Psyllid ID: psy11318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRFRISVPKPKLKPKP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccHHHHHHccccccEEEcccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccccccccccEEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHcccccccccccccccEccccHHHEHEcHcccccccccHccccEccccHHHHHHHHcccccccccccHccccEccccHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mryycnacsknfsakdtlnkhmdihkgvryqceecpkdfstrKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEhfgirhpcsecpktfasRHSLKNHILKIHKAVLYQcnecstskdyltkrdlRRHMklhfngkryhctqcskFYIQESDLMEHMAVHSGvrklttgpikteqtfgvrelrhvgfpmktdhwsnqnrtdlrgsgiapswisngigattppsvmgktklfrapdprfrNALRFrisvpkpklkpkp
Flexible Loop (DISEMBL)
mryycnacsknfsakdtlnKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLhfngkryhctqCSKFYIQESDLMEHMAVHSGvrklttgpikteqtfgvRELRHVGFpmktdhwsnqnrTDLRGSGIAPSWISNGigattppsvmgKTKLfrapdprfrnalrfrisvpkpklkpkp
Low Complexity Region (SEG)
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRFRISVPKPKLKPKP
Disordered region (IsUnstruct)
**YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSN*****LRGSGIAPSWISNGIGA***************************************
Disordered Region (DISOPRED)
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNAL***************
Disordered Region (DISEMBL)
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRFRISVPKPKLKPKP
Disordered Region (DISPRO)
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRFRISVPK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMKTDHWSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRFRISVPKPKLKPKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
P08042	402	Zinc finger protein 1 OS=	yes	N/A	0.615	0.402	0.390	1e-22
O75123	536	Zinc finger protein 623 O	yes	N/A	0.619	0.304	0.389	2e-22
Q5RC79	407	Zinc finger protein 1 hom	no	N/A	0.615	0.398	0.390	3e-22
Q6P2D0	407	Zinc finger protein 1 hom	no	N/A	0.623	0.402	0.385	4e-22
Q68DY9	489	Zinc finger protein 772 O	no	N/A	0.612	0.329	0.382	9e-22
Q5R8X1	613	Zinc finger protein 665 O	no	N/A	0.615	0.264	0.366	2e-21
Q7Z340	670	Zinc finger protein 551 O	no	N/A	0.619	0.243	0.372	2e-21
A2T7F4	604	Zinc finger and SCAN doma	N/A	N/A	0.619	0.269	0.374	2e-21
Q9H7R5	613	Zinc finger protein 665 O	no	N/A	0.615	0.264	0.372	2e-21
Q29RZ4	425	Zinc finger protein 2 OS=	no	N/A	0.619	0.383	0.363	3e-21

>sp|P08042|ZFP1_MOUSE Zinc finger protein 1 OS=Mus musculus GN=Zfp1 PE=2 SV=3

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           + CN C K FS K  L  H  IH G + Y+C+ C K FS +  L +HQ  IH G + F+C
Sbjct: 182 FVCNYCDKTFSFKSLLVSHKRIHTGEKPYECDVCQKTFSHKANLIKHQR-IHTGEKPFEC 240

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
            +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct: 241 PECGKAFTHQSNLIVHQRAHMEKKPYGCSECGKTFAQKFELTTH-QRIHTGERPYECNEC 299

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           +  K +  K +L  H K+H   KRY C++C K +IQ S L+ H   H+G
Sbjct: 300 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTG 346

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|O75123|ZN623_HUMAN Zinc finger protein 623 OS=Homo sapiens GN=ZNF623 PE=2 SV=2

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 9/172 (5%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CN C K+F    +L +H  IH  V+ Y+C+EC K F  R  L +HQ  IH G R F+C
Sbjct: 263 YECNECGKSFIRSSSLIRHYQIHTEVKQYECKECGKAFRHRSDLIEHQR-IHTGERPFEC 321

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAV-LYQCNE 118
           N+C +A+     L+ H  + H G R + C+EC K F+   +   H  +IH    LY+CNE
Sbjct: 322 NECGKAFIRSSKLIQHQRI-HTGERPYVCNECGKRFSQTSNFTQH-QRIHTGEKLYECNE 379

Query: 119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
           C   K +     L RH K+H   + Y C +C K ++Q++ L EH  +HSG R
Sbjct: 380 CG--KAFFLSSYLIRHQKIHTGERVYECKECGKAFLQKAHLTEHQKIHSGDR 429

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5RC79|ZFP1_PONAB Zinc finger protein 1 homolog OS=Pongo abelii GN=ZFP1 PE=2 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 7/169 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           + C  C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct: 184 FICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 242

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
            +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct: 243 PECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNEC 301

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G
Sbjct: 302 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTG 348

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q6P2D0|ZFP1_HUMAN Zinc finger protein 1 homolog OS=Homo sapiens GN=ZFP1 PE=2 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 7/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           + C  C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct: 184 FICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 242

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
            +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct: 243 PECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNEC 301

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
           +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G +
Sbjct: 302 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEK 350

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q68DY9|ZN772_HUMAN Zinc finger protein 772 OS=Homo sapiens GN=ZNF772 PE=2 SV=2

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 9/170 (5%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG-IRFQC 60
           Y C+ C K FS KD+L +H  +H G R Y+C EC K FS +  L QHQ  IH G + ++C
Sbjct: 266 YKCSECGKTFSRKDSLVQHQRVHTGERPYECGECGKTFSRKPILAQHQR-IHTGEMPYEC 324

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNE 118
             C + +    +L+ H  + H G R + CSEC K ++ + +L  H   IH     Y+C+E
Sbjct: 325 GICGKVFNHSSNLIVHQRV-HTGARPYKCSECGKAYSHKSTLVQH-ESIHTGERPYECSE 382

Query: 119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           C   K +  K  L +H  +H   + Y C  C KF+ Q SDL+ H  VH+G
Sbjct: 383 C--GKYFGHKYRLIKHWSVHTGARPYECIACGKFFSQSSDLIAHQRVHNG 430

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R8X1|ZN665_PONAB Zinc finger protein 665 OS=Pongo abelii GN=ZNF665 PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CN C K FS   +L  H  IH G + Y+C +C K F    YL  HQ  IH G + ++C
Sbjct: 449 YKCNECGKAFSVHSSLTTHQTIHTGQKPYKCNDCGKVFRHNSYLAVHQR-IHTGEKPYKC 507

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A+ +  +L  H ++      + C+EC K F     L NH  +IH     Y+CNEC
Sbjct: 508 NECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNEC 566

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
              K +  +  L  HM +H   K Y C +C K + Q S+L +H  +HSG
Sbjct: 567 G--KAFSVRSTLTTHMAIHTGDKPYKCNECGKVFTQNSNLAKHRRIHSG 613

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q7Z340|ZN551_HUMAN Zinc finger protein 551 OS=Homo sapiens GN=ZNF551 PE=2 SV=3

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C+ C K+FS K  L +H  +H G R Y+C EC K F+ +  L QH+  IH G R ++C
Sbjct: 475 YECSECEKSFSRKFILIQHQRVHTGERPYECSECGKSFTRKSDLIQHRR-IHTGTRPYEC 533

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNE 118
           ++C ++++ +  L+ H  L H G R + CSEC K+F+   SL  H  ++H     Y+C+E
Sbjct: 534 SECGKSFRQRSGLIQHRRL-HTGERPYECSECGKSFSQSASLIQH-QRVHTGERPYECSE 591

Query: 119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
           C   K +     L +H + H   + Y C+QC K +  +SDL++H  VH+G R
Sbjct: 592 CG--KSFSQSSSLIQHQRGHTGERPYECSQCGKPFTHKSDLIQHQRVHTGER 641

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A2T7F4|ZSC12_PONPY Zinc finger and SCAN domain-containing protein 12 OS=Pongo pygmaeus GN=ZSCAN12 PE=3 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y+CN C K FS K  L  H+ IHK  + YQC +C K FS R  LTQHQ  +H G + ++C
Sbjct: 358 YHCNDCGKAFSQKAGLFHHIKIHKRDKPYQCTQCNKSFSRRSILTQHQ-GVHTGAKPYEC 416

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A+     L++H  + H    + C EC K+F S+  L  H  +IH     Y+C  C
Sbjct: 417 NECGKAFVYNSSLVSHQEIHHKEKCYQCKECGKSF-SQSGLIQH-QRIHTGEKPYKCEVC 474

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
              K ++ +  L  H ++H   + Y C +C K + Q S L EH  +H+G R
Sbjct: 475 E--KAFIQRTSLTEHQRIHTGERPYKCDKCGKAFTQRSVLTEHQRIHTGER 523

May be involved in transcriptional regulation.

Pongo pygmaeus (taxid: 9600)

>sp|Q9H7R5|ZN665_HUMAN Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CN C K FS   +L  H  IH G + Y+C +C K F    YL  HQ  IH G + ++C
Sbjct: 449 YKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQR-IHTGEKPYKC 507

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A+ +  +L  H ++      + C+EC K F     L NH  +IH     Y+CNEC
Sbjct: 508 NECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNEC 566

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
              K +  +  L  HM +H   K Y C QC K + Q S+L +H  +HSG
Sbjct: 567 G--KAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHSG 613

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q29RZ4|ZNF2_BOVIN Zinc finger protein 2 OS=Bos taurus GN=ZNF2 PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 5/168 (2%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CNAC K F  + +L  H  IH G + ++C EC K F  R  LT+HQ  IH G   ++C
Sbjct: 229 YECNACGKAFFDRSSLTVHQRIHTGEKPFKCSECGKAFFDRSSLTRHQR-IHTGESPYEC 287

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
           N+C +A+  K  L  H ++      + C+EC K F    SL  H         YQC+EC 
Sbjct: 288 NQCGKAFSQKSILTRHQLIHTGRKPYECNECGKAFYGVSSLNRHQKAHAGEPRYQCSEC- 346

Query: 121 TSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             K +  +  L +H K+H   K Y C++C K + Q   L  H  VH+G
Sbjct: 347 -GKAFFDRSSLTQHQKIHTGDKPYECSECGKAFSQRCRLTRHQRVHTG 393

May be involved in transcriptional regulation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
256085594	357	zinc finger protein [Schistosoma mansoni	0.638	0.470	0.366	4e-25
353233176	486	putative zinc finger protein [Schistosom	0.692	0.374	0.342	3e-23
256085592	486	zinc finger protein [Schistosoma mansoni	0.692	0.374	0.342	5e-23
395514016	571	PREDICTED: zinc finger protein 79-like [	0.615	0.283	0.360	2e-22
344269595	834	PREDICTED: zinc finger protein 160-like	0.619	0.195	0.375	2e-22
334350391	495	PREDICTED: zinc finger protein 3 homolog	0.623	0.331	0.374	2e-22
395546223	465	PREDICTED: zinc finger protein 3 homolog	0.623	0.352	0.374	2e-22
281338871	1634	hypothetical protein PANDA_014165 [Ailur	0.619	0.099	0.386	3e-22
432092616	610	Zinc finger protein 300 [Myotis davidii]	0.623	0.268	0.380	3e-22
338710406	873	PREDICTED: zinc finger protein 850-like	0.623	0.187	0.397	7e-22

>gi|256085594|ref|XP_002579002.1| zinc finger protein [Schistosoma mansoni] gi|353233177|emb|CCD80532.1| putative zinc finger protein [Schistosoma mansoni]

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 1   MRYYCNACSKNFSAKDTLNKHM-DIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQ 59
           ++Y C  C K F+ K  LNKH+  IH+ ++Y C++C  +F+++ YL +H   IH G ++ 
Sbjct: 156 IKYSCVQCYKTFTTKSHLNKHVKSIHEKLKYACDQCSAEFTSKFYLIEHMKVIHEGKKYP 215

Query: 60  CNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNEC 119
           C +C + +  K +L  H  + H GIR  C+ C K FA + +L  H   IH+ + Y CN C
Sbjct: 216 CYQCDKNFSSKCNLNIHVKVIHQGIRFICNVCNKQFAFKGNLDRHHKNIHEGIRYACNRC 275

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSGVR 170
              + + TK DL  H+K+   G  Y C QC++ +  +++L EH+ +VH+GVR
Sbjct: 276 --DRKFTTKYDLIGHIKVIHEGTEYRCDQCNRKFTSKANLNEHLRSVHTGVR 325

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|353233176|emb|CCD80531.1| putative zinc finger protein [Schistosoma mansoni]

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 1   MRYYCNACSKNFSAKDTLNKHMD-IHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQ 59
           ++Y C  C + F+ K  L +H   IH+G+   C++C ++F+T+  L +H  + H GI++ 
Sbjct: 148 IKYPCIQCDRKFTTKFHLIEHKKVIHQGINLSCDKCDRNFTTKSQLNRHIKSAHEGIKYP 207

Query: 60  CNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNEC 119
           CN+C +    K DL  H  + H GI+HPC++C + F ++  L +HI   H+ V + C+EC
Sbjct: 208 CNQCNKKLSTKYDLYVHKKVIHEGIKHPCNQCDRKFGTKSKLNDHIKVAHEGVTFPCDEC 267

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSGVRKLTTGPIK 178
              K + +   L RH++    G +Y C QC + Y     L EH+ A H GV K T     
Sbjct: 268 G--KIFSSNSALCRHLQSVHQGIKYPCNQCDRLYTSRFHLNEHLRANHEGV-KFTCDLCN 324

Query: 179 TEQTFGV 185
            E  F V
Sbjct: 325 KEFAFKV 331

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|256085592|ref|XP_002579001.1| zinc finger protein [Schistosoma mansoni]

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 1   MRYYCNACSKNFSAKDTLNKHMD-IHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQ 59
           ++Y C  C + F+ K  L +H   IH+G+   C++C ++F+T+  L +H  + H GI++ 
Sbjct: 148 IKYPCIQCDRKFTTKFHLIEHKKVIHQGINLSCDKCDRNFTTKSQLNRHIKSAHEGIKYP 207

Query: 60  CNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNEC 119
           CN+C +    K DL  H  + H GI+HPC++C + F ++  L +HI   H+ V + C+EC
Sbjct: 208 CNQCNKKLSTKYDLYVHKKVIHEGIKHPCNQCDRKFGTKSKLNDHIKVAHEGVTFPCDEC 267

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSGVRKLTTGPIK 178
              K + +   L RH++    G +Y C QC + Y     L EH+ A H GV K T     
Sbjct: 268 --GKIFSSNGALCRHLQSVHQGIKYPCNQCDRLYTSRFHLNEHLRANHEGV-KFTCDLCN 324

Query: 179 TEQTFGV 185
            E  F V
Sbjct: 325 KEFAFKV 331

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|395514016|ref|XP_003761217.1| PREDICTED: zinc finger protein 79-like [Sarcophilus harrisii]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C+ C K F  +  L +H  IH G + Y+C EC K F  RK LT+HQ  IH G + + C
Sbjct: 372 YECDGCGKTFRQRKGLTEHQKIHTGEKPYECNECGKTFRQRKGLTEHQK-IHTGEKPYVC 430

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A+  + D + H  +      + C+EC + F+ R  L  H  KIH  +  Y C EC
Sbjct: 431 NECGKAFSQRTDFIRHQRIHTGEKPYKCNECGRAFSQRKGLTEHN-KIHTGLRPYDCKEC 489

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
              + +  K DL RH ++H   K Y C +C K + Q + L++H  +H+G
Sbjct: 490 G--RAFGQKTDLIRHQRIHTGEKPYKCNECGKAFSQRTGLIDHQNIHTG 536

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344269595|ref|XP_003406635.1| PREDICTED: zinc finger protein 160-like [Loxodonta africana]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 5/168 (2%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CN C K F +   L KH  IH G + Y+C  C   F  R  LT+HQ  IH G + +QC
Sbjct: 553 YKCNECGKTFKSGSNLTKHQKIHTGEKPYKCNICGNVFGRRSGLTRHQ-KIHSGEKPYQC 611

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
            +CF+A+  + +L+ H ++      + C+EC K F  +  L  H    +    YQCNEC 
Sbjct: 612 IECFKAFSERSNLVQHQLIHSGEKPYRCNECEKAFIRKSDLLTHQQTHNGEKPYQCNEC- 670

Query: 121 TSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             K +  K DL +H ++H   K YHC +C K + Q S+L+ H  +HSG
Sbjct: 671 -DKAFTRKSDLVKHQRIHTGEKSYHCNECDKAFFQRSNLVAHQRIHSG 717

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334350391|ref|XP_003342344.1| PREDICTED: zinc finger protein 3 homolog [Monodelphis domestica]

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 7/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CNAC K F    T   H  IH G + Y+C+EC K FS    L +HQ  IH G + ++C
Sbjct: 302 YECNACGKAFRDISTFINHQKIHSGEKPYECDECGKAFSRSSSLIEHQR-IHSGEKPYEC 360

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A++   DL+ H  +      + C++C K F  R  L  H  +IH     ++CNEC
Sbjct: 361 NECGKAFRKSSDLILHQRIHSGEKPYECNQCGKAFRKRSDLIQH-HRIHSGEKPFKCNEC 419

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
              K + T+ DL +H+++H + K Y C +C K + Q SDL++H  +HSG +
Sbjct: 420 --EKAFRTRSDLVQHLRIHSDEKPYECNECGKAFRQNSDLIQHQRIHSGEK 468

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395546223|ref|XP_003774989.1| PREDICTED: zinc finger protein 3 homolog [Sarcophilus harrisii]

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 7/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y CNAC K F    T   H  IH G + Y+C+EC K FS    L +HQ  IH G + ++C
Sbjct: 272 YECNACGKAFRDISTFINHQKIHSGEKPYECDECGKAFSRSSSLIEHQR-IHSGEKPYEC 330

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
           N+C +A++   DL+ H  +      + C++C K F  R  L  H  +IH     ++CNEC
Sbjct: 331 NECGKAFRKSSDLILHQRIHSGEKPYECNQCGKAFRKRSDLIQH-HRIHSGEKPFKCNEC 389

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
              K + T+ DL +H+++H + K Y C +C K + Q SDL++H  +HSG +
Sbjct: 390 --EKAFRTRSDLVQHLRIHSDEKPYECNECGKAFRQNSDLIQHQRIHSGEK 438

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281338871|gb|EFB14455.1| hypothetical protein PANDA_014165 [Ailuropoda melanoleuca]

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 91/168 (54%), Gaps = 5/168 (2%)

Query: 3    YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
            Y C+ C K FS KDTL +H  IH G R Y+C EC K FS +  L QHQ  IH G R ++C
Sbjct: 905  YVCSKCGKAFSCKDTLVQHQIIHTGARPYECSECGKAFSRKDTLVQHQK-IHTGERPYEC 963

Query: 61   NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
             +C + +    +L+ H  +      + CSEC K F+   SL  H      A  Y C+EC 
Sbjct: 964  GECGKFFSHSSNLIVHQRIHTGAKPYECSECGKCFSHNSSLILHQRVHTGARPYVCSECG 1023

Query: 121  TSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
              K Y++   L +H K+H   + Y C++C KF+ + S L+ H  VH+G
Sbjct: 1024 --KAYISSSHLVQHKKVHTGARPYECSECGKFFSRNSSLILHQRVHTG 1069

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432092616|gb|ELK25154.1| Zinc finger protein 300 [Myotis davidii]

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y+C+ C K+F+ K  L  H  +H G R YQC EC K FS R YL  HQ  +H G R +QC
Sbjct: 300 YHCSECGKSFTQKSYLITHQRLHSGERPYQCSECGKSFSCRMYLKNHQ-LVHTGERLYQC 358

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVLYQCNEC 119
           + C +++  K +++ H  + H G R + CSEC K+F+ R  LKNH +      LYQC++C
Sbjct: 359 SHCGKSFSRKSNMVTHQRV-HTGERPYQCSECGKSFSCRFILKNHQIVHTGERLYQCSQC 417

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
             S  + +K ++ +H ++H  G+ Y C +C K +     L  H  +H G R
Sbjct: 418 GWS--FKSKSNMVKHQRVHTGGRPYQCRECGKCFAHSDTLSYHQRLHKGER 466

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338710406|ref|XP_001502610.3| PREDICTED: zinc finger protein 850-like [Equus caballus]

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C  C K F  K  L +H  IH GVR Y+C EC K FS +  L QHQ  IH G R ++C
Sbjct: 514 YECTDCGKAFGCKSKLVQHQRIHTGVRPYECIECGKSFSVKFVLIQHQR-IHSGERPYEC 572

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVLYQCNEC 119
           ++C +++  K  L+ H  + H G R + CSEC K+F+ +  L  H    +    Y+C EC
Sbjct: 573 SQCGKSFSQKSVLIQHQRI-HTGERPYDCSECWKSFSRKAQLIQHRTVHNGEQPYECGEC 631

Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
              K +  K  L RH ++H   K Y C QC + + Q+SDL++H  VH+G R
Sbjct: 632 --GKLFSRKTHLIRHWRVHTGAKPYECIQCGRSFSQKSDLIQHQRVHTGER 680

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
UNIPROTKB|I3LIM1	411	ZFP1 "Uncharacterized protein"	0.615	0.394	0.396	1.2e-28
UNIPROTKB|F1MTX5	415	ZFP1 "Uncharacterized protein"	0.615	0.390	0.396	1.2e-28
UNIPROTKB|J9NWH3	660	ZNF304 "Uncharacterized protei	0.612	0.243	0.394	1.4e-28
UNIPROTKB|J9NVG4	409	J9NVG4 "Uncharacterized protei	0.612	0.393	0.4	1.9e-28
MGI|MGI:99154	402	Zfp1 "zinc finger protein 1" [	0.615	0.402	0.390	1.9e-28
UNIPROTKB|F1MB05	465	F1MB05 "Uncharacterized protei	0.619	0.350	0.377	2e-28
UNIPROTKB|E2RSM6	405	ZFP1 "Uncharacterized protein"	0.615	0.4	0.390	2.4e-28
UNIPROTKB|E7ENV5	496	ZNF623 "Zinc finger protein 62	0.619	0.328	0.389	2.8e-28
UNIPROTKB|F1N691	253	ZNF184 "Zinc finger protein 18	0.612	0.636	0.385	3.9e-28
UNIPROTKB|J3KNQ1	374	ZFP1 "Zinc finger protein 1 ho	0.615	0.433	0.390	3.9e-28

UNIPROTKB|I3LIM1 ZFP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 67/169 (39%), Positives = 93/169 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             + CN C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct:   188 FICNYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 246

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
              +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct:   247 LECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNEC 305

Query:   120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G
Sbjct:   306 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTG 352

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MTX5 ZFP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 67/169 (39%), Positives = 93/169 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             + CN C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct:   195 FICNYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 253

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
              +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct:   254 LECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNEC 312

Query:   120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G
Sbjct:   313 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTG 359

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9NWH3 ZNF304 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 1.4e-28, P = 1.4e-28
 Identities = 67/170 (39%), Positives = 96/170 (56%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             Y C+ C K FS KDTL +H  IH G R Y+C EC K FS +  L QHQ  IH G R ++C
Sbjct:   448 YVCSKCGKAFSCKDTLVQHQIIHTGARPYECSECGKAFSRKDTLVQHQK-IHTGERPYEC 506

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNE 118
              +C + +    +L+ H  + H G + + CSEC K F+   SL  H  ++H     Y C+E
Sbjct:   507 GECGKFFSHSSNLIVHQRI-HTGAKPYECSECGKCFSHNSSLILH-QRVHTGARPYVCSE 564

Query:   119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             C   K Y++   L +H K+H   + Y C++C KF+ + S L+ H  VH+G
Sbjct:   565 CG--KAYISSSHLVQHKKVHTGARPYECSECGKFFSRNSSLILHQRVHTG 612

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9NVG4 J9NVG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 68/170 (40%), Positives = 93/170 (54%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             Y C+ C K FS K  L  H  +H G R Y C EC K FS    L QHQ  +H G + F C
Sbjct:   158 YECSECGKLFSHKSNLFIHQIVHTGERPYGCSECGKSFSRNADLIQHQR-VHTGEKPFTC 216

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNE 118
             ++C +A++    L+ H  + H G+R + CSEC K F+   SL  H  ++H     Y+C+E
Sbjct:   217 SECGKAFRHNSTLVQHHRI-HTGVRPYECSECGKFFSFNSSLMKH-QRVHTGERPYKCSE 274

Query:   119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             C   K Y  K  L  H ++H   + Y CT+C KF+ Q S LM+H  VH+G
Sbjct:   275 CG--KFYSHKSSLINHWRVHTGERPYECTECGKFFSQSSSLMQHRKVHTG 322

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:99154 Zfp1 "zinc finger protein 1" [Mus musculus (taxid:10090)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 66/169 (39%), Positives = 93/169 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             + CN C K FS K  L  H  IH G + Y+C+ C K FS +  L +HQ  IH G + F+C
Sbjct:   182 FVCNYCDKTFSFKSLLVSHKRIHTGEKPYECDVCQKTFSHKANLIKHQR-IHTGEKPFEC 240

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
              +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct:   241 PECGKAFTHQSNLIVHQRAHMEKKPYGCSECGKTFAQKFELTTH-QRIHTGERPYECNEC 299

Query:   120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             +  K +  K +L  H K+H   KRY C++C K +IQ S L+ H   H+G
Sbjct:   300 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTG 346

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MB05 F1MB05 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 65/172 (37%), Positives = 96/172 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             Y C+AC K F  K  L +H  +H G R Y+C EC K FS +  L QH+  +H G R F+C
Sbjct:   161 YKCSACGKTFCRKYRLAEHQRVHTGERPYECSECGKTFSYKHILVQHRR-VHTGERPFKC 219

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNE 118
              +C +A+  +  L  H  + H G + + CSEC K F+   SL  H  +IH     Y+CNE
Sbjct:   220 RECGKAFSNRPTLARHRRI-HTGEKPYECSECGKLFSQSSSLNEH-QRIHTGSRPYKCNE 277

Query:   119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
             C   K + +  +L +H ++H   K Y C++C KF+ Q   L++H  +H+G R
Sbjct:   278 CG--KFFTSNSNLVKHRRVHTGTKPYECSECGKFFNQSPSLIKHQRIHTGER 327

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RSM6 ZFP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 66/169 (39%), Positives = 93/169 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             + CN C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct:   182 FICNYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 240

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
              +C +A+  + +L+ H         + CS+C KTFA +  L  H  +IH     Y+CNEC
Sbjct:   241 IECGKAFTHQSNLIVHQRAHMEKKPYECSDCGKTFAQKFELTTH-QRIHTGERPYECNEC 299

Query:   120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G
Sbjct:   300 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTG 346

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E7ENV5 ZNF623 "Zinc finger protein 623" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 2.8e-28, P = 2.8e-28
 Identities = 67/172 (38%), Positives = 95/172 (55%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             Y CN C K+F    +L +H  IH  V+ Y+C+EC K F  R  L +HQ  IH G R F+C
Sbjct:   223 YECNECGKSFIRSSSLIRHYQIHTEVKQYECKECGKAFRHRSDLIEHQR-IHTGERPFEC 281

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAV-LYQCNE 118
             N+C +A+     L+ H  + H G R + C+EC K F+   +   H  +IH    LY+CNE
Sbjct:   282 NECGKAFIRSSKLIQHQRI-HTGERPYVCNECGKRFSQTSNFTQH-QRIHTGEKLYECNE 339

Query:   119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
             C   K +     L RH K+H   + Y C +C K ++Q++ L EH  +HSG R
Sbjct:   340 CG--KAFFLSSYLIRHQKIHTGERVYECKECGKAFLQKAHLTEHQKIHSGDR 389

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N691 ZNF184 "Zinc finger protein 184" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/171 (38%), Positives = 97/171 (56%)

Query:     3 YYCNACSKNFSAKDTL-NKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQ 59
             Y CN C K FS  + L N H  IH G + Y+C+EC K FS R +L QHQ  IH G + ++
Sbjct:    31 YKCNECEKAFSRSENLINHHQRIHTGEKPYKCDECGKAFSQRTHLVQHQR-IHTGEKPYE 89

Query:    60 CNKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH-KAVLYQCN 117
             CN+C +A+    +L  H    H G + + C+EC K F+   SL  H  +IH +   ++C+
Sbjct:    90 CNECGKAFSQHSNLTQHQKT-HTGEKPYKCNECGKAFSYCSSLTQH-RRIHTREKPFECS 147

Query:   118 ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             EC  +  YL+  +L +H K H   K Y C +C K +I+ S L +H  +H+G
Sbjct:   148 ECGKAFSYLS--NLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTG 196

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J3KNQ1 ZFP1 "Zinc finger protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/169 (39%), Positives = 92/169 (54%)

Query:     3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
             + C  C K FS K  L  H  IH G + Y+C  C K FS +  L +HQ  IH G + F+C
Sbjct:   151 FICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFEC 209

Query:    61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNEC 119
              +C +A+  + +L+ H         + CSEC KTFA +  L  H  +IH     Y+CNEC
Sbjct:   210 PECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNEC 268

Query:   120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             +  K +  K +L  H K+H   KRY C++C K +IQ S L+ HM  H+G
Sbjct:   269 A--KTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTG 315

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG2462|consensus	279		99.97
KOG2462|consensus	279		99.96
KOG1074|consensus	958		99.95
KOG3608|consensus	467		99.9
KOG3623|consensus	1007		99.9
KOG3608|consensus	467		99.88
KOG1074|consensus	958		99.88
KOG3623|consensus	1007		99.84
KOG3576|consensus	267		99.77
KOG3576|consensus	267		99.74
PLN03086	567	PRLI-interacting factor K; Provisional	99.44
PLN03086	567	PRLI-interacting factor K; Provisional	99.31
PHA00733	128	hypothetical protein	99.15
PHA00733	128	hypothetical protein	99.12
KOG3993|consensus	500		99.09
PHA02768	55	hypothetical protein; Provisional	99.08
PHA02768	55	hypothetical protein; Provisional	98.98
KOG3993|consensus	500		98.64
PHA00732	79	hypothetical protein	98.63
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.55
PHA00616	44	hypothetical protein	98.52
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.41
PHA00616	44	hypothetical protein	98.41
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.35
PHA00732	79	hypothetical protein	98.28
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.18
KOG2231|consensus	669		98.13
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.99
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.94
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.94
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.73
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.72
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.57
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.57
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.56
KOG1146|consensus	1406		97.56
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.54
smart00355	26	ZnF_C2H2 zinc finger.	97.36
KOG2231|consensus	669		97.19
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.14
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.07
KOG1146|consensus	1406		97.06
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.04
smart00355	26	ZnF_C2H2 zinc finger.	96.97
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.95
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.93
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.78
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.7
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.53
KOG2785|consensus	390		96.45
PRK04860	160	hypothetical protein; Provisional	96.31
KOG2785|consensus	390		96.15
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.1
PRK04860	160	hypothetical protein; Provisional	95.94
COG5048	467	FOG: Zn-finger [General function prediction only]	95.53
KOG2482|consensus	423		95.46
KOG2893|consensus	341		95.43
KOG2482|consensus	423		95.33
KOG4173|consensus	253		95.13
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.97
COG5048	467	FOG: Zn-finger [General function prediction only]	94.78
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.21
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.2
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.19
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.07
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	94.04
KOG2893|consensus	341		94.01
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	93.22
KOG2186|consensus	276		92.78
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.73
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.59
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.07
COG4049	65	Uncharacterized protein containing archaeal-type C	91.92
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	91.69
KOG4173|consensus	253		91.54
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	90.51
COG4049	65	Uncharacterized protein containing archaeal-type C	90.07
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.6
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	87.74
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	87.71
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	86.26
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	85.73
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.15
smart00531	147	TFIIE Transcription initiation factor IIE.	85.14
COG1592	166	Rubrerythrin [Energy production and conversion]	83.19
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	82.52
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.14
PF15269	54	zf-C2H2_7: Zinc-finger	82.11
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.0
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	81.95
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	81.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.35
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	81.24

>KOG2462|consensus

Probab=99.97  E-value=5e-31  Score=202.11  Aligned_cols=134  Identities=28%  Similarity=0.554  Sum_probs=99.3

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCC---CceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRG---IRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHI  105 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  105 (263)
                      .|+|..||+.|.+..+|-+|..+|...   +.+.|..|++.|.+...|..|++.|.  .+.+|.+||+.|.+.+.|+.|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence            567777777777777777777665432   23666666666666666666665555  4577888888888888888888


Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhc
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      |.|+|||||.|+.|+  ++|...++|+.|+.+|.+.|+|.|..|++.|++.+-|.+|...-
T Consensus       208 RTHTGEKPF~C~hC~--kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  208 RTHTGEKPFSCPHCG--KAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             ccccCCCCccCCccc--chhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            888888888888888  88888888888888888888888888888888888888886543

>KOG2462|consensus

Probab=99.96  E-value=5.1e-30  Score=196.58  Aligned_cols=133  Identities=25%  Similarity=0.443  Sum_probs=127.1

Q ss_pred             ceecccccccccchHHHHHHHHHhcCC---CcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHH
Q psy11318         57 RFQCNKCFRAYKLKKDLLAHTMLEHFG---IRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRR  133 (263)
Q Consensus        57 ~~~C~~C~~~f~~~~~l~~H~~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~  133 (263)
                      .|+|+.|++.+.+..+|.+|.+.|..-   +-+.|++|++.+.+...|.+|++.|.  -+.+|.+||  +.|...+.|+.
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCG--KaFSRPWLLQG  205 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICG--KAFSRPWLLQG  205 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccccccc--ccccchHHhhc
Confidence            499999999999999999999988764   67999999999999999999999987  578999999  99999999999


Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeeeccCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~~~  193 (263)
                      |+++|+|||||.|+.|++.|+++++|+.||++|.+.+.|.|..|++.|...+-|-+|...
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999875

>KOG1074|consensus

Probab=99.95  E-value=1.2e-29  Score=218.91  Aligned_cols=142  Identities=23%  Similarity=0.379  Sum_probs=125.6

Q ss_pred             eecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCC----ccccCC---CCCCCcccCCHHH
Q psy11318         58 FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKA----VLYQCN---ECSTSKDYLTKRD  130 (263)
Q Consensus        58 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~----~~~~C~---~C~~~~~f~~~~~  130 (263)
                      -.|=+|.+...-...|+.|.+.|.+++||+|.+|++.|.++.+|+.||..|...    ..+.|+   +|.  +.|...-.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~--~kftn~V~  683 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQ--KKFTNAVT  683 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhc--cccccccc
Confidence            358899999999999999999999999999999999999999999999887643    347788   888  88888888


Q ss_pred             HHHHHHHhCCCC--------------------------------------------------------------------
Q psy11318        131 LRRHMKLHFNGK--------------------------------------------------------------------  142 (263)
Q Consensus       131 l~~H~~~h~~~~--------------------------------------------------------------------  142 (263)
                      |..|+++|.+..                                                                    
T Consensus       684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~  763 (958)
T KOG1074|consen  684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC  763 (958)
T ss_pred             ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence            888888886321                                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy11318        143 --------------------------------------------------------------------------------  142 (263)
Q Consensus       143 --------------------------------------------------------------------------------  142 (263)
                                                                                                      
T Consensus       764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t  843 (958)
T KOG1074|consen  764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT  843 (958)
T ss_pred             ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------CccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCccccccccee
Q psy11318        143 -----------------------------------RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRE  187 (263)
Q Consensus       143 -----------------------------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l  187 (263)
                                                         ...|.+|++.|...+.|.+|+++|+++|+|.|..|++.|..+.+|
T Consensus       844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnL  923 (958)
T KOG1074|consen  844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNL  923 (958)
T ss_pred             ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhh
Confidence                                               378999999999999999999999999999999999999999999


Q ss_pred             eeccCCCcccccCC
Q psy11318        188 LRHVGFPMKTDHWS  201 (263)
Q Consensus       188 ~~H~~~~~~~~~~~  201 (263)
                      ..||.+|+.....+
T Consensus       924 KvHMgtH~w~q~~s  937 (958)
T KOG1074|consen  924 KVHMGTHMWVQPPS  937 (958)
T ss_pred             hhhhccccccCCCc
Confidence            99999999755443

>KOG3608|consensus

Probab=99.90  E-value=5.3e-24  Score=167.93  Aligned_cols=183  Identities=25%  Similarity=0.408  Sum_probs=164.2

Q ss_pred             cccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHh--cCCCceecccccccccchHHHHHHHHHhcC
Q psy11318          6 NACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAI--HRGIRFQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus         6 ~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~--~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      .-|-+.|.+++.|++|+++|+++ ...|+.||.-|.++..|..|++..  ....+|.|..|.+.|.+...|..|+..|-.
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn  262 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN  262 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            46888999999999999999995 789999999999999999998753  344579999999999999999999977764


Q ss_pred             CCcccCCcCCCcCCCHHHHHHHHHHhc-CCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCc--chhhhcChHHH
Q psy11318         83 GIRHPCSECPKTFASRHSLKNHILKIH-KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDL  159 (263)
Q Consensus        83 ~~~~~C~~C~~~f~~~~~l~~H~~~~~-~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l  159 (263)
                        -|+|+.|+.+....+.|..|++..| ..+||+|..|.  ..|.+.++|.+|+..|. +-.|.|..  |.+.|....++
T Consensus       263 --~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd--~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~  337 (467)
T KOG3608|consen  263 --CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECD--TRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQM  337 (467)
T ss_pred             --cccccccccCCCChHHHHHHHHhhhccCCCccccchh--hhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHH
Confidence              3899999999999999999998766 67999999999  99999999999999887 66799988  99999999999


Q ss_pred             HHHHhhcc-CCCC--CcCCCCcccccccceeeeccCC
Q psy11318        160 MEHMAVHS-GVRK--LTTGPIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       160 ~~H~~~h~-~~~~--~~c~~c~~~~~~~~~l~~H~~~  193 (263)
                      ++|++.++ |..|  |.|..|++-|++..+|..|+..
T Consensus       338 ~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~k  374 (467)
T KOG3608|consen  338 RRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMK  374 (467)
T ss_pred             HHHHHHhccCCCCCceeeecchhhhccchhHHHHHHH
Confidence            99998766 5554  9999999999999999999765

>KOG3623|consensus

Probab=99.90  E-value=9.1e-25  Score=186.33  Aligned_cols=78  Identities=24%  Similarity=0.505  Sum_probs=75.8

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeeeccCC
Q psy11318        114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       114 ~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~~~  193 (263)
                      |.|..|.  +.|.-.+.|.+|.-.|+|.+||.|..|.+.|..+..|..|+|.|.|++||.|..|++.|+...++-.||.-
T Consensus       895 yaCDqCD--K~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  895 YACDQCD--KAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMNH  972 (1007)
T ss_pred             chHHHHH--HHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhcc
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999973

>KOG3608|consensus

Probab=99.88  E-value=5.7e-23  Score=162.15  Aligned_cols=185  Identities=22%  Similarity=0.379  Sum_probs=167.8

Q ss_pred             cccccccCChHHHHHHHHhhCCc----------------ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccc
Q psy11318          6 NACSKNFSAKDTLNKHMDIHKGV----------------RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKL   69 (263)
Q Consensus         6 ~~C~~~f~~~~~L~~H~~~h~~~----------------~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~   69 (263)
                      ..|+..|.+...|..|+..|..-                +..+..|-+.+.++..|++|+++|.+++...|+.|+..|.+
T Consensus       140 edCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~  219 (467)
T KOG3608|consen  140 EDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRT  219 (467)
T ss_pred             hhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhcc
Confidence            68999999999999999887331                35567799999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCC--CcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHH-hCCCCCccC
Q psy11318         70 KKDLLAHTMLEHFG--IRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKL-HFNGKRYHC  146 (263)
Q Consensus        70 ~~~l~~H~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~-h~~~~~~~C  146 (263)
                      ...|-.|++....-  .+|.|..|.+.|.+...|..|+..|-.  -|+|+.|.  -+....+.|..|++. |...+||+|
T Consensus       220 ~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCd--mtc~~~ssL~~H~r~rHs~dkpfKC  295 (467)
T KOG3608|consen  220 KTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCD--MTCSSASSLTTHIRYRHSKDKPFKC  295 (467)
T ss_pred             ccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccc--cCCCChHHHHHHHHhhhccCCCccc
Confidence            99999999776643  689999999999999999999998854  68999999  889999999999986 778899999


Q ss_pred             CcchhhhcChHHHHHHHhhccCCCCCcCCC--CcccccccceeeeccCCCc
Q psy11318        147 TQCSKFYIQESDLMEHMAVHSGVRKLTTGP--IKTEQTFGVRELRHVGFPM  195 (263)
Q Consensus       147 ~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~  195 (263)
                      ..|++.|.+.++|.+|..+|. +-.|.|..  |.+++.+...+++|++.+.
T Consensus       296 d~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  296 DECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             cchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887 77899988  9999999999999998655

>KOG1074|consensus

Probab=99.88  E-value=1.6e-23  Score=181.50  Aligned_cols=170  Identities=25%  Similarity=0.492  Sum_probs=149.2

Q ss_pred             CccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHhcCCCc----eecc---cccccccchHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRGIR----FQCN---KCFRAYKLKKDL   73 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~~~----~~C~---~C~~~f~~~~~l   73 (263)
                      +.+|.+|.++...+..|+.|+++|+|+ ||+|++||++|.++++|+.||-.|...-+    |.|+   +|-+.|...-.|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence            568999999999999999999999995 99999999999999999999998554433    8999   999999999999


Q ss_pred             HHHHHHhcCCC-------------cccCCcCCCcCCCHHHHHHHHHHhcCCcc---------------------------
Q psy11318         74 LAHTMLEHFGI-------------RHPCSECPKTFASRHSLKNHILKIHKAVL---------------------------  113 (263)
Q Consensus        74 ~~H~~~~~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~~~~~~~---------------------------  113 (263)
                      ..|+++|.++.             .-.|..|.+.|.....+..++..+.+...                           
T Consensus       685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~  764 (958)
T KOG1074|consen  685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCG  764 (958)
T ss_pred             cceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCccccccc
Confidence            99999887441             14688999999888777777776632100                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy11318        114 --------------------------------------------------------------------------------  113 (263)
Q Consensus       114 --------------------------------------------------------------------------------  113 (263)
                                                                                                      
T Consensus       765 ~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~  844 (958)
T KOG1074|consen  765 RELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATK  844 (958)
T ss_pred             cccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------ccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHH
Q psy11318        114 -----------------------------------YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESD  158 (263)
Q Consensus       114 -----------------------------------~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  158 (263)
                                                         ..|.+|+  +.|.+.+.|..|+++|+++++|.|.+|++.|.++.+
T Consensus       845 ~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCg--k~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgn  922 (958)
T KOG1074|consen  845 TNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCG--KQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGN  922 (958)
T ss_pred             cccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccch--hcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhh
Confidence                                               6799999  999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCc
Q psy11318        159 LMEHMAVHSGVRKLT  173 (263)
Q Consensus       159 l~~H~~~h~~~~~~~  173 (263)
                      |+.||.+|.+..++.
T Consensus       923 LKvHMgtH~w~q~~s  937 (958)
T KOG1074|consen  923 LKVHMGTHMWVQPPS  937 (958)
T ss_pred             hhhhhccccccCCCc
Confidence            999999999887754

>KOG3623|consensus

Probab=99.84  E-value=8.2e-22  Score=168.46  Aligned_cols=77  Identities=30%  Similarity=0.610  Sum_probs=74.6

Q ss_pred             ccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHh
Q psy11318         86 HPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA  164 (263)
Q Consensus        86 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (263)
                      |.|..|++.|...+.|.+|.-.|.|.+||+|.+|.  +.|..+..|..|.+.|.|+|||.|..|++.|....++..||.
T Consensus       895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCk--KAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICK--KAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             chHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhh--HhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            45999999999999999999999999999999999  999999999999999999999999999999999999999984

>KOG3576|consensus

Probab=99.77  E-value=1.5e-19  Score=132.48  Aligned_cols=108  Identities=25%  Similarity=0.431  Sum_probs=80.4

Q ss_pred             CccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHh
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLE   80 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~   80 (263)
                      .+.|.+|+|.|+..-.|++|+..|..+ .|.|..||+.|++...|++|+++|++.+||+|..|++.|...-.|..|++..
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv  196 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV  196 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence            367888888888888888888888774 7888888888888888888888888888888888888888888888888776


Q ss_pred             cCC-----------CcccCCcCCCcCCCHHHHHHHHHHhc
Q psy11318         81 HFG-----------IRHPCSECPKTFASRHSLKNHILKIH  109 (263)
Q Consensus        81 ~~~-----------~~~~C~~C~~~f~~~~~l~~H~~~~~  109 (263)
                      |+.           +.|.|+.||.+-.....+..|++.++
T Consensus       197 hgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  197 HGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             cCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            654           33445555555555555555555444

>KOG3576|consensus

Probab=99.74  E-value=2.9e-19  Score=131.00  Aligned_cols=111  Identities=22%  Similarity=0.350  Sum_probs=100.2

Q ss_pred             CcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHH
Q psy11318         84 IRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM  163 (263)
Q Consensus        84 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  163 (263)
                      ..|.|.+|++.|.....|.+|++-|...+.+.|..||  ++|...-+|++|.++|+|.+||+|..|++.|+.+-+|..|+
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cg--kgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCG--KGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhcc--CcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            3478999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             hhccCC-----------CCCcCCCCcccccccceeeeccCCCcc
Q psy11318        164 AVHSGV-----------RKLTTGPIKTEQTFGVRELRHVGFPMK  196 (263)
Q Consensus       164 ~~h~~~-----------~~~~c~~c~~~~~~~~~l~~H~~~~~~  196 (263)
                      +.-+|.           +-|+|+.||+.....+.+..|++.+..
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            877664           568999999999999999999887553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.44  E-value=3.4e-13  Score=116.44  Aligned_cols=96  Identities=18%  Similarity=0.423  Sum_probs=44.6

Q ss_pred             ecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccC----------CH
Q psy11318         59 QCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYL----------TK  128 (263)
Q Consensus        59 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~----------~~  128 (263)
                      .|+.|++.|. ...|..|++.+|  .++.|+ |++.+ ....|..|+..|.+.+++.|..|+  ..+.          ..
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~--~~v~~g~~~~d~~d~~  527 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCG--DMVQAGGSAMDVRDRL  527 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCC--CccccCccccchhhhh
Confidence            4555555553 344555554443  445555 55433 334555555555555555555555  4342          12


Q ss_pred             HHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHH
Q psy11318        129 RDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM  163 (263)
Q Consensus       129 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  163 (263)
                      +.|..|.... |.+++.|..||+.+..+ .+..|+
T Consensus       528 s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~  560 (567)
T PLN03086        528 RGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQ  560 (567)
T ss_pred             hhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHH
Confidence            3444554443 44555555555444433 234443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.31  E-value=4.9e-12  Score=109.39  Aligned_cols=143  Identities=16%  Similarity=0.335  Sum_probs=111.3

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNK--CFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHIL  106 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  106 (263)
                      .-.|+.|..... ...|..|... .......|+.  |+..|.. ..+..|         +.|+.|++.|. ...|..|+.
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~~-C~r~~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~  473 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEAY-CSRHNVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMK  473 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHhh-CCCcceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHH
Confidence            357888877654 4456688865 5555678984  9998843 334444         59999999996 678999999


Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhc----------ChHHHHHHHhhccCCCCCcCCC
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYI----------QESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      .+|  +++.|+ |+  ..+ ....|..|+.+|.+.+++.|.+|++.|.          ....|..|.... +.+++.|..
T Consensus       474 ~~H--kpv~Cp-Cg--~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        474 VFH--EPLQCP-CG--VVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             hcC--CCccCC-CC--CCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            986  789999 98  655 6689999999999999999999999985          245899999885 999999999


Q ss_pred             CcccccccceeeeccC
Q psy11318        177 IKTEQTFGVRELRHVG  192 (263)
Q Consensus       177 c~~~~~~~~~l~~H~~  192 (263)
                      |++.+..+ .|..|+.
T Consensus       547 Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        547 CGRSVMLK-EMDIHQI  561 (567)
T ss_pred             cCCeeeeh-hHHHHHH
Confidence            99877544 3444543

>PHA00733 hypothetical protein

Probab=99.15  E-value=3.7e-11  Score=85.23  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=65.3

Q ss_pred             CcccccCCCccccCChhHHHHH--H---HHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHH
Q psy11318         27 GVRYQCEECPKDFSTRKYLTQH--Q---NAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSL  101 (263)
Q Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H--~---~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l  101 (263)
                      ..++.|.+|+..|.+...|..|  +   ..++++.+|.|..|++.|.+...|..|++.+  ..+|.|+.|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            3478888888887777666655  1   1335577899999999999999999998754  3568999999999999999


Q ss_pred             HHHHHHhcC
Q psy11318        102 KNHILKIHK  110 (263)
Q Consensus       102 ~~H~~~~~~  110 (263)
                      ..|+...|+
T Consensus       116 ~~H~~~~h~  124 (128)
T PHA00733        116 LDHVCKKHN  124 (128)
T ss_pred             HHHHHHhcC
Confidence            999988876

>PHA00733 hypothetical protein

Probab=99.12  E-value=6.5e-11  Score=84.02  Aligned_cols=81  Identities=14%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             CcccCCcCCCcCCCHHHHHHH--HH---HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHH
Q psy11318         84 IRHPCSECPKTFASRHSLKNH--IL---KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESD  158 (263)
Q Consensus        84 ~~~~C~~C~~~f~~~~~l~~H--~~---~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  158 (263)
                      +++.|.+|.+.|.....|..+  ++   .+++.++|.|+.|+  +.|.+...|..|++.+  +.+|.|..|++.|.....
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cg--k~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCL--MPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCC--CcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            455565555555554444443  11   22346677777777  7777777777777765  345778888888888888


Q ss_pred             HHHHHhhccC
Q psy11318        159 LMEHMAVHSG  168 (263)
Q Consensus       159 l~~H~~~h~~  168 (263)
                      |.+|+...|+
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            8887776665

>KOG3993|consensus

Probab=99.09  E-value=1.1e-11  Score=100.91  Aligned_cols=188  Identities=14%  Similarity=0.102  Sum_probs=110.3

Q ss_pred             ccccccccccCChHHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCcee---cccccccccchHHHHHHHH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQ---CNKCFRAYKLKKDLLAHTM   78 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~---C~~C~~~f~~~~~l~~H~~   78 (263)
                      |.|-+|...|.+...|.+|.=.... +.|+|+.|+|+|+.-.+|-.|.+.|.....-.   -+.=.+. .....+.....
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~-~~~rae~~ea~  346 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQA-VETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhh-hhhhhhhhhcc
Confidence            7899999999999999999644333 37999999999999999999998865332110   0000000 00011111110


Q ss_pred             H---hcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCc-----------------cccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318         79 L---EHFGIRHPCSECPKTFASRHSLKNHILKIHKAV-----------------LYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus        79 ~---~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~-----------------~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      .   ...+-.|.|.+|++.|.+...|+.|+..|+...                 .+-|..+.  -.+...+.--.+...+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a--~h~~a~~~~g~~vl~~  424 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVA--THSSASDSHGDEVLYV  424 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccc--cccccccccccceeee
Confidence            0   011235777777777777777777766665211                 02233333  1121111111111111


Q ss_pred             CC-CCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeeeccCC
Q psy11318        139 FN-GKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       139 ~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~~~  193 (263)
                      .+ .....|++|+..+..+..-..+.+.-.....|.|..|.-.|.+...|.+|+..
T Consensus       425 a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  425 AGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             eccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence            11 11245677777777666656666666667778888888888888888888775

>PHA02768 hypothetical protein; Provisional

Probab=99.08  E-value=4.4e-11  Score=69.98  Aligned_cols=43  Identities=14%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             ccccccccccCChHHHHHHHHhhCCcccccCCCccccCChhHHH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLT   46 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~   46 (263)
                      |.|++||+.|.....|..|+++|+ .+|+|..|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            678888888888888888888877 4778888888777666554

>PHA02768 hypothetical protein; Provisional

Probab=98.98  E-value=4.4e-10  Score=65.82  Aligned_cols=45  Identities=20%  Similarity=0.432  Sum_probs=39.8

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeee
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELR  189 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~  189 (263)
                      .|.|+.||+.|++.+.|.+|+++|+  ++++|..|++.|+..++|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence            4889999999999999999999988  78999999999998887764

>KOG3993|consensus

Probab=98.64  E-value=3.2e-09  Score=86.89  Aligned_cols=52  Identities=19%  Similarity=0.503  Sum_probs=31.4

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEH   81 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   81 (263)
                      |.|..|...|.+.+.|-+|.-.---.++|+|++|+|.|+--.||..|.+-|.
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence            6666666666666666666533222234666666666666666666665443

>PHA00732 hypothetical protein

Probab=98.63  E-value=2.4e-08  Score=64.26  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             CccccccccccCChHHHHHHHHh-hCCcccccCCCccccCChhHHHHHHHHhcCC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDI-HKGVRYQCEECPKDFSTRKYLTQHQNAIHRG   55 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~-h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   55 (263)
                      +|.|.+||+.|.+...|..|++. |.+  +.|+.|++.|.   .|..|++++.+-
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~--~~C~~CgKsF~---~l~~H~~~~~~~   50 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL--TKCPVCNKSYR---RLNQHFYSQYDI   50 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC--CccCCCCCEeC---ChhhhhcccCCc
Confidence            58899999999999999999874 553  68899998887   588888775543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.55  E-value=3.4e-08  Score=49.42  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=9.7

Q ss_pred             HHHHHhhccCCCCCcCCCCcccc
Q psy11318        159 LMEHMAVHSGVRKLTTGPIKTEQ  181 (263)
Q Consensus       159 l~~H~~~h~~~~~~~c~~c~~~~  181 (263)
                      |.+|+++|+++++|.|+.|++.|
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEE
T ss_pred             HHHHhhhcCCCCCCCCCCCcCee
Confidence            33444444444444444444443

...

>PHA00616 hypothetical protein

Probab=98.52  E-value=6.3e-08  Score=53.97  Aligned_cols=33  Identities=24%  Similarity=0.572  Sum_probs=27.4

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      +|.|+.||+.|...++|.+|++.|++.+++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            578888888888888888888888888887765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.52  E-value=5.2e-08  Score=48.75  Aligned_cols=26  Identities=42%  Similarity=0.866  Sum_probs=23.9

Q ss_pred             HHHHHHHHhCCCCCccCCcchhhhcC
Q psy11318        130 DLRRHMKLHFNGKRYHCTQCSKFYIQ  155 (263)
Q Consensus       130 ~l~~H~~~h~~~~~~~C~~C~~~f~~  155 (263)
                      +|.+|+++|+|+++|.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999964

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.41  E-value=4.6e-07  Score=54.19  Aligned_cols=48  Identities=23%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             ccccccccccCChHHHHHHHHhhCC---cccccCCCccccCChhHHHHHHHHhc
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG---VRYQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~---~~~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      |.||+|++ ..+...|..|....+.   ..+.|++|...+.  .+|..|++..|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            55555555 3344555555444332   1455555554332  25555555443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.41  E-value=1.2e-07  Score=52.78  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=17.0

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceeccc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNK   62 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   62 (263)
                      |+|+.||+.|...++|.+|++.+|++.++.|..
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            455555555555555555555555555544443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.35  E-value=9.2e-07  Score=52.90  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=31.3

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCC--CceecccccccccchHHHHHHHHHhc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRG--IRFQCNKCFRAYKLKKDLLAHTMLEH   81 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~~~   81 (263)
                      .|.|++|++ ..+...|..|....|..  ..+.|++|...+.  .+|..|+..+|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            367777777 45566777777765553  2366777766433  36666665554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.28  E-value=4.7e-07  Score=58.33  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT   77 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   77 (263)
                      ||.|..|++.|.+...|+.|++.+|.  ++.|+.|++.|.   .+..|+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhh
Confidence            57788888888888888888874333  257888888776   366676

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.18  E-value=1.1e-06  Score=42.58  Aligned_cols=22  Identities=45%  Similarity=0.925  Sum_probs=13.3

Q ss_pred             ccccccccccCChHHHHHHHHh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDI   24 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~   24 (263)
                      |.|+.|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG2231|consensus

Probab=98.13  E-value=4.5e-05  Score=67.67  Aligned_cols=134  Identities=22%  Similarity=0.422  Sum_probs=85.6

Q ss_pred             ccCCCccccCChhHHHHHHHHhcCCCceeccccc---------ccccchHHHHHHHHHhcC-C---C-cccCCcCCCcCC
Q psy11318         31 QCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCF---------RAYKLKKDLLAHTMLEHF-G---I-RHPCSECPKTFA   96 (263)
Q Consensus        31 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~---------~~f~~~~~l~~H~~~~~~-~---~-~~~C~~C~~~f~   96 (263)
                      .|.+| -.|.....|+.|+...|+.  +.|.+|-         ....+...|..|++.--. +   + --.|..|...|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl  193 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL  193 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence            45555 5566888899999766653  5555543         233456778888764333 2   1 146899999999


Q ss_pred             CHHHHHHHHHHhcCCccccCCCCC----CCcccCCHHHHHHHHHHhCCCCCccCC--cch-hhhcCh----HHHHHHHhh
Q psy11318         97 SRHSLKNHILKIHKAVLYQCNECS----TSKDYLTKRDLRRHMKLHFNGKRYHCT--QCS-KFYIQE----SDLMEHMAV  165 (263)
Q Consensus        97 ~~~~l~~H~~~~~~~~~~~C~~C~----~~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~-~~f~~~----~~l~~H~~~  165 (263)
                      ....|..|++..|-    .|-.|.    ...-|....+|..|.+.+|    |.|.  .|. +.|...    ..|++|.+.
T Consensus       194 d~~el~rH~~~~h~----~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk~~~~~  265 (669)
T KOG2231|consen  194 DDDELYRHLRFDHE----FCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELKAHNRF  265 (669)
T ss_pred             cHHHHHHhhcccee----heeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHHhhccc
Confidence            99999999998774    455552    2367888889999998766    6676  453 334444    344444433


Q ss_pred             ccCCCCCcCC
Q psy11318        166 HSGVRKLTTG  175 (263)
Q Consensus       166 h~~~~~~~c~  175 (263)
                      +.-++.|.|.
T Consensus       266 ~~~e~~~~~~  275 (669)
T KOG2231|consen  266 IQHEKCYICR  275 (669)
T ss_pred             cchheeccCC
Confidence            3334445553

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.99  E-value=4.9e-06  Score=40.28  Aligned_cols=22  Identities=36%  Similarity=0.812  Sum_probs=15.7

Q ss_pred             cccCCCccccCChhHHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      |.|++|++.|.+...|+.|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.94  E-value=7e-06  Score=40.05  Aligned_cols=23  Identities=39%  Similarity=0.896  Sum_probs=10.8

Q ss_pred             ccccccccccCChHHHHHHHHhh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      |.|++|++.|.+...|+.|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555443

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.94  E-value=6.5e-06  Score=56.09  Aligned_cols=23  Identities=39%  Similarity=0.762  Sum_probs=0.0

Q ss_pred             ccccccccCChHHHHHHHHhhCC
Q psy11318          5 CNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         5 C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |..|+..|.+...|..||...++
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~   24 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHG   24 (100)
T ss_dssp             -----------------------
T ss_pred             ccccccccccccccccccccccc
Confidence            55555555555555555554444

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.90  E-value=1e-05  Score=39.44  Aligned_cols=24  Identities=38%  Similarity=0.754  Sum_probs=17.0

Q ss_pred             cccCCCccccCChhHHHHHHHHhc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      |.|++|++.|.+...|+.|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578888888888888888887764

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.73  E-value=2.1e-05  Score=39.66  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=14.4

Q ss_pred             CccccccccccCChHHHHHHHHhhC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      +|.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3556666666666666666655543

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.72  E-value=2.2e-05  Score=53.44  Aligned_cols=73  Identities=27%  Similarity=0.296  Sum_probs=17.6

Q ss_pred             ccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHh
Q psy11318         31 QCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKI  108 (263)
Q Consensus        31 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  108 (263)
                      +|..|+..|.+...|..||...|+-..   . ....+.....+..++... ....+.|..|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccc---c-cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            488888888888888888877665321   1 111111222333333221 122577777777777777777777764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.57  E-value=0.0003  Score=56.91  Aligned_cols=130  Identities=22%  Similarity=0.433  Sum_probs=90.8

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcCCCceecccccc---ccc------chHHHHHHHHHhcCCCcc----cCCcCCC
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCNKCFR---AYK------LKKDLLAHTMLEHFGIRH----PCSECPK   93 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~---~f~------~~~~l~~H~~~~~~~~~~----~C~~C~~   93 (263)
                      .|.|+.  |..+......|+.|.+..|+.  +.|.+|-.   .|.      ++..|..|...--.+..|    .|..|..
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            488876  777777788899999987764  77887752   343      344555555332223233    6999999


Q ss_pred             cCCCHHHHHHHHHHhcCCccccCCCCCCC-----cccCCHHHHHHHHHHhCCCCCccCCc--ch----hhhcChHHHHHH
Q psy11318         94 TFASRHSLKNHILKIHKAVLYQCNECSTS-----KDYLTKRDLRRHMKLHFNGKRYHCTQ--CS----KFYIQESDLMEH  162 (263)
Q Consensus        94 ~f~~~~~l~~H~~~~~~~~~~~C~~C~~~-----~~f~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~~~~l~~H  162 (263)
                      .|-+...|..|++..|.    .|-+|...     .-|.+...|.+|.+.-+    |.|.+  |-    +.|.....|..|
T Consensus       229 ~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h  300 (493)
T COG5236         229 YFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEH  300 (493)
T ss_pred             eecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHH
Confidence            99999999999998875    46555521     34778888888886432    67755  42    568888899999


Q ss_pred             HhhccC
Q psy11318        163 MAVHSG  168 (263)
Q Consensus       163 ~~~h~~  168 (263)
                      +...|+
T Consensus       301 ~~~~h~  306 (493)
T COG5236         301 LTRFHK  306 (493)
T ss_pred             HHHHhh
Confidence            866554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.57  E-value=3.5e-05  Score=38.80  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=16.7

Q ss_pred             ccccCCCccccCChhHHHHHHHHhc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      +|.|..|++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4667777777777777777766544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.56  E-value=4.5e-05  Score=60.84  Aligned_cols=53  Identities=21%  Similarity=0.222  Sum_probs=45.1

Q ss_pred             CCCCccCCc--chhhhcChHHHHHHHhhcc-------------------CCCCCcCCCCcccccccceeeeccC
Q psy11318        140 NGKRYHCTQ--CSKFYIQESDLMEHMAVHS-------------------GVRKLTTGPIKTEQTFGVRELRHVG  192 (263)
Q Consensus       140 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~c~~c~~~~~~~~~l~~H~~  192 (263)
                      +++||+|++  |++.|+....|+-|+.--|                   ..+||+|++|++.+.....|..|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            458999988  9999999999999986432                   2389999999999999999998875

>KOG1146|consensus

Probab=97.56  E-value=2.4e-05  Score=73.34  Aligned_cols=80  Identities=23%  Similarity=0.445  Sum_probs=64.5

Q ss_pred             CCccccccccccCChHHHHHHHHhh--------------------------CCcccccCCCccccCChhHHHHHHHHhc-
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIH--------------------------KGVRYQCEECPKDFSTRKYLTQHQNAIH-   53 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h--------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~~-   53 (263)
                      |-|+|+.|+..|.....|..|||.-                          .+.+|.|..|...+..+++|-+|++... 
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h  543 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLH  543 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhh
Confidence            4689999999999999999999981                          1227999999999999999999997422 


Q ss_pred             CCC------------------------------------------ceecccccccccchHHHHHHHHHh
Q psy11318         54 RGI------------------------------------------RFQCNKCFRAYKLKKDLLAHTMLE   80 (263)
Q Consensus        54 ~~~------------------------------------------~~~C~~C~~~f~~~~~l~~H~~~~   80 (263)
                      ...                                          .|.|.+|++.-.-..+|..|+...
T Consensus       544 ~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss  612 (1406)
T KOG1146|consen  544 RNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTAS  612 (1406)
T ss_pred             HHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccC
Confidence            111                                          178999999888888888888543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.54  E-value=2.6e-05  Score=62.14  Aligned_cols=54  Identities=28%  Similarity=0.468  Sum_probs=44.0

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHHHhC-------------------CCCCccCCcchhhhcChHHHHHHHh
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMKLHF-------------------NGKRYHCTQCSKFYIQESDLMEHMA  164 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~  164 (263)
                      ++||+|++-||.+.|.+...|+-|+..-+                   ..|||+|++|++.|.....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            47888888888788888888888876422                   1379999999999999999998854

>smart00355 ZnF_C2H2 zinc finger

Probab=97.36  E-value=0.00017  Score=35.55  Aligned_cols=23  Identities=43%  Similarity=0.918  Sum_probs=13.6

Q ss_pred             ccccccccccCChHHHHHHHHhh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45666666666666666666544

>KOG2231|consensus

Probab=97.19  E-value=0.0011  Score=59.23  Aligned_cols=134  Identities=23%  Similarity=0.474  Sum_probs=88.8

Q ss_pred             ccccccccccC---------------ChHHHHHHHHhhCCcccccCCC---------ccccCChhHHHHHHHHhcC-CC-
Q psy11318          3 YYCNACSKNFS---------------AKDTLNKHMDIHKGVRYQCEEC---------PKDFSTRKYLTQHQNAIHR-GI-   56 (263)
Q Consensus         3 y~C~~C~~~f~---------------~~~~L~~H~~~h~~~~~~C~~C---------~~~f~~~~~l~~H~~~~~~-~~-   56 (263)
                      +.|.+|+..|+               +...|+.|+...++ -+.|..|         .....+...|.+|++.--. ++ 
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~-~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s  178 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHK-LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDES  178 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhh-hhccccccccceeeeeeeehehHHHHHHHHhcCCCcccc
Confidence            56788887774               77889999966555 3455554         2334566778999876322 22 


Q ss_pred             ---ceecccccccccchHHHHHHHHHhcCCCcccCCcC------CCcCCCHHHHHHHHHHhcCCccccCC--CCCCCccc
Q psy11318         57 ---RFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSEC------PKTFASRHSLKNHILKIHKAVLYQCN--ECSTSKDY  125 (263)
Q Consensus        57 ---~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~~~f  125 (263)
                         --.|..|...|.....|..|++.+|    |.|..|      +.-|.....|..|.+.+|    |.|.  .|.+. .|
T Consensus       179 ~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~-~f  249 (669)
T KOG2231|consen  179 CRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTK-KF  249 (669)
T ss_pred             ccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccc-ee
Confidence               2579999999999999999998777    556665      345777899999999887    4665  56542 33


Q ss_pred             CCH----HHHHHHHHHhCCCCCccC
Q psy11318        126 LTK----RDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       126 ~~~----~~l~~H~~~h~~~~~~~C  146 (263)
                      ...    -.|++|.+.+.-++.|.|
T Consensus       250 ~~~~~~ei~lk~~~~~~~~e~~~~~  274 (669)
T KOG2231|consen  250 YVAFELEIELKAHNRFIQHEKCYIC  274 (669)
T ss_pred             eehhHHHHHHHhhccccchheeccC
Confidence            333    344444433333444555

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.14  E-value=0.00027  Score=34.37  Aligned_cols=22  Identities=41%  Similarity=0.797  Sum_probs=10.0

Q ss_pred             ccccccccccCChHHHHHHHHhh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      |+|++|++... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            44555555554 44555555443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.07  E-value=0.0004  Score=39.68  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=18.0

Q ss_pred             cccccCCCccccCChhHHHHHHHHhcCCC
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQNAIHRGI   56 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   56 (263)
                      .|..|++|+..+....+|++|+...|+.+
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            37778888888888888888877766654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146|consensus

Probab=97.06  E-value=0.00017  Score=67.88  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=81.5

Q ss_pred             cccccccccchHHHHHHHHHhc-CCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318         60 CNKCFRAYKLKKDLLAHTMLEH-FGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus        60 C~~C~~~f~~~~~l~~H~~~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      |.-|+..+.+...+.-|+...+ ..+.++|+.|+..|.....|..|+|..|.+-.-  .+|   +.+.....+.+-....
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c---~~gq~~~~~arg~~~~  513 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYC---KAGQNHPRLARGEVYR  513 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHh---Hhcccccccccccccc
Confidence            3344444555555555543333 337788999999998888899998886643211  223   2222222222212223


Q ss_pred             CCCCCccCCcchhhhcChHHHHHHHhhc--c----------C-------------------------------CCCCcCC
Q psy11318        139 FNGKRYHCTQCSKFYIQESDLMEHMAVH--S----------G-------------------------------VRKLTTG  175 (263)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~----------~-------------------------------~~~~~c~  175 (263)
                      .+.++|.|..|.+.++...+|.+|+..-  -          +                               .-.+.|.
T Consensus       514 ~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~  593 (1406)
T KOG1146|consen  514 CPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCE  593 (1406)
T ss_pred             CCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchh
Confidence            3556788888888888888888887421  1          0                               0237899


Q ss_pred             CCcccccccceeeeccCC
Q psy11318        176 PIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       176 ~c~~~~~~~~~l~~H~~~  193 (263)
                      +|++..+-..+|+.|+..
T Consensus       594 vc~yetniarnlrihmts  611 (1406)
T KOG1146|consen  594 VCSYETNIARNLRIHMTA  611 (1406)
T ss_pred             hhcchhhhhhcccccccc
Confidence            999999999999999985

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.04  E-value=0.00053  Score=33.32  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=15.7

Q ss_pred             cccCCCccccCChhHHHHHHHHhc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      |+|+.|++... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            57788887777 777888877765

>smart00355 ZnF_C2H2 zinc finger

Probab=96.97  E-value=0.00086  Score=32.90  Aligned_cols=23  Identities=35%  Similarity=0.765  Sum_probs=16.7

Q ss_pred             cccCCCccccCChhHHHHHHHHh
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAI   52 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~   52 (263)
                      |.|..|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46777777777777777777753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.95  E-value=0.00059  Score=39.01  Aligned_cols=31  Identities=16%  Similarity=0.330  Sum_probs=17.0

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhccCCCC
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      +.|-.|+.|+..+.+.-+|++|+...|+.+|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4556677777777777777777766666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.93  E-value=0.00056  Score=33.56  Aligned_cols=22  Identities=36%  Similarity=1.059  Sum_probs=11.1

Q ss_pred             ccccccccccCChHHHHHHHHh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDI   24 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~   24 (263)
                      |.|..|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3455555555555555555543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.78  E-value=0.00076  Score=33.08  Aligned_cols=22  Identities=36%  Similarity=0.780  Sum_probs=15.0

Q ss_pred             cccCCCccccCChhHHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      |.|.+|++.|.+...|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4577777777777777777654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.70  E-value=0.0023  Score=52.02  Aligned_cols=130  Identities=25%  Similarity=0.419  Sum_probs=90.2

Q ss_pred             Ccccc--ccccccCChHHHHHHHHhhCCcccccCCCc---cccC------ChhHHHHHHHHhcCCCc----eeccccccc
Q psy11318          2 RYYCN--ACSKNFSAKDTLNKHMDIHKGVRYQCEECP---KDFS------TRKYLTQHQNAIHRGIR----FQCNKCFRA   66 (263)
Q Consensus         2 ~y~C~--~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~---~~f~------~~~~l~~H~~~~~~~~~----~~C~~C~~~   66 (263)
                      .|.||  .|..+......|+.|....++ .+.|.+|-   +.|.      +...|..|......+.=    -.|..|...
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~  229 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY  229 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC-cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence            35664  366677778999999988877 46777772   3343      44557777654332222    469999999


Q ss_pred             ccchHHHHHHHHHhcCCCcccCCcCCCc-------CCCHHHHHHHHHHhcCCccccCCCCC----CCcccCCHHHHHHHH
Q psy11318         67 YKLKKDLLAHTMLEHFGIRHPCSECPKT-------FASRHSLKNHILKIHKAVLYQCNECS----TSKDYLTKRDLRRHM  135 (263)
Q Consensus        67 f~~~~~l~~H~~~~~~~~~~~C~~C~~~-------f~~~~~l~~H~~~~~~~~~~~C~~C~----~~~~f~~~~~l~~H~  135 (263)
                      |..-..|..|++..|.    .|.+|++.       |.+...|..|.+..|    |.|.+=.    ....|.....|..|+
T Consensus       230 FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         230 FYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             ecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHH
Confidence            9999999999987773    46666553       778889999988655    4442211    126799999999999


Q ss_pred             HHhCC
Q psy11318        136 KLHFN  140 (263)
Q Consensus       136 ~~h~~  140 (263)
                      ...++
T Consensus       302 ~~~h~  306 (493)
T COG5236         302 TRFHK  306 (493)
T ss_pred             HHHhh
Confidence            76554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.53  E-value=0.00084  Score=33.67  Aligned_cols=22  Identities=45%  Similarity=1.087  Sum_probs=12.8

Q ss_pred             ccccccccccCChHHHHHHHHh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDI   24 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~   24 (263)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5566666666666666665543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2785|consensus

Probab=96.45  E-value=0.0084  Score=49.58  Aligned_cols=49  Identities=27%  Similarity=0.561  Sum_probs=36.2

Q ss_pred             ccccccccccCChHHHHHHHHhh--------------------------------------CCcccccCCCccccCChhH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIH--------------------------------------KGVRYQCEECPKDFSTRKY   44 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h--------------------------------------~~~~~~C~~C~~~f~~~~~   44 (263)
                      |+|.-|...|.+...-+.|+.+.                                      .+.++.|.+|.+.|.....
T Consensus         4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a   83 (390)
T KOG2785|consen    4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA   83 (390)
T ss_pred             ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence            78999999999998899998763                                      0114677777777777777


Q ss_pred             HHHHHHH
Q psy11318         45 LTQHQNA   51 (263)
Q Consensus        45 l~~H~~~   51 (263)
                      ...|+..
T Consensus        84 ~~~hl~S   90 (390)
T KOG2785|consen   84 HENHLKS   90 (390)
T ss_pred             HHHHHHH
Confidence            7777654

>PRK04860 hypothetical protein; Provisional

Probab=96.31  E-value=0.0018  Score=47.79  Aligned_cols=39  Identities=18%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccc
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGV  185 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~  185 (263)
                      +|.|. |+.   ....+.+|.++|.+.++|.|..|+..+....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            58887 876   6667788888888888888888888776544

>KOG2785|consensus

Probab=96.15  E-value=0.0079  Score=49.75  Aligned_cols=51  Identities=14%  Similarity=0.018  Sum_probs=36.8

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCC-----------------------CCCcCCCCc---ccccccceeeeccCC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGV-----------------------RKLTTGPIK---TEQTFGVRELRHVGF  193 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~c~~c~---~~~~~~~~l~~H~~~  193 (263)
                      |-.|..|++.+.+...-..||..+||.                       ..|.|-.|+   +.|.+.+..+.||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            456777888888777777788777763                       235666677   788888887888764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.10  E-value=0.0013  Score=32.93  Aligned_cols=22  Identities=36%  Similarity=0.798  Sum_probs=17.6

Q ss_pred             cccCCCccccCChhHHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.94  E-value=0.0043  Score=45.85  Aligned_cols=34  Identities=18%  Similarity=0.681  Sum_probs=16.0

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceecccccccc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAY   67 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f   67 (263)
                      |.|. |+.   ....+.+|.+++.++.+|.|..|+..|
T Consensus       120 Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        120 YRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             EEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCcee
Confidence            4444 444   344444454444444445554444444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.53  E-value=0.0017  Score=56.36  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             ccccCCCccccCChhHHHHHHH--HhcCC--Cceecc--cccccccchHHHHHHHHHhcCCCcccC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQN--AIHRG--IRFQCN--KCFRAYKLKKDLLAHTMLEHFGIRHPC   88 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C   88 (263)
                      ++.|..|...|.....|.+|.+  .|.++  +++.|.  .|++.|.+...+..|...+.....+.+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            3555555555555555555555  44555  455555  455555555555555544444443333

>KOG2482|consensus

Probab=95.46  E-value=0.033  Score=45.45  Aligned_cols=134  Identities=19%  Similarity=0.310  Sum_probs=82.3

Q ss_pred             ccccccccc-cCChHHHHHHHHhhCCc-----------------------ccccCCCccccCChhHHHHHHHHhc-CCCc
Q psy11318          3 YYCNACSKN-FSAKDTLNKHMDIHKGV-----------------------RYQCEECPKDFSTRKYLTQHQNAIH-RGIR   57 (263)
Q Consensus         3 y~C~~C~~~-f~~~~~L~~H~~~h~~~-----------------------~~~C~~C~~~f~~~~~l~~H~~~~~-~~~~   57 (263)
                      .+|..|... -+.+...-.|+-.-++.                       .+.|-.|.+.|.++..|+.||+... ....
T Consensus       145 lqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrrin  224 (423)
T KOG2482|consen  145 LQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRIN  224 (423)
T ss_pred             eEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcccC
Confidence            468888875 34566666776443331                       4899999999999999999998632 2221


Q ss_pred             eecccccccc--------cchHHHHHHH----HHhcCC-------------Cc--ccCCcCCCcCCCHHHHHHHHHHhcC
Q psy11318         58 FQCNKCFRAY--------KLKKDLLAHT----MLEHFG-------------IR--HPCSECPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        58 ~~C~~C~~~f--------~~~~~l~~H~----~~~~~~-------------~~--~~C~~C~~~f~~~~~l~~H~~~~~~  110 (263)
                      -+-...++.|        .+......+.    ....++             .+  ..|-.|.....+...|..||+..|.
T Consensus       225 PknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe  304 (423)
T KOG2482|consen  225 PKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHE  304 (423)
T ss_pred             CCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHH
Confidence            1111111111        0111111111    001111             11  4788899888889999999988773


Q ss_pred             C---------------------------ccccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        111 A---------------------------VLYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       111 ~---------------------------~~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      -                           ....|-.|.  ..|-....|..|+..+
T Consensus       305 ~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd--~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  305 FDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECD--LSFWKEPGLLIHMVED  357 (423)
T ss_pred             hhHHhhccccccchhhhhhHHHHHHHHhhcccccccc--ccccCcchhhhhcccc
Confidence            1                           124677787  7899999999999743

>KOG2893|consensus

Probab=95.43  E-value=0.003  Score=48.61  Aligned_cols=50  Identities=34%  Similarity=0.548  Sum_probs=37.9

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCC
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFG   83 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   83 (263)
                      -.|=+|++.|.+...|++|++..|    |+|-+|.+...+--.|..|.+..|.+
T Consensus        11 pwcwycnrefddekiliqhqkakh----fkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceeehhhhhhh
Confidence            367789999999999999988866    88888888776666666665444433

>KOG2482|consensus

Probab=95.33  E-value=0.042  Score=44.83  Aligned_cols=50  Identities=22%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             ccCCcchhhhcChHHHHHHHhhccC---------------------------CCCCcCCCCcccccccceeeeccCC
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVHSG---------------------------VRKLTTGPIKTEQTFGVRELRHVGF  193 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------~~~~~c~~c~~~~~~~~~l~~H~~~  193 (263)
                      .+|..|....-+...|..||..-|.                           .....|-.|...|.....|+.||..
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            5899999999989999999976542                           1234788999999999999999975

>KOG4173|consensus

Probab=95.13  E-value=0.011  Score=44.53  Aligned_cols=105  Identities=23%  Similarity=0.436  Sum_probs=52.5

Q ss_pred             ccCChhHHHHHHHHhc-----CCC-------ceeccc--ccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHH
Q psy11318         38 DFSTRKYLTQHQNAIH-----RGI-------RFQCNK--CFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKN  103 (263)
Q Consensus        38 ~f~~~~~l~~H~~~~~-----~~~-------~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~  103 (263)
                      .|.-.+++++|+...-     .+.       .|.|++  |-..|........|-..-|+   ..|..|.+.|++...|..
T Consensus        48 pFf~~G~v~r~l~~~~V~~d~~d~~~~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~  124 (253)
T KOG4173|consen   48 PFFEDGDVQRHLYLQDVIMDVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDA  124 (253)
T ss_pred             cchhcccHHHHHhHhhheeeccccccccccccccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhH
Confidence            4556667777765321     000       145544  44555555544444333332   245555555555555555


Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCc--chhhhcChHHHHHHHhh
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAV  165 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~  165 (263)
                      |+...|..            -|.        .....|.-.|.|.+  |+..|.+.-.-++|+-.
T Consensus       125 HI~E~HDs------------~Fq--------a~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  125 HILEWHDS------------LFQ--------ALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHHHHHH------------HHH--------HHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence            55544420            000        00112344567755  77777777777777643

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.97  E-value=0.019  Score=30.57  Aligned_cols=21  Identities=24%  Similarity=0.855  Sum_probs=10.9

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~   23 (263)
                      |.|.+|+..|.+...+..|++
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            445555555555555555543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.78  E-value=0.0059  Score=52.90  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             CceecccccccccchHHHHHHHH--HhcCC--CcccCC--cCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHH
Q psy11318         56 IRFQCNKCFRAYKLKKDLLAHTM--LEHFG--IRHPCS--ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKR  129 (263)
Q Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~  129 (263)
                      ..+.|..|...|.....|..|..  .|..+  +++.|+  .|++.|.+...+..|...|.+..++.+..-.+...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            35788999999999999999998  68888  899999  7999999999999999999888777775544334443333


Q ss_pred             HHHHHH-----HHhCCCCCccCCc--chhhhcChHHHHHHHhhccCCC--CCcCCCCcccccccceeeeccCCCccc
Q psy11318        130 DLRRHM-----KLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVR--KLTTGPIKTEQTFGVRELRHVGFPMKT  197 (263)
Q Consensus       130 ~l~~H~-----~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~--~~~c~~c~~~~~~~~~l~~H~~~~~~~  197 (263)
                      .-..+.     ..-...+.+.+..  |...+.+...+..|...|....  .+.+..|...+.....+..|++.+...
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNH  444 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccC
Confidence            311111     1112233455544  7777778878888877777665  467788889898888888888876543

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.21  E-value=0.024  Score=29.79  Aligned_cols=24  Identities=21%  Similarity=0.761  Sum_probs=14.2

Q ss_pred             ccccccccccCChHHHHHHHHhhCCcccccCCCcc
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPK   37 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~   37 (263)
                      |.|..||..+.-..           .++.|++||.
T Consensus         2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-----------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence            56667776655432           4566666654

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.20  E-value=0.045  Score=26.73  Aligned_cols=19  Identities=37%  Similarity=0.795  Sum_probs=11.6

Q ss_pred             cccccccccCChHHHHHHHH
Q psy11318          4 YCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         4 ~C~~C~~~f~~~~~L~~H~~   23 (263)
                      .|+.||..| ..+.|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 3566666654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.19  E-value=0.048  Score=26.65  Aligned_cols=21  Identities=24%  Similarity=0.612  Sum_probs=14.5

Q ss_pred             cccCCCccccCChhHHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      ..|+.||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4677888877 56667777653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.07  E-value=0.035  Score=29.44  Aligned_cols=23  Identities=17%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             ccccCCCccccCChhHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      +|.|.+|++.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57788888888888888888765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=94.04  E-value=0.024  Score=30.88  Aligned_cols=36  Identities=25%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCcccccCCCccccC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFS   40 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~   40 (263)
                      |.+.|+.|+..|.-......    ..+....|+.|+..|.
T Consensus         1 M~~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             CEEECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence            56778888887765544321    1223567777777664

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG2893|consensus

Probab=94.01  E-value=0.016  Score=44.77  Aligned_cols=51  Identities=24%  Similarity=0.555  Sum_probs=42.1

Q ss_pred             CccccccccccCChHHHHHHHHhhCCcccccCCCccccCChhHHHHHHHHhcCC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRG   55 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   55 (263)
                      +-+|=+|+..|...+.|..|+   ..+-|+|.+|.|...+--.|..|-+..|.+
T Consensus        10 kpwcwycnrefddekiliqhq---kakhfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   10 KPWCWYCNREFDDEKILIQHQ---KAKHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             Cceeeecccccchhhhhhhhh---hhccceeeeehhhhccCCCceeehhhhhhh
Confidence            348999999999999999998   445699999998888877788887765644

>TIGR00622 ssl1 transcription factor ssl1

Probab=93.22  E-value=0.11  Score=35.59  Aligned_cols=49  Identities=18%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        115 QCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       115 ~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      .|-.|+  ..|........-  .-.....|.|+.|...|-..-+...|...|.
T Consensus        57 ~C~~C~--~~f~~~~~~~~~--~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        57 FCFGCQ--GPFPKPPVSPFD--ELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccCcC--CCCCCccccccc--ccccccceeCCCCCCccccccchhhhhhccC
Confidence            477777  666543211100  0122345888888888888888888877775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2186|consensus

Probab=92.78  E-value=0.047  Score=42.65  Aligned_cols=54  Identities=24%  Similarity=0.628  Sum_probs=40.9

Q ss_pred             ccccccccccCChHHHHHHHHhhCCcccccCCCccccCChhHHHHHHHHhcCCCce
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRF   58 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~   58 (263)
                      |.|..||.... +..|-.|+....+..|.|-.|++.|.. ..++.|..-......|
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCITEaQKY   57 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCITEAQKY   57 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhhhhcchHHHh
Confidence            67888888765 566777888888888888888888888 6678887655544433

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.73  E-value=0.2  Score=34.54  Aligned_cols=26  Identities=19%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CccC----CcchhhhcChHHHHHHHhhccC
Q psy11318        143 RYHC----TQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       143 ~~~C----~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      .|.|    ..|++.+.+...+.+|++.+||
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3788    8888888888888888887764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.59  E-value=0.06  Score=28.91  Aligned_cols=35  Identities=26%  Similarity=0.582  Sum_probs=21.2

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCcccccCCCcccc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDF   39 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f   39 (263)
                      |...|+.|+..|.-.+...    --.+...+|..|+..|
T Consensus         1 M~i~Cp~C~~~y~i~d~~i----p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDDEKI----PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             CEEECCCCCCEEeCCHHHC----CCCCcEEECCCCCCEe
Confidence            4567777777776655432    1234456777777665

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.44  E-value=0.2  Score=34.38  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=13.3

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      .|+|+.|.  ..|-..-++-.|...|
T Consensus        81 ~y~C~~C~--~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCK--NVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCC--Cccccccchhhhhhcc
Confidence            45666666  5555555555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.07  E-value=0.022  Score=44.50  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=16.0

Q ss_pred             CCccccccccccCChHHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~   23 (263)
                      |.+.||+|++.|.++..+....+
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r   26 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIR   26 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCce
Confidence            56788888888887765555543

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=91.92  E-value=0.094  Score=30.61  Aligned_cols=30  Identities=17%  Similarity=0.455  Sum_probs=24.8

Q ss_pred             CCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        139 FNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      .||.-++|+.||..|....++.+|....|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            466778899999999999999999876654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=91.69  E-value=0.4  Score=33.05  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             ccC----CcCCCcCCCHHHHHHHHHHhcC
Q psy11318         86 HPC----SECPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        86 ~~C----~~C~~~f~~~~~l~~H~~~~~~  110 (263)
                      |.|    ..|+..+.+...|..|++.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            778    8899999999999999988875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG4173|consensus

Probab=91.54  E-value=0.1  Score=39.45  Aligned_cols=79  Identities=25%  Similarity=0.501  Sum_probs=59.5

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhc----------CCCcccC--CcCCCc
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEH----------FGIRHPC--SECPKT   94 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~----------~~~~~~C--~~C~~~   94 (263)
                      .|.|++  |-..|.+...+..|-.+.|+   -.|..|.+.|.+..-|..|+..-|          +...|.|  ..|+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            467776  77788888888888777666   378888888888888888875443          3455788  458888


Q ss_pred             CCCHHHHHHHHHHhcC
Q psy11318         95 FASRHSLKNHILKIHK  110 (263)
Q Consensus        95 f~~~~~l~~H~~~~~~  110 (263)
                      |.+...-..|+-..|.
T Consensus       156 FkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhhHHHHhcc
Confidence            8888888888766653

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=90.51  E-value=0.13  Score=27.23  Aligned_cols=25  Identities=16%  Similarity=0.474  Sum_probs=14.5

Q ss_pred             CccccccccccCChHHHHHHHHhhCCcccccCCCcc
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPK   37 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~   37 (263)
                      .|.|..||..+...           ..|-.|++|+.
T Consensus         2 ~~~C~~CG~i~~g~-----------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE-----------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC-----------cCCCcCcCCCC
Confidence            46677777665432           13556777764

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.07  E-value=0.15  Score=29.85  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=14.4

Q ss_pred             CcccCCcCCCcCCCHHHHHHHHHHhc
Q psy11318         84 IRHPCSECPKTFASRHSLKNHILKIH  109 (263)
Q Consensus        84 ~~~~C~~C~~~f~~~~~l~~H~~~~~  109 (263)
                      ..+.|+.|+..|...-.+.+|....|
T Consensus        16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          16 EFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             eeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            44555555555555555555555544

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.60  E-value=0.19  Score=27.11  Aligned_cols=36  Identities=25%  Similarity=0.523  Sum_probs=19.5

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCcccccCCCccccC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFS   40 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~   40 (263)
                      |...|+.|+..|.-...-    ..-.+...+|+.|+..|.
T Consensus         1 M~i~CP~C~~~f~v~~~~----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPDDK----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCHHH----cccCCcEEECCCCCcEee
Confidence            445677777766654431    112334566666666553

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=87.74  E-value=0.31  Score=27.49  Aligned_cols=28  Identities=29%  Similarity=0.636  Sum_probs=17.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCcccccCCCccc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKD   38 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~   38 (263)
                      +.|.|..||..|...          .+.+..|+.||..
T Consensus         1 ~~Y~C~~Cg~~~~~~----------~~~~irC~~CG~r   28 (44)
T smart00659        1 MIYICGECGRENEIK----------SKDVVRCRECGYR   28 (44)
T ss_pred             CEEECCCCCCEeecC----------CCCceECCCCCce
Confidence            357777887776633          3346777777654

present in RNA polymerase I, II and III

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=87.71  E-value=0.23  Score=39.14  Aligned_cols=92  Identities=13%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             hcCCCcccCCcCCCcCCCHHHHHHHHHHhc--CCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChH
Q psy11318         80 EHFGIRHPCSECPKTFASRHSLKNHILKIH--KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQES  157 (263)
Q Consensus        80 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~--~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  157 (263)
                      .|+++.|.|..|...+- ...-..|+.+-.  ....|+|..|+  + +                -.|.|..|...|-.-.
T Consensus       137 ~hGGrif~CsfC~~flC-EDDQFEHQAsCQvLe~E~~KC~SCN--r-l----------------Gq~sCLRCK~cfCddH  196 (314)
T PF06524_consen  137 DHGGRIFKCSFCDNFLC-EDDQFEHQASCQVLESETFKCQSCN--R-L----------------GQYSCLRCKICFCDDH  196 (314)
T ss_pred             cCCCeEEEeecCCCeee-ccchhhhhhhhhhhhcccccccccc--c-c----------------cchhhhheeeeehhhh
Confidence            35777888888775332 222233433221  23457777775  2 1                1244554444443322


Q ss_pred             HHHHHHhhccCCCCCcCCCCcccccccceeeeccC
Q psy11318        158 DLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVG  192 (263)
Q Consensus       158 ~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~~  192 (263)
                      ...+-.. ....+++.|+.|++....-..|--..+
T Consensus       197 vrrKg~k-y~k~k~~PCPKCg~et~eTkdLSmStR  230 (314)
T PF06524_consen  197 VRRKGFK-YEKGKPIPCPKCGYETQETKDLSMSTR  230 (314)
T ss_pred             hhhcccc-cccCCCCCCCCCCCcccccccceeeee
Confidence            1111111 122356677777766654444443333

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=86.26  E-value=0.56  Score=32.23  Aligned_cols=13  Identities=23%  Similarity=0.662  Sum_probs=6.2

Q ss_pred             cccCCcCCCcCCC
Q psy11318         85 RHPCSECPKTFAS   97 (263)
Q Consensus        85 ~~~C~~C~~~f~~   97 (263)
                      |..|++||..|.-
T Consensus        26 PivCP~CG~~~~~   38 (108)
T PF09538_consen   26 PIVCPKCGTEFPP   38 (108)
T ss_pred             CccCCCCCCccCc
Confidence            4445555554443

The function of members of this family is unknown.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=85.73  E-value=0.72  Score=36.44  Aligned_cols=94  Identities=21%  Similarity=0.358  Sum_probs=55.0

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHhc--CCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHH
Q psy11318         52 IHRGIRFQCNKCFRAYKLKKDLLAHTMLEH--FGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKR  129 (263)
Q Consensus        52 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~  129 (263)
                      .|+++.|.|..|......-..+ .|+.+-.  ....|+|..|++.                 ..|.|..|.  .-|-...
T Consensus       137 ~hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrl-----------------Gq~sCLRCK--~cfCddH  196 (314)
T PF06524_consen  137 DHGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRL-----------------GQYSCLRCK--ICFCDDH  196 (314)
T ss_pred             cCCCeEEEeecCCCeeeccchh-hhhhhhhhhhcccccccccccc-----------------cchhhhhee--eeehhhh
Confidence            4677889999999865544443 3443322  2367899999863                 124555554  3332221


Q ss_pred             HHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhc
Q psy11318        130 DLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       130 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      ....-... ...+++.|+.|++.......|..-.+.|
T Consensus       197 vrrKg~ky-~k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  197 VRRKGFKY-EKGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             hhhccccc-ccCCCCCCCCCCCcccccccceeeeecc
Confidence            11111112 2347899999998887777776555555

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.15  E-value=0.17  Score=27.87  Aligned_cols=11  Identities=36%  Similarity=1.159  Sum_probs=6.5

Q ss_pred             ccccccccccC
Q psy11318          3 YYCNACSKNFS   13 (263)
Q Consensus         3 y~C~~C~~~f~   13 (263)
                      |+|+.||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            55666666554

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.14  E-value=0.44  Score=34.89  Aligned_cols=36  Identities=17%  Similarity=0.438  Sum_probs=24.4

Q ss_pred             cccccCCCccccCChhHHHHHHHHhcCCCceecccccccc
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAY   67 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f   67 (263)
                      .-|.|+.|+..|.....+..-    .....|.|+.||...
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~~----d~~~~f~Cp~Cg~~l  133 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQLL----DMDGTFTCPRCGEEL  133 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHhc----CCCCcEECCCCCCEE
Confidence            379999999888865543320    123449999999765

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=83.19  E-value=0.67  Score=34.40  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=14.9

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcc
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKT  179 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~  179 (263)
                      -|+|++||+.             +-|+-|.+|++|+-
T Consensus       134 ~~vC~vCGy~-------------~~ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCCCcCCCCCC
Confidence            4777777654             33566677777763

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=82.52  E-value=0.27  Score=28.75  Aligned_cols=11  Identities=45%  Similarity=1.222  Sum_probs=5.7

Q ss_pred             ccccccccccC
Q psy11318          3 YYCNACSKNFS   13 (263)
Q Consensus         3 y~C~~C~~~f~   13 (263)
                      |+|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (52)
T TIGR02605         6 YRCTACGHRFE   16 (52)
T ss_pred             EEeCCCCCEeE
Confidence            45555555444

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.14  E-value=1.1  Score=30.82  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=23.0

Q ss_pred             ccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCccccccc
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFG  184 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~  184 (263)
                      ..|+.||..|...           +..|.+|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            6788888888654           34778888888887665

The function of members of this family is unknown.

>PF15269 zf-C2H2_7: Zinc-finger

Probab=82.11  E-value=1  Score=25.06  Aligned_cols=21  Identities=29%  Similarity=0.687  Sum_probs=10.2

Q ss_pred             cccCCCccccCChhHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQN   50 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~   50 (263)
                      |+|-+|..+..-++.|-.||+
T Consensus        21 ykcfqcpftc~~kshl~nhmk   41 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMK   41 (54)
T ss_pred             ceeecCCcccchHHHHHHHHH
Confidence            344444444444555555543

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.00  E-value=0.32  Score=27.67  Aligned_cols=12  Identities=25%  Similarity=0.902  Sum_probs=6.8

Q ss_pred             CccccccccccC
Q psy11318          2 RYYCNACSKNFS   13 (263)
Q Consensus         2 ~y~C~~C~~~f~   13 (263)
                      .|.|+.||..|.
T Consensus         3 ~y~C~~CG~~~~   14 (46)
T PRK00398          3 EYKCARCGREVE   14 (46)
T ss_pred             EEECCCCCCEEE
Confidence            456666666543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=81.95  E-value=0.18  Score=37.02  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=10.9

Q ss_pred             cccCCCccccCChhHH
Q psy11318         30 YQCEECPKDFSTRKYL   45 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l   45 (263)
                      ++|+-||+.|.+...+
T Consensus        29 ~~c~~c~~~f~~~e~~   44 (154)
T PRK00464         29 RECLACGKRFTTFERV   44 (154)
T ss_pred             eeccccCCcceEeEec
Confidence            6777777777766543

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.66  E-value=1.3  Score=24.90  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=13.3

Q ss_pred             ccccCCCccccCCh----hHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTR----KYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~----~~l~~H~~~   51 (263)
                      ..+|.+|++.+...    ..|++|++.
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            56788888777663    667777754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.35  E-value=0.24  Score=38.72  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=14.6

Q ss_pred             ccccCCCccccCChhHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQN   50 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~   50 (263)
                      ...||+|+..|.+........+
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r   26 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIR   26 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCce
Confidence            4678888888877765544443

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=81.24  E-value=1.5  Score=21.52  Aligned_cols=19  Identities=26%  Similarity=0.772  Sum_probs=10.1

Q ss_pred             cccccccccCChHHHHHHHH
Q psy11318          4 YCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         4 ~C~~C~~~f~~~~~L~~H~~   23 (263)
                      .||+|++.+ ....++.|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            456666655 3445555553

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		7e-17
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-07
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		7e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		6e-05
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		4e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		6e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		1e-04
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		3e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		3e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		4e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C  C K+FS  D L +H   H G + Y+C EC K FS +K LT+HQ   H G + ++C
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
            +C +++  + +L AH         + C EC K+F+    L+ H         Y+C EC 
Sbjct: 81  PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC- 139
Query: 121 TSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
             K +  + +L  H + H   K Y C +C K + +   L  H   H+G +
Sbjct: 140 -GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 74  LAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRR 133
           +A   LE     + C EC K+F+    L  H         Y+C EC   K +  K+DL R
Sbjct: 10  VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG--KSFSDKKDLTR 67
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
           H + H   K Y C +C K + Q ++L  H   H+G +
Sbjct: 68  HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 5   CNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ--NAIHRGIR-FQC 60
           C  C K F +K  L  H   H G + ++C +C K +  ++ L +H+  N ++R  + F C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 61  NKCFRAYKLKKDLLAHTMLEHFG-IRHPCSECPKTFASRHSLKNHILKIHKA 111
           + C   ++ + +L  H M+ H G + + CS C + F  +  L++H++K+H  
Sbjct: 70  SVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 36/143 (25%)
Query: 31  QCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTM---LEHFGIRH 86
           +C  C K F ++ YL  H N  H G + F+C KC + Y  K++LL H     +       
Sbjct: 9   ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 87  PCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
            CS C +TF  R                               +LR HM  H     Y C
Sbjct: 68  TCSVCQETFRRR------------------------------MELRLHMVSHTGEMPYKC 97
Query: 147 TQCSKFYIQESDLMEHMA-VHSG 168
           + CS+ ++Q+ DL  HM  +HSG
Sbjct: 98  SSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
          Y C  C K+FS    L KH   H G + Y+C EC K FS    L +HQ   H G + ++C
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 61 NKCFRAYKLKKDLLAH 76
           +C +++     L  H
Sbjct: 64 PECGKSFSRSDHLSRH 79

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 88  CSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
           C EC K+F+   +L+ H         Y+C EC   K +    DL++H + H   K Y C 
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECG--KSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 148 QCSKFYIQESDLMEHMAVH 166
           +C K + +   L  H   H
Sbjct: 65  ECGKSFSRSDHLSRHQRTH 83

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 7   ACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC--NKC 63
            C+K F     + KH+  H    + C EC K F     L +HQ  +H G + FQC    C
Sbjct: 12  GCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGC 70
Query: 64  FRAYKLKKDLLAHTMLEHFGIRH---PCSECPKTFASRHSLKNHILKIHKA 111
            + + L  +L  H  + H G R    P   C K FA   +LK+HIL   KA
Sbjct: 71  GKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 86  HPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYH 145
           H C+EC K F     LK H L       +QC      K +    +LR H+++H   + Y 
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 146 C--TQCSKFYIQESDLMEHMAVHSGVR 170
           C    C+K + Q ++L  H+  H+  +
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHAKAK 121

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y+C+EC   K +    DL +H + H   K Y C +C K +IQ S L+ H  VH+G
Sbjct: 19  YKCDECG--KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 8  CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFR 65
          C K+F+ K   ++HM +H G+R Y C  C K F  + +L  H   IH GI+ ++CN C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAK 73
Query: 66 AYKLKKDLLAHT 77
           +  +     H 
Sbjct: 74 RFMWRDSFHRHV 85

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 63  CFRAYKLKKDLLAHTMLEHFGI----RHPC--SECP---KTFASRHSLKNHILKIHKAVL 113
           C R +    +L+ H  +EH G      H C   ECP   K+F +++ L NHI        
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHS 167
           + C      K +    +L+ H + H   K + C    C + +   SD  +HM VH+
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3  YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
          Y C   +C + FS  D L +H+ IH G + +QC  C ++FS   +LT H    H G + F
Sbjct: 4  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
           C+ C R +    +   HT +
Sbjct: 63 ACDICGRKFARSDERKRHTKI 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3  YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
          Y C   +C + FS  D L +H+ IH G + +QC  C ++FS   +LT H    H G + F
Sbjct: 5  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
           C+ C R +    +   HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3  YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
          Y C   +C + FS  D L +H+ IH G + +QC  C ++FS   +LT H    H G + F
Sbjct: 5  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
           C+ C R +    +   HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 88  CSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
           C  C K+F    +L  H+L       Y C  C   K +  K D+++H  +H   K + C 
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCG--KRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 148 QCSKFYIQESDLMEHMAVHSG 168
            C K + Q S+L+ H   H+G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-23
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-19
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-18
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-14
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-11
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-16
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-16
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-13
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-12
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-10
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	6e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-09
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	8e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	8e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	9e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-05
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-05
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	5e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	5e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	6e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 93.7 bits (234), Expect = 1e-23
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C  C K+FS  D L +H   H G + Y+C EC K FS +K LT+HQ   H G + ++C
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQC 116
            +C +++  + +L AH    H G + + C EC K+F+    L+ H  + H   K   Y+C
Sbjct: 81  PECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKP--YKC 136

Query: 117 NECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
            EC   K +  + +L  H + H   K Y C +C K + +   L  H   H+G
Sbjct: 137 PEC--GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 81.7 bits (203), Expect = 3e-19
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 12  FSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKL 69
                +      +  G + Y C EC K FS   +L +HQ   H G + ++C +C +++  
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61

Query: 70  KKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDY 125
           KKDL  H    H G + + C EC K+F+ R +L+ H  + H   K   Y C EC   K +
Sbjct: 62  KKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKP--YACPEC--GKSF 115

Query: 126 LTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
                LR H + H   K Y C +C K + +E +L  H   H+G
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 76.4 bits (189), Expect = 7e-18
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ--NAIHRGIR-F 58
             C  C K F +K  L  H   H G + ++C +C K +  ++ L +H+  N ++R  + F
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 59  QCNKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH 109
            C+ C   ++ + +L  H M+ H G   + CS C + F  +  L++H++K+H
Sbjct: 68  TCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 38/145 (26%)

Query: 30  YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCS 89
            +C  C K F ++ YL  H    H G +         ++                   C 
Sbjct: 8   VECPTCHKKFLSKYYLKVHNR-KHTGEK--------PFE-------------------CP 39

Query: 90  ECPKTFASRHSLKNH--ILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
           +C K +  + +L  H     ++   +   + C+ C   + +  + +LR HM  H     Y
Sbjct: 40  KCGKCYFRKENLLEHEARNCMNRSEQV--FTCSVCQ--ETFRRRMELRLHMVSHTGEMPY 95

Query: 145 HCTQCSKFYIQESDLMEHMA-VHSG 168
            C+ CS+ ++Q+ DL  HM  +HSG
Sbjct: 96  KCSSCSQQFMQKKDLQSHMIKLHSG 120

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 57.9 bits (141), Expect = 4e-11
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
           + C+ C + F  +  L  HM  H G   Y+C  C + F  +K L  H   +H G
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 46/182 (25%)

Query: 3   YYCNACSKNFSAKDTLNKHMD---IHKGVR-YQCEEC-----PKDFSTRKYLTQHQNAIH 53
              + CS+ F +++ L  H++   IH   + + C         + F  +  L  H    H
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62

Query: 54  RGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH--- 109
            G +  +C                              C K+++   +LK H+ + H   
Sbjct: 63  TGEKPHKC--------------------------TFEGCRKSYSRLENLKTHL-RSHTGE 95

Query: 110 KAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCT--QCSKFYIQESDLMEHMAVH 166
           K   Y C     SK +    D  +H    H N K Y C    C+K Y   S L +H+   
Sbjct: 96  KP--YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

Query: 167 SG 168
            G
Sbjct: 154 HG 155

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 28/167 (16%)

Query: 8   CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRA 66
              +            I +       + C + FST   L  H    H G   Q N     
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 67  YKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSK 123
            +                   C    K+F +++ L NHI ++H   K   + C      K
Sbjct: 63  EE-------------------CPREGKSFKAKYKLVNHI-RVHTGEKP--FPCPFPGCGK 100

Query: 124 DYLTKRDLRRHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSG 168
            +    +L+ H + H   K + C    C + +   SD  +HM VH+ 
Sbjct: 101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 44/159 (27%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR----------YQCEECPKDFSTRKYLTQHQNAI 52
               +C + FS    L  H+ +                +C    K F  +  L  H   +
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84

Query: 53  HRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH-- 109
           H G + F C                              C K FA   +LK H  + H  
Sbjct: 85  HTGEKPFPCPFP--------------------------GCGKIFARSENLKIH-KRTHTG 117

Query: 110 -KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
            K   ++C      + +    D ++HM +H + K    +
Sbjct: 118 EKP--FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 69.9 bits (172), Expect = 8e-15
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 39/178 (21%)

Query: 2   RYYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQCEE--CPKDFSTRKYLTQHQNAIHRGI 56
           RY C+   C   ++    L  H+  H G + + C+E  C K F++  +LT+H    H G 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 70

Query: 57  R-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAV 112
           + F C+                             C   F ++ ++K H        K  
Sbjct: 71  KNFTCDSD--------------------------GCDLRFTTKANMKKHF-NRFHNIKIC 103

Query: 113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
           +Y C+  +  K +     L+ H   H     Y C    C K +   S L  H  VH+G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 3   YYCN--ACSKNFSAKDTLNKHMDIH---KGVRYQC--EECPKDFSTRKYLTQHQNAIHRG 55
           + C+   C   F+ K  + KH +     K   Y C  E C K F     L  HQ   H  
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQ 131

Query: 56  IR-FQCN--KCFRAYKLKKDLLAHTMLEHFGIR----HPCSECPKTFASRHSLKNHILKI 108
              ++C    C + + L   L  H  + H G        CS   KT+        H+ + 
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTL---YLKHVAEC 187

Query: 109 HK 110
           H+
Sbjct: 188 HQ 189

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 63.2 bits (155), Expect = 4e-13
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C  C K+F+ K   ++HM +H G+R Y C  C K F  + +L  H   IH GI+ ++C
Sbjct: 11  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKN 103
           N C + +  +     H        + +  ++  +         +
Sbjct: 69  NICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 8e-08
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 40/140 (28%)

Query: 24  IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHF 82
              G + Y C+ C K F+ +    +H + +H G+R         Y               
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLR--------PYG-------------- 39

Query: 83  GIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHF 139
                C  C K F  +H L  H +KIH   K   Y+CN C  +K ++ +    RH+    
Sbjct: 40  -----CGVCGKKFKMKHHLVGH-MKIHTGIKP--YECNIC--AKRFMWRDSFHRHV--TS 87

Query: 140 NGKRYHCTQCSKFYIQESDL 159
             K Y   +  +   + S  
Sbjct: 88  CTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 90  ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
           +C K+F  +     H + +H   +   Y C  C   K +  K  L  HMK+H   K Y C
Sbjct: 14  QCGKSFTHKSQRDRH-MSMHLGLRP--YGCGVCG--KKFKMKHHLVGHMKIHTGIKPYEC 68

Query: 147 TQCSKFYIQESDLMEHMAVHSG 168
             C+K ++       H  V S 
Sbjct: 69  NICAKRFMWRDSFHRH--VTSC 88

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y C +C   K +  K    RHM +H   + Y C  C K +  +  L+ HM +H+G
Sbjct: 11  YPC-QCG--KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 60.5 bits (148), Expect = 2e-12
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
          + C  C K FS KD L  HM  H GV+ Y+C+ C    +    L +H   IH   R F+C
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKC 67

Query: 61 NKCFRAYKLKKDLLAH 76
            C  A +    L  H
Sbjct: 68 QICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 56.7 bits (138), Expect = 7e-11
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C  C    +   +LNKH+ IH   R ++C+ CP        LT H    H G
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTG 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 53.6 bits (130), Expect = 8e-10
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 88  CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
           C  C K F+ +  LK H+ + H   K   Y+C  C           L +H+++H + + +
Sbjct: 11  CEVCGKCFSRKDKLKTHM-RCHTGVKP--YKCKTCD--YAAADSSSLNKHLRIHSDERPF 65

Query: 145 HCTQCSKFYIQESDLMEHMAVHSG 168
            C  C       S L  H+  H+G
Sbjct: 66  KCQICPYASRNSSQLTVHLRSHTG 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 36/120 (30%)

Query: 30  YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCS 89
           ++CE C K FS +  L  H    H G+        + YK                   C 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMR-CHTGV--------KPYK-------------------CK 40

Query: 90  ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
            C    A   SL  H L+IH   +   ++C  C           L  H++ H        
Sbjct: 41  TCDYAAADSSSLNKH-LRIHSDERP--FKCQIC--PYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           ++C  C   K +  K  L+ HM+ H   K Y C  C       S L +H+ +HS 
Sbjct: 9   HKCEVCG--KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 25/108 (23%), Positives = 34/108 (31%), Gaps = 27/108 (25%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
             C  C K F     LN+H   H G + Y C  C   F  +  ++ H    H G      
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG------ 60

Query: 62  KCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
              + Y                    C  C K F+    L  HI ++H
Sbjct: 61  SVGKPYI-------------------CQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR---YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C  C   F  KD ++ H+  H G     Y C+ C K FS   +L  H   +H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 88  CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHF--NGK 142
           C  C K F   + L  H    H   K   Y C  C     +  K  +  H++ H    GK
Sbjct: 10  CEICGKIFRDVYHLNRH-KLSHSGEKP--YSCPVCG--LRFKRKDRMSYHVRSHDGSVGK 64

Query: 143 RYHCTQCSKFYIQESDLMEHM-AVHSG 168
            Y C  C K + +   L  H+  VHSG
Sbjct: 65  PYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
             C  C   K +     L RH   H   K Y C  C   + ++  +  H+  H G
Sbjct: 8   VACEICG--KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 59.4 bits (145), Expect = 5e-12
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
          + C  C +NFS  D L  H+  H G + + C+ C + F+      +H++ I   +    +
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQHILPILED 62

Query: 62 KCFRAYKLKKDLLAH 76
          K          L   
Sbjct: 63 KVEELLSKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 53.7 bits (130), Expect = 7e-10
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNA--IHRG 55
          + C+ C + F+  D   +H DI   +    ++  +  S   +L           G
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVG 86

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 12/87 (13%)

Query: 88  CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
           C  C + F+    L  HI + H   K   + C+ C   + +    + +RH  +  +    
Sbjct: 6   CRICMRNFSRSDHLTTHI-RTHTGEKP--FACDICG--RKFARSDERKRHRDIQ-HILPI 59

Query: 145 HCTQCSKFYIQESDLMEHMA---VHSG 168
              +  +   +   L   +A      G
Sbjct: 60  LEDKVEELLSKNYHLENEVARLKKLVG 86

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
           +QC  C   +++     L  H++ H   K + C  C + + +  +   H  + 
Sbjct: 4   FQCRICM--RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 62/168 (36%)

Query: 5   CNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
              C+K F     + KH+  H G R + C EC K F     L +HQ  +H G + FQC  
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTF 67

Query: 63  CFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTS 122
                                       C K F S                         
Sbjct: 68  --------------------------EGCGKRF-SLDF---------------------- 78

Query: 123 KDYLTKRDLRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHSG 168
                  +LR H+++H   + Y C    C+K + Q ++L  H+  H+ 
Sbjct: 79  -------NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG-KRYHCTQCSKFYIQESDLMEHMAVHSG 168
             C     +K +     +R+H+  H  G + + C +C K +++ S L  H  VH+G
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTG 59

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 57.4 bits (140), Expect = 3e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
          + C  C K+F    TL+ H+ IH   R Y C+ C K F  +  + +H   IH G +  +C
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60

Query: 61 NKCFRAYKLKKDLLAH 76
            C +A+    +L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C  C K F  K  + KH  IH G + ++C+ C K FS    L  H    H G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR-KHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 88  CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
           C  C K+F    +L  H L IH   +   Y C  C   K +  K D+++H  +H   K +
Sbjct: 4   CKICGKSFKRSSTLSTH-LLIHSDTRP--YPCQYCG--KRFHQKSDMKKHTFIHTGEKPH 58

Query: 145 HCTQCSKFYIQESDLMEHMAVHSG 168
            C  C K + Q S+L+ H   H+G
Sbjct: 59  KCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 30  YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIR-HP 87
           + C+ C K F     L+ H   IH   R + C  C + +  K D+  HT + H G + H 
Sbjct: 2   FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59

Query: 88  CSECPKTFASRHSLKNHILKIH 109
           C  C K F+   +L  H  + H
Sbjct: 60  CQVCGKAFSQSSNLITH-SRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           + C  C   K +     L  H+ +H + + Y C  C K + Q+SD+ +H  +H+G
Sbjct: 2   FDCKICG--KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 3   YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQNAIHRGIR 57
           + C    C+K +     L  H   H G + YQC+  +C + FS    L +HQ   H G++
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65

Query: 58  -FQCNKCFRAYKLKKDLLAHTMLEHFGIR-HPCS--ECPKTFASRHSLKNHILKIH 109
            FQC  C R +     L  H    H G +   C    C K FA    L  H   +H
Sbjct: 66  PFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 40/145 (27%)

Query: 30  YQCEE--CPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRH 86
           + C    C K +    +L  H    H G + +QC+                         
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDF------------------------ 41

Query: 87  PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
              +C + F+    LK H  + H   K   +QC  C   + +     L+ H + H   K 
Sbjct: 42  --KDCERRFSRSDQLKRHQ-RRHTGVKP--FQCKTCQ--RKFSRSDHLKTHTRTHTGEKP 94

Query: 144 YHC--TQCSKFYIQESDLMEHMAVH 166
           + C    C K + +  +L+ H  +H
Sbjct: 95  FSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 88  CSE--CPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK 142
           C+   C K +     L+ H  + H   K   YQC+     + +     L+RH + H   K
Sbjct: 9   CAYPGCNKRYFKLSHLQMHS-RKHTGEKP--YQCDFKDCERRFSRSDQLKRHQRRHTGVK 65

Query: 143 RYHCTQCSKFYIQESDLMEHMAVHSG 168
            + C  C + + +   L  H   H+G
Sbjct: 66  PFQCKTCQRKFSRSDHLKTHTRTHTG 91

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSG 168
           + C     +K Y     L+ H + H   K Y C    C + + +   L  H   H+G
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 57.4 bits (140), Expect = 4e-11
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
          + C  C ++F+    L  H   H   R Y C+ C K F  + +L  H+  IH   + F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKC 76

Query: 61 NKCFRAYKLKKDLLAH 76
           +C + +   + L  H
Sbjct: 77 QECGKGFCQSRTLAVH 92

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 54.4 bits (132), Expect = 7e-10
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3   YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
           Y C+ C K F  +D L  H  IH   + ++C+EC K F   + L  H+  +H        
Sbjct: 46  YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104

Query: 61  N 61
            
Sbjct: 105 A 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 53.6 bits (130), Expect = 9e-10
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 14  AKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKK 71
                +      K  + + C+ C + F+    L  H+   H   R + C+ C +A++ + 
Sbjct: 1   GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQD 59

Query: 72  DLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQCN 117
            L  H  + H   +   C EC K F    +L  H   +H    +      
Sbjct: 60  HLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSS--PTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           + C  C   + +    +L  H + H + + Y C  C K + ++  L +H  +HS 
Sbjct: 18  FICKFCG--RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 56.7 bits (138), Expect = 6e-11
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 3  YYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
          Y C    C + FS   +L +H+ IH G + +QC  C ++FS   +LT H    H G + F
Sbjct: 5  YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63

Query: 59 QCNKCFRAYKLKKDLLAH 76
           C+ C R +    +   H
Sbjct: 64 ACDICGRKFARSDERKRH 81

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          + C  C +NFS  D L  H+  H G + + C+ C + F+      +H   IH  
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 53.2 bits (129), Expect = 9e-10
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 87  PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
           P   C + F+   SL  HI +IH   K   +QC  C   +++     L  H++ H   K 
Sbjct: 8   PVESCDRRFSQSGSLTRHI-RIHTGQKP--FQCRICM--RNFSRSDHLTTHIRTHTGEKP 62

Query: 144 YHCTQCSKFYIQESDLMEHMAVHSG 168
           + C  C + + +  +   H  +H  
Sbjct: 63  FACDICGRKFARSDERKRHTKIHLR 87

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.3 bits (136), Expect = 6e-11
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR----YQCEECPKDFSTRKYLTQHQNAIHRGIRF 58
            C  C      K +LN H   H        + CE C K F     +  H++  H  +  
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 59 QCNKC 63
             + 
Sbjct: 68 APQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 86  HPCSECPKTFASRHSLKNHILKIHKAVL----YQCNECSTSKDYLTKRDLRRHMKLHFNG 141
             C  C  T   + SL  H  + H   +    + C  C   K +     +  H       
Sbjct: 8   LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCG--KRFEKPDSVAAHRSKSHPA 64

Query: 142 KRYHCTQCSK 151
                 + S 
Sbjct: 65  LLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG---KRYHCTQCSKFYIQESDLMEHMAVH 166
            QC  C        K  L  H + H       R+ C  C K + +   +  H +  
Sbjct: 8   LQCEICG--FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 27/92 (29%)

Query: 30  YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIR-HPC 88
            QCE C      +  L  HQ                          H   E       PC
Sbjct: 8   LQCEICGFTCRQKASLNWHQRK------------------------HA--ETVAALRFPC 41

Query: 89  SECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
             C K F    S+  H  K H A+L    E S
Sbjct: 42  EFCGKRFEKPDSVAAHRSKSHPALLLAPQESS 73

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C  C K FS    L +H  +H G + Y+C EC K FS    L  HQ  IH  
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTS 67

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 18 LNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLA 75
           +    IH G + Y C EC K FS    L QHQ  +H G + ++C +C +A+     L+ 
Sbjct: 2  SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60

Query: 76 H 76
          H
Sbjct: 61 H 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y C EC   K +     L +H ++H   K Y C +C K + Q S L+ H  +H+ 
Sbjct: 15  YGCVECG--KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR---YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C  C   F+   T+  H+          + C  C    + +  L  H    H  
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH--FNGKRYHCTQCSKFYIQESDLMEHM-AVHSG 168
           Y+C  C     +     ++ H+      N  ++HC  C     ++SDL  H+   HS 
Sbjct: 16  YECYICH--ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 17 TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR---FQCNKCFRAYKLKKD 72
          +       H G + Y+C  C   F+    +  H            F C  C      K D
Sbjct: 2  SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60

Query: 73 LLAHTMLEHFG 83
          L  H   +H  
Sbjct: 61 LGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 7/38 (18%), Positives = 11/38 (28%)

Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
                + H   K Y C  C   + Q   +  H+     
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 53.2 bits (129), Expect = 7e-10
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C+ C  +F  K  L  H  +H G + Y+C  C   F+    L  H   IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y+C+ C     +  K +L  H  +H   K Y C  C   + + ++L  H  +HSG
Sbjct: 18  YKCDRCQ--ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 30/93 (32%)

Query: 18  LNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH 76
            + H  +    + Y+C+ C   F  +  L  H+  +H G +         Y+        
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEK--------PYR-------- 47

Query: 77  TMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
                      C+ C   F    +LK H  +IH
Sbjct: 48  -----------CNICGAQFNRPANLKTH-TRIH 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 52.9 bits (128), Expect = 8e-10
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
            C+ CS + S+K  L  H  IH   R ++C  C  D      L++H      G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
            +C+ECS      +K  LR H ++H   + + C  CS    Q S+L +HM    G
Sbjct: 10  EKCSECS--YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 53.3 bits (129), Expect = 8e-10
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-----YQCEECPKDFSTRKYLTQHQNAIHRGIR 57
          Y C+ C K F  K  L+ H   +         + C +C K F+ R  + +H +    G  
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPD 74

Query: 58 -FQCNKC 63
            +    
Sbjct: 75 GVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 31/107 (28%)

Query: 17  TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA 75
           +       H G + Y C  C K F  ++ L  H    +    F       A+        
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFV----PAAFV------- 49

Query: 76  HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNEC 119
                       CS+C KTF  R+++  H             +    
Sbjct: 50  ------------CSKCGKTFTRRNTMARH-ADNCAGPDG--VEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH----FNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y C+ C   K +  K+ L  H K +    F    + C++C K + + + +  H    +G
Sbjct: 16  YACSHCD--KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 12/71 (16%)

Query: 88  CSECPKTFASRHSLKNHILKIH-------KAVLYQCNECSTSKDYLTKRDLRRHMKLHFN 140
           CS C KTF  +  L  H  K +        A  + C++C   K +  +  + RH      
Sbjct: 18  CSHCDKTFRQKQLLDMH-FKRYHDPNFVPAA--FVCSKCG--KTFTRRNTMARHADNCAG 72

Query: 141 GKRYHCTQCSK 151
                      
Sbjct: 73  PDGVEGENSGP 83

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDF 39
          + C+ C K F+ ++T+ +H D   G    + E      
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
                + H   K Y C+ C K + Q+  L  H   +  
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          Y C+ C K+FS    L+KH   H G + Y+C+EC K F  R +L  H   +H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTG 71

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 29/89 (32%)

Query: 17  TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA 75
           +  +     +  R Y+C+EC K FS    L++H+   H G +         YK       
Sbjct: 5   SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEK--------PYK------- 48

Query: 76  HTMLEHFGIRHPCSECPKTFASRHSLKNH 104
                       C EC K F  R  L  H
Sbjct: 49  ------------CDECGKAFIQRSHLIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           Y+C+EC   K +    DL +H + H   K Y C +C K +IQ S L+ H  VH+G
Sbjct: 19  YKCDECG--KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 3  YYCNACSKNFSAKDTLNKHM--DIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGI 56
          Y C  CS+ ++      +H      + V+ Y C  C K+F+ +  +T H   I   I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK-IIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 114 YQCNECSTSKDYLTKRDLRRHM--KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV 169
           Y+C  CS  + Y    +  RH       N K Y C  C K + ++ ++  H+ +   +
Sbjct: 11  YRCKVCS--RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 49.8 bits (120), Expect = 9e-09
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          + C  C++ F+ ++ L +H   H   + Y C  C + F+ R  L +H   IH G
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFG 83
          + CE C + F+ +++L +H    H   + + C  C RA+  +  L+ H    H G
Sbjct: 3  FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSG 168
           + C  C+  + +  +  L+RH + H N K Y C  C++ + +   L+ H   +HSG
Sbjct: 3   FVCEVCT--RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 3  YYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR 57
          Y C+   C K F   + L  H   H     Y+C  E C K FS    L +H+  +H G  
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60

Query: 58 -FQCNKCFRAYKLKKDLLAHTMLEH 81
            + + C    K     L H    H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 87  PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
               C K F   + LK H    H       Y+C      K +     L+RH K+H     
Sbjct: 5   HFENCGKAFKKHNQLKVH-QFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 144 YHCTQCSKFYIQESDLMEHM 163
                CS      +  ++H+
Sbjct: 62  KKDDSCSFVGKTWTLYLKHV 81

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 87  PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
               C + F++R  L +H    H   K+  + C E +  K +  K+ L+ HMKLH + + 
Sbjct: 11  DFPGCGRIFSNRQYLNHHKKYQHIHQKS--FSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68

Query: 144 YHCTQCSK 151
           Y C     
Sbjct: 69  YICEFSGP 76

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 3  YYCNA--CSKNFSAKDTLNKHMDI-HKGVR-YQCEE--CPKDFSTRKYLTQHQNAIHRGI 56
            C+   C + FS +  LN H    H   + + C E  C K F+ +K+L +H   +H   
Sbjct: 8  MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDT 66

Query: 57 R-FQCNKC 63
          R + C   
Sbjct: 67 RDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 30 YQC--EECPKDFSTRKYLTQHQNAIHRGIR-FQCN--KCFRAYKLKKDLLAHTMLEHFGI 84
            C    C + FS R+YL  H+   H   + F C    C +++  KK L  H M  H   
Sbjct: 8  MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLHSDT 66

Query: 85 R-HPCSECPKTF 95
          R + C     + 
Sbjct: 67 RDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 3  YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDF 39
          + C   AC K+F+ K  L +HM +H   R Y CE      
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 1  MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQC 60
            Y C  C+   S+      H  + +     C  C   F + +   +H++      +  C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESK-CEYKKLTC 72

Query: 61 NKCFRAYKLKKDLLAHTMLEH 81
           +C R +K    +  H +  H
Sbjct: 73 LECMRTFKSSFSIWRHQVEVH 93

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 18  LNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAH 76
            +    +     YQC  C    S+      H+           C+  F + +LK++  + 
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK 64

Query: 77  TMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
              +       C EC +TF S  S+  H +++H
Sbjct: 65  CEYKKLT----CLECMRTFKSSFSIWRHQVEVH 93

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRK 171
           Y C EC           L++H++ H + + YHCT C+  +  + +L +HM   +  +K
Sbjct: 2   YICEECG--IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 2  RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
          +Y C  C         L KH+  H  VR Y C  C   F T+  LT+H 
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 85  RHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG 141
               + C KT+     LK H L+ H   K   Y C+       +    +L RH + H   
Sbjct: 7   TCDYAGCGKTYTKSSHLKAH-LRTHTGEKP--YHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 142 KRYHCTQCSKFYIQESDLMEHMAVH 166
           + + C +C + + +   L  HM  H
Sbjct: 64  RPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 3  YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
          Y+C+   C   F+  D L +H   H G R +QC++C + FS   +L  H 
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 2  RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR- 57
                C K ++    L  H+  H G + Y C  + C   F+    LT+H    H G R 
Sbjct: 7  TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP 65

Query: 58 FQCNKCFRA 66
          FQC KC RA
Sbjct: 66 FQCQKCDRA 74

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 3  YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
          Y C   +C + FS  D L +H+ IH G + +QC  C ++FS   +LT H 
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 3  YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
          Y C    C   F+  D L +H   H G + +QC  C + FS   +L  H 
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 86  HPCS--ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFN 140
           H C    C K +     LK H L+ H   K   Y+C        +    +L RH + H  
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAH-LRTHTGEKP--YKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 141 GKRYHCTQCSKFYIQESDLMEHMAVH 166
            K + C  C++ + +   L  HM  H
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 18/106 (16%)

Query: 12  FSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR------FQCNKCF- 64
             +     +   IH         C K ++   +L  H    H G +        C+  F 
Sbjct: 3   SGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFA 58

Query: 65  RAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH 109
           R+ +L +    HT     G +   C  C ++F+    L  H+ K H
Sbjct: 59  RSDELTRHYRKHT-----GAKPFQCGVCNRSFSRSDHLALHM-KRH 98

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 3  YYCNACSKNFSAKDTLNKHM-DIHKGVR-YQCEECPKDFST 41
          Y C +C K FS  D LN H+  +H   R ++C+      S+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKC 63
          Y C+ C K FS   +L  H   +H   R  +C   
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 86  HPCSECPKTFASRHSLKNHILKIH----KAVLYQC--NECSTSKDYLTKRD-LRRHMKLH 138
            P   C +TF++ H L  H+   H    +   + C   EC         +  L  H+++H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 139 FNGKRYHCT 147
              K    +
Sbjct: 86  TGEKSGPSS 94

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 21/77 (27%)

Query: 30  YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPC 88
              + C + FST   L  H    H G      + C+                       C
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------------EC 65

Query: 89  SECPKTFASRHSLKNHI 105
               K+F +++ L NHI
Sbjct: 66  PREGKSFKAKYKLVNHI 82

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 76  HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH--KAVLYQCNECSTSKDYLT-KRDLR 132
           +  +     +  C +C   + +   L  H+ +    +   ++ +  +  +     KR L 
Sbjct: 10  YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69

Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA 164
                    K   C  C   +    DL  HM 
Sbjct: 70  EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 22/109 (20%)

Query: 1   MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQC 60
            ++ C  CS  +     L  HM+     R    E   +   R    + ++ +    +   
Sbjct: 18  SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77

Query: 61  NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
            K  +                      C  C  +F S   L  H++K  
Sbjct: 78  QKVLK----------------------CMYCGHSFESLQDLSVHMIKTK 104

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + Y+C EC K F     L +H    H G +    +
Sbjct: 3  SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C EC K F    +L +H+  IH G R    + 
Sbjct: 2  SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSS 45

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C EC K FS    L+QHQ  IH G +    + 
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSS 45

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+CE+C K ++++  L  HQ  +H G R    + 
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSS 45

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + ++C EC K ++ R +LTQHQ  +H G +    + 
Sbjct: 2  SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSS 45

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G R Y+C EC K F  +  L+ HQ  IHRG +    + 
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS 45

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C +C K FS R  LT HQ AIH G +    + 
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPSS 45

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + Y+C EC K F      TQHQ  +H G R    + 
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSS 45

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 GV+ Y C EC K FS    LT HQ  IH G +    + 
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGPSS 45

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 9e-05
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + Y+C+ C K FS    LTQHQ  +H G +    + 
Sbjct: 3  SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPSS 45

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C EC K +  R  L  HQ  +H G +    + 
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGPSS 45

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + ++C EC K FS    L  HQ  IH G      + 
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSS 45

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 20  KHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML 79
           K++  HKG+        ++      LT  Q  + R I        +    +   L   + 
Sbjct: 12  KYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLD-ESSYLYRLLA 68

Query: 80  EHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHF 139
                +  C  C   F+S  SLK HI          C  C   K++ +      H+    
Sbjct: 69  SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVC--KKEFTSTDSALDHVCKKH 124

Query: 140 NG 141
           N 
Sbjct: 125 NI 126

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 2   RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR 57
           ++ C  C   FS+  +L +H+   +     C  C K+F++      H    H    
Sbjct: 74  QFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNICV 128

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + Y C  C K F    +L QH   +H  
Sbjct: 2  SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQ 37

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                   + Y C EC K F+   +LT+HQ  IH  
Sbjct: 2  SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTR 37

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G R ++C EC K F    +L QHQ  IH G +    + 
Sbjct: 3  SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSS 45

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                  + Y+CE+C K ++ R  L  HQ  +H G +    + 
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGPSS 45

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + Y+C EC K F     LT HQ  IH G +    + 
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPSS 45

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + YQC EC K FS    L +HQ  +H G +    +
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPS 44

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C+ C K F    +L QH + +H G R    +
Sbjct: 2  SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPS 44

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                +G + YQC EC K FS    LTQH    H  
Sbjct: 2  SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTR 37

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C EC K F  R  L  HQ A H G +    + 
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPSS 45

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G R Y+C EC K F+ +  L  HQ  IH G +    +
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G R ++C +C K F       QH+  IH G
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTG 37

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + Y CEEC K F     L +HQ  IH G
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTG 37

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + ++C EC K F+ +  L+ HQ  IH G +    + 
Sbjct: 3  SGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSS 45

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C+EC K FS   +L QHQ  +H G +    +
Sbjct: 2  SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C  C K FS R+ L+ HQ  IH G +    +
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C EC K FS    L +HQ  IH G +    +
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + ++C EC K FS    L  HQ  IH G
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTG 37

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + Y+C EC K F+   +L +H+  IH G
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTG 37

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + Y C+EC K FS    L +H+  +H G +    +
Sbjct: 3  SGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + +QCEEC K F+   +L  HQ  +H G +    +
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C+ C K F+ + +L QHQ   H G +    +
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + ++C EC K FS R  L  H   +H G
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTG 37

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G++ Y C EC K F ++ YL  H    H G
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTG 37

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + Y+C +C K F  +  L  HQ  IH G
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTG 37

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                   + +QC EC + F+ + +L QHQ  IH G
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTG 37

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                 G + Y+C EC K F    +L +HQ  IH G +    + 
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSS 45

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + + C +C K FS    L QH+  IH G
Sbjct: 2  SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTG 37

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C EC K F+   +L  HQ  IH G++    +
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 GV+ Y C +C K FS +  L  HQ   H G++    +
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + Y C EC K FS++ YL  H    H G
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSG 37

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + Y+C EC K F+   +LT H   IH G +    +
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G   Y+C EC K FS +  L  HQ   H G +    +
Sbjct: 3  SGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + Y C EC K F+ R  L +HQ  IH  
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTK 37

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G R Y C EC K+F    +L +H    H  
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFR 37

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y C+ C K F     L +HQ  IH G +    +
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                 G + ++C+EC K F    +L  H   IH G
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTG 37

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 5e-04
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + Y+C EC K F+ +  LTQHQ  IH G +    +
Sbjct: 3  SGSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 6e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + ++C EC K F+T+  L  HQ   H G
Sbjct: 3  SGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTG 37

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + Y+C EC K F    YL++HQ  IH G +    + 
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSS 45

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G R Y+C EC K F T+  L  H+   H G +    +
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + ++C EC K F+    LT HQ  IH G +    +
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                GV  Y+C +C K FS +  L  HQ  +H   +    + 
Sbjct: 3  SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGPSS 45

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + Y+C +C K F+ +  L  HQ   H G R    + 
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSS 45

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G + Y+C EC K F+   +L +H+  IH G +    +
Sbjct: 3  SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C EC K F+   +L +H+  +H G +    +
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPS 44

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
          + C  C K FS++ YL  HQ   H   +    +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPS 42

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G + ++CEEC K F+    L  HQ  +H G +    + 
Sbjct: 3  SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSS 45

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
                G R Y C  C K F+ R  L +HQ  IH G +    + 
Sbjct: 3  SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS 45

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + Y+CEEC K F  R+ L  H   +H G
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRDLYTHH-MVHTG 37

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + Y+C EC K F+T+  L  HQ   H G
Sbjct: 3  SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTG 37

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                 G + Y+C  C K F+ +  L  HQ  IH G +    +
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 9e-04
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
                G + ++C+ C K F  R  L +H   +H  
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTA 37

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
                G   + C EC K F+ +  L  HQ  IH G R    +
Sbjct: 3  SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.78
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.74
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.67
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.62
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.54
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.52
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.51
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.5
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.49
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.48
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.47
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.47
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.44
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.43
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.42
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.42
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.41
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.41
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.36
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.35
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.35
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.35
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.32
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.25
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.25
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.23
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.23
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.19
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.18
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.18
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.14
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.14
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.13
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.13
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.11
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.09
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.07
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.06
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.04
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.03
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.01
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.0
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.0
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.97
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.93
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.92
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.89
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.88
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.84
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.83
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.83
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.82
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.82
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.82
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.8
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.79
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.75
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.75
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.74
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.72
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.72
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.71
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.67
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.67
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.62
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.61
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.58
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.5
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.46
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.43
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.41
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.39
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.39
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.39
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.39
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.39
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.39
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.38
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.37
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.36
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.32
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.32
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.65
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.29
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.28
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.28
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.28
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.26
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.26
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.25
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.24
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.22
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.22
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.21
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.21
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.19
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.18
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.18
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.18
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.17
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.46
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.16
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.16
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.15
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.13
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.42
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.11
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.02
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.92
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.9
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.87
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.81
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.76
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.66
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.51
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.66
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.31
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.11
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.96
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.62
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.53
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.95
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.47
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.9
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	93.85
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.54
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	90.54
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.32
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	89.74
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.82
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.82
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	86.5
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.45
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	86.07
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.03
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	85.49
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	85.16
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	84.86
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.37
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.21
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	83.08
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	82.37
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	81.48
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	80.88

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=8.7e-40  Score=251.19  Aligned_cols=179  Identities=26%  Similarity=0.440  Sum_probs=103.3

Q ss_pred             HHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCc
Q psy11318         16 DTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKT   94 (263)
Q Consensus        16 ~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~   94 (263)
                      ..|..|++.+.+ .+|.|++|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.|+++++|.|+.|++.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            456666666655 3666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318         95 FASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus        95 f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |.+...|..|++.|+++++|.|..|+  +.|.+...|..|+++|+++++|.|..|++.|.+...|..|+++|+++++|.|
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  164 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECG--KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC  164 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTC--CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEEC
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCC--CccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeEC
Confidence            66666666666666666666666666  6666666666666666666666666666666666666666666666666666


Q ss_pred             CCCcccccccceeeeccCCCcc
Q psy11318        175 GPIKTEQTFGVRELRHVGFPMK  196 (263)
Q Consensus       175 ~~c~~~~~~~~~l~~H~~~~~~  196 (263)
                      ..|++.|.+...|..|+++|..
T Consensus       165 ~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          165 PECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             TTTCCEESSHHHHHHHHTTC--
T ss_pred             CCCCCccCCHHHHHHHHHhcCC
Confidence            6666666666666666666554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.2e-39  Score=248.90  Aligned_cols=170  Identities=31%  Similarity=0.607  Sum_probs=148.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML   79 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (263)
                      ++|.|++|++.|.+...|..|++.|++ .+|.|++|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.
T Consensus        20 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   99 (190)
T 2i13_A           20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT   99 (190)
T ss_dssp             -----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHh
Confidence            579999999999999999999999988 5899999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHH
Q psy11318         80 EHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDL  159 (263)
Q Consensus        80 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  159 (263)
                      |+++++|.|+.|++.|.+...|..|++.|+++++|.|++|+  +.|.+...|..|+++|+++++|.|..|++.|.+...|
T Consensus       100 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L  177 (190)
T 2i13_A          100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG--KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL  177 (190)
T ss_dssp             HHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC--CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             cCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCC--cccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHH
Confidence            99999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCC
Q psy11318        160 MEHMAVHSGVRKL  172 (263)
Q Consensus       160 ~~H~~~h~~~~~~  172 (263)
                      .+|+++|++++||
T Consensus       178 ~~H~~~H~~~k~~  190 (190)
T 2i13_A          178 NVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHTTC------
T ss_pred             HHHHHhcCCCCCC
Confidence            9999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=4.7e-34  Score=219.18  Aligned_cols=163  Identities=27%  Similarity=0.509  Sum_probs=129.6

Q ss_pred             CCccc--cccccccCChHHHHHHHHhhCC-ccccc--CCCccccCChhHHHHHHHHhcCCCceecc--cccccccchHHH
Q psy11318          1 MRYYC--NACSKNFSAKDTLNKHMDIHKG-VRYQC--EECPKDFSTRKYLTQHQNAIHRGIRFQCN--KCFRAYKLKKDL   73 (263)
Q Consensus         1 ~~y~C--~~C~~~f~~~~~L~~H~~~h~~-~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l   73 (263)
                      ++|.|  +.|++.|.+...|..|+++|++ .+|.|  ++|++.|.+...|..|+++|+++.+|.|.  .|++.|.+...|
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   90 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM   90 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHH
Confidence            46788  6788888888888888888876 47888  77888888888888888888888888888  788888888888


Q ss_pred             HHHHHHhc--CCCcccC--CcCCCcCCCHHHHHHHHHHhcCCccccCCC--CCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318         74 LAHTMLEH--FGIRHPC--SECPKTFASRHSLKNHILKIHKAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus        74 ~~H~~~~~--~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      ..|++..|  .+++|.|  +.|++.|.+...|..|++.|+++++|.|++  |+  ++|.+...|..|+++|++   |.|.
T Consensus        91 ~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~--k~F~~~~~L~~H~~~H~~---~~C~  165 (190)
T 1tf6_A           91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD--KRFSLPSRLKRHEKVHAG---YPCK  165 (190)
T ss_dssp             HHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCC--CBCSSHHHHHHHHTSSCS---CCCC
T ss_pred             HHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCC--chhcCHHHHHHHHHHhCC---CcCC
Confidence            88885444  3467888  778888888888888888888888888876  88  888888888888887776   7777


Q ss_pred             c---chhhhcChHHHHHHHhhccC
Q psy11318        148 Q---CSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       148 ~---C~~~f~~~~~l~~H~~~h~~  168 (263)
                      .   |++.|.+...|.+|+++|++
T Consensus       166 ~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          166 KDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             STTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCcCCCccccHHHHHHHHHhhcC
Confidence            7   88888888888888887775

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=8.7e-33  Score=212.11  Aligned_cols=164  Identities=23%  Similarity=0.442  Sum_probs=154.8

Q ss_pred             ccccc--CCCccccCChhHHHHHHHHhcCCCceec--ccccccccchHHHHHHHHHhcCCCcccCC--cCCCcCCCHHHH
Q psy11318         28 VRYQC--EECPKDFSTRKYLTQHQNAIHRGIRFQC--NKCFRAYKLKKDLLAHTMLEHFGIRHPCS--ECPKTFASRHSL  101 (263)
Q Consensus        28 ~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l  101 (263)
                      .+|.|  +.|++.|.+...|..|++.|+++.+|.|  ..|++.|.+...|..|++.|+++++|.|.  .|++.|.+...|
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   90 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM   90 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHH
Confidence            48999  6899999999999999999999999999  88999999999999999999999999999  899999999999


Q ss_pred             HHHHHHhc--CCccccC--CCCCCCcccCCHHHHHHHHHHhCCCCCccCCc--chhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        102 KNHILKIH--KAVLYQC--NECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       102 ~~H~~~~~--~~~~~~C--~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      ..|++..|  +.++|.|  ..|+  +.|.+...|..|+++|+++++|.|+.  |++.|.+.+.|.+|+++|++   |.|.
T Consensus        91 ~~H~~~~h~~~~~~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~  165 (190)
T 1tf6_A           91 KKHFNRFHNIKICVYVCHFENCG--KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK  165 (190)
T ss_dssp             HHHHHTTSSTTTSCCEECSSSSC--EECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCC
T ss_pred             HHHHHHhcCCCcceeeCCCCCCc--cccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCC
Confidence            99995554  5789999  8899  99999999999999999999999988  99999999999999999998   8999


Q ss_pred             C---CcccccccceeeeccCCCcc
Q psy11318        176 P---IKTEQTFGVRELRHVGFPMK  196 (263)
Q Consensus       176 ~---c~~~~~~~~~l~~H~~~~~~  196 (263)
                      .   |++.|.+...|..|+++|..
T Consensus       166 ~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          166 KDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             STTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCcCCCccccHHHHHHHHHhhcC
Confidence            9   99999999999999998753

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=2.4e-28  Score=181.13  Aligned_cols=142  Identities=27%  Similarity=0.543  Sum_probs=98.1

Q ss_pred             CccccccccccCChHHHHHHHH---hhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMD---IHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT   77 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~---~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   77 (263)
                      +|.|+.|++.|.+...|..|++   +|.+ .+|.|.+|+                       |..|++.|.+...|..|+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~-----------------------C~~c~~~f~~~~~l~~H~   59 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-----------------------CSRELRPFKAQYMLVVHM   59 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT-----------------------CTTTTCCCSSHHHHHHHT
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC-----------------------ccchhhhhhhHHHHHHHH
Confidence            3555555555555555555555   2333 245554432                       334457777777777777


Q ss_pred             HHhcCCCcccCCc--CCCcCCCHHHHHHHHHHhcCCccccCCC--CCCCcccCCHHHHHHHH-HHhCCCCCccCCc--ch
Q psy11318         78 MLEHFGIRHPCSE--CPKTFASRHSLKNHILKIHKAVLYQCNE--CSTSKDYLTKRDLRRHM-KLHFNGKRYHCTQ--CS  150 (263)
Q Consensus        78 ~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~  150 (263)
                      +.|+++++|.|++  |++.|.+...|..|++.|+++++|.|++  |+  +.|.+...|..|+ +.|.++++|.|..  |+
T Consensus        60 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~--~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  137 (155)
T 2gli_A           60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS--KAFSNASDRAKHQNRTHSNEKPYVCKLPGCT  137 (155)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCC--CEESSSSTTHHHHHHTTCSCCCEECCSTTTC
T ss_pred             HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCC--CccCCHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            7777777777764  7777777777777777777777778877  77  7788888888887 6777777888877  88


Q ss_pred             hhhcChHHHHHHHhhccC
Q psy11318        151 KFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       151 ~~f~~~~~l~~H~~~h~~  168 (263)
                      +.|.+.+.|.+|+++|+|
T Consensus       138 ~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          138 KRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CEESSHHHHHHHHHHSCC
T ss_pred             cccCCHHHHHHHHHhhcC
Confidence            888888888888877764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.3e-27  Score=177.25  Aligned_cols=110  Identities=24%  Similarity=0.434  Sum_probs=72.9

Q ss_pred             CCcccccc-----ccccCChHHHHHHHHhhCC-cccccCC--CccccCChhHHHHHHHHhcCCCceeccc--ccccccch
Q psy11318          1 MRYYCNAC-----SKNFSAKDTLNKHMDIHKG-VRYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCNK--CFRAYKLK   70 (263)
Q Consensus         1 ~~y~C~~C-----~~~f~~~~~L~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~   70 (263)
                      ++|.|+.|     ++.|.+...|..|+++|++ .+|.|.+  |++.|.+...|..|++.|+++.+|.|.+  |++.|.+.
T Consensus        33 ~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~  112 (155)
T 2gli_A           33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA  112 (155)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSS
T ss_pred             cceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCH
Confidence            35776643     3667777777777777665 3677764  7777777777777777766666677766  77777666


Q ss_pred             HHHHHHH-HHhcCCCcccCCc--CCCcCCCHHHHHHHHHHhcC
Q psy11318         71 KDLLAHT-MLEHFGIRHPCSE--CPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        71 ~~l~~H~-~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  110 (263)
                      ..|..|+ +.|.++++|.|+.  |++.|.+...|..|++.|+|
T Consensus       113 ~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             STTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            6666666 4555556666665  66666666666666666553

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=6.8e-25  Score=162.50  Aligned_cols=117  Identities=25%  Similarity=0.414  Sum_probs=68.4

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCC-Cc--------eecccccccccchHHHHHHHHHhcCCCcccCCc--CCCcCCC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRG-IR--------FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSE--CPKTFAS   97 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~   97 (263)
                      .|.|.+|++.|.+...|..|++.+|.. .+        |.|..|++.|.+...|..|++.|+++++|.|.+  |++.|.+
T Consensus        25 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             SSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESC
T ss_pred             ccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCC
Confidence            455555555555555555555542222 21        456666666666666666665555556666655  6666666


Q ss_pred             HHHHHHHHHHhcCCccccCCC--CCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318         98 RHSLKNHILKIHKAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus        98 ~~~l~~H~~~~~~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      ...|..|++.|+++++|.|.+  |+  +.|.+...|..|+++|+++++|.|.
T Consensus       105 ~~~L~~H~~~h~~~~~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          105 SENLKIHKRTHTGEKPFKCEFEGCD--RRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HHHHHHHHTTTCSSCSBCCSSTTCC--CCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             HHHHHHHHHhhCCCCCccCCCCCCC--CccCCHHHHHHHHHHhcCCCCCCCC
Confidence            666666666666666666664  66  6666666666666666666666653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=9e-25  Score=155.72  Aligned_cols=113  Identities=30%  Similarity=0.480  Sum_probs=71.7

Q ss_pred             CCcccc--ccccccCChHHHHHHHHhhCCcccccCCCccccCChhHHHHHHHHhcCCCceeccc--ccccccchHHHHHH
Q psy11318          1 MRYYCN--ACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNK--CFRAYKLKKDLLAH   76 (263)
Q Consensus         1 ~~y~C~--~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H   76 (263)
                      ++|.|+  .|++.|.+...|..|+++|...+|.|.+|++.|.+...|..|++.|+++.+|.|..  |++.|.+...|..|
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H   83 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH   83 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHH
Confidence            356676  67777777777777776664456777777777777777777766666666666654  66666666666666


Q ss_pred             HHHhcCCCcccCC--cCCCcCCCHHHHHHHHHHhcCCcc
Q psy11318         77 TMLEHFGIRHPCS--ECPKTFASRHSLKNHILKIHKAVL  113 (263)
Q Consensus        77 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~  113 (263)
                      ++.|+++++|.|+  .|++.|.+...|..|++.|+++++
T Consensus        84 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             HHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             HHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            6666666666664  366666666666666666665554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=160.22  Aligned_cols=120  Identities=24%  Similarity=0.465  Sum_probs=111.7

Q ss_pred             CCCceecccccccccchHHHHHHHHHhcCC-Cc--------ccCCcCCCcCCCHHHHHHHHHHhcCCccccCCC--CCCC
Q psy11318         54 RGIRFQCNKCFRAYKLKKDLLAHTMLEHFG-IR--------HPCSECPKTFASRHSLKNHILKIHKAVLYQCNE--CSTS  122 (263)
Q Consensus        54 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~  122 (263)
                      ....|.|..|++.|.+...|..|++.+|.+ .+        |.|.+|++.|.+...|..|++.|+++++|.|.+  |+  
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~--   99 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG--   99 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC--
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC--
Confidence            456699999999999999999999985554 33        799999999999999999999999999999998  99  


Q ss_pred             cccCCHHHHHHHHHHhCCCCCccCCc--chhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        123 KDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       123 ~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      +.|.+...|..|+++|+++++|.|.+  |++.|.+...|.+|+++|+++++|.|.
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999997  999999999999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.7e-24  Score=152.46  Aligned_cols=106  Identities=31%  Similarity=0.641  Sum_probs=59.6

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHH---hcCCCcccCCcCCCcCCCHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML---EHFGIRHPCSECPKTFASRHSLKNHI  105 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~C~~C~~~f~~~~~l~~H~  105 (263)
                      +|.|++|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|+..   +..+++|.|++|++.|.+...|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   86 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM   86 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555543   23345556666666666666666666


Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHH
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMK  136 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~  136 (263)
                      +.|+++++|.|.+|+  +.|.+...|..|++
T Consensus        87 ~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           87 VSHTGEMPYKCSSCS--QQFMQKKDLQSHMI  115 (124)
T ss_dssp             HHHSSSCSEECSSSC--CEESSHHHHHHHHH
T ss_pred             HHcCCCCCccCCCcc--chhCCHHHHHHHHH
Confidence            666666666666666  56666666666655

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=6.7e-24  Score=151.10  Aligned_cols=114  Identities=25%  Similarity=0.528  Sum_probs=98.4

Q ss_pred             cCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHH---hcCCccccCCCCCCCcccCCHH
Q psy11318         53 HRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILK---IHKAVLYQCNECSTSKDYLTKR  129 (263)
Q Consensus        53 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~C~~C~~~~~f~~~~  129 (263)
                      .++.+|.|.+|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.   +.++++|.|.+|+  +.|.+..
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~--~~f~~~~   80 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ--ETFRRRM   80 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSC--CEESSHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCC--CccCCHH
Confidence            3567789999999999999999999888888889999999999999999999886   4577889999998  8899999


Q ss_pred             HHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhh-ccC
Q psy11318        130 DLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAV-HSG  168 (263)
Q Consensus       130 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~  168 (263)
                      .|..|+++|+++++|.|..|++.|.+...|.+|++. |.+
T Consensus        81 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           81 ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            999999999888899999999999999999999874 544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=4e-24  Score=151.19  Aligned_cols=110  Identities=23%  Similarity=0.515  Sum_probs=61.6

Q ss_pred             CCceeccc--ccccccchHHHHHHHHHhcCCCcccCC--cCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHH
Q psy11318         55 GIRFQCNK--CFRAYKLKKDLLAHTMLEHFGIRHPCS--ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRD  130 (263)
Q Consensus        55 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~  130 (263)
                      +++|.|.+  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|++.|+++++|.|.+|+  +.|.+...
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~   81 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ--RKFSRSDH   81 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTC--CEESCHHH
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccC--chhCCHHH
Confidence            34455543  555555555555555555555555555  4555555555555555555555555565555  55666666


Q ss_pred             HHHHHHHhCCCCCccC--CcchhhhcChHHHHHHHhhc
Q psy11318        131 LRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       131 l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  166 (263)
                      |..|+++|+++++|.|  +.|++.|.+...|.+|+++|
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            6666665655556666  45666666666666665544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=4.9e-24  Score=150.71  Aligned_cols=108  Identities=22%  Similarity=0.467  Sum_probs=65.2

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcCCCceecc--cccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHH
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCN--KCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNH  104 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H  104 (263)
                      +|.|.+  |++.|.+...|..|++.|+++.+|.|.  .|++.|.+...|..|++.|+++++|.|++|++.|.+...|..|
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   85 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH   85 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHH
Confidence            555654  666666666666666555555556665  4666666666666666555555666666666666666666666


Q ss_pred             HHHhcCCccccC--CCCCCCcccCCHHHHHHHHHHh
Q psy11318        105 ILKIHKAVLYQC--NECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       105 ~~~~~~~~~~~C--~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      ++.|+++++|.|  +.|+  +.|.+...|..|+++|
T Consensus        86 ~~~h~~~~~~~C~~~~C~--~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           86 TRTHTGEKPFSCRWPSCQ--KKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHTCCCEECCSTTCC--CEESSHHHHHHHHHTC
T ss_pred             HHHhcCCCCeeCCCCCCc--cccCCHHHHHHHHhcC
Confidence            666666666666  5566  6666666666666543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=4.3e-24  Score=152.16  Aligned_cols=113  Identities=26%  Similarity=0.533  Sum_probs=72.3

Q ss_pred             ceecc--cccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCC--CCCCcccCCHHHHH
Q psy11318         57 RFQCN--KCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNE--CSTSKDYLTKRDLR  132 (263)
Q Consensus        57 ~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~~~f~~~~~l~  132 (263)
                      +|.|+  .|++.|.+...|..|++.| ++++|.|..|++.|.+...|..|++.|+++++|.|.+  |+  +.|.+...|.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~--~~f~~~~~l~   81 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG--KRFSLDFNLR   81 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCC--CEESCHHHHH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCc--CccCCHHHHH
Confidence            45565  5666666666666666544 5566666666666666666666666666666777754  66  7777777777


Q ss_pred             HHHHHhCCCCCccCC--cchhhhcChHHHHHHHhhccCCCCC
Q psy11318        133 RHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       133 ~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      .|+++|+++++|.|+  .|++.|.+.+.|.+|+++|++++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            777777777777774  3777777777777777777766553

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=1.8e-24  Score=155.41  Aligned_cols=99  Identities=20%  Similarity=0.338  Sum_probs=55.3

Q ss_pred             CCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHH
Q psy11318         82 FGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLME  161 (263)
Q Consensus        82 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (263)
                      ++++|.|++|++.|.+...|..|++.|.++++|.|.+|+  ++|.+...|..|+++|+++++|.|..|++.|.+.+.|..
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCE--KVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSS--CEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccC--eecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            345555555555555555555555555555555555555  555555555555555555555555555555555555555


Q ss_pred             HHhhccCCC------CCcCCCCccccc
Q psy11318        162 HMAVHSGVR------KLTTGPIKTEQT  182 (263)
Q Consensus       162 H~~~h~~~~------~~~c~~c~~~~~  182 (263)
                      |+++|++++      +|+|..|++.|.
T Consensus        97 H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           97 HIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             HHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             HhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            555555432      355666665554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=1.3e-23  Score=150.85  Aligned_cols=92  Identities=23%  Similarity=0.400  Sum_probs=63.9

Q ss_pred             HHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHH
Q psy11318         21 HMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRH   99 (263)
Q Consensus        21 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~   99 (263)
                      |.++|.| .+|.|++|++.|.+...|+.|+++|.++++|.|.+|++.|.+...|..|++.|.++++|.|++|++.|.+..
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHH
Confidence            3445555 367777777777777777777777777777777777777777777777776666667777777777777777


Q ss_pred             HHHHHHHHhcCCc
Q psy11318        100 SLKNHILKIHKAV  112 (263)
Q Consensus       100 ~l~~H~~~~~~~~  112 (263)
                      .|..|++.+++++
T Consensus        93 ~L~~H~~~hh~~~  105 (133)
T 2lt7_A           93 FMSSHIKSVHSQD  105 (133)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHhHHhcCCC
Confidence            7777777666554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=6.2e-20  Score=126.84  Aligned_cols=91  Identities=24%  Similarity=0.429  Sum_probs=76.0

Q ss_pred             CCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHH
Q psy11318         82 FGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLME  161 (263)
Q Consensus        82 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (263)
                      .+++|.|.+|++.|.+...|..|++.|+++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|++.|.+...|.+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICH--KAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSC--CBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCcc--chhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            346788888888888888888888888888888888888  888888888888888888888888888888888888888


Q ss_pred             HHhhccCCCCCcC
Q psy11318        162 HMAVHSGVRKLTT  174 (263)
Q Consensus       162 H~~~h~~~~~~~c  174 (263)
                      |+++|+++++|.+
T Consensus        92 H~~~H~~~~~~~~  104 (106)
T 2ee8_A           92 HKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHTTSCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            8888888887754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=8.4e-20  Score=123.80  Aligned_cols=90  Identities=23%  Similarity=0.475  Sum_probs=76.4

Q ss_pred             cCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHH
Q psy11318         81 HFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLM  160 (263)
Q Consensus        81 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  160 (263)
                      .++++|.|.+|++.|.+...|..|++.|+++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|++.|.....|.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   81 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD--YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT   81 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSC--CEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCC--CccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHH
Confidence            3457788888888888888888888888888888888888  88888888888888888888888888888888888888


Q ss_pred             HHHhhccCCCCC
Q psy11318        161 EHMAVHSGVRKL  172 (263)
Q Consensus       161 ~H~~~h~~~~~~  172 (263)
                      +|+++|+++++.
T Consensus        82 ~H~~~h~~~~~p   93 (96)
T 2dmd_A           82 VHLRSHTGDSGP   93 (96)
T ss_dssp             HHHTTCCSCCCC
T ss_pred             HHHHHhcCCCCC
Confidence            888888877653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.3e-19  Score=122.88  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=42.4

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHh
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKI  108 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  108 (263)
                      +|.|.+|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.|+.+++|.|+.|++.|.....|..|++.|
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH   87 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHh
Confidence            44555555555555555555554444444555555555555555555555444445555555555555555555555555


Q ss_pred             cCC
Q psy11318        109 HKA  111 (263)
Q Consensus       109 ~~~  111 (263)
                      +++
T Consensus        88 ~~~   90 (96)
T 2dmd_A           88 TGD   90 (96)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            444

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=2.3e-19  Score=123.98  Aligned_cols=86  Identities=20%  Similarity=0.418  Sum_probs=48.1

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHh
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKI  108 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  108 (263)
                      +|.|.+|++.|.+...|..|++.|+++.+|.|.+|++.|.....|..|++.|+++++|.|.+|++.|.+...|..|++.|
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   96 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH   96 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHh
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCccc
Q psy11318        109 HKAVLY  114 (263)
Q Consensus       109 ~~~~~~  114 (263)
                      +++++|
T Consensus        97 ~~~~~~  102 (106)
T 2ee8_A           97 MQTSSP  102 (106)
T ss_dssp             TSCCCC
T ss_pred             CCCCCC
Confidence            555444

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=1.5e-19  Score=120.99  Aligned_cols=86  Identities=21%  Similarity=0.497  Sum_probs=65.7

Q ss_pred             CCcccCC--cCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHH
Q psy11318         83 GIRHPCS--ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLM  160 (263)
Q Consensus        83 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  160 (263)
                      +++|.|+  .|++.|.+...|..|++.|.++++|.|..|+  +.|.+...|..|+++|+++++|.|..|++.|.+.+.|.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   79 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICM--RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK   79 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTC--CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCC--cccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHH
Confidence            4567776  4777777777777777777777778888887  77888888888888887778888888888888888888


Q ss_pred             HHHhhccCCC
Q psy11318        161 EHMAVHSGVR  170 (263)
Q Consensus       161 ~H~~~h~~~~  170 (263)
                      +|+++|++++
T Consensus        80 ~H~~~H~~~k   89 (90)
T 1a1h_A           80 RHTKIHLRQK   89 (90)
T ss_dssp             HHHGGGGC--
T ss_pred             HHHHHhcccC
Confidence            8888877654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=2.3e-19  Score=117.93  Aligned_cols=77  Identities=26%  Similarity=0.580  Sum_probs=33.9

Q ss_pred             ccccccccccCChHHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML   79 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (263)
                      |.|++|++.|.+...|..|+++|.+ .+|.|..|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            4444444444444444444444433 2444444444444444444444444444444444444444444444444433

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=1.6e-19  Score=118.64  Aligned_cols=82  Identities=30%  Similarity=0.634  Sum_probs=58.1

Q ss_pred             cccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHh
Q psy11318         85 RHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA  164 (263)
Q Consensus        85 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (263)
                      +|.|.+|++.|.+...|..|++.|.++++|.|..|+  +.|.+...|..|++.|+++++|.|..|++.|.+.+.|.+|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCG--KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSC--CEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCC--hhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHH
Confidence            356777777777777777777777777777777777  777777777777777777777777777777777777777777


Q ss_pred             hccC
Q psy11318        165 VHSG  168 (263)
Q Consensus       165 ~h~~  168 (263)
                      +|+|
T Consensus        79 ~H~g   82 (82)
T 2kmk_A           79 KHTG   82 (82)
T ss_dssp             HHC-
T ss_pred             hhCC
Confidence            7653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=2e-19  Score=124.52  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             HHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChH
Q psy11318         78 MLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQES  157 (263)
Q Consensus        78 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  157 (263)
                      +.+.++++|.|.+|++.|.....|..|++.|  .++|.|.+|+  +.|.....|..|+. |.++++|.|..|++.|.+..
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~--~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCS--LRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTC--CCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCC--CccCCHHHHHHHHH-cCCCCCccCccccchhCCHH
Confidence            3556678888888888888888888888887  4688999998  88999999999985 88889999999999999999


Q ss_pred             HHHHHHh-hccCCCCCcCC
Q psy11318        158 DLMEHMA-VHSGVRKLTTG  175 (263)
Q Consensus       158 ~l~~H~~-~h~~~~~~~c~  175 (263)
                      .|.+|++ .|.++++|.+.
T Consensus        84 ~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            9999997 88888888764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=5.9e-19  Score=122.10  Aligned_cols=92  Identities=18%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             HhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHH
Q psy11318         23 DIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSL  101 (263)
Q Consensus        23 ~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l  101 (263)
                      +.|++ .+|.|.+|++.|.+...|..|++.|  ..+|.|.+|++.|.....|..|++ |.++++|.|.+|++.|.....|
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            34444 3677777777777777777777665  246777777777777777777764 6666677777777777777777


Q ss_pred             HHHHH-HhcCCccccCC
Q psy11318        102 KNHIL-KIHKAVLYQCN  117 (263)
Q Consensus       102 ~~H~~-~~~~~~~~~C~  117 (263)
                      ..|++ .|.++++|.+.
T Consensus        86 ~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            77775 55566666654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.2e-18  Score=117.84  Aligned_cols=78  Identities=24%  Similarity=0.363  Sum_probs=48.3

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCC--CcccCCcCCCcCCCHHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFG--IRHPCSECPKTFASRHSLKNHIL  106 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~  106 (263)
                      +|.|.+|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.|+++  ++|.|+.|++.|.+...|..|++
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            5566666666666666666666655555666666666666666666666655554  56666666666666666666664

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-20  Score=131.67  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             HHHHhcCCCcccCCcCCCcCCCHHHHHHHHHH--hcCCccc-cCCCCCCCccc--CCHHHHHHHHHHhCCCCCccCCcch
Q psy11318         76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILK--IHKAVLY-QCNECSTSKDY--LTKRDLRRHMKLHFNGKRYHCTQCS  150 (263)
Q Consensus        76 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~-~C~~C~~~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~  150 (263)
                      |++.|.++++|.|..|++.|.+...|..|++.  +.+.+++ .|.+|+  +.|  .....|..|+++|.++++|.|.+|+
T Consensus        10 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~--~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~   87 (115)
T 2dmi_A           10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNP--KRWSKPRKRSLLEMEGKEDAQKVLKCMYCG   87 (115)
T ss_dssp             CCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCC--SCCSSCCCCCCCCCCCSCCCCSSCBCSSSC
T ss_pred             heeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCC--cccccccHHHHHHHhhccCCCcceECCCCC
Confidence            33334444444444444444444444444444  3333332 255555  444  5555555555555555555555566


Q ss_pred             hhhcChHHHHHHHhhccCCCC
Q psy11318        151 KFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       151 ~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      +.|.+...|.+|++.|+....
T Consensus        88 k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           88 HSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CBCSSHHHHHHHHHHTTTTTC
T ss_pred             CccCCHHHHHHHHHHhCCccc
Confidence            556655556666555554433

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.76  E-value=2.3e-18  Score=115.20  Aligned_cols=83  Identities=25%  Similarity=0.449  Sum_probs=51.0

Q ss_pred             ccccC--CCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHH
Q psy11318         29 RYQCE--ECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHIL  106 (263)
Q Consensus        29 ~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  106 (263)
                      +|.|+  .|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHG
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHH
Confidence            56665  3666666666666666666666666666666666666666666666665566666666666666666666666


Q ss_pred             HhcCC
Q psy11318        107 KIHKA  111 (263)
Q Consensus       107 ~~~~~  111 (263)
                      .|+++
T Consensus        84 ~H~~~   88 (90)
T 1a1h_A           84 IHLRQ   88 (90)
T ss_dssp             GGGC-
T ss_pred             Hhccc
Confidence            55554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=6e-20  Score=128.83  Aligned_cols=94  Identities=23%  Similarity=0.335  Sum_probs=47.2

Q ss_pred             HHHHHHHhhCC-cccccCCCccccCChhHHHHHHHH--hcCCCce-ecccccccc--cchHHHHHHHHHhcCCCcccCCc
Q psy11318         17 TLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNA--IHRGIRF-QCNKCFRAY--KLKKDLLAHTMLEHFGIRHPCSE   90 (263)
Q Consensus        17 ~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~-~C~~C~~~f--~~~~~l~~H~~~~~~~~~~~C~~   90 (263)
                      .|..|+++|++ .+|.|.+|++.|.+...|..|++.  +.+..++ .|..|++.|  .....|..|++.|.++++|.|++
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~   85 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence            45555555555 255555555555555555555555  3333332 255555444  44444444544444444444444


Q ss_pred             CCCcCCCHHHHHHHHHHhcC
Q psy11318         91 CPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        91 C~~~f~~~~~l~~H~~~~~~  110 (263)
                      |++.|.....|..|++.++.
T Consensus        86 C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTT
T ss_pred             CCCccCCHHHHHHHHHHhCC
Confidence            44444444444444444443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.5e-18  Score=116.19  Aligned_cols=84  Identities=29%  Similarity=0.518  Sum_probs=55.5

Q ss_pred             CCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC--CCccCCcchhhhcChHHHH
Q psy11318         83 GIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG--KRYHCTQCSKFYIQESDLM  160 (263)
Q Consensus        83 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~  160 (263)
                      +++|.|.+|++.|.+...|..|++.|+++++|.|.+|+  +.|.+...|..|++.|+++  ++|.|..|++.|.+...|.
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCG--LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSC--CEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCC--CccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45566666666666666666666666666666666666  6666666666666666665  6677777777777777777


Q ss_pred             HHHh-hccC
Q psy11318        161 EHMA-VHSG  168 (263)
Q Consensus       161 ~H~~-~h~~  168 (263)
                      .|++ .|.+
T Consensus        83 ~H~~~~H~~   91 (95)
T 2yt9_A           83 GHIKQVHSG   91 (95)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhcCC
Confidence            7764 4544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.7e-18  Score=120.32  Aligned_cols=83  Identities=27%  Similarity=0.526  Sum_probs=46.4

Q ss_pred             CCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHH
Q psy11318         82 FGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLME  161 (263)
Q Consensus        82 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (263)
                      ++++|.| .|++.|.+...|..|++.|+++++|.|.+|+  +.|.+...|..|+++|+++++|.|..|++.|.+...|.+
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCG--KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTS--CEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCC--cccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            3455555 5555555555555555555555555555555  555555555555555555555555555555555555555


Q ss_pred             HHhhcc
Q psy11318        162 HMAVHS  167 (263)
Q Consensus       162 H~~~h~  167 (263)
                      |++.|+
T Consensus        84 H~~~~~   89 (110)
T 2csh_A           84 HVTSCT   89 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            555544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.7e-19  Score=123.74  Aligned_cols=88  Identities=26%  Similarity=0.487  Sum_probs=83.5

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccce
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVR  186 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~  186 (263)
                      .|.++++|.| .|+  +.|.+...|..|++.|.++++|.|..|++.|.+...|.+|+++|+++++|.|..|++.|.....
T Consensus         4 ~h~~~k~~~C-~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            4 GSSGDKLYPC-QCG--KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCCEEC-TTS--CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHH
T ss_pred             CCCCCCCEec-cCC--CccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHH
Confidence            4678899999 899  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCccc
Q psy11318        187 ELRHVGFPMKT  197 (263)
Q Consensus       187 l~~H~~~~~~~  197 (263)
                      |..|++.|...
T Consensus        81 l~~H~~~~~~~   91 (110)
T 2csh_A           81 FHRHVTSCTKS   91 (110)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHcccc
Confidence            99999986653

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.72  E-value=1.4e-18  Score=115.87  Aligned_cols=81  Identities=21%  Similarity=0.404  Sum_probs=69.8

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML   79 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (263)
                      |+|.|++|++.|.....|..|+++|++. +|.|.+|++.|.....|..|++.+++ .+|.|..|++.|.+...|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            6889999999999999999999988874 89999999999999999999988774 778899999999888888888877


Q ss_pred             hcC
Q psy11318         80 EHF   82 (263)
Q Consensus        80 ~~~   82 (263)
                      +|.
T Consensus        81 ~h~   83 (88)
T 1llm_C           81 LKK   83 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=2.4e-17  Score=112.43  Aligned_cols=83  Identities=25%  Similarity=0.557  Sum_probs=65.0

Q ss_pred             CcccCCc--CCCcCCCHHHHHHHHHHhcCCccccCC--CCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHH
Q psy11318         84 IRHPCSE--CPKTFASRHSLKNHILKIHKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDL  159 (263)
Q Consensus        84 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  159 (263)
                      ++|.|.+  |++.|.....|..|++.|+++++|.|.  .|+  +.|.+...|..|+++|+++++|.|..|++.|.+...|
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCD--WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCC--CEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCC--CccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            5677775  888888888888888877777788885  477  7788888888888888888888888888888888888


Q ss_pred             HHHHhhccC
Q psy11318        160 MEHMAVHSG  168 (263)
Q Consensus       160 ~~H~~~h~~  168 (263)
                      .+|+++|++
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            888877753

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.70  E-value=9.9e-18  Score=102.39  Aligned_cols=58  Identities=28%  Similarity=0.586  Sum_probs=47.7

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      ++||.|.+|+  ++|...+.|..|+++|+|+++|.|..||+.|.+.+.|.+|+++|+|+.
T Consensus         2 EKpy~C~~C~--k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCG--KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTC--CEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCC--CEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6788888888  888888888888888888888888888888888888888888887753

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.70  E-value=6.6e-18  Score=103.18  Aligned_cols=55  Identities=25%  Similarity=0.576  Sum_probs=39.8

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHhcCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRG   55 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~   55 (263)
                      |||+|++||+.|.....|..|+++|++. +|.|.+||+.|.....|.+|+++|.++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            5777777777777777777777777663 777777777777777777777776554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=2.7e-17  Score=109.62  Aligned_cols=81  Identities=26%  Similarity=0.616  Sum_probs=63.3

Q ss_pred             CcccCCc--CCCcCCCHHHHHHHHHHhcCCccccCC--CCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHH
Q psy11318         84 IRHPCSE--CPKTFASRHSLKNHILKIHKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDL  159 (263)
Q Consensus        84 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  159 (263)
                      ..|.|.+  |++.|.+...|..|++.|.++++|.|+  .|+  +.|.+...|..|++.|.++++|.|..|++.|.+.+.|
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCG--WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTC--CEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCC--CccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHH
Confidence            4577777  777777777777777777777778886  477  7788888888888888788888888888888888888


Q ss_pred             HHHHhhc
Q psy11318        160 MEHMAVH  166 (263)
Q Consensus       160 ~~H~~~h  166 (263)
                      ..|+++|
T Consensus        82 ~~H~~~H   88 (89)
T 2wbs_A           82 ALHMKRH   88 (89)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHhh
Confidence            8887776

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=2.8e-17  Score=109.59  Aligned_cols=78  Identities=29%  Similarity=0.586  Sum_probs=41.5

Q ss_pred             Cccccc--cccccCChHHHHHHHHhhCC-cccccC--CCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHH
Q psy11318          2 RYYCNA--CSKNFSAKDTLNKHMDIHKG-VRYQCE--ECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH   76 (263)
Q Consensus         2 ~y~C~~--C~~~f~~~~~L~~H~~~h~~-~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H   76 (263)
                      +|.|..  |++.|.+...|..|++.|.+ .+|.|+  .|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            355555  55555555555555555554 245554  3555555555555555555555555555555555555555555


Q ss_pred             HHH
Q psy11318         77 TML   79 (263)
Q Consensus        77 ~~~   79 (263)
                      ++.
T Consensus        85 ~~~   87 (89)
T 2wbs_A           85 MKR   87 (89)
T ss_dssp             GGG
T ss_pred             HHh
Confidence            443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=108.75  Aligned_cols=81  Identities=17%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcCCCceecc--cccccccchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHH
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCN--KCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNH  104 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H  104 (263)
                      +|.|.+  |++.|.+...|..|++.|+++.+|.|.  .|++.|.+...|..|++.|+++++|.|+.|++.|.....|..|
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   94 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH   94 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHH
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHH
Confidence            455554  666666666666666655555555554  3555555555555555555555555555555555555555555


Q ss_pred             HHHhc
Q psy11318        105 ILKIH  109 (263)
Q Consensus       105 ~~~~~  109 (263)
                      ++.|.
T Consensus        95 ~~~H~   99 (100)
T 2ebt_A           95 MKRHQ   99 (100)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            55543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=1.4e-17  Score=110.94  Aligned_cols=83  Identities=14%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             CCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHH
Q psy11318         83 GIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEH  162 (263)
Q Consensus        83 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  162 (263)
                      +++|.|++|++.|.+...|..|++.|.++++|.|..|+  +.|.+...|..|+++|++ .+|.|..|++.|.....|..|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG--RKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC--CEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCC--CccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHH
Confidence            36788999999999999999999999899999999999  899999999999998875 779999999999999999999


Q ss_pred             HhhccC
Q psy11318        163 MAVHSG  168 (263)
Q Consensus       163 ~~~h~~  168 (263)
                      ++.+++
T Consensus        78 ~~~~h~   83 (88)
T 1llm_C           78 VARLKK   83 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.67  E-value=8.6e-17  Score=106.15  Aligned_cols=76  Identities=29%  Similarity=0.522  Sum_probs=47.2

Q ss_pred             Cccc--cccccccCChHHHHHHHHhhCC-cccccCC--CccccCChhHHHHHHHHhcCCCceeccc---ccccccchHHH
Q psy11318          2 RYYC--NACSKNFSAKDTLNKHMDIHKG-VRYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCNK---CFRAYKLKKDL   73 (263)
Q Consensus         2 ~y~C--~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~---C~~~f~~~~~l   73 (263)
                      ||.|  +.|++.|.+...|..|+++|++ .+|.|++  |++.|.+...|.+|+++|++   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4566  6666666666666666666655 3566655  66666666666666666555   66666   66666666666


Q ss_pred             HHHHHHh
Q psy11318         74 LAHTMLE   80 (263)
Q Consensus        74 ~~H~~~~   80 (263)
                      ..|++.+
T Consensus        78 ~~H~~~h   84 (85)
T 2j7j_A           78 LKHVAEC   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            6665544

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=2.2e-16  Score=104.20  Aligned_cols=78  Identities=24%  Similarity=0.507  Sum_probs=59.1

Q ss_pred             cccc--CCCccccCChhHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHhcCCCcccCCc---CCCcCCCHHHH
Q psy11318         29 RYQC--EECPKDFSTRKYLTQHQNAIHRGIRFQCNK--CFRAYKLKKDLLAHTMLEHFGIRHPCSE---CPKTFASRHSL  101 (263)
Q Consensus        29 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~---C~~~f~~~~~l  101 (263)
                      ||.|  +.|++.|.+...|..|+++|.++.+|.|..  |++.|.+...|..|++.|++   |.|..   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4777  778888888888888887777777777777  77777777777777777666   77777   77777777777


Q ss_pred             HHHHHHhc
Q psy11318        102 KNHILKIH  109 (263)
Q Consensus       102 ~~H~~~~~  109 (263)
                      ..|++.||
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            77777654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.7e-16  Score=104.98  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             HHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC----CCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        101 LKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG----KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       101 l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |..|++.|.++++|.|.+|+  +.|.....|..|++.+++.    ++|.|..|++.|.+...|.+|+++|++++++.|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~--~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~   80 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCD--KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGEN   80 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSS--CEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCC
T ss_pred             cccccceecCCCCCcCCCCC--CccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCC
Confidence            34567777777788888887  7788888888887776654    67888888888888888888888888888888888


Q ss_pred             Ccccc
Q psy11318        177 IKTEQ  181 (263)
Q Consensus       177 c~~~~  181 (263)
                      |+..+
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=5e-16  Score=101.02  Aligned_cols=70  Identities=24%  Similarity=0.459  Sum_probs=50.7

Q ss_pred             CCccccCCC--CCCCcccCCHHHHHHHHH-HhCCCCCccCCc--chhhhcChHHHHHHHhhccCCCCCcCCCCcccc
Q psy11318        110 KAVLYQCNE--CSTSKDYLTKRDLRRHMK-LHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQ  181 (263)
Q Consensus       110 ~~~~~~C~~--C~~~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~  181 (263)
                      ++++|.|..  |+  +.|.+...|..|++ .|.++++|.|..  |++.|.+...|.+|+++|+++++|.|..|++.|
T Consensus         4 ~~~~~~C~~~~C~--~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCG--RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTC--CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCc--CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            456667765  66  77777777777776 577777777776  777777777777777777777777777777766

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.6e-16  Score=103.41  Aligned_cols=75  Identities=20%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             HHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCC----CceecccccccccchHHHHHHHHHhcCCCcccCCcCCC
Q psy11318         19 NKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRG----IRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPK   93 (263)
Q Consensus        19 ~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   93 (263)
                      ..|+++|++ .+|.|.+|++.|.....|.+|++.++.+    .+|.|..|++.|.....|..|++.|++++++.|..|+.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~   83 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGP   83 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCC
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCC
Confidence            334444444 2455555555555555555554444433    23444444444444444444444444444444444443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=2.9e-16  Score=112.17  Aligned_cols=68  Identities=22%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318         69 LKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus        69 ~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      ....|..|+ .|+++++|.|++|++.|.....|..|++.|  +++|.|..|+  +.|...+.|..|+++|++.
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~--k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCK--KEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTC--CBCSSHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCC--cccCCHHHHHHHHHHHCCc
Confidence            334444444 455556666666666666666666666655  5566666666  6666666666666666553

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.5e-15  Score=98.25  Aligned_cols=65  Identities=34%  Similarity=0.691  Sum_probs=52.4

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      +.++++|.|.+|+  +.|.....|..|+++|.++++|.|..|++.|.....|.+|+++|+++++|.|
T Consensus        13 ~~~~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECG--KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSC--CBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCC--cccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456778888888  7888888888888888888888888888888888888888888888888776

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=2.3e-15  Score=97.87  Aligned_cols=69  Identities=29%  Similarity=0.584  Sum_probs=41.8

Q ss_pred             CCcccCCc--CCCcCCCHHHHHHHHH-HhcCCccccCCC--CCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhh
Q psy11318         83 GIRHPCSE--CPKTFASRHSLKNHIL-KIHKAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFY  153 (263)
Q Consensus        83 ~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  153 (263)
                      +++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |+  +.|.+...|..|+++|+++++|.|..|++.|
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACG--KSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTC--CEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCc--CccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            34555554  6666666666666665 455566666665  66  6666666666666666666666666666655

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=4.8e-15  Score=99.97  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=65.5

Q ss_pred             CcCCCHHHHHHHHHHhcCCccccCCCCCCCccc-CCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHH-HhhccCCC
Q psy11318         93 KTFASRHSLKNHILKIHKAVLYQCNECSTSKDY-LTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEH-MAVHSGVR  170 (263)
Q Consensus        93 ~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~  170 (263)
                      ..|.....|..|++.+.++++|.|+.|+  +.| .+...|..|+++| ++++|.|..|++.|.....|.+| +++|+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~--k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQ--AVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTC--SCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCC--CCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            4566677788888888888889999998  889 8899999999888 88899999999999999999999 88887655


Q ss_pred             CCcC
Q psy11318        171 KLTT  174 (263)
Q Consensus       171 ~~~c  174 (263)
                      .|.+
T Consensus        91 ~~~~   94 (96)
T 2ctd_A           91 SGPS   94 (96)
T ss_dssp             SCSC
T ss_pred             CCCC
Confidence            4443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=7.4e-16  Score=104.60  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHhcCCccccCCCCCCCcccC-CHHHHHHHHHHhCC-CCCccCCcchhhhcChHHHHHHHhhccCCCCCc
Q psy11318         97 SRHSLKNHILKIHKAVLYQCNECSTSKDYL-TKRDLRRHMKLHFN-GKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLT  173 (263)
Q Consensus        97 ~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  173 (263)
                      ....+..|++.|.++++|.|.+|+  +.|. ....|..|+++|++ +++|.|.+|++.|.+...|.+|++.|+++++..
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~--k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCN--VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTC--CCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCC--CChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            334456677777777777777777  7777 77777777777777 777778778888888778888877777776643

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.54  E-value=5.1e-16  Score=110.90  Aligned_cols=71  Identities=13%  Similarity=0.347  Sum_probs=64.6

Q ss_pred             cCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318         94 TFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus        94 ~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      .|.....|..|+ .|+++++|.|.+|+  +.|.....|..|+++|  +++|.|..|++.|.+.+.|.+|++.|+++
T Consensus        56 ~~~~~~~l~~h~-~h~~~~~~~C~~C~--k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           56 LLDESSYLYRLL-ASKAISQFVCPLCL--MPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             GTTTHHHHHHHH-HHHHHCSEECTTTC--CEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHH-HhCCCCCeECCCCC--cccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            445778888887 58899999999999  9999999999999998  88999999999999999999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=8.1e-15  Score=94.03  Aligned_cols=63  Identities=27%  Similarity=0.617  Sum_probs=44.7

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      +.++++|.|..|+  +.|.+...|..|+++|.++++|.|..|++.|.+...|.+|+++|+++++|
T Consensus        12 ~~~~~~~~C~~C~--k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQ--ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSS--CCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCC--ceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3456667777777  77777777777777777777777777777777777777777777776654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3e-15  Score=101.57  Aligned_cols=69  Identities=26%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             HHHHHHHhcCCCceeccccccccc-chHHHHHHHHHhcC-CCcccCCcCCCcCCCHHHHHHHHHHhcCCcc
Q psy11318         45 LTQHQNAIHRGIRFQCNKCFRAYK-LKKDLLAHTMLEHF-GIRHPCSECPKTFASRHSLKNHILKIHKAVL  113 (263)
Q Consensus        45 l~~H~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  113 (263)
                      +..|++.|.++.+|.|.+|++.|. ....|..|++.|+. +++|.|.+|++.|.....|..|++.|+++++
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            344444444444444444444444 44444444444444 3444444444444444444444444444443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.5e-14  Score=93.54  Aligned_cols=64  Identities=25%  Similarity=0.484  Sum_probs=48.7

Q ss_pred             cCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318         81 HFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus        81 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      .++++|.|.+|++.|.....|..|++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG--KAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSC--CEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCC--CccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456777777777777777777777777777777777777  777777777777777777777776

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=7e-15  Score=99.82  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=59.2

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHH-Hh---CCCCCccCCcchhhhcChHHHHHH-HhhccCCCCCcCCCCc
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMK-LH---FNGKRYHCTQCSKFYIQESDLMEH-MAVHSGVRKLTTGPIK  178 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~c~~c~  178 (263)
                      .|+++|.|..|+  +.|...+.|..|++ .|   .++++|.|..||+.|...+.|.+| +++|+++++|.|.++.
T Consensus        14 ~gekpy~C~~Cg--k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCT--FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCS--CEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCC--CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            377889999999  99999999999987 47   567899999999999999999999 7899999999998644

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.2e-14  Score=98.61  Aligned_cols=63  Identities=16%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             ccccCCCccccCChhHHHHHHHH-h---cCCCceecccccccccchHHHHHH-HHHhcCCCcccCCcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA-I---HRGIRFQCNKCFRAYKLKKDLLAH-TMLEHFGIRHPCSEC   91 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~-~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~C~~C   91 (263)
                      +|.|..|++.|.....|+.|++. |   .++++|.|.+|++.|.....|..| ++.|.++++|.|.++
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            56666666666666666666653 4   234556666666666666666666 555666666666553

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=5.7e-14  Score=94.66  Aligned_cols=64  Identities=20%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             CChhHHHHHHHHhcCCCceecccccccc-cchHHHHHHHHHhcCCCcccCCcCCCcCCCHHHHHHH
Q psy11318         40 STRKYLTQHQNAIHRGIRFQCNKCFRAY-KLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNH  104 (263)
Q Consensus        40 ~~~~~l~~H~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H  104 (263)
                      .....|..|++.+.++.+|.|..|++.| .+...|..|++.| ++++|.|.+|++.|.....|..|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           17 AAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             CTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHH
T ss_pred             CCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHH
Confidence            3333444444444444444444444444 3444444444444 33444444444444444444444

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.6e-14  Score=91.49  Aligned_cols=63  Identities=29%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      +.++++|.|.+|+  +.|.+...|..|+++|.++++|.|.+|++.|.+...|.+|+++|+++++.
T Consensus         4 ~~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECS--YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSS--CEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCC--cccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4566777888877  77888888888887777777888888888888888888888887777653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.49  E-value=2.6e-14  Score=86.62  Aligned_cols=53  Identities=30%  Similarity=0.524  Sum_probs=32.4

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      ++|.|++|++.|.+...|..|+++|++ .+|.|++|++.|.....|..|++.||
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            356666666666666666666666655 35666666666666666666666654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.4e-14  Score=92.36  Aligned_cols=62  Identities=29%  Similarity=0.538  Sum_probs=45.9

Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|..|++.|.+...|.+|+++|+++
T Consensus         7 ~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            7 GIHSGEKPYGCVECG--KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CTTTTCCCEECSSSC--CEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cccCCCCCccCCCCC--CccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            345667777777777  77777777777777777777777777777777777777777777654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.48  E-value=5e-14  Score=85.37  Aligned_cols=54  Identities=30%  Similarity=0.643  Sum_probs=37.9

Q ss_pred             CccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHhcCC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRG   55 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~   55 (263)
                      ||.|++|++.|.....|..|+++|++. +|.|++|++.|.....|..|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            567777777777777777777777663 677777777777777777777766554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=88.70  Aligned_cols=63  Identities=24%  Similarity=0.499  Sum_probs=46.0

Q ss_pred             hcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCc
Q psy11318         80 EHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY  144 (263)
Q Consensus        80 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~  144 (263)
                      +.++++|.|..|++.|.....|..|++.|.++++|.|.+|+  +.|.+...|..|+++|+++++|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG--AQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTC--CEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCC--chhCCHHHHHHHHHhcCCCCCC
Confidence            33456777777777777777777777777777777777777  7777777777777777777664

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.47  E-value=3.8e-14  Score=85.89  Aligned_cols=55  Identities=25%  Similarity=0.463  Sum_probs=39.1

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +++|.|.+|+  +.|.+...|..|+++|.++++|.|..|++.|.+...|.+|++.|+
T Consensus         2 ~~~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCG--KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTC--CBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCc--chhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4667777777  777777777777777777777777777777777777777777765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.47  E-value=4.6e-14  Score=92.43  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=45.4

Q ss_pred             cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcC
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      .+|.|++|++.|.+...|.+|+++|+++++|.|.+|++.|.+...|..|++..|.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            3688888888888888888888888888888888888888888888888765443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.44  E-value=1.4e-13  Score=83.30  Aligned_cols=56  Identities=27%  Similarity=0.608  Sum_probs=41.6

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      ||.|..|+  +.|.+...|..|+++|.++++|.|..|++.|.+.+.|.+|+++|++++
T Consensus         1 p~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECG--IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTC--CBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCc--CcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            46777777  777777777777777777777777777777777777777777776654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.8e-13  Score=86.64  Aligned_cols=48  Identities=27%  Similarity=0.451  Sum_probs=17.6

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT   77 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   77 (263)
                      |.|.+|++.|.....|.+|+++|+++.+|.|.+|++.|.....|..|+
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~   57 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM   57 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6e-14  Score=87.73  Aligned_cols=60  Identities=25%  Similarity=0.488  Sum_probs=47.0

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHH-h-CCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKL-H-FNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      .|.++++|.|+.|+  +.|.+...|..|++. | .++++|.|..|++.|.+.+.|.+|++.|++
T Consensus         4 ~h~~~k~~~C~~C~--k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCS--RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTC--CEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCc--chhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45677788888888  788888888888876 5 477788888888888888888888887775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=9.4e-14  Score=90.93  Aligned_cols=59  Identities=20%  Similarity=0.488  Sum_probs=41.3

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHh-hccCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSGV  169 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~  169 (263)
                      .+.++|.|++|+  +.|.+...|..|+++|+++++|.|..|++.|.+...|.+|++ .|.++
T Consensus        24 ~~~~~h~C~~Cg--k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           24 ASAECHLCPVCG--ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCCTTEECTTSC--CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCEECCCCC--CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            345567777777  777777777777777777777777777777777777777753 45443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=3.3e-14  Score=91.86  Aligned_cols=63  Identities=25%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             HHHHhhCC-cccccCCCccccCChhHHHHHHHHhc-CC-CceecccccccccchHHHHHHHHHhcC
Q psy11318         20 KHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIH-RG-IRFQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus        20 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~-~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      .|+++|++ .+|.|.+|++.|.....|+.|++.+| ++ .+|.|.+|++.|.+...|..|++.+|.
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            45555554 25555555555555555555554222 22 345555555555555555555544443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=9.1e-14  Score=89.76  Aligned_cols=66  Identities=18%  Similarity=0.410  Sum_probs=49.8

Q ss_pred             HHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHH-HhCCC-CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        102 KNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNG-KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       102 ~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ..|++.|.++++|.|.+|+  +.|.+...|..|++ .|.++ ++|.|..|++.|.+...|.+|++.+++.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICH--ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTC--CEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccccccCCCCCeECCCcC--chhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3466777778888888888  78888888888876 45553 6788888888888888888888876653

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.5e-13  Score=83.17  Aligned_cols=50  Identities=26%  Similarity=0.731  Sum_probs=38.7

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQN   50 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~   50 (263)
                      |+|.|++|++.|.+...|..|+++|++. +|.|++|++.|.....|..|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            5778888888888888888888777764 7788888888888888888864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=3e-13  Score=86.09  Aligned_cols=53  Identities=30%  Similarity=0.595  Sum_probs=22.8

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEH   81 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   81 (263)
                      +|.|++|++.|.....|..|++.|+++.+|.|.+|++.|.....|..|++.|+
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            44444444444444444444444444444444444444444444444443333

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.5e-13  Score=87.16  Aligned_cols=54  Identities=26%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC---CCceecccccccccchHHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR---GIRFQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      +|.|.+|++.|.....|..|++.|++   +.+|.|.+|++.|.....|..|++.+|.
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            56666666666666666666655553   4556666666666666666666544443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.6e-13  Score=89.62  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             cccCCCccccCChhHHHHHHHH-hcCCCc--------eecccccccccchHHHHHHHHHhcCCCcccCC
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNA-IHRGIR--------FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCS   89 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   89 (263)
                      |.|.+|++.|.....|.+|++. |.++.+        |.|..|++.|.....|..|++.|.++++|.|+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4455555555555555555444 333333        45555555555555555555555555555553

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.6e-13  Score=86.19  Aligned_cols=62  Identities=21%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCC---CCCccCCcchhhhcChHHHHHHHh-hccCCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN---GKRYHCTQCSKFYIQESDLMEHMA-VHSGVRK  171 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~  171 (263)
                      |.++++|.|.+|+  +.|.....|..|+++|.+   +++|.|..|++.|.....|.+|++ .|.+..+
T Consensus         2 h~~~k~~~C~~C~--k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            2 SSGSSGLQCEICG--FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCSCCCEECSSSC--CEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCcCeECCCCC--CeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4566667777776  667777777777766664   666777777777777777777763 3444443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.7e-16  Score=98.47  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        100 SLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       100 ~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      .|..|++.|.++++|.|.+|+  +.|.+...|..       +++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~--k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCG--IIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSC--CEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCccc--chhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            456788888888999999999  88888777655       7899999999999999999999999999999999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=9.4e-13  Score=80.53  Aligned_cols=54  Identities=30%  Similarity=0.748  Sum_probs=37.0

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHH-hhccC
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSG  168 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~  168 (263)
                      +|.|..|+  +.|.+...|..|+++|+++++|.|..|++.|.+.+.|.+|+ ++|.+
T Consensus         2 ~~~C~~C~--~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCT--RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTC--CCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCc--cccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            56677777  66777777777777777777777777777777777777775 45544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=6.1e-13  Score=83.06  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=8.6

Q ss_pred             cccCCcCCCcCCCHHHHHHHHHH
Q psy11318         85 RHPCSECPKTFASRHSLKNHILK  107 (263)
Q Consensus        85 ~~~C~~C~~~f~~~~~l~~H~~~  107 (263)
                      +|.|+.|++.|.+...|..|++.
T Consensus        40 ~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           40 VYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH
Confidence            33333333333333333333333

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.5e-12  Score=86.37  Aligned_cols=60  Identities=22%  Similarity=0.474  Sum_probs=44.0

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCCCCC--------ccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        114 YQCNECSTSKDYLTKRDLRRHMKL-HFNGKR--------YHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       114 ~~C~~C~~~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      +.|..|+  +.|.+...|..|+++ |.++++        |.|..|++.|.....|.+|+++|+++++|.|.
T Consensus        26 ~~C~~C~--k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCD--RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCC--CCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             Ccccccc--cccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4566666  667777777777766 666555        77888888888888888888888888888775

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=4.7e-15  Score=94.75  Aligned_cols=70  Identities=21%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             hHHHHHHHHhhCC-cccccCCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHHHHhcCCCcccCCcC
Q psy11318         15 KDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSEC   91 (263)
Q Consensus        15 ~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   91 (263)
                      ...|..|+++|.+ .+|.|.+|++.|.....|..       +.+|.|..|++.|.....|..|++.|+++++|.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            3456777777776 47888888888877777766       5667777777777777777777777777777777665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.1e-12  Score=82.28  Aligned_cols=56  Identities=25%  Similarity=0.665  Sum_probs=38.0

Q ss_pred             cCCccccCC--CCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhc
Q psy11318        109 HKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       109 ~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      .++++|.|+  .|+  +.|.+...|..|+++|.++++|.|..|++.|.+.+.|.+|+++|
T Consensus        15 ~~~~~~~C~~~~C~--k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESCD--RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTBC--CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCCC--CccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            355666675  466  66777777777776666667777777777777777777776665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3e-12  Score=79.90  Aligned_cols=59  Identities=17%  Similarity=0.295  Sum_probs=47.1

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC-cchhhhcChHHHHHHHhhccCCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT-QCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      .++++|.|..|+  +.|. ...|..|+++ .++++|.|. .|++.|...+.|.+|+++|....+
T Consensus         6 C~~~~~~C~~C~--k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCT--KEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSC--CEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccC--CccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            356788888888  8888 8888888887 788888888 888888888888888888766543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.2e-12  Score=79.78  Aligned_cols=50  Identities=22%  Similarity=0.379  Sum_probs=23.9

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecc-cccccccchHHHHHHHHHh
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN-KCFRAYKLKKDLLAHTMLE   80 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~   80 (263)
                      +|.|..|++.|. ...|..|+++ .++++|.|. .|++.|.....|..|++.|
T Consensus        10 ~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A           10 TQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             EEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            444444444444 4444444444 444444444 4444444444444444443

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=74.62  Aligned_cols=44  Identities=25%  Similarity=0.451  Sum_probs=35.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            55667788888888888888888888888888888888888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.23  E-value=1.4e-12  Score=75.22  Aligned_cols=44  Identities=25%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45567777777777777777777777777777777777777765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.1e-12  Score=74.42  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            55667777888888888888888888888888888888888766

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.23  E-value=2.1e-12  Score=74.37  Aligned_cols=44  Identities=23%  Similarity=0.349  Sum_probs=36.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            56677888888888888888888888888888888888888776

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=74.77  Aligned_cols=44  Identities=25%  Similarity=0.461  Sum_probs=36.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55677888888888888888888888888888888888888776

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.2e-12  Score=74.30  Aligned_cols=44  Identities=27%  Similarity=0.494  Sum_probs=35.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667778888888888888888888888888888888888776

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.1e-12  Score=74.43  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            55667777888888888888888888888888888888888766

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.22  E-value=2.1e-12  Score=74.42  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55677788888888888888888888888888888888888776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=74.15  Aligned_cols=44  Identities=18%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+...|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45667778888888888888888888888888888888888766

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.6e-12  Score=73.99  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=35.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45667788888888888888888888888888888888888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.22  E-value=2.2e-12  Score=74.36  Aligned_cols=44  Identities=25%  Similarity=0.484  Sum_probs=35.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55677788888888888888888888888888888888888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.8e-12  Score=73.89  Aligned_cols=43  Identities=19%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             HHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        135 MKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       135 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      +++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4456677777777777777777777777777777777777665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.22  E-value=2.1e-12  Score=74.41  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.7e-12  Score=73.94  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777778888888888888888888777777777777765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.7e-12  Score=73.97  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45667788888888888888888888888888888888888776

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.6e-12  Score=74.01  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667778888888888888888888888888888888888766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.8e-12  Score=73.89  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566777777777777777777777777777777777777765

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.2e-12  Score=74.37  Aligned_cols=44  Identities=23%  Similarity=0.396  Sum_probs=34.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            55667777888888888888888888888888888888888766

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.5e-12  Score=74.05  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667778888888888888888888888888888888888766

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.4e-12  Score=74.14  Aligned_cols=44  Identities=20%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566777777777777777777777777777777777777765

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=74.25  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=34.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667778888888888888888888888888888888888776

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.7e-12  Score=73.93  Aligned_cols=44  Identities=27%  Similarity=0.412  Sum_probs=35.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667788888888888888888888888888888888888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.2e-12  Score=73.62  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55667777888888888888888888888888888888888766

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.8e-12  Score=73.84  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55667778888888888888888888888888888888888766

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=73.72  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566777777777777777777777777777777777777665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=74.25  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=33.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45567777777787788888877778888777777777777766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=74.28  Aligned_cols=44  Identities=18%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566677777777777777777777777777777777777665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.2e-12  Score=73.60  Aligned_cols=44  Identities=25%  Similarity=0.396  Sum_probs=36.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=74.26  Aligned_cols=44  Identities=23%  Similarity=0.334  Sum_probs=33.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55567777777777777777777777777777777777777765

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.7e-12  Score=73.95  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45566777777777777777777777777777777777777765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.20  E-value=3.1e-12  Score=73.70  Aligned_cols=44  Identities=27%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55677788888888888888888888888888888888888776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.8e-12  Score=73.91  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44567777777777777777777777777777777777777765

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.3e-12  Score=74.28  Aligned_cols=44  Identities=23%  Similarity=0.426  Sum_probs=33.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55567777777777777777777777777777777777777765

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.6e-12  Score=74.01  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777888888888888888888888888888888888766

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.5e-12  Score=74.13  Aligned_cols=44  Identities=20%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            55567777777777777777777777777777777777777765

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.7e-12  Score=73.96  Aligned_cols=44  Identities=27%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            55667788888888888888888888888888888888888776

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.1e-12  Score=73.70  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667788888888888888888888888888888888888776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.1e-12  Score=73.68  Aligned_cols=44  Identities=23%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777788888888888888888888888888888887766

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.8e-12  Score=73.31  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45567777777777777777777777777777777777777766

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-12  Score=74.34  Aligned_cols=44  Identities=27%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55677788888888888888888888888888888888888776

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=1.3e-11  Score=73.72  Aligned_cols=46  Identities=24%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHh-hccCCCCCcCCCCcccccc
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMA-VHSGVRKLTTGPIKTEQTF  183 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~c~~c~~~~~~  183 (263)
                      |.++++|.|..|++.|.+...|.+|++ +|.++++|.|..|++.|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            566778888888888888888888876 7888888888888888765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.3e-12  Score=73.59  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45567777777777777777777777777777777777777765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=4.1e-12  Score=73.18  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566777777777777777777777777777777777777665

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.18  E-value=5e-12  Score=72.80  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+...|.+|+++|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45567788888888888888888888888888888888888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.3e-12  Score=73.07  Aligned_cols=44  Identities=23%  Similarity=0.444  Sum_probs=35.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888764

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.7e-12  Score=73.96  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=37.2

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.9e-12  Score=72.50  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=34.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHh-hccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|...+.|.+|++ +|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4566777888888888888888888888888 8888888888766

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.9e-12  Score=72.86  Aligned_cols=44  Identities=27%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34556677777777777777777777777777777777777665

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7e-12  Score=72.18  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=33.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      |+++|.++++|.|..|++.|.....|.+|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45567777778888888888888888888777777777777654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=3.6e-11  Score=76.44  Aligned_cols=53  Identities=23%  Similarity=0.537  Sum_probs=29.1

Q ss_pred             CcccCC--cCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318         84 IRHPCS--ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus        84 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      ++|.|+  .|++.|.....|..|++.|.++++|.|.+|+  +.|...+.|..|+++|
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~--~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM--RNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTC--CEESCHHHHHHHHTTC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCC--chhCCHHHHHHHHHhc
Confidence            455554  3555555555555555555555555555555  5555555555555544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.14  E-value=2.7e-11  Score=76.88  Aligned_cols=51  Identities=22%  Similarity=0.408  Sum_probs=37.8

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHH
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHRGIRFQCNK--CFRAYKLKKDLLAHTML   79 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~   79 (263)
                      +|.|.+  |++.|.....|..|++.|.++++|.|.+  |++.|.....|..|++.
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            677777  7777777777777777777777777754  77777777777777644

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.13  E-value=1.1e-11  Score=69.87  Aligned_cols=42  Identities=21%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            345677778888888888888888888888888888888774

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.13  E-value=4.4e-11  Score=75.86  Aligned_cols=55  Identities=24%  Similarity=0.599  Sum_probs=38.3

Q ss_pred             CCccccCCC--CCCCcccCCHHHHHHHHHHhCCCCCccCCc--chhhhcChHHHHHHHhhc
Q psy11318        110 KAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       110 ~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (263)
                      ..++|.|..  |+  +.|.....|..|+++|.++++|.|.+  |++.|.....|.+|+++|
T Consensus        14 ~~~~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCG--KTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTC--CEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCc--cccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            445667766  66  77777777777777777777777754  777777777777776654

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=69.41  Aligned_cols=41  Identities=20%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             HHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        135 MKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       135 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      +++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45567777777777777777777777777777777777764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.11  E-value=1.7e-12  Score=79.95  Aligned_cols=57  Identities=11%  Similarity=0.082  Sum_probs=44.9

Q ss_pred             HHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeeecc
Q psy11318        132 RRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHV  191 (263)
Q Consensus       132 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~  191 (263)
                      ..|+++|.++++|.|..|++.|...+.|.   ++|.++++|.|..|++.|....++..+.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            34667788888888888888888887776   6788888888888888888777766543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=70.64  Aligned_cols=43  Identities=26%  Similarity=0.516  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5567778888888888888888888888888888888888863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.11  E-value=1.3e-11  Score=70.96  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777788888888888888888888888888888887753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=70.32  Aligned_cols=43  Identities=30%  Similarity=0.525  Sum_probs=35.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567788888888888888888888888888888888888863

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=70.50  Aligned_cols=43  Identities=19%  Similarity=0.459  Sum_probs=34.1

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+...|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777888888888888888888888888888888888763

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=70.76  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=34.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567788888888888888888888888888888888888863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2e-11  Score=70.16  Aligned_cols=43  Identities=26%  Similarity=0.464  Sum_probs=34.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566778888888888888888888888888888888888863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=70.43  Aligned_cols=43  Identities=26%  Similarity=0.499  Sum_probs=34.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5566778888888888888888888888888888888888863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.1e-11  Score=70.12  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5567778888888888888888888888888888888888863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.4e-11  Score=70.82  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=4.9e-11  Score=68.19  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCc
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIK  178 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~  178 (263)
                      .|.++++|.|..|++.|...+.|.+|+++|+++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            366777788888888888888888888888888888887775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=70.15  Aligned_cols=42  Identities=31%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677777888888888888888888888888888887775

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.9e-11  Score=70.31  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+...|.+|+++|+++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4566788888888888888888888888888888888888863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.7e-11  Score=70.54  Aligned_cols=43  Identities=28%  Similarity=0.418  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556777777788778888887777888877777777777753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.9e-11  Score=70.31  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            5566778888888888888888888888888888888888763

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=5e-11  Score=69.21  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=35.3

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcc
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKT  179 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~  179 (263)
                      +.++++|.|..|++.|.+...|.+|+++|+++++|.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            566788888888888888888888888888888888888875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.7e-11  Score=70.49  Aligned_cols=43  Identities=26%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777778888888888888888888888888777777753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=70.09  Aligned_cols=42  Identities=24%  Similarity=0.460  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556777888888888888888888888888888888888885

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=70.09  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5566778888888888888888888888888888888888763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.9e-11  Score=70.25  Aligned_cols=43  Identities=21%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566778888888888888888888888888888888888763

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.9e-11  Score=70.28  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      ++|.++++|.|..|++.|.+...|.+|+++|+++++|.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            457778888888888888888888888888888888888776

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2e-11  Score=70.15  Aligned_cols=43  Identities=28%  Similarity=0.472  Sum_probs=35.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5567788888888888888888888888888888888888863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.8e-11  Score=70.38  Aligned_cols=43  Identities=28%  Similarity=0.541  Sum_probs=32.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5566777777777777777777777777777777777777753

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.5e-11  Score=68.64  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECG--KSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTT--BCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCC--CccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666677777776  667777777777777777777777665

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=69.76  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556677777777777777777777777777777777777753

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.07  E-value=5.7e-11  Score=68.26  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECG--KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSC--CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666777666  667777777777766666666766655

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2e-11  Score=70.22  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556677777788888888888888888888888777777775

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.7e-11  Score=68.56  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECG--KSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSC--CEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCC--hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55566667777777777  777777777777777777777777665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=69.04  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            556677777888888888888888888888888877777774

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=4.2e-11  Score=68.08  Aligned_cols=44  Identities=18%  Similarity=0.181  Sum_probs=29.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCE--KAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSS--CEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCC--cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455666666676666  667777777777666666666666655

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=69.98  Aligned_cols=43  Identities=23%  Similarity=0.481  Sum_probs=34.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|.....|.+|+++|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567778888888888888888888888888888888888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.1e-11  Score=69.34  Aligned_cols=42  Identities=24%  Similarity=0.504  Sum_probs=33.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566777888888888888888888888888888888888774

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=69.23  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      ++|.++++|.|..|++.|.+...|.+|+++|+++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456777888888888888888888888888888888888776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6.2e-11  Score=68.05  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCG--KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSC--CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccC--hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666777666  667777777777666666666766665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6.1e-11  Score=68.11  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICG--KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSC--CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666777777777  677777777777777777777777665

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.6e-11  Score=68.63  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCG--KAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSC--CEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcC--CccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            55566667777777777  777777777777777777777777665

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.7e-11  Score=68.89  Aligned_cols=42  Identities=29%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            455677777777777777777777777777777777777763

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.3e-11  Score=68.39  Aligned_cols=44  Identities=23%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECG--KAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSC--CEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCC--cccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566667777777777  777777777777777777777777665

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.9e-11  Score=68.53  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|..|+  +.|.+.+.|..|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECG--KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTC--CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCC--CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            45556666677777777  667777777777777777777777665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.06  E-value=1.3e-11  Score=73.63  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             cccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCc
Q psy11318        123 KDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLT  173 (263)
Q Consensus       123 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  173 (263)
                      +.|.....|..|+++|.++++|.|..|++.|...+.|.+|+++|+++++|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            566677777777888888888888888888888888888888888777763

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5e-11  Score=68.48  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECG--KVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTT--EECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcC--hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566667777777777  777777777777777777777777665

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-11  Score=68.47  Aligned_cols=41  Identities=29%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            45667788888888888888888888888888888888876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.9e-11  Score=68.18  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECG--KAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSC--CEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCC--CeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            55566677777777777  777777777777777777777777665

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.8e-11  Score=68.09  Aligned_cols=41  Identities=20%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            44567788888888888888888888888888888888776

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.8e-11  Score=68.87  Aligned_cols=42  Identities=17%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            556777888888888888888888888888888888888874

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.6e-11  Score=67.70  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECG--KAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSC--CEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCC--hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666667777777777  777777777777777777777777655

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.8e-11  Score=68.57  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=28.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECG--KAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSC--CEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.7e-11  Score=68.23  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCG--KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTC--CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCC--ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666677777777  667777777777777777777777665

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.9e-11  Score=68.18  Aligned_cols=44  Identities=25%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECG--KAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSC--CBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccC--hhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666667777776  667777777777766766777776665

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.6e-11  Score=68.64  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|++|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECG--KVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSC--CEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCC--chhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            55566677777777777  777777777777777777777777665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.5e-11  Score=67.98  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|++|+  +.|.+...|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCG--KAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSC--CEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCC--hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55566666677777777  667777777777777777777777665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.05  E-value=5.2e-11  Score=68.40  Aligned_cols=44  Identities=18%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECD--MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSC--CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCC--cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.1e-11  Score=68.09  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECG--KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTC--CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCC--CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666667777666  667777777777666666666766665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.2e-11  Score=68.41  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCG--KAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTC--CEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCC--chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.05  E-value=4.7e-11  Score=68.59  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECG--KGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSC--CCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccC--cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666777777777  677777777777777777777777665

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.9e-11  Score=69.51  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            455667777777777777777777777777777777777775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.4e-11  Score=68.03  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECG--KAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTT--BCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555566666666666  666666666666666666666666655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5.2e-11  Score=68.41  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECG--KNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSC--CEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccC--cccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.4e-11  Score=68.01  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECG--KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTC--CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.2e-11  Score=68.10  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCG--KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSC--CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccC--chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44555666666666666  666666666666666666666666655

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.9e-11  Score=68.94  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+...|.+|+++|+++++|.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445678888888888888888888888888888888888886

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.8e-11  Score=67.91  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=29.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICG--KSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSC--CEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCC--cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666667777776  667777777777766766677776655

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.6e-11  Score=69.06  Aligned_cols=42  Identities=29%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556778888888888888888888888888888888888885

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5.3e-11  Score=68.38  Aligned_cols=44  Identities=23%  Similarity=0.306  Sum_probs=29.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECG--KAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSC--CEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCC--chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666676666  667777777777666666666666655

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.04  E-value=3.3e-11  Score=67.77  Aligned_cols=41  Identities=22%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34556677777777777777777777777777777777766

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.04  E-value=4.6e-11  Score=68.62  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCA--KTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSS--CEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCC--chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55566666777777777  677777777777777777777777665

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.9e-11  Score=68.23  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            556677788888888888888888888888888888888774

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.2e-11  Score=67.79  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|..|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECG--KVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSC--CEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCC--CccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666655

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.04  E-value=6.5e-11  Score=67.99  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECG--KVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSC--CEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCc--chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666676666  667777777777666666666766655

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.2e-11  Score=68.08  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECG--KVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTC--CEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666777777777  677777777777777777777777665

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=5.4e-11  Score=68.36  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECG--RGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSC--CEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCC--CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666777777777  677777777777777777777777665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.8e-11  Score=69.57  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456677777888888888888888888888888877887775

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=5.8e-11  Score=68.21  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECG--KGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSC--CEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCcc--chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666777777777  677777777777777777777777665

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.5e-11  Score=69.19  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccC-CCCCcCCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG-VRKLTTGP  176 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~c~~  176 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|++ +++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678888888998899999988889999888888 88888863

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=8.8e-11  Score=67.43  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECG--EIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTC--CEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccC--hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566667777777777  777777777777777777777777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=8.2e-11  Score=67.55  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECG--KGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSC--CEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCC--CcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666777777777  677777777777777777777777665

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.5e-11  Score=68.31  Aligned_cols=41  Identities=22%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            34566777777777777777777777777777777777766

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.03  E-value=6.3e-11  Score=68.03  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECG--KSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSC--CEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccc--cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666677777777  667777777777777777777777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.6e-11  Score=67.70  Aligned_cols=44  Identities=25%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 h~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECG--KTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTT--EEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCC--cccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45566677777777777  777777777777777777777777665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.8e-11  Score=67.89  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECG--KRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTT--EEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCC--cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666677777777777  777777777777777777777777765

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=6.6e-11  Score=67.93  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECG--KNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTC--CEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcC--cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55566677777777777  777777777777777777777777665

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.9e-11  Score=68.18  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCG--KGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTT--EEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCC--CccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            45566677777777777  777777777777777777777777765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=6.9e-11  Score=67.86  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECG--KAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSC--CEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCC--CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666777777777  777777777777777777777777665

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=6.1e-11  Score=67.42  Aligned_cols=42  Identities=26%  Similarity=0.448  Sum_probs=29.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            344566677777777777777777777777777777777663

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=1.9e-10  Score=68.45  Aligned_cols=46  Identities=20%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHH-HhCCCCCccCCcchhhhcC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCTQCSKFYIQ  155 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  155 (263)
                      +.++++|.|.+|+  +.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~--k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCG--KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSC--CEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCC--cccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3456677777777  77777777777775 6777777777777777754

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=67.13  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCE--KSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSS--CEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCC--cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34555666666676666  666666677777666666666666655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.6e-11  Score=67.28  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECG--KGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSC--CEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccC--chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34555666666666666  666666666666666666666666655

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=6.6e-11  Score=67.27  Aligned_cols=42  Identities=31%  Similarity=0.506  Sum_probs=33.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            556777888888888888888888888888888888887763

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.9e-11  Score=68.76  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=34.9

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|.+.+.|.+|+++|+++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566778888888888888888888888888888888888874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=5.3e-11  Score=68.36  Aligned_cols=44  Identities=27%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECG--KVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSC--CEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCC--chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556666666666666  666666666666666666666666655

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=65.19  Aligned_cols=40  Identities=13%  Similarity=0.236  Sum_probs=31.1

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      +|.++++|.|..|++.|...+.|.+|+++|+++++|.|.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            4667778888888888888888888888888888887753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.5e-11  Score=69.14  Aligned_cols=42  Identities=14%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556677888888888888888888888888888888888875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.2e-10  Score=66.88  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|..|+  +.|.+.+.|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECG--KAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSC--CEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCC--chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666  666666666666666666666666643

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=66.79  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHH-HhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|++ +|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECG--KAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSC--CCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccC--chhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            45566666777777777  67777777777776 6777777777665

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=5.1e-11  Score=68.43  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECG--KSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTC--CEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCC--cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666676666  666666667777666666666766665

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.1e-10  Score=65.80  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECG--KAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSC--CEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCC--chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666677777777  667777777777777777777776643

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=65.62  Aligned_cols=40  Identities=23%  Similarity=0.599  Sum_probs=31.2

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      ++|.++++|.|..|++.|.+...|.+|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3567777888888888888888888888888888888775

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.1e-10  Score=67.58  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=34.9

Q ss_pred             HHHhCCCCCccCC--cchhhhcChHHHHHHHhhccCCCCCcCCCC
Q psy11318        135 MKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSGVRKLTTGPI  177 (263)
Q Consensus       135 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c  177 (263)
                      .++|.++++|.|.  .|++.|...+.|.+|+++|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3457788888887  788888888888888888888888888776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.3e-10  Score=63.86  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      +|.++++|.|..|++.|...+.|.+|+++|+++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            57788888888888888888888888888888888876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.4e-10  Score=65.19  Aligned_cols=41  Identities=22%  Similarity=0.484  Sum_probs=33.2

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP  176 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~  176 (263)
                      ++|.++++|.|..|++.|.....|.+|+++|+++++|.|.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            35777888888888888888888888888888888888853

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.93  E-value=3.3e-10  Score=63.54  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECG--KAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSC--CEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcC--hhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34556667777777777  7777777777777777777777763

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.7e-10  Score=62.54  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECK--ETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTC--CBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCC--CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34556666777777777  7777777777777777777777663

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.92  E-value=1.8e-11  Score=75.32  Aligned_cols=54  Identities=13%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHH
Q psy11318        102 KNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLM  160 (263)
Q Consensus       102 ~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  160 (263)
                      ..|++.|.++++|.|+.|+  +.|.....|.   ++|.++++|.|..|++.|....++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~--k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCS--STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSC--CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCC--chhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            4567778888899999998  8888888776   7788889999999999888766543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=4.3e-10  Score=64.46  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECG--KAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSC--CEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCC--CccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45556666677777777  6677777777777777777777665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=8.7e-10  Score=62.82  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=26.3

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcch
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS  150 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  150 (263)
                      |.++++|.|.+|+  +.|.....|..|+++|+++++|.|+.||
T Consensus         5 h~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCG--LRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTT--EECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCC--cccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4456666666666  6666666666666666666666666664

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.6e-10  Score=63.96  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECR--KTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSC--CCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcC--chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556666777777777  7777777777777777777777765

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.90  E-value=5e-10  Score=64.19  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=27.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECG--KSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSS--CEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44556666666666666  6666666666666666666666665

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.3e-10  Score=63.47  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=27.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECK--KTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTC--CBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccC--cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44556666666666666  6666666666666666666666665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.6e-10  Score=63.94  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=28.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECG--KAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSC--CEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccC--ChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            45556666677777777  6677777777777777777777665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.6e-10  Score=63.95  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECG--KVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTC--CBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44556666666666666  6666666666666666666666665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.89  E-value=3.1e-10  Score=67.52  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=36.9

Q ss_pred             CcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCc
Q psy11318         93 KTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY  144 (263)
Q Consensus        93 ~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~  144 (263)
                      +.|.....|..|++.|.++++|.|..|+  +.|...+.|..|+++|+++++|
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICY--AVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTC--CEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCC--cccCCHHHHHHHHHHhccCCCC
Confidence            4556666677777777777777777777  7777777777777777777766

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.2e-10  Score=64.49  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=27.3

Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      +.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCH--KSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSC--CEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccC--cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345566666666666  666666666666666666666666655

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.1e-10  Score=64.12  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECG--KVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSC--CBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCC--cccCCHHHHHHHHHhhCCCCCCCCC
Confidence            44555666666666666  6666666666666666666666665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.6e-10  Score=63.92  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=27.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECG--KAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTC--CEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCC--CCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            45555666666666666  6666666666666666666666664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.9e-10  Score=63.85  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECG--KAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSC--CCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCC--cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45556666666666666  6666666677776666666666665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.5e-10  Score=63.66  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=27.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCS--KAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSC--CEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555666666666666  6666666666666666666666664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.3e-10  Score=63.75  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|.+.+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECG--KRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSC--CCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCC--cccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45556666677777777  6677777777777777777777665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=63.43  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCG--KSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSC--CCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCC--chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555666666666666  6666666666666666666666664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.7e-10  Score=63.92  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECG--KVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSC--CCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCC--cccCChhHHHHHhHhcCCCCCCCCC
Confidence            44555566666666666  6666666666666666666666664

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.1e-10  Score=64.16  Aligned_cols=41  Identities=24%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      .|.++++|.|.+|+  +.|.+...|..|+++|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECG--KSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSC--CCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCC--cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455556666665  556666666666655655566665554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=62.77  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQ--KAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTC--CEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCC--cccCCHhHHHHHHHHhCCCCCCCCC
Confidence            55566677777777777  7777777777777777777777763

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.3e-10  Score=64.08  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECG--KAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSC--CEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556666677777776  6677777777777777777777665

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.9e-10  Score=63.87  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCG--KAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTT--EEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccC--hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45566666777777777  7777777777777777777777765

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.5e-10  Score=62.98  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=29.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECG--KAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTC--CCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCC--CccCCHHHHHHHhhhcCCCCCCCCC
Confidence            45566667777777777  7777777777777777777777663

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=7.7e-10  Score=64.04  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=24.7

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcch
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS  150 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  150 (263)
                      .++++|.|.+|+  +.|.....|..|+++|+++++|.|.+|+
T Consensus         8 ~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            8 RTRKQVACEICG--KIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCSEEETTTT--EEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCcCeeCCCCC--cccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            345566666666  6666666666666666666666666665

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.7e-10  Score=63.64  Aligned_cols=42  Identities=19%  Similarity=0.327  Sum_probs=27.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCG--KEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSC--CBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCC--cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44555666666666666  6666666666666666666666664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.9e-10  Score=63.88  Aligned_cols=42  Identities=17%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.+...|..|+++|+++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCG--KAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSC--CBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCC--cccCcHHHHHHHHHhcCCCCCCCCC
Confidence            44556666666777666  6677777777776666666666665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.2e-10  Score=63.74  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|.+...|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQ--KAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSC--CEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555566666666666  6666666666666666666666664

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.3e-10  Score=63.45  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECG--KAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSC--CEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCC--cccCCHHHHHHHHhHhCCCCCCCCC
Confidence            45556666666666666  6666666666666666666666664

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.6e-10  Score=63.40  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCG--KAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSC--CEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccC--CccCCHhHHHHHHHHcCCCCCCCCC
Confidence            55566667777777777  7777777777777777777777765

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.3e-10  Score=63.47  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=27.5

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECG--KAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTT--CCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCC--hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556666666666666  6666666666666666666666664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.7e-10  Score=63.60  Aligned_cols=42  Identities=29%  Similarity=0.435  Sum_probs=28.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECG--KSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSC--CEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCC--hhhCChHHHHHHHHhcCCCCCcCCC
Confidence            45556666666666666  6666666676776666666666665

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6e-10  Score=63.16  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECG--KVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTT--EECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCC--CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            55566677777777777  7777777777777777777777763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.84  E-value=1.1e-09  Score=61.33  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~--k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCG--KSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSC--CEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCC--cccCCHHHHHHHhhhcCCCCCCCC
Confidence            44556677777777777  777777777777777777777766

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.7e-10  Score=63.12  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECG--KAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSC--CEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCC--CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44556666666666666  6666666666666666666666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=9.9e-10  Score=62.24  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|..|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQ--ATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTC--CEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCC--CccCCHHHHHHHHHHcCCCCCcCCC
Confidence            55566677777777777  7777777777777777777777763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=8.3e-10  Score=61.87  Aligned_cols=41  Identities=15%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|.+|+  +.|.+.+.|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICG--TRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSC--CCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCC--CccCCHHHHHHHHHhcCCCCCCCC
Confidence            44556677777777777  777777777777777777777766

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=6e-10  Score=62.42  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=28.1

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCG--KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTT--CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCcc--chhCCHHHHHHHHHHhCCCCCCCC
Confidence            45556666777777777  667777777777777777777665

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-09  Score=61.22  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECG--KIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTC--CCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCC--cccCCHHHHHHHHHHHCCCCCCCCC
Confidence            34556666677777777  6677777777777777777777663

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=8.7e-10  Score=62.47  Aligned_cols=42  Identities=12%  Similarity=0.200  Sum_probs=29.7

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCD--RVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSS--CEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCC--chhCCHHHHHHHhHhcCCCCCCCCC
Confidence            55566677777777777  7777777777777777777777763

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=8e-10  Score=61.93  Aligned_cols=41  Identities=17%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|..|+  +.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCG--ARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTC--CEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcC--hhhCCHHHHHHHHHHcCCCCCCCC
Confidence            44556667777777777  777777777777777777777765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=3.6e-10  Score=74.44  Aligned_cols=57  Identities=12%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccceeeeccCCCcc
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRHVGFPMK  196 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~  196 (263)
                      ++|.++++|.|..|++.|...+.|.+|+++|+++++|.|..|.    ....|..|.+.|..
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            4578889999999999999999999999999999999987654    56666667666554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.6e-10  Score=62.96  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=24.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECG--KGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSC--CCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCC--cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44455555566666666  5566666666666666666666554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.1e-09  Score=62.65  Aligned_cols=42  Identities=21%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCG--KAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTT--EECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCC--hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556666677777777  6677777777777777777777664

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.2e-09  Score=62.54  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         3 h~~~h~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCR--KAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTC--CBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcC--chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455666667777776  6677777777777667666666664

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.79  E-value=2.6e-09  Score=58.76  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCCCCCcC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTT  174 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c  174 (263)
                      |.++++|.|..|++.|...+.|..|+++|+++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567778888888888888888888888887777765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.8e-10  Score=73.56  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        101 LKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       101 l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |..|++.+.+++++.|..|+  ..| ....|..|+ .+.+++++.|..|++.|. ...|..|+++|.++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~--~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCD--LEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSC--CEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccC--hHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            34455555666666666666  556 366666666 566666666666666655 35666666666553

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=9.3e-10  Score=63.01  Aligned_cols=42  Identities=17%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECG--MNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSC--CEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccC--hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555566666666666  6666666666666666666666664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.6e-09  Score=60.50  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=25.4

Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      +.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCG--KFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSC--CCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCC--CeeCChHHHHHHHHHhCCCCCCCCC
Confidence            345556666666666  6666666666666666666666664

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=7.1e-09  Score=58.31  Aligned_cols=38  Identities=21%  Similarity=0.349  Sum_probs=24.5

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |.++++|.|..|+  +.|.....|..|+++|+++++|.|.
T Consensus         5 h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECD--CRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSC--CCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCCC--CeeCChHHHHHHHHhhCCCCCccCC
Confidence            4556666666666  6666666666666666666666664

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.9e-09  Score=60.29  Aligned_cols=41  Identities=24%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|.+|+  +.|...+.|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECG--KAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSC--CEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCC--cccCchHHHHHHHhHhcCCCCCCC
Confidence            45566666777777777  677777777777777777776665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.8e-09  Score=61.53  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             HHhcCCccccCC--CCCCCcccCCHHHHHHHHHHhCCCCCccCCcc
Q psy11318        106 LKIHKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC  149 (263)
Q Consensus       106 ~~~~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C  149 (263)
                      +.|.++++|.|.  .|+  +.|.....|..|+++|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCG--WRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCC--CEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCC--CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345566667776  666  667777777777777777777777655

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=1.7e-09  Score=61.91  Aligned_cols=42  Identities=21%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCC-CCCccCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN-GKRYHCT  147 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~-~~~~~C~  147 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|.+ +++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCE--KTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSC--CEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCC--CcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44556666667777776  667777777777766666 6666664

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.2e-09  Score=61.81  Aligned_cols=41  Identities=27%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |++.|.++++|.|.+|+  +.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECG--KAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTT--EEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccC--cccCCHHHHHHHHHHhCCCCCCCC
Confidence            45556666677777776  667777777777777777666666

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=6.9e-09  Score=63.49  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=32.3

Q ss_pred             hCCCCCccCCc--chhhhcChHHHHHHH-hhccCCCCCcCCC
Q psy11318        138 HFNGKRYHCTQ--CSKFYIQESDLMEHM-AVHSGVRKLTTGP  176 (263)
Q Consensus       138 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~c~~  176 (263)
                      ..+++||+|.+  |++.|.+.++|.+|+ ++|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46888999965  999999999999997 6899999888854

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.7e-09  Score=60.69  Aligned_cols=39  Identities=21%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      .|.++++|.|.+|+  +.|.....|..|+++|.++++|.|.
T Consensus         6 ~h~~~k~~~C~~C~--k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCG--KSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTT--EEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCC--CccCChHHHHHHHHHhCCCCCCCCC
Confidence            45566667777776  6677777777777777777777665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.71  E-value=3.2e-09  Score=57.58  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      |+++|.++++|.|..|++.|...+.|.+|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            45567777788888888888888888888777765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=3e-09  Score=57.69  Aligned_cols=35  Identities=17%  Similarity=0.404  Sum_probs=27.5

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCCCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      +|.++++|.|..|++.|...+.|.+|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            46777888888888888888888888888877653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8.1e-09  Score=57.36  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=25.3

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      |.++++|.|.+|+  +.|.....|..|+++|+++++|.|
T Consensus         5 h~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECG--KSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSC--CEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCC--CCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4566667777776  667777777777777777666665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.67  E-value=7.8e-09  Score=55.15  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCCCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      |.++++|.|..|++.|...+.|.+|+++|+++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677788888888888888888888888877653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.67  E-value=8.1e-09  Score=55.13  Aligned_cols=34  Identities=15%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCCCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      |.++++|.|..|++.|...+.|.+|+++|+++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5677888888888888888888888888877653

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.62  E-value=1.9e-08  Score=52.99  Aligned_cols=32  Identities=19%  Similarity=0.582  Sum_probs=21.9

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCCCc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLT  173 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  173 (263)
                      ++|.|..|++.|...+.|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            35667777777777777777777777766654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.6e-08  Score=55.02  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             hCCCCCccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        138 HFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       138 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +++++||+|.+  |++.|.+.+.|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46778888875  888888888888888888764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.7e-09  Score=69.00  Aligned_cols=60  Identities=23%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             HHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCC
Q psy11318         76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN  140 (263)
Q Consensus        76 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~  140 (263)
                      |+..+.+.+++.|..|++.|. ...|..|+ .+.+++++.|+.|+  +.|. ...|..|++++.+
T Consensus         8 H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~--~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            8 HEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCG--RNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSC--CEEE-TTGGGTHHHHBTT
T ss_pred             hCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCC--CcCc-HHHHHHHHHHccC
Confidence            333344444455555554442 44455554 44455555555554  4433 2444555544443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=1.1e-09  Score=72.00  Aligned_cols=57  Identities=16%  Similarity=0.337  Sum_probs=41.1

Q ss_pred             HHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       106 ~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      +.|.++++|.|..|+  +.|.....|..|+++|+++++|.|..|.    ....|..|.+.|.+
T Consensus        18 ~~H~~~kpy~C~~C~--k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCD--SKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSC--CEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCC--CEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            446677788888888  7788888888888888888888876654    44455666666665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.53  E-value=3.2e-08  Score=53.81  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             hCCCCCccCC--cchhhhcChHHHHHHHhhccCCCCC
Q psy11318        138 HFNGKRYHCT--QCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       138 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      |.++++|.|.  .|++.|...+.|.+|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567778887  4888888888888888887777765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.8e-08  Score=52.74  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=25.7

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +|.++++|.|..|++.|.....|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            366777888888888888888888888887765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=4.5e-08  Score=52.51  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      .|.++++|.|..|++.|...+.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            366778888888888888888888888887764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.50  E-value=1e-07  Score=52.15  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC  146 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C  146 (263)
                      .++++|.|..|+  +.|...+.|..|+++|.++++|.+
T Consensus         2 ~~~k~~~C~~C~--k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCK--REFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTC--CEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCC--cccCCHHHHHHHHHHcCCCcccee
Confidence            345666666666  666666666666666666666654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.6e-08  Score=53.82  Aligned_cols=33  Identities=30%  Similarity=0.696  Sum_probs=27.0

Q ss_pred             HhCCCCCccCCcchhhhcCh-HHHHHHHhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQE-SDLMEHMAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~  169 (263)
                      +|.++++|.|..|++.|... +.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            46778888888888888888 8888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=5.4e-08  Score=52.18  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=25.8

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      .|.++++|.|..|++.|...+.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            356778888888888888888888888887764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.46  E-value=8e-08  Score=51.45  Aligned_cols=22  Identities=36%  Similarity=0.748  Sum_probs=12.1

Q ss_pred             CCccccccccccCChHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHM   22 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~   22 (263)
                      |||+|++||+.|.....|.+|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            3555555555555555555555

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=9.4e-08  Score=51.14  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |.++++|.|..|++.|.....|.+|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            55667777777777777777777777777654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=51.70  Aligned_cols=26  Identities=15%  Similarity=0.285  Sum_probs=15.1

Q ss_pred             ccccCC--CccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEE--CPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~--C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ||+|++  |++.|.....|++|+++|.+
T Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            9 LLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            566654  66666666666666655544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=3e-08  Score=53.63  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=25.0

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHH-HhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEH-MAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~  169 (263)
                      +|.++++|.|..|++.|...+.|.+| ++.|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            46777788888888888888888888 7777653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=9.2e-08  Score=51.22  Aligned_cols=32  Identities=25%  Similarity=0.589  Sum_probs=23.6

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |.++++|.|..|++.|.....|.+|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            55667777777777777777777777777654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.43  E-value=6.8e-08  Score=55.63  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHh-hccCCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSGVR  170 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  170 (263)
                      +|+++++|.|..|++.|.....|.+|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3677888888888888888888888888 777654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.41  E-value=2e-07  Score=57.29  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=14.9

Q ss_pred             CccccccccccCChHHHHHHHHhhCCcccccC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCE   33 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~   33 (263)
                      +|+|.+|++.|.....|..|+++|++....+.
T Consensus        13 py~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~   44 (66)
T 2epp_A           13 ILPCGLCGKVFTDANRLRQHEAQHGVTSLQLG   44 (66)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCC
T ss_pred             CcCCCCCCCccCCHHHHHhhhhhhCCCccccc
Confidence            44444444444444444444444444433333

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.40  E-value=3.3e-07  Score=56.09  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             cCCccccCCC--CCCCcccCCHHHHHHHH-HHhCCCCCccCCc
Q psy11318        109 HKAVLYQCNE--CSTSKDYLTKRDLRRHM-KLHFNGKRYHCTQ  148 (263)
Q Consensus       109 ~~~~~~~C~~--C~~~~~f~~~~~l~~H~-~~h~~~~~~~C~~  148 (263)
                      .+++||+|..  |+  ++|...+.|..|+ ++|++++||.|..
T Consensus        23 sGEKPYkC~~~~Cg--KaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCF--AAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCC--CBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCcC--hhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            4677788854  77  7788888888886 5777777777754

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.4e-07  Score=47.25  Aligned_cols=27  Identities=37%  Similarity=0.838  Sum_probs=20.1

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|++|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            467777777777777777777777654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.6e-07  Score=46.67  Aligned_cols=26  Identities=19%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      ++|.|++||+.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            46777777777777777777777663

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.39  E-value=2e-08  Score=52.44  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=25.6

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      ++|.|..|++.|...+.|.+|+++|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4688888888888888888888888887775

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.39  E-value=8e-08  Score=51.44  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=19.9

Q ss_pred             CCCCCccCCcchhhhcChHHHHHHH
Q psy11318        139 FNGKRYHCTQCSKFYIQESDLMEHM  163 (263)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~  163 (263)
                      .+++||.|..|++.|.+.++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            5677888888888888888888887

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.39  E-value=1.4e-07  Score=47.63  Aligned_cols=27  Identities=30%  Similarity=0.719  Sum_probs=20.1

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |+|.|++|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            567777777777777777777777765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.2e-07  Score=47.15  Aligned_cols=26  Identities=23%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      ++|.|++||+.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            57888888888888888888887763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.38  E-value=2.6e-07  Score=46.54  Aligned_cols=27  Identities=22%  Similarity=0.730  Sum_probs=19.0

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|++|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            467777777777777777777777665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.37  E-value=1.6e-07  Score=50.54  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=21.3

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN  140 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~  140 (263)
                      |++.|.++++|.|+.|+  +.|.....|..|+++|.+
T Consensus         2 H~~~h~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCD--RSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTC--CCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCC--cccCcHHHHHHHHHHhcc
Confidence            44555566666666666  666666666666666554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.36  E-value=4.7e-07  Score=47.42  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=18.1

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHhCCCCCcc
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYH  145 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~  145 (263)
                      +|.|.+|+  +.|...+.|..|+++|+++++|.
T Consensus         2 p~~C~~C~--k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECP--KRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSC--CCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCC--chhCCHHHHHHHHHHhCCCCCCC
Confidence            45566665  55666666666666666555553

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.6e-07  Score=50.61  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK  142 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~  142 (263)
                      |.++++|.|..|+  +.|...+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~--k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            4 GSSGRSYSCPVCE--KSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCEETTTT--EECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCcCCCCCC--CccCCHHHHHHHHHHHcCCC
Confidence            4455566666666  56666666666666665554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.32  E-value=3.3e-07  Score=45.38  Aligned_cols=26  Identities=35%  Similarity=0.855  Sum_probs=18.7

Q ss_pred             CccccccccccCChHHHHHHHHhhCC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      +|.|.+|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            47777777777777777777777765

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.32  E-value=2e-07  Score=50.26  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             hCCCCCccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        138 HFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       138 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |.++++|.|.+  |++.|...+.|.+|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            55677777774  777777777777777777664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=7.3e-08  Score=47.47  Aligned_cols=26  Identities=31%  Similarity=0.705  Sum_probs=19.7

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |+|.|++||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57788888888888778888877663

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=2.7e-07  Score=46.41  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=17.6

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |+|.|++|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            466666666666666666666666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=3.1e-07  Score=46.21  Aligned_cols=27  Identities=33%  Similarity=0.785  Sum_probs=18.5

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|.+|++.|.....|..|+++|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            466777777777777777777766654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.29  E-value=6.8e-07  Score=54.93  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      +.++++|.|..|++.|.+.+.|.+|+++|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            457789999999999999999999999998743

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.28  E-value=4.3e-07  Score=46.04  Aligned_cols=27  Identities=26%  Similarity=0.683  Sum_probs=16.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|.+|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            456666666666666666666666654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.28  E-value=4.9e-07  Score=46.46  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=21.0

Q ss_pred             CCcccc--ccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCN--ACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~--~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|+  .||+.|.....|..|+++|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            577886  788888888888888877776

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.28  E-value=4.7e-07  Score=45.88  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=16.6

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|.+|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHcc
Confidence            456666666666666666666666554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.28  E-value=5.6e-07  Score=47.58  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=18.2

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK  142 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~  142 (263)
                      .++++|.|..|+  +.|...+.|..|+++|++++
T Consensus         3 ~~~k~~~C~~C~--k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            3 SGSSGYVCALCL--KKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCSEECSSSC--CEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCeECCCCc--chhCCHHHHHHHHHHHcCCC
Confidence            345555565555  55666666666655555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=48.14  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=19.5

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |+|.|.+|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            467777777777777777777777665

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.26  E-value=5.8e-07  Score=47.58  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=18.5

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK  142 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~  142 (263)
                      .++++|.|..|+  +.|...+.|..|+++|++++
T Consensus         3 ~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            3 SGKRPFVCRICL--SAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCCSCEECSSSC--CEESSHHHHHHHHGGGTSCC
T ss_pred             CCCcCeeCCCCC--cccCCHHHHHHHHHHcCCCC
Confidence            445556666665  55666666666665555544

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.26  E-value=4e-07  Score=46.18  Aligned_cols=28  Identities=25%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5677777777777777777777776654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.25  E-value=5.1e-07  Score=45.43  Aligned_cols=27  Identities=19%  Similarity=0.587  Sum_probs=17.6

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +|.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666553

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.24  E-value=4.1e-07  Score=45.82  Aligned_cols=28  Identities=21%  Similarity=0.654  Sum_probs=21.7

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4677888888888888888888877764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.22  E-value=5.2e-08  Score=55.84  Aligned_cols=36  Identities=17%  Similarity=0.413  Sum_probs=27.1

Q ss_pred             HHHHhCCCCCccCC--cchhhhcChHHHHHHHhhccCC
Q psy11318        134 HMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       134 H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |...|.++++|.|.  .|++.|...+.|.+|+++|+++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34457778888885  5888888888888888888765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=4.8e-07  Score=45.21  Aligned_cols=28  Identities=29%  Similarity=0.670  Sum_probs=20.9

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      +++|.|..|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3567788888888888888888777753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=3.9e-07  Score=45.26  Aligned_cols=27  Identities=26%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +++|.|..|++.|...+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            357888888888888888888887763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=9.1e-07  Score=45.74  Aligned_cols=27  Identities=30%  Similarity=0.653  Sum_probs=18.9

Q ss_pred             CCcccc--ccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCN--ACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~--~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            467776  677777777777777777665

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.19  E-value=8.6e-07  Score=45.82  Aligned_cols=29  Identities=28%  Similarity=0.710  Sum_probs=22.2

Q ss_pred             CCCccCC--cchhhhcChHHHHHHHhhccCC
Q psy11318        141 GKRYHCT--QCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       141 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +++|.|.  .|++.|...+.|.+|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3577887  6888888888888888887764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=5.8e-07  Score=44.52  Aligned_cols=26  Identities=23%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      ++|.|..|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            56777777777777777777777663

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.18  E-value=7.6e-07  Score=45.08  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      ++|.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            35777777777777777777777776654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.18  E-value=7.4e-07  Score=45.22  Aligned_cols=27  Identities=37%  Similarity=0.854  Sum_probs=19.8

Q ss_pred             CCccccccccccCChHHHHHH-HHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKH-MDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H-~~~h~~   27 (263)
                      ++|.|++|++.|.....|..| +++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            567777777777777777777 566665

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.18  E-value=6.3e-08  Score=50.48  Aligned_cols=28  Identities=36%  Similarity=0.622  Sum_probs=20.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |+|+|++|++.|.....|..|+++|++.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~   28 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIV   28 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccC
Confidence            5677777777777777777777777663

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.17  E-value=8.8e-07  Score=45.44  Aligned_cols=28  Identities=29%  Similarity=0.700  Sum_probs=20.0

Q ss_pred             CCccCC--cchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCT--QCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|.  .|++.|...+.|.+|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            357776  6777777777777777777664

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.16  E-value=1.1e-06  Score=44.18  Aligned_cols=27  Identities=41%  Similarity=0.978  Sum_probs=21.6

Q ss_pred             CCcccc--ccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCN--ACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~--~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            578888  888888888888888887764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=47.09  Aligned_cols=27  Identities=33%  Similarity=0.823  Sum_probs=17.4

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ++|.|++|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            456666666666666666666666654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=1.4e-06  Score=47.06  Aligned_cols=34  Identities=15%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             cCCccccCC--CCCCCcccCCHHHHHHHHHHhCCCCCc
Q psy11318        109 HKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNGKRY  144 (263)
Q Consensus       109 ~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~~~~  144 (263)
                      .++++|.|.  .|+  +.|...+.|..|+++|.++++|
T Consensus         2 ~~~k~~~C~~~~C~--k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCG--QRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTC--CEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCC--cccCCHHHHHHHHHHhCCCCCC
Confidence            345566666  366  6666666666666666665554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=6.7e-07  Score=44.89  Aligned_cols=28  Identities=29%  Similarity=0.575  Sum_probs=20.8

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3677777777777777777777777664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.15  E-value=6.7e-07  Score=44.93  Aligned_cols=27  Identities=30%  Similarity=0.737  Sum_probs=17.9

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            566666666666666666666666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.7e-07  Score=46.62  Aligned_cols=28  Identities=36%  Similarity=0.719  Sum_probs=20.7

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3577777777777777777777777654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.13  E-value=1e-06  Score=43.50  Aligned_cols=26  Identities=31%  Similarity=0.754  Sum_probs=19.1

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      +|.|..|++.|...+.|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46777777777777777777777764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.42  E-value=3.1e-07  Score=46.67  Aligned_cols=28  Identities=29%  Similarity=0.744  Sum_probs=20.9

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|.|..|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5677777777777777777777777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.6e-06  Score=46.17  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=18.2

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |.++++|.|.+|+  +.|...+.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCE--YATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSS--CEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCC--chhCCHHHHHHHHHHhccC
Confidence            3455556666665  5566666666665555543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=3e-06  Score=45.00  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=17.3

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      .++++|.|.+|+  +.|.....|..|+++|+++
T Consensus         5 ~~~~~~~C~~C~--k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            5 SSGKTHLCDMCG--KKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCSSCBCTTTC--CBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCeecCcCC--CCcCchHHHHHHHHHhcCC
Confidence            345555555555  5555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=2.2e-06  Score=45.51  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=16.6

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      .++++|.|..|+  +.|.....|..|+++|.++
T Consensus         5 ~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            5 SSGKPYKCPQCS--YASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCCCSEECSSSS--CEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCC--cccCCHHHHHHHHHHccCC
Confidence            344555555555  5555555555555555443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.3e-06  Score=46.46  Aligned_cols=32  Identities=28%  Similarity=0.590  Sum_probs=18.5

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |.++++|.|.+|+  +.|...+.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICE--RKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSC--CEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCC--CccCCHHHHHHHHHHhcCC
Confidence            3455556666666  5566666666666555543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=3.9e-06  Score=44.58  Aligned_cols=31  Identities=26%  Similarity=0.646  Sum_probs=17.3

Q ss_pred             cCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        109 HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       109 ~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      .++++|.|..|+  +.|.....|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~--k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            5 SSGKIFTCEYCN--KVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             SCCCCEECTTTC--CEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCEECCCCC--ceeCCHHHHHHHHHHhCCC
Confidence            344555555555  5555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=1.5e-06  Score=46.66  Aligned_cols=33  Identities=33%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHH-HHHhCCC
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRH-MKLHFNG  141 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H-~~~h~~~  141 (263)
                      .|.++++|.|..|+  +.|...+.|..| ++.|.++
T Consensus         3 ~H~~~k~~~C~~C~--k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCH--YSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSS--CEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCC--cccCCHHHHHHHHHHHccCc
Confidence            34566666666666  666666666666 5666543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.9e-07  Score=44.02  Aligned_cols=25  Identities=40%  Similarity=0.842  Sum_probs=18.3

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      ++|.|..|++.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3577777777777777777777665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=1.4e-06  Score=46.66  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=16.9

Q ss_pred             hcCCccccCCCCCCCcccCCH-HHHHHHHHHhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTK-RDLRRHMKLHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~-~~l~~H~~~h~~~  141 (263)
                      |.++++|.|..|+  +.|... +.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~--k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCD--FYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSSSS--CEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCCCC--hhhccCHHHHHHHHHhcCCC
Confidence            3445555555555  555555 5555555555443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=2.1e-06  Score=43.48  Aligned_cols=28  Identities=32%  Similarity=0.730  Sum_probs=20.4

Q ss_pred             CCccCCcchhhhcChHHHHHH-HhhccCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEH-MAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H-~~~h~~~  169 (263)
                      ++|.|..|++.|...+.|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            367777788778777777777 5677654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.92  E-value=5.3e-06  Score=47.45  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=17.1

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHH-HhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~-~h~~~  141 (263)
                      |.++++|.|.+|+  +.|.....|..|++ +|.++
T Consensus         2 Ht~~kp~~C~~C~--k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICG--KRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTC--CEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcC--cccCCHHHHHHHhhhhcCCC
Confidence            3445555555555  55555555555555 55544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.90  E-value=8.3e-06  Score=43.63  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=16.3

Q ss_pred             cCCccccCCC--CCCCcccCCHHHHHHHHHHhCCC
Q psy11318        109 HKAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       109 ~~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      .++++|.|.+  |+  +.|...+.|..|+++|+++
T Consensus         4 ~~~k~~~C~~~~C~--k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGCG--KVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTCC--CEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCC--CccCCHHHHHHHHHhcCCC
Confidence            3445555552  55  5555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.87  E-value=2.5e-05  Score=47.60  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             cccCCHHHHHHHH-HHhCCCC------CccCCc--chhhhcChHHHHHHHhhc
Q psy11318        123 KDYLTKRDLRRHM-KLHFNGK------RYHCTQ--CSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       123 ~~f~~~~~l~~H~-~~h~~~~------~~~C~~--C~~~f~~~~~l~~H~~~h  166 (263)
                      +.|.+...|..|+ ..|.+.+      .|.|.+  |++.+.....|..|+++.
T Consensus        11 ~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           11 ESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            6666666666666 3555444      577764  777777777777777764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.81  E-value=6.7e-06  Score=41.06  Aligned_cols=25  Identities=24%  Similarity=0.646  Sum_probs=18.6

Q ss_pred             CccCC--cchhhhcChHHHHHHHhhcc
Q psy11318        143 RYHCT--QCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       143 ~~~C~--~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +|.|.  .|++.|...+.|.+|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            56777  77777777777777777765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.76  E-value=2e-06  Score=49.00  Aligned_cols=35  Identities=20%  Similarity=0.553  Sum_probs=22.4

Q ss_pred             HHHhcCCccccCC--CCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        105 ILKIHKAVLYQCN--ECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       105 ~~~~~~~~~~~C~--~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      +..|.++++|.|.  .|+  +.|...+.|..|+++|+++
T Consensus        10 ~~~H~~~k~~~C~~~~C~--k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCT--KTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SCEEETTTEEECCCTTCC--CEECSSSSHHHHHHHHTTT
T ss_pred             HhccCCCCCeECCCCCCC--CccCCHHHHHHHHHHccCC
Confidence            3445666666664  566  6666666677776666654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0001  Score=44.77  Aligned_cols=45  Identities=20%  Similarity=0.221  Sum_probs=20.5

Q ss_pred             CccccCChhHHHHHHH-HhcCCC------ceecc--cccccccchHHHHHHHHH
Q psy11318         35 CPKDFSTRKYLTQHQN-AIHRGI------RFQCN--KCFRAYKLKKDLLAHTML   79 (263)
Q Consensus        35 C~~~f~~~~~l~~H~~-~~~~~~------~~~C~--~C~~~f~~~~~l~~H~~~   79 (263)
                      |++.|.+...|..|+. .|-+..      .|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            5555555555555553 232222      34443  344444444444444443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.51  E-value=0.00024  Score=52.45  Aligned_cols=75  Identities=16%  Similarity=0.298  Sum_probs=34.9

Q ss_pred             cCCCcCCCHHHHHHHHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318         90 ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus        90 ~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      .|+..+. ...|..|. ..-..++..|+.|+  ..+ ....|..|+...-..+...|+.|+..+.. ..|..|..++.|.
T Consensus        89 GC~~~~~-~~~l~~H~-~~C~~~~v~C~~C~--~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~  162 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQ-AHCEFALMDCPQCQ--RPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLA  162 (170)
T ss_dssp             TCCCEEE-GGGHHHHH-TTCTTSEEECTTTC--CEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC-
T ss_pred             CCCceec-HhHHHHHH-hcCCceeeECCCCC--hHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcCh
Confidence            3444332 23344554 23344445555554  333 44445555554445555555555554432 3455555555554


Q ss_pred             C
Q psy11318        170 R  170 (263)
Q Consensus       170 ~  170 (263)
                      .
T Consensus       163 ~  163 (170)
T 3hcs_A          163 L  163 (170)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.0012  Score=36.40  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=14.8

Q ss_pred             CccccccccccCChHHHHHHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~   23 (263)
                      +|.|+-|+..|.....|+.||.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            5666667766666666666664

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.31  E-value=0.0043  Score=43.19  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             CCccccccccccCChHHHHHHH--HhhCCc--ccccCCC------ccccCChhHHHHHHHHhcCCCceecccccccccch
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHM--DIHKGV--RYQCEEC------PKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLK   70 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~--~~h~~~--~~~C~~C------~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~   70 (263)
                      +++.|.+|+..|.+...+..|.  +.|...  .+.+...      ++.+....    +.........|-|.+|+++|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            3578999999999999999998  445332  2322110      11221111    11122344558899999999999


Q ss_pred             HHHHHHHH
Q psy11318         71 KDLLAHTM   78 (263)
Q Consensus        71 ~~l~~H~~   78 (263)
                      ..+..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.11  E-value=0.00096  Score=45.84  Aligned_cols=30  Identities=20%  Similarity=0.510  Sum_probs=21.2

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhc
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      .|+|+++|.|..|++.|.+.+.|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            356677777777777777777777776543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.96  E-value=0.0097  Score=41.40  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             cccccCCCccccCChhHHHHHHH--HhcCC-Cceecccc------cccccchHHHHHHHHHhcCCCcccCCcCCCcCCCH
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQN--AIHRG-IRFQCNKC------FRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASR   98 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~--~~~~~-~~~~C~~C------~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~   98 (263)
                      .++.|.+|+..|.+...+..|..  .|... +.+.+...      ++.+....    +.........|.|..|+..|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            37899999999999999999994  33222 11222100      11111110    11122344678999999999999


Q ss_pred             HHHHHHHHH
Q psy11318         99 HSLKNHILK  107 (263)
Q Consensus        99 ~~l~~H~~~  107 (263)
                      ..|..|+.+
T Consensus       107 ~~~~~H~~g  115 (127)
T 1zu1_A          107 VVAESHYIG  115 (127)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHCC
Confidence            999999865

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.62  E-value=0.0035  Score=43.05  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=12.7

Q ss_pred             ccccCCCccccCChhHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      +|.|..|++.|.+...|..|+++
T Consensus        50 pfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           50 LHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             ceEcccCcchhCCHHHHHHHHhh
Confidence            45555555555555555555543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.53  E-value=0.017  Score=31.85  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=16.5

Q ss_pred             cccccCCCccccCChhHHHHHHHH
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      .+|.|+-|+..|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            356777777777777777777764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.95  E-value=0.025  Score=41.42  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=73.4

Q ss_pred             ccccccccccCChH-----HHHHHHHhhCCccccc--CCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHH
Q psy11318          3 YYCNACSKNFSAKD-----TLNKHMDIHKGVRYQC--EECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA   75 (263)
Q Consensus         3 y~C~~C~~~f~~~~-----~L~~H~~~h~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~   75 (263)
                      ..|+.|...+....     .|..-+   ......|  ..|+..+. ...|..|+.. -.-.++.|+.|+..+ ....|..
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~~~~~i---~~l~v~C~n~GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~  127 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNFAKREI---LSLMVKCPNEGCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINI  127 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHH---HTSEEECCSTTCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHH
T ss_pred             CCCCCCccCcchhhhhhhHHHHHHH---hhcccCCCCCCCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHHHHHH
Confidence            37999998776532     122222   2345677  46776554 6678899744 666778999999988 5567999


Q ss_pred             HHHHhcCCCcccCCcCCCcCCCHHHHHHHHHHhcCCcc
Q psy11318         76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL  113 (263)
Q Consensus        76 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  113 (263)
                      |+......+...|+.|+..+.. ..|..|.....|..+
T Consensus       128 H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          128 HILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             HHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             HhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            9988888888999999998765 467889887776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.47  E-value=0.036  Score=28.51  Aligned_cols=26  Identities=27%  Similarity=0.622  Sum_probs=19.0

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      .|.|++|.+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            47777777777777777777766554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.90  E-value=0.054  Score=27.81  Aligned_cols=25  Identities=28%  Similarity=0.568  Sum_probs=16.5

Q ss_pred             ccCCcCCCcCCCHHHHHHHHHHhcC
Q psy11318         86 HPCSECPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        86 ~~C~~C~~~f~~~~~l~~H~~~~~~  110 (263)
                      |.|++|.+.|.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            6667776666666666666665553

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=93.85  E-value=0.026  Score=34.86  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=15.0

Q ss_pred             cccccccccCChHHHHHHHHhh
Q psy11318          4 YCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         4 ~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      +||+||..-. +..|...|.+-
T Consensus        10 ~~PlCG~~L~-W~eLIeQML~~   30 (95)
T 2k5c_A           10 KCPICGSPLK-WEELIEEMLII   30 (95)
T ss_dssp             ECSSSCCEEC-HHHHHHHSTTC
T ss_pred             cCCcCCCccC-HHHHHHHHHhh
Confidence            6899998655 56777776543

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=91.54  E-value=0.16  Score=25.25  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             cccCCCccccCChhHHHHHHHHhcC
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      -.|..|.+.|.+..+|..|++.-|+
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4588888888888888888887554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=90.54  E-value=0.11  Score=32.19  Aligned_cols=38  Identities=13%  Similarity=0.427  Sum_probs=18.0

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCceeccccccccc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYK   68 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~   68 (263)
                      |.|..||.++.- ..|..|...-.+...|.|=.|++.|.
T Consensus        11 F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeC
Confidence            555555544432 23555544433333455555555554

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.32  E-value=0.41  Score=24.65  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=10.9

Q ss_pred             eecccccccccchHHHHHHH
Q psy11318         58 FQCNKCFRAYKLKKDLLAHT   77 (263)
Q Consensus        58 ~~C~~C~~~f~~~~~l~~H~   77 (263)
                      +.|..|+..|.+...+..|.
T Consensus         9 ~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhh
Confidence            45555555555555555554

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=89.74  E-value=0.082  Score=29.29  Aligned_cols=13  Identities=31%  Similarity=1.027  Sum_probs=8.6

Q ss_pred             CCccccccccccC
Q psy11318          1 MRYYCNACSKNFS   13 (263)
Q Consensus         1 ~~y~C~~C~~~f~   13 (263)
                      +.|.|..||..|.
T Consensus         3 ~~y~C~vCGyvyd   15 (46)
T 6rxn_A            3 QKYVCNVCGYEYD   15 (46)
T ss_dssp             CCEEETTTCCEEC
T ss_pred             CEEECCCCCeEEe
Confidence            3567777777665

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.82  E-value=0.17  Score=33.28  Aligned_cols=28  Identities=29%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccccc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAY   67 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f   67 (263)
                      +|+|..||+.|.           ....++-.|+.|+...
T Consensus        67 p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           67 PAQCRKCGFVFK-----------AEINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCBBTTTCCBCC-----------CCSSCCSSCSSSCCCC
T ss_pred             CcChhhCcCeec-----------ccCCCCCCCcCCCCCc
Confidence            789999999881           1344567888887543

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.82  E-value=0.14  Score=32.56  Aligned_cols=27  Identities=19%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRK  171 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  171 (263)
                      ....|..||+.|.   .|.+|+..++|..+
T Consensus        20 d~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           20 DHIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             SCEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             CceEecccchhhH---HHHHHHHHccCCCH
Confidence            3468999999998   47799999888665

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=86.50  E-value=0.51  Score=22.95  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=13.9

Q ss_pred             cccCCCccccCChhHHHHHHH
Q psy11318         30 YQCEECPKDFSTRKYLTQHQN   50 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~   50 (263)
                      |.|++|.....+...|+.|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            566666666666666666654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.45  E-value=0.32  Score=30.82  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIR   57 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   57 (263)
                      -..|.+||+.|..   |++|+.++|+..+
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCH
Confidence            4679999999884   7799998777665

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=86.07  E-value=1.2  Score=25.15  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             cccccccccCChHHHHHHHHhhCCcccccCCC-ccccCChhHHHHHH
Q psy11318          4 YCNACSKNFSAKDTLNKHMDIHKGVRYQCEEC-PKDFSTRKYLTQHQ   49 (263)
Q Consensus         4 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C-~~~f~~~~~l~~H~   49 (263)
                      .|++|...-.+...|..|......  -+|++| .....+.+.|+.|.
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~--gqCPYC~~~~e~tesAlQaHf   49 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCIN--GQCPYCMTITEATESALQAHY   49 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTT--TBCTTTCCBCCSSHHHHHHHH
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCC--CCCCcccCcCCcCHHHHHHHH
Confidence            355555555555555555544433  244455 22334444455554

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.03  E-value=0.59  Score=23.19  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             ceecccccccccchHHHHHHHHHhcC
Q psy11318         57 RFQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus        57 ~~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      .--|..|.+.+....+|..|++..|.
T Consensus         9 kqhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35688999999999999999877663

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.49  E-value=0.56  Score=27.79  Aligned_cols=12  Identities=25%  Similarity=0.711  Sum_probs=6.1

Q ss_pred             ccccCCCccccC
Q psy11318         29 RYQCEECPKDFS   40 (263)
Q Consensus        29 ~~~C~~C~~~f~   40 (263)
                      .|.|-.|+..+.
T Consensus        21 ~Y~C~~Cg~~~~   32 (63)
T 3h0g_L           21 IYLCADCGARNT   32 (63)
T ss_dssp             CCBCSSSCCBCC
T ss_pred             EEECCCCCCeee
Confidence            355555555444

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=85.16  E-value=0.24  Score=35.75  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=15.8

Q ss_pred             ccccccccccCChHHHHHHHHhhCC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |+|..||| |....+|..||+.|..
T Consensus       155 YKCe~CgK-YvDId~~~~Hlk~Hg~  178 (226)
T 2czr_A          155 YKCEECGK-YVDIENLEAHLREHGI  178 (226)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             EehhhcCc-eecHHHHHHHHHHcCc
Confidence            66777776 5556677777766654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=84.86  E-value=0.79  Score=23.60  Aligned_cols=24  Identities=13%  Similarity=0.312  Sum_probs=14.6

Q ss_pred             CccCCcchhhhcChHHHHHHHhhc
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      .+.|..|+-.|.....+..|.+..
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCeeccccceehhhHHHhhhheec
Confidence            455666666666666666665543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.37  E-value=0.66  Score=28.74  Aligned_cols=37  Identities=32%  Similarity=0.690  Sum_probs=18.0

Q ss_pred             ccccccccccCChHHHHHHHHhhCC-cccccCCCccccC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFS   40 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~   40 (263)
                      |.|..||.+.. +..|..|...-.+ ..|.|-.|++.|.
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            34555554433 4455555444433 2455555555554

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.21  E-value=0.72  Score=30.34  Aligned_cols=33  Identities=15%  Similarity=0.082  Sum_probs=21.1

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccccccc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGV  185 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~~~~~  185 (263)
                      .+|+|..||+.|.           -...+|-+|+.|+.......
T Consensus        66 ~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~Ie~P   98 (105)
T 2gmg_A           66 KPAQCRKCGFVFK-----------AEINIPSRCPKCKSEWIEEP   98 (105)
T ss_dssp             CCCBBTTTCCBCC-----------CCSSCCSSCSSSCCCCBCCC
T ss_pred             ECcChhhCcCeec-----------ccCCCCCCCcCCCCCccCCc
Confidence            4678888888871           12346677888876554443

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.08  E-value=0.67  Score=28.68  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             ccccCCCccccC-------ChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFS-------TRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~-------~~~~l~~H~~~~~~   54 (263)
                      .-.|.+|++.+.       ....|++|++..|.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            468999999987       34679999988764

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=82.37  E-value=0.8  Score=25.07  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=15.5

Q ss_pred             CccccccccccCChHHHHHHHHhhCCcccccCCCccc
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKD   38 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~   38 (263)
                      -|.|.-||+.|+.. .|.+      -..-+|++||+.
T Consensus         3 iY~C~rCg~~fs~~-el~~------lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDE-QLKV------LPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCC-CSCC------CSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHH-HHhh------CCCcccCccCcE
Confidence            47777777777642 1110      024567777754

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=81.48  E-value=0.75  Score=27.97  Aligned_cols=27  Identities=30%  Similarity=0.755  Sum_probs=16.5

Q ss_pred             cccccCCCccccCChhHHHHHHHHhcCCCceecccccc
Q psy11318         28 VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFR   65 (263)
Q Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   65 (263)
                      ..|.|..||..|.-.           ......|+.||.
T Consensus        27 v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~   53 (70)
T 1twf_L           27 LKYICAECSSKLSLS-----------RTDAVRCKDCGH   53 (70)
T ss_dssp             CCEECSSSCCEECCC-----------TTSTTCCSSSCC
T ss_pred             EEEECCCCCCcceeC-----------CCCCccCCCCCc
Confidence            357777777776543           223356777775

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=80.88  E-value=0.36  Score=29.77  Aligned_cols=47  Identities=23%  Similarity=0.445  Sum_probs=28.0

Q ss_pred             cccc-CCCccccCChhHHHHHHHHhcCCCceecccccccccchHHHHHHH
Q psy11318         29 RYQC-EECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT   77 (263)
Q Consensus        29 ~~~C-~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   77 (263)
                      +-.| ..|+..+. +..|..|+...-......|..|+..|.. ..|..|.
T Consensus        16 ~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           16 VIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             ccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            5566 46766554 3556666654455566777777776654 3455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	9e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	8e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	8e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 9e-05
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 90  ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH 138
           +C K+F  +     H+        Y C  C   K +  K  L  HMK+H
Sbjct: 7   QCGKSFTHKSQRDRHMSMHLGLRPYGCGVC--GKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 118 ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
            C   K +  K    RHM +H   + Y C  C K +  +  L+ HM +H
Sbjct: 5   PCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 8e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 8  CSKNFSAKDTLNKHM-DIHKGVRYQCEECPKDFSTRKYLTQHQ 49
          C K+F+ K   ++HM        Y C  C K F  + +L  H 
Sbjct: 8  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH 76
          Y C+ C K F+ +    +H +       + C  C + +K+K  L+ H
Sbjct: 4  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 58  FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
           + C +C +++  K     H  +      + C  C K F  +H L  H +KIH
Sbjct: 4   YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
          Y C+ C K FS   +L  H   +H   R  +C 
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 8e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           R        +RY C +C K +   SDL +H   H+G
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
          IH G + Y C EC K FS    L QHQ  +H G
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
           H   K Y C +C K + + S L++H  VH+G
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (73), Expect = 0.004
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 3  YYCNACSKNFSAKDTLNKHMDIHKG 27
          Y C  C K FS    L +H  +H G
Sbjct: 8  YGCVECGKAFSRSSILVQHQRVHTG 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.003
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIH 53
           H G + Y+C  C   F+    +  H    H
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKH 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.62
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.6
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.21
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.14
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.1
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.06
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.05
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.04
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.03
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.99
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.92
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.91
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.86
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.86
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.85
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.8
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.8
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.8
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.75
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.74
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.73
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.71
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.64
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.64
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.6
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.58
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.57
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.54
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.51
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.49
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.13
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.05
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.95
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.87
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.84
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.79
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.77
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.72
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.64
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.61
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.61
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.54
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.5
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.48
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.47
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.43
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.38
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.35
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.24
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.18
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.13
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.02
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.97
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.95
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.86
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.82
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.82
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.81
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.77
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.74
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.71
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.65
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.6
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.55
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.48
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.41
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.03
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.97
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.94
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.92
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.84
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.76
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.72
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.63
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.58
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.48
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.94
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.91
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.85
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.81
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.07
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.69
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.67
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.5
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.88
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.48
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.16
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.58
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.28
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.79
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.44
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.1
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	89.09
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.43
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	88.41
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.27
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	87.99
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.93
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	87.38
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	86.79
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	86.33
d1fu9a_	36	U-shaped transcription factor, different fingers {	84.55
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	84.46
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.02
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	82.94
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.86

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-16  Score=93.13  Aligned_cols=51  Identities=33%  Similarity=0.718  Sum_probs=37.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc-ccccCCCccccCChhHHHHHHHHh
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAI   52 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~   52 (263)
                      |+|+| +||+.|..+..|..|+++|+++ ||.|.+||++|.....|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            57777 4777777777777777777774 777777777777777777777653

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-16  Score=91.88  Aligned_cols=53  Identities=34%  Similarity=0.756  Sum_probs=41.8

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHHHhCCCCCccCCcchhhhcChHHHHHHHhhc
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      +++|.|. ||  +.|.....|..|+++|+|++||.|..||+.|...+.|.+|+++|
T Consensus         1 EK~y~C~-Cg--k~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CG--KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TS--CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CC--CeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4677884 77  77888888888888888888888888888888888888887765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-12  Score=68.96  Aligned_cols=36  Identities=31%  Similarity=0.545  Sum_probs=27.0

Q ss_pred             CCCccCCcchhhhcChHHHHHHHh-hccCCCCCcCCC
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMA-VHSGVRKLTTGP  176 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~c~~  176 (263)
                      ++||+|..||+.|...++|.+|++ +|++++||.|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            577777777777777777777765 577777777753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.2e-13  Score=70.92  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=29.8

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |+++|++++||.|..||++|...++|.+|+++|+|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567788888888888888888888888888888874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.8e-12  Score=65.45  Aligned_cols=33  Identities=36%  Similarity=0.717  Sum_probs=28.1

Q ss_pred             HhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +|+|++||.|..||+.|...++|.+|+++|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888888888888888888888888888874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.3e-12  Score=66.24  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ++|+|++||+|..||+.|...+.|.+|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4688899999999999999999999999888765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=4.1e-12  Score=67.18  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             HHHHhCCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      |.++|+|++||.|..|++.|.+.++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45678888888888888888888888888888764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.3e-11  Score=60.33  Aligned_cols=27  Identities=37%  Similarity=0.823  Sum_probs=21.8

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |||+|.+|++.|.....|.+|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            678888888888888888888888865

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.6e-11  Score=63.43  Aligned_cols=32  Identities=16%  Similarity=0.463  Sum_probs=26.3

Q ss_pred             hCCCCCccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      |+|++||+|.+|++.|.+.++|.+|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57888888888888888888888888888754

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.8e-11  Score=58.23  Aligned_cols=26  Identities=38%  Similarity=0.676  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |||+|.+|||.|.....|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68888888888888888888888874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.06  E-value=4.2e-11  Score=59.23  Aligned_cols=28  Identities=21%  Similarity=0.681  Sum_probs=22.1

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||+|++||+.|.....|.+|+++|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5788888888888888888888888774

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.5e-11  Score=59.01  Aligned_cols=28  Identities=32%  Similarity=0.743  Sum_probs=22.9

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||.|++||+.|...+.|..|+++|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            6788888888888888888888888774

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.04  E-value=4e-11  Score=59.29  Aligned_cols=29  Identities=17%  Similarity=0.608  Sum_probs=21.2

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      +||.|.+|++.|++.+.|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46777777777777777777777777754

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.5e-11  Score=62.53  Aligned_cols=35  Identities=26%  Similarity=0.617  Sum_probs=24.8

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHH-HhCCCCCccCC
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCT  147 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~-~h~~~~~~~C~  147 (263)
                      ++||+|..|+  ++|...+.|..|++ +|+|++||+|.
T Consensus         3 ~Kpy~C~~Cg--k~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCG--KGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSC--CEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCC--CCcCChHHhhccCcCccCCCcCcCCc
Confidence            5677777777  77777777777764 57777777775

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.6e-11  Score=63.43  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=26.7

Q ss_pred             HHhCCCCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      ++|+|++||+|..|++.|++.++|.+|++.+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            368888888888888888888888888766554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.7e-11  Score=59.19  Aligned_cols=28  Identities=25%  Similarity=0.689  Sum_probs=21.8

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      |+||+|..|++.|.+.+.|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5778888888888888888888887765

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.3e-11  Score=57.83  Aligned_cols=29  Identities=24%  Similarity=0.748  Sum_probs=23.1

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCC
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      +||.|..||+.|++.+.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            47888888888888888888888888764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.3e-10  Score=61.76  Aligned_cols=36  Identities=25%  Similarity=0.539  Sum_probs=26.0

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |++.|.+++||.|..|+  ++|...+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~Cg--K~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECG--KSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSC--CBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCC--ceeeCHHHHHHhCccCCCC
Confidence            55666777777777777  7777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.8e-10  Score=59.99  Aligned_cols=32  Identities=31%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             ccCCc--chhhhcChHHHHHHHhhccCCCCCcCC
Q psy11318        144 YHCTQ--CSKFYIQESDLMEHMAVHSGVRKLTTG  175 (263)
Q Consensus       144 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~c~  175 (263)
                      |.|++  |++.|.+.+.|++|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45554  666666666666666666666666664

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.1e-10  Score=56.33  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=21.5

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |.+++||.|..|+  ++|...+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cg--k~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECG--KAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSC--CEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCC--CEeCchHHhHhhccccCCC
Confidence            5566666776666  6677777777776666654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=4.4e-11  Score=66.53  Aligned_cols=39  Identities=21%  Similarity=0.503  Sum_probs=29.8

Q ss_pred             HHHHHHHhCCCCCccCCc--chhhhcChHHHHHHHhhccCCC
Q psy11318        131 LRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       131 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      |..|+. |.|++||.|.+  |++.|.+.++|.+|+++|+|++
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            344553 77888888876  8888888888888888888764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.2e-10  Score=54.70  Aligned_cols=28  Identities=29%  Similarity=0.580  Sum_probs=22.3

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||.|++  |++.|.....|+.|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6788877  888888888888888888763

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.5e-10  Score=54.95  Aligned_cols=28  Identities=36%  Similarity=0.669  Sum_probs=21.4

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||.|++  ||+.|.....|+.|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6778866  888888888888888877763

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=9e-10  Score=57.94  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=25.4

Q ss_pred             HHHHhcCCccccCCCCCCCcccCCHHHHHHHHHHhCC
Q psy11318        104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN  140 (263)
Q Consensus       104 H~~~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~  140 (263)
                      |.+.|.|++||.|..|+  ++|...+.|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~--k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCD--RSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTC--CCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCC--CEecCHHHHHHHHhcCcC
Confidence            55667777777777777  777777777777777653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1e-09  Score=54.36  Aligned_cols=28  Identities=36%  Similarity=0.629  Sum_probs=20.3

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +||+|.+  |++.|.+.+.|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677766  777777777777777777764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.5e-09  Score=56.68  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             HhcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       107 ~~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      .|.|++||.|.+|+  ++|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~--k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCD--KTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSS--CEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCC--CCcCCHhHHHHhCcccCCC
Confidence            45566666666666  6666666666666666554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.8e-10  Score=52.45  Aligned_cols=26  Identities=38%  Similarity=0.859  Sum_probs=18.5

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +||+|..||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            46777777777777777777777663

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-09  Score=54.40  Aligned_cols=28  Identities=32%  Similarity=0.705  Sum_probs=20.1

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +||.|.+  |++.|++.+.|++|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4677766  777777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.9e-09  Score=53.93  Aligned_cols=29  Identities=28%  Similarity=0.695  Sum_probs=21.7

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhccCCC
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHSGVR  170 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  170 (263)
                      +||.|++  |++.|++.++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            4677754  8888888888888888887764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.3e-09  Score=55.03  Aligned_cols=32  Identities=41%  Similarity=0.933  Sum_probs=22.3

Q ss_pred             ccCCC--CCCCcccCCHHHHHHHHHHhCCCCCccCC
Q psy11318        114 YQCNE--CSTSKDYLTKRDLRRHMKLHFNGKRYHCT  147 (263)
Q Consensus       114 ~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~~~~C~  147 (263)
                      |.|+.  |+  ++|.+.+.|++|+++|+|++||.|.
T Consensus         2 f~C~~~~C~--k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACG--KSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTC--CEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCC--CeeCChhHhccccCeeCCCCCEeCC
Confidence            45655  44  7777777777777777777777775

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3.4e-09  Score=54.50  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |.|++||+|.+|+  +.|.+.++|..|+++|+++
T Consensus         2 ~TGekPy~C~~C~--k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICL--SAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSC--CEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCC--CcccChHHHHHHccccCCc
Confidence            4577777777777  7777777777777777654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.2e-09  Score=52.65  Aligned_cols=28  Identities=32%  Similarity=0.738  Sum_probs=21.6

Q ss_pred             CCcccc--ccccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCN--ACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~--~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||.|+  .|++.|.....|..|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            578884  5888888888888888888774

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.4e-09  Score=52.50  Aligned_cols=27  Identities=37%  Similarity=0.854  Sum_probs=22.0

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |||+|++  |++.|.+.+.|+.|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6788877  88888888888888888865

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.6e-09  Score=53.79  Aligned_cols=28  Identities=14%  Similarity=0.376  Sum_probs=15.1

Q ss_pred             hcCCccccCCCCCCCcccCCHHHHHHHHHH
Q psy11318        108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKL  137 (263)
Q Consensus       108 ~~~~~~~~C~~C~~~~~f~~~~~l~~H~~~  137 (263)
                      |.|++||+|++|+  ++|...++|..|++.
T Consensus         3 HTgekP~~C~~C~--k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           3 HSGEKPYECYICH--ARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CSCCCSEECTTTC--CEESCHHHHHHHHHH
T ss_pred             cCCCCCEeCCCCc--ccccchHHHHHHccc
Confidence            4455555555555  555555555555443

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=9.4e-09  Score=46.11  Aligned_cols=26  Identities=46%  Similarity=0.816  Sum_probs=20.8

Q ss_pred             CccccccccccCChHHHHHHHHhhCC
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |.+|+.|++.|..+..|+.||+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45788888888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.1e-08  Score=51.36  Aligned_cols=28  Identities=29%  Similarity=0.782  Sum_probs=23.6

Q ss_pred             CCCccCCc--chhhhcChHHHHHHHhhccC
Q psy11318        141 GKRYHCTQ--CSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       141 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  168 (263)
                      |+||.|.+  |++.|++.++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            57888877  88888888888888888875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.3e-08  Score=45.68  Aligned_cols=26  Identities=31%  Similarity=0.705  Sum_probs=22.9

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      |.+|++|++.|+++..|+.||+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999998875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.5e-09  Score=49.87  Aligned_cols=26  Identities=31%  Similarity=0.663  Sum_probs=18.6

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~   26 (263)
                      |||.|++  |||.|...+.|+.|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5677766  7777777777777777764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=6.7e-09  Score=50.85  Aligned_cols=27  Identities=30%  Similarity=0.865  Sum_probs=19.8

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhccC
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  168 (263)
                      +||+|.+  |++.|++.+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4677766  77777777777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=2.6e-08  Score=49.95  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=19.7

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |||.|++  |++.|...+.|..|+++|+.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            5777766  77777777777777777765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3.5e-09  Score=58.63  Aligned_cols=39  Identities=15%  Similarity=0.481  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCccccCCC--CCCCcccCCHHHHHHHHHHhCCCC
Q psy11318        101 LKNHILKIHKAVLYQCNE--CSTSKDYLTKRDLRRHMKLHFNGK  142 (263)
Q Consensus       101 l~~H~~~~~~~~~~~C~~--C~~~~~f~~~~~l~~H~~~h~~~~  142 (263)
                      |..|+. |.+++||.|.+  |+  ++|...+.|..|+++|+|++
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~--k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCT--KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCC--CEECSSSSHHHHHHHHTTTC
T ss_pred             hcchhh-ccCCCCeECCcCCCC--ccccCchHHHhhcccccCCC
Confidence            344553 66777777766  66  77777777777777777764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-08  Score=49.37  Aligned_cols=26  Identities=31%  Similarity=0.731  Sum_probs=21.5

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhcc
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  167 (263)
                      +||+|.+  |++.|++.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788877  8888888888888888874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.1e-08  Score=45.37  Aligned_cols=28  Identities=32%  Similarity=0.688  Sum_probs=24.6

Q ss_pred             CCccccccccccCChHHHHHHHHhhCCc
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |||.|++|++.|..++.+..|+++|.|.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCcccchHHHHhhccccceEeeecccCc
Confidence            7899999999999999999999998773

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=2.4e-07  Score=42.94  Aligned_cols=27  Identities=19%  Similarity=0.552  Sum_probs=22.5

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      ++||.|..||+.|++....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            578888888888888888888888774

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=5.4e-07  Score=41.73  Aligned_cols=26  Identities=27%  Similarity=0.721  Sum_probs=21.5

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |||.|++||..|......++|.++|-
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            68888888888888888888888774

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.8e-07  Score=41.83  Aligned_cols=27  Identities=30%  Similarity=0.739  Sum_probs=20.4

Q ss_pred             CCccccc--cccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNA--CSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~--C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |||.|..  |+|.|...++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6788866  77888888888888877654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.8e-07  Score=42.99  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=16.1

Q ss_pred             cccCCCccccCChhHHHHHHHHhcCCCce
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHRGIRF   58 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~   58 (263)
                      ..|++||+.|.+...|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=9.2e-07  Score=40.56  Aligned_cols=28  Identities=25%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             CCCccCCcchhhhcChHHHHHHHhhccC
Q psy11318        141 GKRYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      ++||+|..|.+.-...+.|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4678888888887888888888888776

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.9e-06  Score=39.32  Aligned_cols=26  Identities=35%  Similarity=0.738  Sum_probs=19.5

Q ss_pred             ccCCcchhhhcChHHHHHHHhhccCC
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      ..|..||+.|...+.|++|..+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46777888888777888887777763

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.5e-06  Score=41.02  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             ccCCcchhhhcChHHHHHHHhhccCCCCC
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVHSGVRKL  172 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  172 (263)
                      ..|..||+.|...-.|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            45666777776666667776666666665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.9e-06  Score=37.78  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=15.6

Q ss_pred             CCccccccccccCChHHHHHHHHhhC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |||+|..|+..-...++|+.|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45666666666555666666666553

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=5.6e-06  Score=37.14  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=19.1

Q ss_pred             cccccccccCChHHHHHHHHhhCCc
Q psy11318          4 YCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         4 ~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      +|+.|.+.|.++.-|+.|.+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777788887777788877777763

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-05  Score=37.07  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=13.4

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCC
Q psy11318        114 YQCNECSTSKDYLTKRDLRRHMKLHFNG  141 (263)
Q Consensus       114 ~~C~~C~~~~~f~~~~~l~~H~~~h~~~  141 (263)
                      |.|+.|+  .....++.|+.|++.|+++
T Consensus         2 YvC~~Cg--~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECG--IRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTC--CBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccC--cccCCHHHHHHHHHHhcCC
Confidence            4455555  5555555555555555544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.1e-05  Score=37.78  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=11.9

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      ||.|.+.||.+++..++.|+.|++.+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhh
Confidence            44444444444444444444444443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.1e-05  Score=37.77  Aligned_cols=24  Identities=25%  Similarity=0.616  Sum_probs=9.8

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      ||.|++|+  .+|..+..+..|.+.|
T Consensus         3 p~~cpic~--qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           3 PYSCPVCG--LRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             SSEETTTT--EECSCHHHHHHHHHHH
T ss_pred             CcccchHH--HHhhccccceEeeecc
Confidence            34444444  3444444444444443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=8.5e-06  Score=37.46  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=22.5

Q ss_pred             ccccccccccCChHHHHHHHHhhCCc
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKGV   28 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~~   28 (263)
                      |.|..|..+|..+..|+.||.+|+|.
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccCC
Confidence            67899999999999999999988873

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.9e-06  Score=37.50  Aligned_cols=26  Identities=35%  Similarity=0.682  Sum_probs=20.7

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +||+|..|++.-...++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57888888888888888888888774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.9e-05  Score=36.32  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             ccCCcCCCcCCCHHHHHHHHHHhcCCc
Q psy11318         86 HPCSECPKTFASRHSLKNHILKIHKAV  112 (263)
Q Consensus        86 ~~C~~C~~~f~~~~~l~~H~~~~~~~~  112 (263)
                      |.|++|+......+.|+.|++.|.+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999998764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.5e-05  Score=36.42  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=13.3

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ||+|..|.+.-.+.+.|..|++.|.+
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             cceeeecccccCCchheEEeeecccC
Confidence            45555555555555555555555443

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=36.00  Aligned_cols=25  Identities=32%  Similarity=0.716  Sum_probs=20.2

Q ss_pred             ccccccccccCChHHHHHHHHhhCC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      ..|.+|||.|.....|++|+..|++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3588888888888888888888876

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2e-05  Score=36.26  Aligned_cols=23  Identities=35%  Similarity=0.715  Sum_probs=13.9

Q ss_pred             ccccCCCccccCChhHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      ||.|..|+..|.++++|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45566666666666666666654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2e-05  Score=36.23  Aligned_cols=24  Identities=38%  Similarity=0.740  Sum_probs=22.3

Q ss_pred             CccccccccccCChHHHHHHHHhh
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      ||.|.+|++.|.++.+|..||.+-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.50  E-value=2.7e-05  Score=34.25  Aligned_cols=24  Identities=33%  Similarity=0.815  Sum_probs=18.2

Q ss_pred             ccCCcchhhhcChHHHHHHHhhcc
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      |+|..|.+.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            567777778888888888777763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.3e-05  Score=34.74  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=15.1

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ||.|.+|.+...+.++|+.|+++.|.
T Consensus         2 py~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             Cccccccccccccchhhhhhhhcccc
Confidence            45566666666666666666655443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.2e-05  Score=39.30  Aligned_cols=24  Identities=33%  Similarity=0.778  Sum_probs=20.7

Q ss_pred             CCccccccccccCChHHHHHHHHh
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDI   24 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~   24 (263)
                      |||.|..|+|.|-.++++.+|...
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhhh
Confidence            789999999999999999998754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=6.1e-05  Score=33.67  Aligned_cols=25  Identities=28%  Similarity=0.619  Sum_probs=18.5

Q ss_pred             ccCCCccccCChhHHHHHHHHhcCC
Q psy11318         31 QCEECPKDFSTRKYLTQHQNAIHRG   55 (263)
Q Consensus        31 ~C~~C~~~f~~~~~l~~H~~~~~~~   55 (263)
                      +|+.|.+.|.++..|+.|-+.|.++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777777777777777777776665

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=5.3e-05  Score=34.99  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=24.6

Q ss_pred             CCccccccccccCChHHHHHHHHhhCC
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |||+|.+|.......++|+.|+.+-++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            799999999999999999999987654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=4.1e-05  Score=33.67  Aligned_cols=22  Identities=45%  Similarity=0.949  Sum_probs=14.7

Q ss_pred             CCccccccccccCChHHHHHHH
Q psy11318          1 MRYYCNACSKNFSAKDTLNKHM   22 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~~L~~H~   22 (263)
                      |||+|.-|.+.|-.+..|..||
T Consensus         1 mpykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHH
Confidence            5666666666666666666665

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.38  E-value=5.7e-05  Score=38.20  Aligned_cols=24  Identities=29%  Similarity=0.668  Sum_probs=12.4

Q ss_pred             cccCCCccccCChhHHHHHHHHhc
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      |.|.+|++.|.+-..|--||+.|.
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTC
T ss_pred             cCCCCCCCccCCcccccchHhhhc
Confidence            455555555555555555555443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=3.8e-05  Score=35.21  Aligned_cols=24  Identities=38%  Similarity=0.711  Sum_probs=13.3

Q ss_pred             CccCCc--chhhhcChHHHHHHHhhc
Q psy11318        143 RYHCTQ--CSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       143 ~~~C~~--C~~~f~~~~~l~~H~~~h  166 (263)
                      ||+|+.  |++.|+..+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  555555555555555544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=7.3e-05  Score=34.27  Aligned_cols=26  Identities=27%  Similarity=0.691  Sum_probs=15.5

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      -|.|..|...|.++-.|..||-.|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            45566666666666666666666554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.18  E-value=0.00016  Score=31.70  Aligned_cols=24  Identities=38%  Similarity=0.924  Sum_probs=16.4

Q ss_pred             ccccccccccCChHHHHHHHHhhC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |+|..|...|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            567777777777777777766654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.13  E-value=0.00019  Score=36.22  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=13.9

Q ss_pred             cccCCcCCCcCCCHHHHHHHHHHhc
Q psy11318         85 RHPCSECPKTFASRHSLKNHILKIH  109 (263)
Q Consensus        85 ~~~C~~C~~~f~~~~~l~~H~~~~~  109 (263)
                      .|.|.+|++.|.+...|-.|++.|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            4555555555555555555555554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.02  E-value=0.00038  Score=31.81  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             ccccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        112 VLYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       112 ~~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      .||+|+.-||.+.|..++.|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            467787666668888888888887765

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00014  Score=33.48  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=16.3

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhcc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~  167 (263)
                      +||+|..|.....+.++|..|++.-+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            35666666666666666666665443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00028  Score=31.84  Aligned_cols=24  Identities=21%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             CccccccccccCChHHHHHHHHhh
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      +|+|++|+-.-..++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            578888888888888888887654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00029  Score=31.68  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=13.9

Q ss_pred             CccccccccccCChHHHHHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHM   22 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~   22 (263)
                      ||+|..|||.|..+..|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            466666777666666666664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00023  Score=36.09  Aligned_cols=26  Identities=23%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             CCCCCccCCcchhhhcChHHHHHHHh
Q psy11318        139 FNGKRYHCTQCSKFYIQESDLMEHMA  164 (263)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (263)
                      +|.+||.|..|++.|--++++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            36678888888888888888888764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.0005  Score=30.12  Aligned_cols=23  Identities=30%  Similarity=0.715  Sum_probs=17.4

Q ss_pred             ccccCCCccccCChhHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      ||+|..|...|..+..|+.||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            67777888778877777777754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.82  E-value=0.00036  Score=32.85  Aligned_cols=22  Identities=32%  Similarity=0.809  Sum_probs=13.5

Q ss_pred             CccccccccccCChHHHHHHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~   23 (263)
                      ||.|.+|+..|..++.|-+|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4566666666666666666644

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00012  Score=34.51  Aligned_cols=25  Identities=40%  Similarity=0.728  Sum_probs=13.9

Q ss_pred             CccCCc--chhhhcChHHHHHHH-hhcc
Q psy11318        143 RYHCTQ--CSKFYIQESDLMEHM-AVHS  167 (263)
Q Consensus       143 ~~~C~~--C~~~f~~~~~l~~H~-~~h~  167 (263)
                      ||.|.+  |.+.|+..++-.+|+ ++|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            555554  566666555555554 4443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.77  E-value=0.00037  Score=32.82  Aligned_cols=26  Identities=35%  Similarity=0.793  Sum_probs=15.6

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ||.|.+|++.|..+.-|.+|+...|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            45666666666666666666655443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00055  Score=31.45  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=13.1

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ||+|..|..-....++|..|++..|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            45555555555555555555544443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.71  E-value=0.0004  Score=31.85  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=12.5

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHhCC
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMKLHFN  140 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~~h~~  140 (263)
                      ||.|..-||.+.|.+...|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            3444433333444444444444444443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.65  E-value=0.00029  Score=32.35  Aligned_cols=28  Identities=29%  Similarity=0.605  Sum_probs=24.4

Q ss_pred             CCccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        142 KRYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      +||.|..  |.+.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4788866  999999999999999999874

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0014  Score=30.06  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=15.2

Q ss_pred             cccCCCccccCChhHHHHHHHHhcC
Q psy11318         30 YQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      |.|.+||+..++...++-|++..|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            5566666666666666666665443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00025  Score=33.40  Aligned_cols=29  Identities=28%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             ccccCCCCCCCcccCCHHHHHHHH-HHhCC
Q psy11318        112 VLYQCNECSTSKDYLTKRDLRRHM-KLHFN  140 (263)
Q Consensus       112 ~~~~C~~C~~~~~f~~~~~l~~H~-~~h~~  140 (263)
                      +||.|..-||.+.|.+.++-..|+ ++|.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            477887755558888888888886 66654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00098  Score=30.15  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=14.9

Q ss_pred             CccccccccccCChHHHHHHHHhh
Q psy11318          2 RYYCNACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~~~h   25 (263)
                      |-+|++|.....++..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            345666666666666666666655

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0011  Score=29.78  Aligned_cols=22  Identities=23%  Similarity=0.673  Sum_probs=15.9

Q ss_pred             ccccCCCccccCChhHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQN   50 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~   50 (263)
                      ||+|..||+.|..+.+|..|.-
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5777777777777777777753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0034  Score=31.25  Aligned_cols=28  Identities=14%  Similarity=0.307  Sum_probs=16.9

Q ss_pred             CccccCCCCCCCcccCCHHHHHHHHHHh
Q psy11318        111 AVLYQCNECSTSKDYLTKRDLRRHMKLH  138 (263)
Q Consensus       111 ~~~~~C~~C~~~~~f~~~~~l~~H~~~h  138 (263)
                      ++||.|..-||..+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            5666665444446666666666666555

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0021  Score=33.67  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=18.2

Q ss_pred             ccccccccccCChHHHHHHHHhhC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |.|-.|||.|.....|+.|...|.
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            567788888888888888877664

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0025  Score=30.63  Aligned_cols=25  Identities=32%  Similarity=0.856  Sum_probs=21.8

Q ss_pred             ccccccccccCChHHHHHHHHhhCC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |.|..|||+|..+..+.+|.....|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            7899999999999999999877666

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0016  Score=31.36  Aligned_cols=26  Identities=19%  Similarity=0.627  Sum_probs=21.7

Q ss_pred             CccCCcchhhhcChHHHHHHHhhccC
Q psy11318        143 RYHCTQCSKFYIQESDLMEHMAVHSG  168 (263)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h~~  168 (263)
                      .|+|..|++.|.++..+.+|-....|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47899999999999999998776655

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0022  Score=28.93  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=12.6

Q ss_pred             ccCCcchhhhcChHHHHHHHhhc
Q psy11318        144 YHCTQCSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h  166 (263)
                      .+|+.|.+....+..|+.|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            34555555555555555555555

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0049  Score=28.16  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=15.5

Q ss_pred             eecccccccccchHHHHHHHHHhcC
Q psy11318         58 FQCNKCFRAYKLKKDLLAHTMLEHF   82 (263)
Q Consensus        58 ~~C~~C~~~f~~~~~l~~H~~~~~~   82 (263)
                      |.|..|++...+...++.|++..|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            5566666666666666666655554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0033  Score=31.33  Aligned_cols=25  Identities=28%  Similarity=0.697  Sum_probs=16.0

Q ss_pred             CCccc--cccccccCChHHHHHHHHhh
Q psy11318          1 MRYYC--NACSKNFSAKDTLNKHMDIH   25 (263)
Q Consensus         1 ~~y~C--~~C~~~f~~~~~L~~H~~~h   25 (263)
                      |||.|  +=|++.|.+...|..|...|
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhhh
Confidence            46666  55666666666666666554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.72  E-value=0.0047  Score=27.05  Aligned_cols=22  Identities=27%  Similarity=0.812  Sum_probs=11.0

Q ss_pred             eecccccccccchHHHHHHHHH
Q psy11318         58 FQCNKCFRAYKLKKDLLAHTML   79 (263)
Q Consensus        58 ~~C~~C~~~f~~~~~l~~H~~~   79 (263)
                      |.|+.|-+.|.++.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4455555555555555555443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0033  Score=30.60  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=11.6

Q ss_pred             hhhcChHHHHHHHhhccCC
Q psy11318        151 KFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       151 ~~f~~~~~l~~H~~~h~~~  169 (263)
                      +.|.....|..|+++|+|+
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            3466666666666666653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.58  E-value=0.0052  Score=26.88  Aligned_cols=22  Identities=41%  Similarity=0.865  Sum_probs=15.7

Q ss_pred             ccccccccccCChHHHHHHHHh
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDI   24 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~   24 (263)
                      |-|+.|-+.|+.+.++..|+.+
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5677777777777777777654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0065  Score=27.27  Aligned_cols=25  Identities=20%  Similarity=0.535  Sum_probs=19.8

Q ss_pred             ccccCCCccccCChhHHHHHHHHhc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      .|.|++|+-....++.|..|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3778888888888888888887654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.94  E-value=0.014  Score=30.42  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=17.2

Q ss_pred             CcccccCCCccccCChhHHHHHHHHhcC
Q psy11318         27 GVRYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      ..|-.|++|+.......+|++|+...|-
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            3456666666666666666666665443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.91  E-value=0.0055  Score=28.48  Aligned_cols=27  Identities=33%  Similarity=0.715  Sum_probs=16.8

Q ss_pred             CccCCc--chhhhcChHHHHHHHhhccCC
Q psy11318        143 RYHCTQ--CSKFYIQESDLMEHMAVHSGV  169 (263)
Q Consensus       143 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~  169 (263)
                      .|.|..  |+..|.....|..|+..|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            355544  666666666666666666653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.85  E-value=0.011  Score=27.41  Aligned_cols=20  Identities=20%  Similarity=0.436  Sum_probs=9.4

Q ss_pred             CCCcCCCHHHHHHHHHHhcC
Q psy11318         91 CPKTFASRHSLKNHILKIHK  110 (263)
Q Consensus        91 C~~~f~~~~~l~~H~~~~~~  110 (263)
                      |+..|...+.|..|+..|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            44444444444444444443

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.81  E-value=0.0045  Score=27.58  Aligned_cols=24  Identities=29%  Similarity=0.609  Sum_probs=16.1

Q ss_pred             ccCCc--chhhhcChHHHHHHHhhcc
Q psy11318        144 YHCTQ--CSKFYIQESDLMEHMAVHS  167 (263)
Q Consensus       144 ~~C~~--C~~~f~~~~~l~~H~~~h~  167 (263)
                      |.|..  |++.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45543  7777777777777776664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.02  Score=29.88  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             ccccCCCccccCChhHHHHHHHHh
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAI   52 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~   52 (263)
                      -|.|-.|+|.|.+...|++|.-.|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            578889999999999999987664

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.025  Score=27.41  Aligned_cols=20  Identities=15%  Similarity=0.195  Sum_probs=13.3

Q ss_pred             CCcCCCHHHHHHHHHHhcCC
Q psy11318         92 PKTFASRHSLKNHILKIHKA  111 (263)
Q Consensus        92 ~~~f~~~~~l~~H~~~~~~~  111 (263)
                      ++.|...+.|..|+|.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34577777777777777654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.0094  Score=33.92  Aligned_cols=34  Identities=18%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcCCCceecccccc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFR   65 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   65 (263)
                      .|.|+.|++.|.....++.   .-.....|.|..|+.
T Consensus        14 ~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             EEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCC
T ss_pred             ceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCC
Confidence            4666666666665554433   112223466666654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.50  E-value=0.022  Score=26.91  Aligned_cols=21  Identities=38%  Similarity=0.795  Sum_probs=15.0

Q ss_pred             CccccccccccCChHHHHHHH
Q psy11318          2 RYYCNACSKNFSAKDTLNKHM   22 (263)
Q Consensus         2 ~y~C~~C~~~f~~~~~L~~H~   22 (263)
                      +|.|+-||-.|.+.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            466777777777777777776

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.88  E-value=0.067  Score=27.73  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=18.0

Q ss_pred             CceecccccccccchHHHHHHHHHhcCCC
Q psy11318         56 IRFQCNKCFRAYKLKKDLLAHTMLEHFGI   84 (263)
Q Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   84 (263)
                      .+-.|++|+.....+.+|.+|+..-|..+
T Consensus        23 qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            34566666666666666666666555444

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.021  Score=32.98  Aligned_cols=21  Identities=29%  Similarity=0.611  Sum_probs=12.6

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy11318          3 YYCNACSKNFSAKDTLNKHMD   23 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~   23 (263)
                      |-|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            456666666666666666653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.04  Score=30.89  Aligned_cols=24  Identities=29%  Similarity=0.832  Sum_probs=15.7

Q ss_pred             ccccccccccCChHHHHHHHHhhC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHK   26 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~   26 (263)
                      |+|.+|.-.|.+...|..|+..|.
T Consensus        19 yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          19 YQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeechhHHHHhhHHHHHHHHHhcc
Confidence            666666666666666666666653

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.044  Score=24.64  Aligned_cols=18  Identities=28%  Similarity=0.750  Sum_probs=12.7

Q ss_pred             chhhhcChHHHHHHHhhc
Q psy11318        149 CSKFYIQESDLMEHMAVH  166 (263)
Q Consensus       149 C~~~f~~~~~l~~H~~~h  166 (263)
                      |++.|...+.+++|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            677777777777776665

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.28  E-value=0.14  Score=24.39  Aligned_cols=26  Identities=19%  Similarity=0.600  Sum_probs=18.7

Q ss_pred             ccccCCCccccCChhHHHHHHHHhcC
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIHR   54 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~~   54 (263)
                      .|.|.+|.+.+...+++-+|..+.|.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            47777777777777777777766543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.79  E-value=0.12  Score=24.30  Aligned_cols=22  Identities=18%  Similarity=0.478  Sum_probs=15.6

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHH
Q psy11318        113 LYQCNECSTSKDYLTKRDLRRHMK  136 (263)
Q Consensus       113 ~~~C~~C~~~~~f~~~~~l~~H~~  136 (263)
                      .|.|.-||  .+|.+.+.|..|+.
T Consensus         8 rf~c~pcg--irfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCG--IAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTC--CBCSCHHHHHHHTT
T ss_pred             ceeccccc--eeecChhHHHhhhh
Confidence            46677777  77777777777654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.046  Score=31.52  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             ccccCCCccccCChhHHHHHHHH
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNA   51 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (263)
                      .|-|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            58899999999999999999875

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.061  Score=30.43  Aligned_cols=34  Identities=15%  Similarity=0.380  Sum_probs=18.0

Q ss_pred             eecccccccccchHHHHHHHHHhcCCCcccCCcCCCc
Q psy11318         58 FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKT   94 (263)
Q Consensus        58 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~   94 (263)
                      |.|+.|++.|.....+..   .......|.|..|+-.
T Consensus        15 y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          15 FKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             EECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             eECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            666666666665443322   2233344666666543

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=89.09  E-value=0.078  Score=26.34  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=15.1

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCccc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTE  180 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~  180 (263)
                      +.|+|.+||+.             +.++-|-+|++|+..
T Consensus         4 ~~~vC~vCGyi-------------~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           4 KFHLCPICGYI-------------HKGEDFEKCPICFRP   29 (36)
T ss_dssp             CEEECSSSCCE-------------EESSCCSBCTTTCCB
T ss_pred             CEEECCCCCCE-------------eeCCCCCcCCCCCCc
Confidence            45667777644             234455667766654

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=88.41  E-value=0.06  Score=36.72  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=16.1

Q ss_pred             ccccccccccCChHHHHHHHHhhCC
Q psy11318          3 YYCNACSKNFSAKDTLNKHMDIHKG   27 (263)
Q Consensus         3 y~C~~C~~~f~~~~~L~~H~~~h~~   27 (263)
                      |+|.+||| |....+|..||+.|..
T Consensus       147 YKCe~CgK-YvDie~~~~H~k~HG~  170 (218)
T d2czra1         147 YKCEECGK-YVDIENLEAHLREHGI  170 (218)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             eehhhcCc-eecHHHHHHHHHHcCc
Confidence            66777776 5556777777776654

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.15  Score=28.48  Aligned_cols=25  Identities=32%  Similarity=0.644  Sum_probs=22.6

Q ss_pred             ccccCCCccccCChhHHHHHHHHhc
Q psy11318         29 RYQCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      -|+|.+|.-.|.+...|..|+..|.
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhcc
Confidence            5999999999999999999998865

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.93  E-value=0.22  Score=23.76  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=12.1

Q ss_pred             cccCCcCCCcCCCHHHHHHHHHHh
Q psy11318         85 RHPCSECPKTFASRHSLKNHILKI  108 (263)
Q Consensus        85 ~~~C~~C~~~f~~~~~l~~H~~~~  108 (263)
                      .|+|..|.+.+...+++-+|....
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhh
Confidence            345555555555555555554443

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.38  E-value=0.15  Score=25.46  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=14.9

Q ss_pred             CCccCCcchhhhcChHHHHHHHhhccCCCCCcCCCCcccc
Q psy11318        142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQ  181 (263)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~c~~c~~~~  181 (263)
                      +.|+|.+||+.+             .++-|-+|++|+..-
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~~~   30 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGAPK   30 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCCBG
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCCcH
Confidence            346666666442             244556666666543

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=86.79  E-value=0.14  Score=26.76  Aligned_cols=14  Identities=29%  Similarity=0.961  Sum_probs=9.1

Q ss_pred             CCccccccccccCC
Q psy11318          1 MRYYCNACSKNFSA   14 (263)
Q Consensus         1 ~~y~C~~C~~~f~~   14 (263)
                      ++|.|..||..|.-
T Consensus         2 ~~y~C~~CgyiYd~   15 (45)
T d6rxna_           2 QKYVCNVCGYEYDP   15 (45)
T ss_dssp             CCEEETTTCCEECG
T ss_pred             CCeEeCCCCeEECc
Confidence            35677777776654

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.33  E-value=0.05  Score=29.74  Aligned_cols=16  Identities=25%  Similarity=0.802  Sum_probs=11.2

Q ss_pred             CCccccccccccCChH
Q psy11318          1 MRYYCNACSKNFSAKD   16 (263)
Q Consensus         1 ~~y~C~~C~~~f~~~~   16 (263)
                      ++|.|..||..|.-..
T Consensus         2 ~ky~C~~CgyiYd~~~   17 (53)
T d1iroa_           2 KKYTCTVCGYIYNPED   17 (53)
T ss_dssp             CCEEETTTCCEECTTT
T ss_pred             CCeEcCCCCcEECccc
Confidence            4678888888776543

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.55  E-value=0.48  Score=22.83  Aligned_cols=19  Identities=32%  Similarity=0.651  Sum_probs=10.8

Q ss_pred             cccccccccchHHHHHHHH
Q psy11318         60 CNKCFRAYKLKKDLLAHTM   78 (263)
Q Consensus        60 C~~C~~~f~~~~~l~~H~~   78 (263)
                      |..|+..|.....+..|.+
T Consensus        11 C~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHH
Confidence            5555556655555555543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.46  E-value=0.35  Score=23.24  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=12.1

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCC
Q psy11318        115 QCNECSTSKDYLTKRDLRRHMKLHFN  140 (263)
Q Consensus       115 ~C~~C~~~~~f~~~~~l~~H~~~h~~  140 (263)
                      .|..|.  ++|.+.-.+++|+...++
T Consensus         5 tclecm--rtfkssfsiwrhqvevhn   28 (41)
T d1wjpa3           5 TCLECM--RTFKSSFSIWRHQVEVHN   28 (41)
T ss_dssp             EEGGGT--EECSSHHHHHHHHHHTSC
T ss_pred             cHHHHH--HHHHHHHHHHHhhheecc
Confidence            444454  555555555555544333

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.49  Score=21.22  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=13.5

Q ss_pred             CcCCCcCCCHHHHHHHHHHhc
Q psy11318         89 SECPKTFASRHSLKNHILKIH  109 (263)
Q Consensus        89 ~~C~~~f~~~~~l~~H~~~~~  109 (263)
                      +.|++.|.++.-|..|.+..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            347777777777776666544

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.51  Score=22.64  Aligned_cols=23  Identities=30%  Similarity=0.634  Sum_probs=13.3

Q ss_pred             ccCCCccccCChhHHHHHHHHhc
Q psy11318         31 QCEECPKDFSTRKYLTQHQNAIH   53 (263)
Q Consensus        31 ~C~~C~~~f~~~~~l~~H~~~~~   53 (263)
                      .|-.|-+.|++...+++|+-..|
T Consensus         5 tclecmrtfkssfsiwrhqvevh   27 (41)
T d1wjpa3           5 TCLECMRTFKSSFSIWRHQVEVH   27 (41)
T ss_dssp             EEGGGTEECSSHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHhhheec
Confidence            45556666666666666655444

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.86  E-value=0.4  Score=21.59  Aligned_cols=16  Identities=13%  Similarity=0.534  Sum_probs=9.4

Q ss_pred             chhhhcChHHHHHHHh
Q psy11318        149 CSKFYIQESDLMEHMA  164 (263)
Q Consensus       149 C~~~f~~~~~l~~H~~  164 (263)
                      |+..|.++.+++.|..
T Consensus        10 cdl~fttkanmkkhfn   25 (31)
T d1tf3a3          10 CDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CCCEESSHHHHHHHHH
T ss_pred             cceEEeehHHHHHHHh
Confidence            5566666666666544