             SGGGCEEEEEEEE
T ss_pred             CCccCCCeeEEEE
Confidence            8899999999986

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.21  E-value=9.9e-12  Score=109.42  Aligned_cols=84  Identities=17%  Similarity=0.186  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD  368 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~  368 (945)
                      +..||.|+|+|+|++   ||++|+++..  +.+.|.+|.+++||||+++|.+|++||+..|.|++..  .|+..      
T Consensus         2 ~a~GD~V~idy~g~~---dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~--~y~~~------   68 (85)
T d1hxva_           2 LANGDIAIIDFTGIV---DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS--DYHVK------   68 (85)
T ss_dssp             CCSSEEEEEEEEEEE---TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCT--TSSSS------
T ss_pred             CCCCCEEEEEEEEEE---CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChh--hcCcc------
Confidence            567999999999998   8999998854  6789999999999999999999999999999999887  67751      


Q ss_pred             hhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeee
Q psy11265        369 AAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE  416 (945)
Q Consensus       369 i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~  416 (945)
                                                     -.+|.++.|+|+|++|+
T Consensus        69 -------------------------------~laGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          69 -------------------------------ELQSKPVTFEVVLKAIK   85 (85)
T ss_dssp             -------------------------------GGGSCCCEEEEEECCBC
T ss_pred             -------------------------------cCCCCcEEEEEEEEEeC
Confidence                                           13688999999999874

>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=99.14  E-value=1.1e-11  Score=123.97  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             cccceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhccccccc
Q psy11265          7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVE   86 (945)
Q Consensus         7 ~~VGI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~   86 (945)
                      ..-.|.++..|+|+..|+.+|+++..|.++++.....|.+++.++.+.|+..+||+.|++++|++.+++|++|+.| +++
T Consensus         8 ~~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~~~~~~e~~~~ma~~Aa~~aL~~a~~~~~dId~l-i~~   86 (181)
T d1mzja1           8 RFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLV-VVS   86 (181)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE-EEE
T ss_pred             CccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceehhhccCCcHHHHhHHHHHhhhhhccCChhHCeEE-EEe
Confidence            3478999999999999999999999999998887778999999999999999999999999999999999999988 888


Q ss_pred             CCcccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecc
Q psy11265         87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKL  165 (945)
Q Consensus        87 Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asd  165 (945)
                      |.     +.........+.....+. ..|+        .++++.++|.|++.| |..|..|++  +  ++.+++|| ++|
T Consensus        87 s~-----~~~~~~p~~a~~v~~~l~-~~~~--------~~~Dv~~~C~g~~~a-L~~A~~~i~--~--~~~~~~LvV~~e  147 (181)
T d1mzja1          87 TM-----TNFVHTPPLSVAIAHELG-ADNA--------GGFDLSAACAGFCHA-LSIAADAVE--S--GGSRHVLVVATE  147 (181)
T ss_dssp             CS-----CCCCCSSCHHHHHHHHHT-CTTC--------EEEEEECGGGHHHHH-HHHHHHHHH--H--SSCSCEEEEEEE
T ss_pred             cc-----CCccccccHHHHHHHhhc-CCCc--------cceeHHhhhccHHHH-HHHHhCHhh--c--CCCceeEEeeec
Confidence            88     222223323222223343 3355        678999999999999 999999996  3  35688999 988


Q ss_pred             cc
Q psy11265        166 SD  167 (945)
Q Consensus       166 ia  167 (945)
                      ..
T Consensus       148 ~~  149 (181)
T d1mzja1         148 RM  149 (181)
T ss_dssp             EG
T ss_pred             cc
Confidence            65

>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=4.6e-11  Score=118.45  Aligned_cols=137  Identities=13%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             ceeeeeeecCCccccHHHHHhhcCCCcccchhccCCccccCCCCCccHHHHHHHHHHHHHHhccCCHHhhcccccccCCc
Q psy11265         10 GILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPE   89 (945)
Q Consensus        10 GI~ai~~y~p~~yvd~~~L~~~~gv~~~Kyt~GLGq~~m~~~~~~EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~   89 (945)
                      ||.+|..|+|+..|+.+++++.-|.+.++...-.|.+++.++.+.|+...|++.|++++|++.+++|++|+.| ++.|..
T Consensus         2 gI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdll-i~~s~t   80 (172)
T d1ub7a1           2 GILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAV-IVATNT   80 (172)
T ss_dssp             EEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEE-EEECSS
T ss_pred             ceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeeeeccccccccHHHHHHHHHHHhhcCcccccceEE-EEeccc
Confidence            8999999999999999999999999988877789999999999999999999999999999999999999988 777761


Q ss_pred             ccccccccccchhhhhhcccccccCccccccCcchhhhhhhhhhhhHHHHHHhhccceEEeecccCCCcceee-ecccc
Q psy11265         90 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus        90 ~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      . +--.|    .........|+.  ++        .++++.++|.|+..+ |..|..|++  +  +..+++|| ++|..
T Consensus        81 ~-~~~~p----~~a~~v~~~Lg~--~~--------~~~di~~~C~g~~~a-l~~a~~~~~--~--~~~~~~Lvv~~e~~  139 (172)
T d1ub7a1          81 P-DALFP----DTAALVQARFGL--KA--------FAYDLLAGCPGWIYA-LAQAHALVE--A--GLAQKVLAVGAEAL  139 (172)
T ss_dssp             C-SEEES----CHHHHHHHHTTC--CC--------EEEEEECSTTHHHHH-HHHHHHHHH--T--TSCSEEEEEEEECG
T ss_pred             c-ccccc----chHHHHHHHhcc--Cc--------cceeehhccccHHHH-HHHHhhhhh--c--CCcceeEEeccccc
Confidence            1 11111    111112233442  33        468999999999999 999999996  3  35688998 88754

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=1.5e-10  Score=119.12  Aligned_cols=67  Identities=16%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             eeeccccccccccccCcccCCCCCCccccCcc----hhHHHHHHHHHHHHhhhccCCCCCCccccceee-eecCCCcccc
Q psy11265        182 EFTRILAAKKENLHKYPFRSETPPGEYLFDGS----YYLESIDDFHRRHYKKYEAGTAWPENVGILGIE-FYFPSQYVDQ  256 (945)
Q Consensus       182 ~~~~~~~~~~~~~~~~Df~rP~~~~~~~vdG~----~YL~~ld~~~~~y~~r~~~~~~~~~~~gi~a~e-i~fh~p~v~m  256 (945)
                      +|+...+.  |+.|+||||||+++.+++|||+    |||+++++||++|.++.+.        .+++++ ++||.||.+|
T Consensus         3 ~~~~~~~~--y~~~~~DF~rP~~~~~pvvDG~~S~~~Yl~~l~~~~~~~~~~~g~--------~~~dfd~~~fH~P~~km   72 (221)
T d1xpma2           3 ALNEDAVA--YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK--------SLADFASLCFHVPFTKM   72 (221)
T ss_dssp             EECSCCEE--EECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTC--------CGGGCSEEEECCSSHHH
T ss_pred             EEeCCCEe--eeccCccccCCCCCCCCeECCcchHHHHHHHHHHHHHHHHHHcCC--------ChhhhheEEeecCchhh
Confidence            35555554  8999999999999999999997    9999999999999998754        456777 9999999999


Q ss_pred             cc
Q psy11265        257 TE  258 (945)
Q Consensus       257 ~e  258 (945)
                      +.
T Consensus        73 ~~   74 (221)
T d1xpma2          73 GK   74 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=1.8e-10  Score=126.95  Aligned_cols=256  Identities=14%  Similarity=0.078  Sum_probs=134.3

Q ss_pred             ccccccceeeccccccchhHhhhhc---CcCcc---ccc---ccccccccccCCC-----------------------cc
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHD---QVSAG---KYT---IGLGQAKMGFCSD-----------------------LE  540 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~---g~d~g---Ky~---~Glgq~~msv~~~-----------------------~E  540 (945)
                      ..-|.+++.|+|...++++|+++.-   +.++.   |..   .-.|.+++.++.+                       +|
T Consensus        11 ~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e   90 (372)
T d1teda_          11 VAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYE   90 (372)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHHh
Confidence            3459999999999999999987763   22232   111   1124444444322                       37


Q ss_pred             hhhhhhhc---------------------------------------cCcchhhHHH----HHHHHhHHHHHHHHhCccc
Q psy11265        541 DINSICLT---------------------------------------LSIQCYLGAL----DACYQGYRAKAAKLTGKEL  577 (945)
Q Consensus       541 DivTma~~---------------------------------------Lsl~~~~~~l----daCy~~~~~~~al~~a~~~  577 (945)
                      ++.+||+.                                       |++...+...    .+|.++.   .||+.|.  
T Consensus        91 ~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~---~aL~~A~--  165 (372)
T d1teda_          91 HAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAM---NALGTAT--  165 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHH---HHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCchHHHHHHhhhccCCceeEeeccccCccHHH---HHHHHHH--
Confidence            78889888                                       4443322211    2799888   4777776  


Q ss_pred             cCCCcceeeecCCcceEEEec-cccccccc---cc-cccCcccccchhhhH-----hhhcccC--ccccccccccccccc
Q psy11265        578 SLGDFDAVLFHTPYCKLVQKS-LARLAYND---FI-SATDRSQYEGAEAFA-----HIKNLED--TYFNRDIEQYFMSHN  645 (945)
Q Consensus       578 ~l~~~~~v~~~~p~~kLV~as-~ary~~~~---~~-~~~E~tqgaGAvA~l-----~i~~~~~--~~~s~d~~Df~Rp~~  645 (945)
                           +++..++-.+.||+++ +..+.+..   .. ......-|+||+|++     .-..+..  .....+..++++...
T Consensus       166 -----~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (372)
T d1teda_         166 -----NYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE  240 (372)
T ss_dssp             -----HHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred             -----HHHhcCCCccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccccccCCCc
Confidence                 6777775555688766 43332221   00 001123488888877     1111111  111122222232210


Q ss_pred             c--------ccccccccccchhchHHhhhhhhHHHhhhhcccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccch
Q psy11265        646 L--------YRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNR  717 (945)
Q Consensus       646 ~--------~~~~~~~g~~s~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~  717 (945)
                      .        ......++........+.+.  .++..+  +.......+..|+|++|++..++.....+.+          
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~--L~~~gl~~~did~~i~Hq~~~~i~~~i~~~L----------  306 (372)
T d1teda_         241 DGIVLGVNHNGITCELSENLPGYIFSGVA--PVVTEM--LWDNGLQISDIDLWAIHPGGPKIIEQSVRSL----------  306 (372)
T ss_dssp             TSEEEEEETTEEEEEECTTHHHHHHHHHH--HHHHHH--HHHTTCCGGGCSCEEECCSCHHHHHHHHHHH----------
T ss_pred             cccccCCCCCcceeechHHHHHHHHHHHH--HHHHHH--HHhcCCCHHHhhhhhccCccHHHHHHHHHHc----------
Confidence            0        00111111111111111111  122222  2233344455678999998866654444433          


Q ss_pred             hhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        718 DIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       718 ~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                             .++.    .|+..+...-++.||+++||++++|..+|++.... -.| ++|++++||+|..
T Consensus       307 -------gl~~----ek~~~s~~~l~~~GN~~sasip~~L~~~l~~g~~~-~g~-d~vll~~fG~G~s  361 (372)
T d1teda_         307 -------GISA----ELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESA-KAI-STGVAFAFGPGVT  361 (372)
T ss_dssp             -------TCCG----GGGHHHHHHHHHHCBCTHHHHHHHHHHHHHSCSSS-SSS-EEEEEEEEETTTE
T ss_pred             -------CCCH----HHhhhhHHHHhccCCcHHHHHHHHHHHHHHhCCCC-CCC-CEEEEEEEcHHHh
Confidence                   1121    23333333346789999999999999999986321 146 8999999999954

>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.35  E-value=8.6e-08  Score=96.69  Aligned_cols=137  Identities=10%  Similarity=-0.035  Sum_probs=95.3

Q ss_pred             eeeeeeecCCccccHHHHHhhc-CC---Cc--ccch---hccCCccccCCCCCc-----------------cHHHHHHHH
Q psy11265         11 ILGIEFYFPSQYVDQTELEKHD-QV---SA--GKYT---IGLGQAKMGFCSDLE-----------------DINSICLTV   64 (945)
Q Consensus        11 I~ai~~y~p~~yvd~~~L~~~~-gv---~~--~Kyt---~GLGq~~m~~~~~~E-----------------Divsla~~a   64 (945)
                      |.++.+|+|..+|+|+|+.++- ..   ++  .|..   ..-|.++..++.+.|                 ....||+.|
T Consensus         3 i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~A   82 (200)
T d1u0ma1           3 LCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPAV   82 (200)
T ss_dssp             ECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999987651 11   11  1221   112566666777766                 578899999


Q ss_pred             HHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh-hhhhhHHHHHHhh
Q psy11265         65 VSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY-STALGYLEQLMLN  143 (945)
Q Consensus        65 ~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k-~acyg~t~alL~~  143 (945)
                      ++++|++.+++|++|+.| +++|-     +..+ .....+.....++..+++        ..+++. .+|.|++.+ |..
T Consensus        83 a~~aL~~ag~~~~dId~l-I~~s~-----t~~~-~P~~aa~v~~~lg~~~~~--------~~~~i~~~gC~g~~~a-l~~  146 (200)
T d1u0ma1          83 IQRALDDAELLATDIDVI-IYVSC-----TGFM-MPSLTAWLINEMGFDSTT--------RQIPIAQLGCAAGGAA-INR  146 (200)
T ss_dssp             HHHHHHHHTCCGGGCSEE-EEECS-----SSCC-SSCHHHHHHHHTTCCTTC--------EEEEECSCGGGHHHHH-HHH
T ss_pred             HHHHHHHcCCChhhhheE-EEecc-----CCCC-cchhHHHHHHHHhcCCCe--------eEeccccchhhHHHHH-HHH
Confidence            999999999999999999 66665     1111 121222223445555555        445664 589999999 999


Q ss_pred             ccceEEeecccCCCcceee-ecccc
Q psy11265        144 SMFSIHINRAAVDTLKTLV-TKLSD  167 (945)
Q Consensus       144 a~~~i~v~~~~~~~~~~LV-asdia  167 (945)
                      |..+++  +  ++.+++|| +++..
T Consensus       147 A~~~l~--~--~~~~~vLvv~~e~~  167 (200)
T d1u0ma1         147 AHDFCT--A--YPEANALIVACEFC  167 (200)
T ss_dssp             HHHHHH--H--STTCEEEEEEEEEG
T ss_pred             HHHHHH--h--CCCCEEEEEEEecc
Confidence            999996  3  36788998 88753

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.2e-06  Score=79.42  Aligned_cols=85  Identities=19%  Similarity=0.187  Sum_probs=69.4

Q ss_pred             CCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhHh
Q psy11265        289 NSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRD  368 (945)
Q Consensus       289 P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr~  368 (945)
                      ...||.|+|+|+|+.   ||+.|++..  .+.+.|.+|.+.+++||+.+|.+|++||+..|.+.--.  .|..       
T Consensus        15 a~~GD~v~id~~~~~---dG~~~~~~~--~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~--d~~~-------   80 (106)
T d1l1pa_          15 VEAEDRVTIDFTGSV---DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPE--EYHA-------   80 (106)
T ss_dssp             CCTTEEEEEEEECCS---SSSCCSTTE--EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCS--SCCC-------
T ss_pred             ccCCCEEEEEEEEEE---CCEECCCCc--ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCC--CCCc-------
Confidence            457999999999987   899998653  36799999999999999999999999999999875322  1221       


Q ss_pred             hhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        369 AAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       369 i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                                                    ---+|.++.|+|+|++|.+
T Consensus        81 ------------------------------~~laGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          81 ------------------------------ENLKGKAAKFAINLKKVEE   99 (106)
T ss_dssp             ------------------------------TTTTTCCEEEEEEEEEEEC
T ss_pred             ------------------------------hhhCCCEEEEEEEEEEecc
Confidence                                          0235889999999999987

>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.13  E-value=2.4e-07  Score=95.65  Aligned_cols=142  Identities=10%  Similarity=-0.011  Sum_probs=93.2

Q ss_pred             ccceeeeeeecCCccccHHHHHhhc-CCC----c-------ccchhccCCccccCCCCC---------------------
Q psy11265          8 NVGILGIEFYFPSQYVDQTELEKHD-QVS----A-------GKYTIGLGQAKMGFCSDL---------------------   54 (945)
Q Consensus         8 ~VGI~ai~~y~p~~yvd~~~L~~~~-gv~----~-------~Kyt~GLGq~~m~~~~~~---------------------   54 (945)
                      .+.|.+|..|+|.+.|++++|+++- .+.    +       .+.-..-|-++..++.+.                     
T Consensus        16 pa~I~giGt~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (235)
T d1bi5a1          16 PATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQ   95 (235)
T ss_dssp             CCEEEEEEEECCSCEEESTTHHHHHHHHTTCTTCHHHHHHHHHHHHHSCCCEEECSCCHHHHHTCHHHHSSSCSCHHHHH
T ss_pred             CcEEEEEEEECCCcEEeHHHHHHHHHHhhccccchhhhhhhhhhhcccCCceeEEecChHhhccCcccccccCccHHHHH
Confidence            3679999999999999999998752 111    0       111112233333343332                     


Q ss_pred             ----ccHHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhhh
Q psy11265         55 ----EDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKY  130 (945)
Q Consensus        55 ----EDivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~k  130 (945)
                          |....||+.|++++|++.++++++|+.| ++.|.     +.-+....+.. .+..+....++       .+.....
T Consensus        96 ~~~~~~~~~la~~Aa~~aL~~a~~~~~dId~l-I~~t~-----t~~~~p~~~a~-~~~~l~~~~~~-------~~~~~~~  161 (235)
T d1bi5a1          96 DMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL-IVCTT-----SGVDMPGADYQ-LTKLLGLRPYV-------KRYMMYQ  161 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEE-EEEES-----SCCCSSCHHHH-HHHHHTCCTTC-------EEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHCcEE-EEecc-----cCCccCccHHH-HHHHHhcCCCc-------eEEeeec
Confidence                4667899999999999999999999999 88887     22111222111 11222222222       2443456


Q ss_pred             hhhhhHHHHHHhhccceEEeecccCCCcceee-eccccc
Q psy11265        131 STALGYLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSDV  168 (945)
Q Consensus       131 ~acyg~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia~  168 (945)
                      .+|.|++.+ |..|..+++  +  ++.+++|| ++|..-
T Consensus       162 ~~C~g~~~a-l~~A~~~i~--~--~~~~~vLvV~~E~~S  195 (235)
T d1bi5a1         162 QGCFAGGTV-LRLAKDLAE--N--NKGARVLVVCSEVTA  195 (235)
T ss_dssp             CCTTHHHHH-HHHHHHHHH--T--STTCEEEEEEEECGG
T ss_pred             CccchHHHH-HHHHHHHHH--c--CCCCeEEEEEeeecc
Confidence            689999999 999999996  2  46789999 988653

>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=5.8e-07  Score=98.32  Aligned_cols=140  Identities=13%  Similarity=0.129  Sum_probs=95.5

Q ss_pred             cceeeeeeecCCccccHHHHHhhc---CCCcc---cch-----hccCCccccCCCC---------------------Ccc
Q psy11265          9 VGILGIEFYFPSQYVDQTELEKHD---QVSAG---KYT-----IGLGQAKMGFCSD---------------------LED   56 (945)
Q Consensus         9 VGI~ai~~y~p~~yvd~~~L~~~~---gv~~~---Kyt-----~GLGq~~m~~~~~---------------------~ED   56 (945)
                      .-|.++..|+|...|+++|++++-   ..++.   |..     .||-+..++.-+.                     .|+
T Consensus        12 a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~   91 (372)
T d1teda_          12 AVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYEH   91 (372)
T ss_dssp             EEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHHhH
Confidence            459999999999999999998873   12222   221     1665655543221                     378


Q ss_pred             HHHHHHHHHHHHHHhccCCHHhhcccccccCCcccccccccccchhhhhhcccccccCccccccCcchhhhhh-hhhhhh
Q psy11265         57 INSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTALG  135 (945)
Q Consensus        57 ivsla~~a~~~Ll~~~~~~~~~Ig~l~~v~Te~~~~~s~wd~s~~d~sk~~~~l~~~Gn~lyk~~~~~~~~e~-k~acyg  135 (945)
                      ...||+.|++++|++.+++|++|+.| +++|.     +.+.. ..-.+.....|+.+.++        ..+.+ ..+|.|
T Consensus        92 ~~~la~~Aa~~aL~~ag~~~~dId~l-I~~t~-----t~~~~-P~~a~~v~~~LGl~~~~--------~~~~~~~~gC~g  156 (372)
T d1teda_          92 AVPLAVDVSKRALAGLPYRAAEIGLL-VLATS-----TGFIA-PGVDVAIVKELGLSPSI--------SRVVVNFMGCAA  156 (372)
T ss_dssp             HHHHHHHHHHHHHTTCCCCGGGEEEE-EEEES-----SCCCS-SCHHHHHHHHHTCCTTC--------EEEEEESCGGGH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHCCEE-EEecc-----CCCCC-chHHHHHHhhhccCCce--------eEeeccccCccH
Confidence            89999999999999999999999999 77776     11111 11112223456655444        33344 358999


Q ss_pred             HHHHHHhhccceEEeecccCCCcceee-eccccc
Q psy11265        136 YLEQLMLNSMFSIHINRAAVDTLKTLV-TKLSDV  168 (945)
Q Consensus       136 ~t~alL~~a~~~i~v~~~~~~~~~~LV-asdia~  168 (945)
                      ++.| |..|..+|+  +  ++.+++|| ++|...
T Consensus       157 ~~~a-L~~A~~~l~--s--g~~~~~LVV~~E~~s  185 (372)
T d1teda_         157 AMNA-LGTATNYVR--A--HPAMKALVVCIELCS  185 (372)
T ss_dssp             HHHH-HHHHHHHHH--H--STTCEEEEEEEEECG
T ss_pred             HHHH-HHHHHHHHh--c--CCCccceeeeehhhc
Confidence            9999 999999996  3  46789999 988643

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.01  E-value=1.1e-06  Score=80.61  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEEEEEEEecCCCcEEecCCCCCcCeEEEccccchhhhHHHHHhcCCCCcEEEEEecCCccccCCccchhhH
Q psy11265        288 INSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLR  367 (945)
Q Consensus       288 ~P~~g~~V~VhY~g~l~~~dGtvfDsS~~~g~P~~f~lG~g~vI~G~e~~v~~M~~GE~a~~~i~pe~~~aYG~~~~~lr  367 (945)
                      .+..|+.|+|.|+|++   ||+.|+...  .+.+.|.+|.+..++||+.+|.+|++||+..|.+.--.  .|..      
T Consensus        23 ~a~~gD~v~id~~~~~---dG~~~~~~~--~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Pe--d~~~------   89 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI---DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE--DYHA------   89 (113)
T ss_dssp             CCCTTCEEEEEEEEES---SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCT--TCSC------
T ss_pred             cccCCCEEEEEEEEEE---CCEEccCCc--cceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCC--cCCc------
Confidence            3568999999999998   899998763  36799999999999999999999999999888774322  2221      


Q ss_pred             hhhcccCCCCcccccccccccccccccccccccCCCCcEEEEEEEEeeeC
Q psy11265        368 DAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVES  417 (945)
Q Consensus       368 ~i~~~g~~G~~~~~~~~~G~~m~~G~~~~~~~ipp~s~L~FeVELl~v~~  417 (945)
                             .                        --+|.++.|+|+|.+|..
T Consensus        90 -------~------------------------~laGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          90 -------E------------------------NLKGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             -------T------------------------TTSSCEEEECCCEEEEEE
T ss_pred             -------c------------------------ccCCCeEEEEEEEEEEEe
Confidence                   0                        125789999999999976

>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3e-07  Score=90.57  Aligned_cols=120  Identities=24%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             cccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc-----------------------
Q psy11265        492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT-----------------------  548 (945)
Q Consensus       492 ~~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~-----------------------  548 (945)
                      |...|.+++.|+|...++.+++++..|.++.+....+|.+++.+++.+|+..+||++                       
T Consensus         1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~Aa~~al~~a~~~~~~Id~li~~s   80 (174)
T d1hnja1           1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT   80 (174)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEEC
T ss_pred             CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceeeecCCCccchHHHHHHHHHhhhhcccccccccEEEEec
Confidence            346899999999999999999999999999999999999999999999999999998                       


Q ss_pred             -----------------cCcc-hhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-cccc
Q psy11265        549 -----------------LSIQ-CYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYND  606 (945)
Q Consensus       549 -----------------Lsl~-~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~  606 (945)
                                       |++. |..+.+ .+|.+...   ||+.|.       +++..+.-.+.||+.+  .+++ .+.|
T Consensus        81 ~~~~~~~P~~a~~v~~~Lgl~~~~~~di~~~C~g~~~---al~~A~-------~~i~sg~~~~~Lvv~~e~~S~~~~~~d  150 (174)
T d1hnja1          81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTY---ALSVAD-------QYVKSGAVKYALVVGSDVLARTCDPTD  150 (174)
T ss_dssp             SCCSCSSSCHHHHHHHHHTCCSSCEEEECCGGGHHHH---HHHHHH-------HHHHTTSCSEEEEEEEECHHHHSCTTC
T ss_pred             CCccccccchhhhhhhccCCCchhhhhhhhhhccHHH---HHHHHH-------HHHhcCCcceeEEEeeehhhcccCCCC
Confidence                             4443 222222 49999884   666666       6666665455677665  3332 2233


Q ss_pred             cccccCcccccchhhhH
Q psy11265        607 FISATDRSQYEGAEAFA  623 (945)
Q Consensus       607 ~~~~~E~tqgaGAvA~l  623 (945)
                      .  ..-...|+||.|++
T Consensus       151 ~--~~~~lfGDgA~A~v  165 (174)
T d1hnja1         151 R--GTIIIFGDGAGAAV  165 (174)
T ss_dssp             H--HHHTTBCCEEEEEE
T ss_pred             C--CeEEEeceeeEEEE
Confidence            1  01123577877765

>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=97.88  E-value=9.7e-07  Score=87.42  Aligned_cols=119  Identities=19%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             ccccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc------------------------
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT------------------------  548 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~------------------------  548 (945)
                      ...|.+++.|+|..+++.+++++..+.++++.....|.+++.++..+|+..+||+.                        
T Consensus         9 ~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~~~~~~e~~~~ma~~Aa~~aL~~a~~~~~dId~li~~s~   88 (181)
T d1mzja1           9 FSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVSTM   88 (181)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECS
T ss_pred             ccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceehhhccCCcHHHHhHHHHHhhhhhccCChhHCeEEEEecc
Confidence            36799999999999999999999999888887778999999999999999999998                        


Q ss_pred             ----------------cCc-chhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccc-ccccc
Q psy11265        549 ----------------LSI-QCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARL-AYNDF  607 (945)
Q Consensus       549 ----------------Lsl-~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary-~~~~~  607 (945)
                                      |++ +|..+.+ .+|.+..   .||+.|.       +|+..+...+.||+.+  .+++ .+.|.
T Consensus        89 ~~~~~~p~~a~~v~~~l~~~~~~~~Dv~~~C~g~~---~aL~~A~-------~~i~~~~~~~~LvV~~e~~s~~~~~~d~  158 (181)
T d1mzja1          89 TNFVHTPPLSVAIAHELGADNAGGFDLSAACAGFC---HALSIAA-------DAVESGGSRHVLVVATERMTDVIDLADR  158 (181)
T ss_dssp             CCCCCSSCHHHHHHHHHTCTTCEEEEEECGGGHHH---HHHHHHH-------HHHHHSSCSCEEEEEEEEGGGGSCSSCT
T ss_pred             CCccccccHHHHHHHhhcCCCccceeHHhhhccHH---HHHHHHh-------CHhhcCCCceeEEeeeccccccCCCCCc
Confidence                            222 1221112 3999888   4777776       7777765555688766  3332 23331


Q ss_pred             ccccCcccccchhhhH
Q psy11265        608 ISATDRSQYEGAEAFA  623 (945)
Q Consensus       608 ~~~~E~tqgaGAvA~l  623 (945)
                        ......|+||.|++
T Consensus       159 --~~~~lfGDGAaA~l  172 (181)
T d1mzja1         159 --SLSFLFGDGAGAAV  172 (181)
T ss_dssp             --TTTTTBCEEEEEEE
T ss_pred             --ceEEEeeeeeEEEE
Confidence              22345688988875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.85  E-value=2.8e-06  Score=81.89  Aligned_cols=46  Identities=33%  Similarity=0.627  Sum_probs=44.1

Q ss_pred             hhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHH
Q psy11265        423 QESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE  468 (945)
Q Consensus       423 ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le  468 (945)
                      +|+|+|+.+||++.+..++++||.+|+.|+|..|+..|.+|+.+++
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~   46 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLE   46 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999874

>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=9.9e-07  Score=86.63  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             ccccceeeccccccchhHhhhhcCcCcccccccccccccccCCCcchhhhhhhc--------------------------
Q psy11265        495 GILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT--------------------------  548 (945)
Q Consensus       495 GI~ai~~Y~P~~~l~~~el~~~~g~d~gKy~~Glgq~~msv~~~~EDivTma~~--------------------------  548 (945)
                      ||.+++.|+|..+++.+++++..+.+.++...-.|.+++.++.+.|+...||+.                          
T Consensus         2 gI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdlli~~s~t~   81 (172)
T d1ub7a1           2 GILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATNTP   81 (172)
T ss_dssp             EEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECSSC
T ss_pred             ceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeeeeccccccccHHHHHHHHHHHhhcCcccccceEEEEecccc
Confidence            899999999999999999999989888887888999999999999999999987                          


Q ss_pred             --------------cCcchhhHHH-HHHHHhHHHHHHHHhCccccCCCcceeeecCCcceEEEec--cccccc-cccccc
Q psy11265        549 --------------LSIQCYLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKS--LARLAY-NDFISA  610 (945)
Q Consensus       549 --------------Lsl~~~~~~l-daCy~~~~~~~al~~a~~~~l~~~~~v~~~~p~~kLV~as--~ary~~-~~~~~~  610 (945)
                                    |+.+|..+.+ .+|.+..   .+|..|.       +|+..+.-.+.||+.+  .+++-. .+  ..
T Consensus        82 ~~~~p~~a~~v~~~Lg~~~~~~di~~~C~g~~---~al~~a~-------~~~~~~~~~~~Lvv~~e~~S~~~~~~d--~~  149 (172)
T d1ub7a1          82 DALFPDTAALVQARFGLKAFAYDLLAGCPGWI---YALAQAH-------ALVEAGLAQKVLAVGAEALSKIIDWND--RA  149 (172)
T ss_dssp             SEEESCHHHHHHHHTTCCCEEEEEECSTTHHH---HHHHHHH-------HHHHTTSCSEEEEEEEECGGGTSCTTC--HH
T ss_pred             cccccchHHHHHHHhccCccceeehhccccHH---HHHHHHh-------hhhhcCCcceeEEecccccccccCCCC--cC
Confidence                          6666655544 4888877   4666666       6777765455677666  554322 22  01


Q ss_pred             cCcccccchhhhH
Q psy11265        611 TDRSQYEGAEAFA  623 (945)
Q Consensus       611 ~E~tqgaGAvA~l  623 (945)
                      ....-|+||.|++
T Consensus       150 ~~~lfGDgAaA~l  162 (172)
T d1ub7a1         150 TAVLFGDGGGAAV  162 (172)
T ss_dssp             HHTTBCCEEEEEE
T ss_pred             eEEEecceeEEEE
Confidence            1123488888765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.74  E-value=4.2e-06  Score=79.58  Aligned_cols=46  Identities=33%  Similarity=0.598  Sum_probs=44.0

Q ss_pred             hhhhhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHH
Q psy11265        422 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL  467 (945)
Q Consensus       422 ~ke~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~L  467 (945)
                      +++.|+|+.+||++.+..+|++||.+|+.|+|.+|+..|.+|+.++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~   47 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF   47 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4789999999999999999999999999999999999999999865

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.4e-05  Score=77.20  Aligned_cols=44  Identities=34%  Similarity=0.642  Sum_probs=42.1

Q ss_pred             hhccCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHH
Q psy11265        425 SWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE  468 (945)
Q Consensus       425 ~w~ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le  468 (945)
                      +|+|+.+||++.+..+|++||.+|++|+|..|+..|++|+.++.
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~   44 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE   44 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            69999999999999999999999999999999999999999763

>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.72  E-value=0.0003  Score=66.91  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+.-|||++|++..++.....+.+                 .++    ..|+..+...-++.||+.+||+++.|..+
T Consensus        57 g~~~~did~~~~Hq~~~~i~~~i~~~L-----------------gl~----~~k~~~s~~~l~~~GN~~sasi~~~L~~~  115 (148)
T d1u0ma2          57 GWDASDLDFYIVHAGGPRILDDLSTFL-----------------EVD----PHAFRFSRATLTEYGNIASAVVLDALRRL  115 (148)
T ss_dssp             SCCSSCCSCCEEECSHHHHHHHHHHHS-----------------CSC----GGGGHHHHHHHHHTCBCTTHHHHHHHHHH
T ss_pred             CCCHHHCCEEEECCCCHHHHHHHHHHh-----------------CCC----hhhhhHHHHHHHhcCCCCcchHHHHHHHH
Confidence            444556688999988755533333322                 122    24555555555899999999999999999


Q ss_pred             hccCCccccCCCcEEEEEecCCCcccc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNIKA  787 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~~~  787 (945)
                      +++...+  +| ++|+++++|.|....
T Consensus       116 ~~~~~~~--~G-d~ill~gfG~G~s~~  139 (148)
T d1u0ma2         116 FDEGGVE--EG-ARGLLAGFGPGITAE  139 (148)
T ss_dssp             HHSCCCC--SS-CCCEEEEEETTTEEE
T ss_pred             HHcCCCC--CC-CEEEEEEEchHhEee
Confidence            9875433  89 999999999998654

>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=96.50  E-value=0.00071  Score=64.57  Aligned_cols=81  Identities=14%  Similarity=0.024  Sum_probs=55.5

Q ss_pred             cccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHH
Q psy11265        679 DTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLV  758 (945)
Q Consensus       679 ~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~  758 (945)
                      ......+..|+|++|++..++...-.+.+                 .++    ..|+-+.  .-+++||+.+||++++|.
T Consensus        60 ~~gl~~~dId~~i~Hq~~~~~~~~v~~~l-----------------gi~----~ek~~~~--~~~~~GNt~Sasip~~L~  116 (153)
T d1mzja2          60 VAGLTVGDLVAFVPHQANLRIIDVLVDRL-----------------GVP----EHVVVSR--DAEDTGNTSSASVALALD  116 (153)
T ss_dssp             TTTCCGGGCSEEEECCSCHHHHHHHHHHH-----------------TCC----TTSEECC--THHHHCBCTTHHHHHHHH
T ss_pred             HhCCCcccCCEEEEcCCcHHHHHHHHHHh-----------------CCC----chhcchh--hhhhcCCcccchHHHHHH
Confidence            33455566688999998865543332322                 111    1333332  237899999999999999


Q ss_pred             HHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        759 SLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       759 SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      .++++...+  +| ++|+|+++|.|-.
T Consensus       117 ~~~~~~~~~--~G-d~ill~~fG~G~s  140 (153)
T d1mzja2         117 RLVRSGAVP--GG-GPALMIGFGAGLS  140 (153)
T ss_dssp             HHHHHTSSC--TT-CEEEEEEEETTTE
T ss_pred             HHHHcCCCC--CC-CEEEEEEEchhhh
Confidence            999875433  89 9999999999954

>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0017  Score=61.50  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+.-|++++|++..++...-.+.+                 .++.    .|+-.+  .-.+.||+.++|+++.|..+
T Consensus        62 gl~~~dId~~i~Hqa~~~i~~~v~~~l-----------------gl~~----ek~~~~--~~~~~GNt~sasip~~L~~a  118 (148)
T d1u6ea2          62 GVRPDQIDVFVPHQANSRINELLVKNL-----------------QLRP----DAVVAN--DIEHTGNTSAASIPLAMAEL  118 (148)
T ss_dssp             TCCGGGCCEEEECCSCHHHHHHHHHHH-----------------TCCT----TCEECC--THHHHCBCGGGHHHHHHHHH
T ss_pred             CCCcccccEEEeccccHHHHHHHHHhc-----------------CCCc----hhhhhh--hHHhhCCCccchHHHHHHHH
Confidence            344455678889988866543322322                 1111    122221  23789999999999999999


Q ss_pred             hccCCccccCCCcEEEEEecCCCcc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      +++...+  +| ++|+|++||.|..
T Consensus       119 ~~~g~i~--~G-d~vll~gfG~G~s  140 (148)
T d1u6ea2         119 LTTGAAK--PG-DLALLIGYGAGLS  140 (148)
T ss_dssp             HHHTSSC--TT-CEEEEEEEETTTE
T ss_pred             HHcCCCC--CC-CEEEEEEEchhhh
Confidence            9976433  89 9999999999965

>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0029  Score=59.36  Aligned_cols=81  Identities=12%  Similarity=0.075  Sum_probs=54.5

Q ss_pred             ccccCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHH
Q psy11265        678 EDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCL  757 (945)
Q Consensus       678 ~~~~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L  757 (945)
                      +......+.-|++++|++-.++...-.+.+                 .++.    .|+-   ..-.+.||+.+||+.++|
T Consensus        55 ~~~g~~~~dId~~i~Hq~~~~~~~~~~~~l-----------------~l~~----~k~~---~~~~~~GN~~sasip~~L  110 (143)
T d1hnja2          55 AANNLDRSQLDWLVPHQANLRIISATAKKL-----------------GMSM----DNVV---VTLDRHGNTSAASVPCAL  110 (143)
T ss_dssp             HHTTCCGGGCCEEEECCSCHHHHHHHHHHT-----------------TCCG----GGBC---CCHHHHCBCGGGHHHHHH
T ss_pred             HHhhhcccccceEEeccCchHHHHHHHHhC-----------------ccch----hhhh---hhhhhhcccccchHHHHH
Confidence            333455556678999988754432222222                 1121    2232   223689999999999999


Q ss_pred             HHHhccCCccccCCCcEEEEEecCCCcc
Q psy11265        758 VSLLIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       758 ~SlL~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      ..++++...+  +| ++|+|+++|.|..
T Consensus       111 ~~~~~~~~~~--~G-d~vll~g~G~G~s  135 (143)
T d1hnja2         111 DEAVRDGRIK--PG-QLVLLEAFGGGFT  135 (143)
T ss_dssp             HHHHHTTCSC--TT-CEEEEEEEETTTE
T ss_pred             HHHHHhCCCC--CC-CEEEEEEEehhhh
Confidence            9999986433  89 9999999999964

>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0034  Score=59.27  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ....+.-|+|++|++..++.....+.+                 .++.    .|+-..  + .+.||+.+||+.+.|..+
T Consensus        61 g~~~~dId~~i~Hqa~~~~~~~i~~~l-----------------gi~~----~k~~~~--~-~~~Gn~~sasip~~L~~~  116 (149)
T d1ub7a2          61 GLTPEDIRLFVPHQANLRIIDAARERL-----------------GLPW----ERVAVN--V-DRYGNTSTASIPLALKEA  116 (149)
T ss_dssp             TCCGGGCSEEEECCSCHHHHHHHHHTT-----------------TCCG----GGBCCC--H-HHHCBCGGGHHHHHHHHH
T ss_pred             ccccccccEEEeeccchHHHHHHHhhc-----------------cchh----hHHHHH--H-HHhcCCcchhHHHHHHHH
Confidence            444556688999988866544333332                 1111    233322  3 578999999999999999


Q ss_pred             hccCCccccCCCcEEEEEecCCCcc
Q psy11265        761 LIQTPWERLQGMSRIGLFSYGSDNI  785 (945)
Q Consensus       761 L~~~~~~~L~G~~rI~l~s~GsG~~  785 (945)
                      ++....+  +| ++|+|+++|.|..
T Consensus       117 ~~~~~~~--~G-d~vll~g~G~G~s  138 (149)
T d1ub7a2         117 VDAGRIR--EG-DHVLLVSFGAGLT  138 (149)
T ss_dssp             HHHTSSC--TT-CEEEEEEEETTTE
T ss_pred             HHcCCCC--CC-CEEEEEEEchHhh
Confidence            9876433  89 9999999999954

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.45  E-value=0.0038  Score=59.10  Aligned_cols=47  Identities=19%  Similarity=0.396  Sum_probs=43.9

Q ss_pred             CChhhHhhhcccccceehhhhhcccccchhHHHHhhhhhhccCCCCc
Q psy11265        892 NDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT  938 (945)
Q Consensus       892 ~~~~w~~l~~~~~pl~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~~  938 (945)
                      ...+|..++.+..++++|.++|++.+++|-++|++|+.+|+.+|+|.
T Consensus        52 ~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          52 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH
Confidence            35688999999999999999999999999999999999999999885

>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.40  E-value=0.0017  Score=64.39  Aligned_cols=93  Identities=11%  Similarity=0.062  Sum_probs=60.9

Q ss_pred             cccceeeccccccchhHhhhhc-C---cCcc--c---ccccccccccccCCCcc-----------------hhhhhhhc-
Q psy11265        496 ILGIEFYFPSQYVDQTELEKHD-Q---VSAG--K---YTIGLGQAKMGFCSDLE-----------------DINSICLT-  548 (945)
Q Consensus       496 I~ai~~Y~P~~~l~~~el~~~~-g---~d~g--K---y~~Glgq~~msv~~~~E-----------------DivTma~~-  548 (945)
                      |.++++|+|..+++++|+.++- .   -++.  |   .....|.+++.++.+.|                 .+..||+. 
T Consensus         3 i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~A   82 (200)
T d1u0ma1           3 LCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPAV   82 (200)
T ss_dssp             ECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999886642 1   1121  1   22234777788887776                 46778777 


Q ss_pred             --------------------------------------cCcchhhHHH---H-HHHHhHHHHHHHHhCccccCCCcceee
Q psy11265        549 --------------------------------------LSIQCYLGAL---D-ACYQGYRAKAAKLTGKELSLGDFDAVL  586 (945)
Q Consensus       549 --------------------------------------Lsl~~~~~~l---d-aCy~~~~~~~al~~a~~~~l~~~~~v~  586 (945)
                                                            |++...+..+   + +|.++..   ++..|.       +++.
T Consensus        83 a~~aL~~ag~~~~dId~lI~~s~t~~~~P~~aa~v~~~lg~~~~~~~~~i~~~gC~g~~~---al~~A~-------~~l~  152 (200)
T d1u0ma1          83 IQRALDDAELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGA---AINRAH-------DFCT  152 (200)
T ss_dssp             HHHHHHHHTCCGGGCSEEEEECSSSCCSSCHHHHHHHHTTCCTTCEEEEECSCGGGHHHH---HHHHHH-------HHHH
T ss_pred             HHHHHHHcCCChhhhheEEEeccCCCCcchhHHHHHHHHhcCCCeeEeccccchhhHHHH---HHHHHH-------HHHH
Confidence                                                  4444433322   2 7999884   666666       7777


Q ss_pred             ecCCcceEEEec
Q psy11265        587 FHTPYCKLVQKS  598 (945)
Q Consensus       587 ~~~p~~kLV~as  598 (945)
                      .++..+.||+++
T Consensus       153 ~~~~~~vLvv~~  164 (200)
T d1u0ma1         153 AYPEANALIVAC  164 (200)
T ss_dssp             HSTTCEEEEEEE
T ss_pred             hCCCCEEEEEEE
Confidence            776656788766

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.023  Score=52.66  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=33.4

Q ss_pred             HHHhhhccchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        430 EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       430 ~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      .++-++.|+.++++||.+|+.|+|..|+..|++|+.+
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~   39 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL   39 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc
Confidence            3556788999999999999999999999999999984

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.01  E-value=0.014  Score=54.19  Aligned_cols=46  Identities=28%  Similarity=0.427  Sum_probs=40.5

Q ss_pred             ChhhHhhhcccccceehhhhhcccccchhHHHHhhhhhhccCCCCc
Q psy11265        893 DEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT  938 (945)
Q Consensus       893 ~~~w~~l~~~~~pl~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~~  938 (945)
                      ...|.....+.+.+.+|.++|++.+++|-++|++|..+|+.+|+|.
T Consensus        56 ~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~  101 (153)
T d2fbna1          56 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  101 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh
Confidence            4455666667788999999999999999999999999999999985

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.52  E-value=0.034  Score=52.26  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=28.1

Q ss_pred             cchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        437 IPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       437 a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      |+.+|++||.+|+.|+|..|+..|++||..
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~   33 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR   33 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567999999999999999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.027  Score=53.12  Aligned_cols=48  Identities=23%  Similarity=0.406  Sum_probs=44.9

Q ss_pred             CCChhhHhhhcccccceehhhhhcccccchhHHHHhhhhhhccCCCCc
Q psy11265        891 PNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT  938 (945)
Q Consensus       891 p~~~~w~~l~~~~~pl~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~~  938 (945)
                      .++.+|..+..+..++.+|.++|++.+|+|=+++++++.+|+.+|+|.
T Consensus        49 ~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          49 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence            457889999999999999999999999999999999999999999985

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.044  Score=48.33  Aligned_cols=31  Identities=42%  Similarity=0.627  Sum_probs=28.2

Q ss_pred             ccchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        436 SIPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       436 ~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      .++.++++||.+|+.|+|.+|+..|.+|+..
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~   32 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL   32 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4667999999999999999999999999873

>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.16  E-value=0.009  Score=60.52  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             ccccccceeeccccccchhHhhhh
Q psy11265        493 NVGILGIEFYFPSQYVDQTELEKH  516 (945)
Q Consensus       493 ~vGI~ai~~Y~P~~~l~~~el~~~  516 (945)
                      .+.|.+++.|+|..++++++|+++
T Consensus        16 pa~I~giGt~~P~~~v~n~~l~~~   39 (235)
T d1bi5a1          16 PATILAIGTANPANCVEQSTYPDF   39 (235)
T ss_dssp             CCEEEEEEEECCSCEEESTTHHHH
T ss_pred             CcEEEEEEEECCCcEEeHHHHHHH
Confidence            357999999999999999999764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.054  Score=48.46  Aligned_cols=31  Identities=35%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             ccchhhHhcccccccccHHHHHHHHHHHHHH
Q psy11265        436 SIPKLKEDGNTLYKAGNIQGALDKYSTALGY  466 (945)
Q Consensus       436 ~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~  466 (945)
                      .|.+.|+.||.+|+.|+|..|+..|.+|+.+
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~   33 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL   33 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999974

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.23  E-value=0.1  Score=48.52  Aligned_cols=44  Identities=32%  Similarity=0.392  Sum_probs=38.4

Q ss_pred             cCHHHhhhccchhhHhcccccccccHHHHHHHHHHHHHHHHhhh
Q psy11265        428 LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLM  471 (945)
Q Consensus       428 ms~eEkl~~a~~~Ke~GN~~fK~g~y~~A~~kY~rAl~~Le~~~  471 (945)
                      .+.++.+..++.+++.||.+|+.|+|..|+..|.+|+.+++...
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~   61 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR   61 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh
Confidence            34567788899999999999999999999999999999886544

>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Dihydropinosylvin synthase
species: Scots pine (Pinus sylvestris) [TaxId: 3349]

Probab=88.67  E-value=0.1  Score=49.31  Aligned_cols=85  Identities=12%  Similarity=-0.040  Sum_probs=56.3

Q ss_pred             CCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHHh
Q psy11265        682 FNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLL  761 (945)
Q Consensus       682 ~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~SlL  761 (945)
                      .....-|+|++|++-.++-...-+.+                 +++    ..++..|...-++.|||=+||++..|--++
T Consensus        58 ~~~~did~~i~Hqgg~~Ild~v~~~L-----------------~L~----~~k~~~s~~~l~~~GN~sSasip~~L~~~~  116 (156)
T d1u0ua2          58 ISDWNKLFWVVHPGGRAILDRVEAKL-----------------NLD----PTKLIPTRHVMSEYGNMSSACVHFILDQTR  116 (156)
T ss_dssp             CCCGGGSEEEECCSCHHHHHHHHHHH-----------------TCC----TTTTHHHHHHHHHHCBCGGGHHHHHHHHHH
T ss_pred             CChhhCceEeecCCcHHHHHHHHHHh-----------------CCC----cccchhhHHHHhhcCCCCcccHHHHHHHHH
Confidence            34455578999988866543333332                 222    245566655558899999999999998876


Q ss_pred             ccCC----cccc-CCCcEEEEEecCCCccccc
Q psy11265        762 IQTP----WERL-QGMSRIGLFSYGSDNIKAL  788 (945)
Q Consensus       762 ~~~~----~~~L-~G~~rI~l~s~GsG~~~~~  788 (945)
                      +...    .... .| ++|.++.||-|...+.
T Consensus       117 ~~~~~~~~~~~~~~~-~~~~~~gfG~Glt~~~  147 (156)
T d1u0ua2         117 KASLQNGCSTTGEGL-EMGVLFGFGPGLTIET  147 (156)
T ss_dssp             HHHHHHTCSBSBTTB-SEEEEEEEETTTEEEE
T ss_pred             HhhhhccCCCcCCCC-CEEEEEEECHHHhHHH
Confidence            5431    0111 46 8999999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.88  E-value=0.072  Score=49.65  Aligned_cols=46  Identities=30%  Similarity=0.530  Sum_probs=40.3

Q ss_pred             ChhhHhhhcccccceehhhhhcccccchhHHHHhhhhhhccCCCCc
Q psy11265        893 DEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT  938 (945)
Q Consensus       893 ~~~w~~l~~~~~pl~lny~qc~l~~~~yy~v~~h~~~~l~~~~~~~  938 (945)
                      +.+..+++....-+++|.+.|++.+|+|-++|+.|+.+|+.+|++.
T Consensus        66 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  111 (169)
T d1ihga1          66 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  111 (169)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence            4455566677778899999999999999999999999999999885

>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Pyrone synthase (PyS, chalcone synthase 2)
species: Gerbera hybrid cultivar [TaxId: 18101]

Probab=84.79  E-value=0.35  Score=45.62  Aligned_cols=87  Identities=9%  Similarity=-0.015  Sum_probs=56.2

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      ......-++|++|++-.++-....+.+                 +++    ..++..|...-++-|||=++|+++.|-.+
T Consensus        61 gl~~~di~~~v~Hqgg~~Ild~i~~~L-----------------~L~----~~~l~~s~~vl~~yGNtSSaSI~~vL~~~  119 (160)
T d1ee0a2          61 GITDWNSVFWMVHPGGRAILDQVERKL-----------------NLK----EDKLRASRHVLSEYGNLISACVLFIIDEV  119 (160)
T ss_dssp             TCCCGGGSEEEECCSSHHHHHHHHHHT-----------------TCC----TTTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred             cCCccccceEeecCCcHHHHHHHHHHc-----------------CCC----HHHHHHHHHHHHHhCCCccchHHHHHHHH
Confidence            344455578999988855533333332                 122    24556665555889999999999999988


Q ss_pred             hccC--C--cccc-CCCcEEEEEecCCCcccccc
Q psy11265        761 LIQT--P--WERL-QGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       761 L~~~--~--~~~L-~G~~rI~l~s~GsG~~~~~~  789 (945)
                      ++..  +  ...- .+ ++++++.||-|...+..
T Consensus       120 ~~~~~~~~~~~~g~~~-d~~ll~afG~Glt~~~~  152 (160)
T d1ee0a2         120 RKRSMAEGKSTTGEGL-DCGVLFGFGPGMTVETV  152 (160)
T ss_dssp             HHHHHHTTCSBTBTTB-SEEEEEEEETTTEEEEE
T ss_pred             HhhhhhcCCCCcCCCc-CEEEEEEEChHHHHHHH
Confidence            7643  1  0000 23 57999999999876544

>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=83.73  E-value=0.24  Score=46.49  Aligned_cols=88  Identities=10%  Similarity=0.035  Sum_probs=56.5

Q ss_pred             cCCcchHHHHHHhCCCccchHHHHHHhhhccccccchhhHHHhhhcchHHHHhhhchhhhhccccCcccchhHHHHHHHH
Q psy11265        681 YFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSL  760 (945)
Q Consensus       681 ~~~~~~~~~~~~H~p~~~m~~~a~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~kv~psl~~~~~vGN~YTaSlyl~L~Sl  760 (945)
                      .......++|++|++-.++- +++..-|                +++    ..++..|...=++-|||=+||+++.|-.+
T Consensus        56 gl~~~di~~~v~Hqgg~~Il-d~v~~~L----------------~L~----~~~~~~s~~vl~~yGN~SSasi~~vL~~~  114 (154)
T d1bi5a2          56 GISDYNSIFWIAHPGGPAIL-DQVEQKL----------------ALK----PEKMNATREVLSEYGNMSSACVLFILDEM  114 (154)
T ss_dssp             TCCCTTSSEEEECCSSHHHH-HHHHHHH----------------TCC----GGGGHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred             CCCccccceEeeccccHHHH-HHHHHHh----------------CCC----HHHHHHhHHHHHhcCCCCcccHHHHHHHH
Confidence            34445567899998875553 3333222                222    25566665555888999999999999888


Q ss_pred             hccCC----ccccCCCcEEEEEecCCCcccccc
Q psy11265        761 LIQTP----WERLQGMSRIGLFSYGSDNIKALF  789 (945)
Q Consensus       761 L~~~~----~~~L~G~~rI~l~s~GsG~~~~~~  789 (945)
                      +....    .....|-+++.++.||.|...+.-
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~aFG~Glt~~~~  147 (154)
T d1bi5a2         115 RKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETV  147 (154)
T ss_dssp             HHHHHHTTCSBTTTTCSEEEEEEEETTTEEEEE
T ss_pred             HHhhhccCCcccCCCcCEEEEEEEchHHhHHHH
Confidence            76431    011112257899999999876543