Psyllid ID: psy11344

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------

VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKERKPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHYTTEETKLSHEDKSQ

cHHccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccccEEEEcccccccccccEEEEEEcccccccccccccEEEEEEEccccccEEEEEcccEEEEccccccccccccccEEcHHHHHcccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHccccccccccccccccccccc

cHHHHHHHHccccEccccccEEEEEccccccHHHHHcHHHHHHHcccccccHHcHHHHHHHHHHHHHHHcccccccccccEEcccHHHHHHHHHHHHHHHcccccccccEEEcccccccccEEEEEccHHHccccccEEEEEEEcccEEEcccEEEEEEEEEEEccccEEEEEEcccEEEEEEEEcccccccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHEEcHHEEEccccccEEEEEccccccccccccHccHHHHHHHHHHccccccccHcccccccHHHHHHHHccccHcccccccccHHHcccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccEEEEccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEccHHHcccccccHHHccHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccc

vcvergwreydcnslkdnnnwnlwwrtsgfpvshykqlknnqytnhipkassicrKDQLTRYLKSMKKIFGSiynfspeaynlplEYTKLVAECSRQarnstyenpdnvwickpvgqsqgrgILLFQRLSELVYESNAVVQQYVknplliggykfdlrlyvcvpsfhpltIFVYREglarfgtdkfslanldnpfahltnsslnklgpgygttkervgsgckWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIAselsaipqtkncfeffgfdilvdsslnpwllesqpdtapgtnkdlrlgtwnvqtlhkpgafdnlIMEASRYNLDILAIQEtrwigteqeqqteeitpetaevedepptmQEIENAIKRLknnktpgsdeITSELLKKGGSTIKEELHKLITKCWKeeiipnkwkerkplfhntartfrsskqsnkwgngkdwskiepnegnwtriypytypdqtdnvdsdkALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTslgmktevnlspalandcevdpavkkpmlhdmfdllglpvcntgLSLFTLWTSLAQRhytteetklshedksq

vcvergwreydcnslkdnnnwnlWWRTSGFPVSHYKQLKNNqytnhipkassicrKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQArnstyenpdnvwICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIgteqeqqteeitpetaevedepptMQEIENAIKrlknnktpgsdeITSELLKKGGSTIKEELHKLITKCWkeeiipnkwkerkplfhntartfrsskqsnkwgngkdwskiepnegNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHYtteetklshedksq

VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGteqeqqteeitpetaeVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKERKPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHYTTEETKLSHEDKSQ

***ERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLE**********KDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIG********************************************************IKEELHKLITKCWKEEIIPNKWKERKPLFHNT******************WSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHY**************

VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQAR****ENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIME**************************************************************************************************************************************************************************************************************************MLHDMFDLLGLPVCNTGLSLFTLWTSLAQ*****************

VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGT********************PTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKERKPLFHNTART************GKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHY**************

VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWI*******TEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKER********************************EGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLWTSLAQRH***************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		586	2.2.26 [Sep-21-2011]
Q9BWV7		592	Probable tubulin polyglut	yes	N/A	0.481	0.476	0.472	6e-77
A4Q9E4		540	Probable tubulin polyglut	yes	N/A	0.484	0.525	0.461	5e-75
A4Q9E8		822	Tubulin polyglutamylase T	no	N/A	0.484	0.345	0.359	7e-47
Q5R978		1299	Tubulin polyglutamylase T	no	N/A	0.467	0.210	0.353	2e-45
Q6EMB2		1281	Tubulin polyglutamylase T	no	N/A	0.467	0.213	0.353	2e-45
Q6EEF3		1299	Tubulin polyglutamylase T	N/A	N/A	0.467	0.210	0.35	3e-45
Q8N841		843	Tubulin polyglutamylase T	no	N/A	0.489	0.340	0.353	3e-45
Q8CHB8		1328	Tubulin polyglutamylase T	no	N/A	0.467	0.206	0.35	6e-45
Q641W7		461	Probable tubulin polyglut	no	N/A	0.491	0.624	0.303	3e-42
Q3SZH6		461	Probable tubulin polyglut	no	N/A	0.491	0.624	0.301	8e-42

>sp\|Q9BWV7\|TTLL2_HUMAN Probable tubulin polyglutamylase TTLL2 OS=Homo sapiens GN=TTLL2 PE=5 SV=3	Back alignment and function desciption

 Score =  288 bits (738), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/290 (47%), Positives = 194/290 (66%), Gaps = 8/290 (2%)

Query: 1   VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLT 60
           V +ERGW ++D    ++  +WNL+WRTS F ++ +  +K  Q  NH P  + + RKD L 
Sbjct: 102 VLLERGWNKFDKQE-QNAEDWNLYWRTSSFRMTEHNSVKPWQQLNHHPGTTKLTRKDCLA 160

Query: 61  RYLKSMKKIFG-SIYNFSPEAYNLPLEYTKLVAEC--SRQARNSTYENPDNVWICKPVGQ 117
           ++LK M++++G S+Y F P  + +P +YTK VAE    RQ   + +    + WICKP   
Sbjct: 161 KHLKHMRRMYGTSLYQFIPLTFVMPNDYTKFVAEYFQERQMLGTKH----SYWICKPAEL 216

Query: 118 SQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREG 177
           S+GRGIL+F    + +++   +VQ+Y+ NPLLIG YK DLR+YVCV  F PLTI+VY+EG
Sbjct: 217 SRGRGILIFSDFKDFIFDDMYIVQKYISNPLLIGRYKCDLRIYVCVTGFKPLTIYVYQEG 276

Query: 178 LARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNI 237
           L RF T+KF L+NL N +AHLTNSS+NK G  Y   KE +G GCKW+LS+   YL   ++
Sbjct: 277 LVRFATEKFDLSNLQNNYAHLTNSSINKSGASYEKIKEVIGHGCKWTLSRFFSYLRSWDV 336

Query: 238 QDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLE 287
            D LLW++I  +++LTI +   ++P   NCFE FGFDIL+D +L PWLLE
Sbjct: 337 DDLLLWKKIHRMVILTILAIAPSVPFAANCFELFGFDILIDDNLKPWLLE 386

Probable tubulin polyglutamylase that forms polyglutamate side chains on tubulin. Probably acts when complexed with other proteins.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|A4Q9E4\|TTLL2_MOUSE Probable tubulin polyglutamylase TTLL2 OS=Mus musculus GN=Ttll2 PE=2 SV=1	Back alignment and function description

>sp\|A4Q9E8\|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1	Back alignment and function description

>sp\|Q5R978\|TTLL5_PONAB Tubulin polyglutamylase TTLL5 OS=Pongo abelii GN=TTLL5 PE=2 SV=1	Back alignment and function description

>sp\|Q6EMB2\|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3	Back alignment and function description

>sp\|Q6EEF3\|TTLL5_CHLAE Tubulin polyglutamylase TTLL5 OS=Chlorocebus aethiops GN=TTLL5 PE=2 SV=2	Back alignment and function description

>sp\|Q8N841\|TTLL6_HUMAN Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2	Back alignment and function description

>sp\|Q8CHB8\|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3	Back alignment and function description

>sp\|Q641W7\|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus GN=Ttll9 PE=2 SV=1	Back alignment and function description

>sp\|Q3SZH6\|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		586
270007898		579	hypothetical protein TcasGA2_TC014642 [T	0.865	0.875	0.455	1e-127
189237761		548	PREDICTED: similar to predicted protein	0.865	0.925	0.455	1e-127
307213995		530	Probable tubulin polyglutamylase TTLL2 [	0.824	0.911	0.446	1e-122
383863180		529	PREDICTED: probable tubulin polyglutamyl	0.824	0.913	0.454	1e-122
307178150		523	Probable tubulin polyglutamylase TTLL2 [	0.827	0.927	0.436	1e-121
340720132		533	PREDICTED: probable tubulin polyglutamyl	0.825	0.908	0.450	1e-121
350408326		533	PREDICTED: probable tubulin polyglutamyl	0.825	0.908	0.448	1e-121
328786661		530	PREDICTED: probable tubulin polyglutamyl	0.829	0.916	0.453	1e-120
322784911		530	hypothetical protein SINV_00175 [Solenop	0.827	0.915	0.431	1e-119
156542865		536	PREDICTED: probable tubulin polyglutamyl	0.827	0.904	0.423	1e-117

>gi\|270007898\|gb\|EFA04346.1\| hypothetical protein TcasGA2_TC014642 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/540 (45%), Positives = 336/540 (62%), Gaps = 33/540 (6%)

Query: 1   VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLT 60
           VC+ERGWRE++ +S    + WNLWWRTSGFPVSH++ L   QY NHIPK S+ICRKD L 
Sbjct: 59  VCLERGWREFNSDS---GDQWNLWWRTSGFPVSHHRNLYAWQYINHIPKGSAICRKDNLV 115

Query: 61  RYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYEN--PDN-------VWI 111
           RYL+ M+K++GSIY+FSP  YNLPLEYTKL AECSR  R  + +N  P +       +WI
Sbjct: 116 RYLRCMRKVYGSIYDFSPHGYNLPLEYTKLAAECSRGGRPFSSKNDPPHDKLLEDKPIWI 175

Query: 112 CKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTI 171
           CKPV QSQGRGI LF++LSEL Y+SN +VQ+Y++ PLLIGGYKFDLRLYVC+PS+HP+TI
Sbjct: 176 CKPVAQSQGRGIFLFRKLSELSYDSNTIVQRYIEKPLLIGGYKFDLRLYVCIPSYHPVTI 235

Query: 172 FVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQY 231
           ++YREGLARFGTDKFSL +L NPF HLTNSS+NKLGPGY   K+R+GSGCKW+L QLR+Y
Sbjct: 236 YMYREGLARFGTDKFSLNDLRNPFRHLTNSSINKLGPGYTEMKDRIGSGCKWTLRQLRRY 295

Query: 232 LYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPD 291
             Q  I DWLLWQRI+S+++LT+ S ++ IP T NCFEFFGFD+L+DSSL PWLLE   +
Sbjct: 296 FQQAGISDWLLWQRIASLVILTVLSHVNQIPPTVNCFEFFGFDVLIDSSLRPWLLEV--N 353

Query: 292 TAPGTNKDLRLGTWNVQTLHKP---GAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTE 348
            +P  + D        +++ KP     FD L +      L +  I          E++ +
Sbjct: 354 LSPALSNDCDAD----RSVKKPMLHDMFDLLGLPLYNTGLSVFDIFLDEPNENNNEEKPK 409

Query: 349 EITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIK--EELHKLIT 406
            +  ++        T+  +  A +  + ++   + +I+S       + ++        I 
Sbjct: 410 NVAFKS--------TLSVLNAAGRWRRKHRKMSAKQISSRSSSAVRAKVRTVSATSPKIV 461

Query: 407 KCWKEEIIPNKWKERKPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYP 466
              K  I   K K    L  N     R +  + KWGNG+DW+    +EG W RI+P T  
Sbjct: 462 NLPKVNIHLPKTKPNYDLNKNDEEDLRKTGIAKKWGNGRDWNFATSSEGGWVRIWPMTI- 520

Query: 467 DQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPA 526
            +  N +    ++ +   V KF K +KE+ + +    + +LN  LQ  + M  E+ + P 
Sbjct: 521 -EQPNKNCFLTVKQMVSKVIKFTKSAKELAKNHPTASECQLNEFLQQEMDMSGEIWIPPV 579

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|189237761\|ref\|XP_001812872.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|307213995\|gb\|EFN89202.1\| Probable tubulin polyglutamylase TTLL2 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|383863180\|ref\|XP_003707060.1\| PREDICTED: probable tubulin polyglutamylase TTLL2-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307178150\|gb\|EFN66958.1\| Probable tubulin polyglutamylase TTLL2 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|340720132\|ref\|XP_003398497.1\| PREDICTED: probable tubulin polyglutamylase TTLL2-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350408326\|ref\|XP_003488369.1\| PREDICTED: probable tubulin polyglutamylase TTLL2-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|328786661\|ref\|XP_624352.2\| PREDICTED: probable tubulin polyglutamylase TTLL2-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|322784911\|gb\|EFZ11682.1\| hypothetical protein SINV_00175 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|156542865\|ref\|XP_001600453.1\| PREDICTED: probable tubulin polyglutamylase TTLL2-like [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		586
ZFIN\|ZDB-GENE-041014-204		575	si:ch211-256l9.4 "si:ch211-256	0.476	0.485	0.503	6.4e-85
ZFIN\|ZDB-GENE-041014-297		577	ttll2 "tubulin tyrosine ligase	0.476	0.483	0.503	6.4e-85
UNIPROTKB\|Q9BWV7		592	TTLL2 "Probable tubulin polygl	0.484	0.479	0.468	1.7e-80
RGD\|1305200		540	Ttll2 "tubulin tyrosine ligase	0.484	0.525	0.468	7.4e-80
UNIPROTKB\|Q0IIC7		528	TTLL2 "Uncharacterized protein	0.501	0.556	0.436	1.1e-78
MGI\|MGI:3644030		540	Ttll2 "tubulin tyrosine ligase	0.484	0.525	0.465	1.4e-78
UNIPROTKB\|F1Q149		530	TTLL2 "Uncharacterized protein	0.484	0.535	0.458	1.7e-78
UNIPROTKB\|F1NR75		1313	TTLL5 "Uncharacterized protein	0.493	0.220	0.359	9e-50
UNIPROTKB\|F1P1K7		525	TTLL13 "Uncharacterized protei	0.452	0.504	0.378	4.2e-49
UNIPROTKB\|G3V2J9		1281	TTLL5 "Tubulin polyglutamylase	0.470	0.215	0.366	9.4e-49

ZFIN\|ZDB-GENE-041014-204 si:ch211-256l9.4 "si:ch211-256l9.4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 788 (282.4 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 145/288 (50%), Positives = 201/288 (69%)

Query:     1 VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLT 60
             V +ERGW E+D   ++   +WNL+WRTSGF  S Y+ +   Q  NH PK + + RKD L 
Sbjct:    24 VLLERGWEEFD-EEVQQEGDWNLYWRTSGFRNSDYENILPWQRLNHHPKVTHVTRKDYLV 82

Query:    61 RYLKSMKKIFGS-IYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQ 119
             R+L+ MK  FG+ +Y FSP  + LP EYTK +   ++   +S Y      WICKPV  S+
Sbjct:    83 RHLRRMKCAFGATLYGFSPSTFILPNEYTKFLGVYTKN-HSSRY------WICKPVDLSR 135

Query:   120 GRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179
             GRGI LF+ + +LVY+S+ +VQ+Y+ NPLLI GYKFDLR+YVCV SF PL I++++EGL 
Sbjct:   136 GRGIFLFEDIKDLVYDSSVIVQRYISNPLLISGYKFDLRIYVCVKSFSPLVIYMHQEGLV 195

Query:   180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQD 239
             RF T+K++LA+L N ++HLTN+S+N+ G  Y   KERVG GCKW+LSQ R +L++ ++ +
Sbjct:   196 RFATEKYTLASLHNLYSHLTNTSINRFGLCYAMDKERVGKGCKWTLSQFRCFLHKQDVNE 255

Query:   240 WLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLE 287
              LLW +IS+I+ LT+   +  IP + NC E  GFDIL+DSS  PWLLE
Sbjct:   256 LLLWHKISNIVTLTLLKAVPCIPSSPNCLELLGFDILIDSSYKPWLLE 303

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

ZFIN\|ZDB-GENE-041014-297 ttll2 "tubulin tyrosine ligase-like family, member 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BWV7 TTLL2 "Probable tubulin polyglutamylase TTLL2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1305200 Ttll2 "tubulin tyrosine ligase-like family, member 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0IIC7 TTLL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:3644030 Ttll2 "tubulin tyrosine ligase-like family, member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q149 TTLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NR75 TTLL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1K7 TTLL13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V2J9 TTLL5 "Tubulin polyglutamylase TTLL5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		586
pfam03133		291	pfam03133, TTL, Tubulin-tyrosine ligase family	2e-66
cd09076		236	cd09076, L1-EN, Endonuclease domain (L1-EN) of the	4e-07

>gnl\|CDD\|217380 pfam03133, TTL, Tubulin-tyrosine ligase family	Back alignment and domain information

 Score =  217 bits (556), Expect = 2e-66
 Identities = 101/270 (37%), Positives = 147/270 (54%), Gaps = 23/270 (8%)

Query: 45  NHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYE 104
           NH P +  I RKD L + +K     FG  ++F P  + LP +          +  +   +
Sbjct: 12  NHFPGSYEITRKDLLWKNIKRQPCDFGRKFDFLPRTFILPTDL--------AEFVDYFED 63

Query: 105 NPDNVWICKPVGQSQGRGILLFQRLSELVYESN---AVVQQYVKNPLLIGGYKFDLRLYV 161
           N  N WI KP   ++GRGI +   LS+++ +      VVQ+Y++ PLLI G KFD+RLYV
Sbjct: 64  NERNTWIVKPSASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIRLYV 123

Query: 162 CVPSFHPLTIFVYREGLARFGTDKFS--LANLDNPFAHLTNSSLNKLGPGYGTTKERVGS 219
            V S +PL ++VYREGL RF + K+S  +++LD+   HLTN S+ K             +
Sbjct: 124 LVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNE-PN 182

Query: 220 GCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTI-ASELSAIPQT----KNCFEFFGFD 274
           G KWSL    +YL + + ++  +W  I SII+ TI A+E+ A         NCFE +GFD
Sbjct: 183 GHKWSLFNFWKYLEEKDKEE--IWLEIESIIIKTILAAEVEASRLNVQPLYNCFELYGFD 240

Query: 275 ILVDSSLNPWLLE--SQPDTAPGTNKDLRL 302
            ++D +L PWLLE  + P     T  D RL
Sbjct: 241 FMIDENLKPWLLEVNASPSLHSTTKLDARL 270

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

>gnl\|CDD\|197310 cd09076, L1-EN, Endonuclease domain (L1-EN) of the non-LTR retrotransposon LINE-1 (L1), and related domains	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		586
KOG2156\|consensus		662		100.0
PF03133		292	TTL: Tubulin-tyrosine ligase family; InterPro: IPR	100.0
KOG2157\|consensus		497		100.0
KOG2158\|consensus		565		100.0
KOG2155\|consensus		631		99.97
PF14398		262	ATPgrasp_YheCD: YheC/D like ATP-grasp	99.9
cd01650		220	RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea	99.13
PF08443		190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	98.93
cd01651		226	RT_G2_intron RT_G2_intron: Reverse transcriptases	98.92
COG0189		318	RimK Glutathione synthase/Ribosomal protein S6 mod	98.81
TIGR02291		317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	98.79
PLN02941		328	inositol-tetrakisphosphate 1-kinase	98.77
TIGR00768		277	rimK_fam alpha-L-glutamate ligases, RimK family. T	98.76
PRK10446		300	ribosomal protein S6 modification protein; Provisi	98.69
PF00078		214	RVT_1: Reverse transcriptase (RNA-dependent DNA po	98.69
PRK05246		316	glutathione synthetase; Provisional	98.59
TIGR02144		280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	98.51
PF13535		184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	98.5
PRK01372		304	ddl D-alanine--D-alanine ligase; Reviewed	98.4
PF14397		285	ATPgrasp_ST: Sugar-transfer associated ATP-grasp	98.36
PF02655		161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	98.32
PRK12458		338	glutathione synthetase; Provisional	98.29
PRK14568		343	vanB D-alanine--D-lactate ligase; Provisional	98.29
PRK01966		333	ddl D-alanyl-alanine synthetase A; Reviewed	98.28
PF07478		203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	98.28
PRK14571		299	D-alanyl-alanine synthetase A; Provisional	98.25
TIGR01205		315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	98.22
PRK14569		296	D-alanyl-alanine synthetase A; Provisional	98.15
TIGR01380		312	glut_syn glutathione synthetase, prokaryotic. This	98.14
TIGR03103		547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	98.14
PF02955		173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	98.14
PRK14572		347	D-alanyl-alanine synthetase A; Provisional	98.02
PRK14570		364	D-alanyl-alanine synthetase A; Provisional	97.95
COG1821		307	Predicted ATP-utilizing enzyme (ATP-grasp superfam	97.94
TIGR01161		352	purK phosphoribosylaminoimidazole carboxylase, Pur	97.9
cd03487		214	RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr	97.88
PLN02257		434	phosphoribosylamine--glycine ligase	97.75
PRK12767		326	carbamoyl phosphate synthase-like protein; Provisi	97.65
COG1181		317	DdlA D-alanine-D-alanine ligase and related ATP-gr	97.64
PRK06019		372	phosphoribosylaminoimidazole carboxylase ATPase su	97.63
PRK07206		416	hypothetical protein; Provisional	97.61
PRK06849		389	hypothetical protein; Provisional	97.61
TIGR01142		380	purT phosphoribosylglycinamide formyltransferase 2	97.59
PRK13278		358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	97.49
PRK14016		727	cyanophycin synthetase; Provisional	97.47
PRK08462		445	biotin carboxylase; Validated	97.46
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	97.44
TIGR00514		449	accC acetyl-CoA carboxylase, biotin carboxylase su	97.43
PRK05586		447	biotin carboxylase; Validated	97.42
PRK13789		426	phosphoribosylamine--glycine ligase; Provisional	97.38
TIGR01235		1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	97.37
PRK06524		493	biotin carboxylase-like protein; Validated	97.35
PRK12833		467	acetyl-CoA carboxylase biotin carboxylase subunit;	97.29
PRK12999		1146	pyruvate carboxylase; Reviewed	97.26
PRK08463		478	acetyl-CoA carboxylase subunit A; Validated	97.26
TIGR00877		423	purD phosphoribosylamine--glycine ligase. This enz	97.26
PRK00885		420	phosphoribosylamine--glycine ligase; Provisional	97.26
PRK14573		809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	97.26
PRK13790		379	phosphoribosylamine--glycine ligase; Provisional	97.26
TIGR02068		864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	97.2
PRK06111		450	acetyl-CoA carboxylase biotin carboxylase subunit;	97.19
PRK09288		395	purT phosphoribosylglycinamide formyltransferase 2	97.19
PRK08654		499	pyruvate carboxylase subunit A; Validated	97.18
PRK13277		366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	97.18
PRK08591		451	acetyl-CoA carboxylase biotin carboxylase subunit;	97.16
PRK07178		472	pyruvate carboxylase subunit A; Validated	97.13
PLN02948		577	phosphoribosylaminoimidazole carboxylase	97.08
PF15632		329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	97.07
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	97.01
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	96.96
PRK02186		887	argininosuccinate lyase; Provisional	96.92
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	96.92
PRK06395		435	phosphoribosylamine--glycine ligase; Provisional	96.79
PF05770		307	Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-	96.69
COG0439		449	AccC Biotin carboxylase [Lipid metabolism]	96.66
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	96.22
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	96.18
PRK05784		486	phosphoribosylamine--glycine ligase; Provisional	96.16
PLN02735		1102	carbamoyl-phosphate synthase	96.04
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071		194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	95.99
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	95.93
PLN02735		1102	carbamoyl-phosphate synthase	95.89
TIGR02712		1201	urea_carbox urea carboxylase. Members of this fami	95.78
PF14403		445	CP_ATPgrasp_2: Circularly permuted ATP-grasp type	95.54
cd01709		346	RT_like_1 RT_like_1: A subfamily of reverse transc	95.51
KOG0369\|consensus		1176		95.47
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	95.17
COG4770		645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	94.86
PF02750		203	Synapsin_C: Synapsin, ATP binding domain; InterPro	94.84
cd01646		158	RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip	94.82
COG1038		1149	PycA Pyruvate carboxylase [Energy production and c	94.29
PF02786		211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	94.08
KOG0238\|consensus		670		93.92
COG2232		389	Predicted ATP-dependent carboligase related to bio	93.46
COG2308		488	Uncharacterized conserved protein [Function unknow	92.84
KOG4768\|consensus		796		92.46
COG0151		428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	92.02
PF02222		172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	91.81
COG0027		394	PurT Formate-dependent phosphoribosylglycinamide f	90.69
KOG2158\|consensus		565		85.26
KOG3895\|consensus		488		83.2

>KOG2156\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.1e-63  Score=507.05  Aligned_cols=301  Identities=35%  Similarity=0.627  Sum_probs=271.5

Q ss_pred             CcccCCcEEecCCCCCCCCCeEEEeccCCCCchhhccCCCCceecccCCCCcccccHHHHHHHHHHHHHhCC-CCceeec
Q psy11344          1 VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGS-IYNFSPE   79 (586)
Q Consensus         1 ~~~~~gw~~~~~~~~~~~~~~~l~W~~~~~~~~~~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~-~~~~~P~   79 (586)
                      |+.+-||+++..+     ++|..+|+. +.+...|+.+++||+||||||+..|+|||.|++++.+++.+++. .+.|+|+
T Consensus       212 vl~~sgfkivk~n-----~dw~g~Wg~-h~ksp~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPr  285 (662)
T KOG2156|consen  212 VLANSGFKIVKVN-----DDWMGVWGH-HLKSPSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPR  285 (662)
T ss_pred             HHHhcccEEeccc-----chHHHHhhh-hcCCchhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccce
Confidence            3567799999766     789999998 45666899999999999999999999999999999999999986 8999999


Q ss_pred             cccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhccCccccCCceeeeeE
Q psy11344         80 AYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRL  159 (586)
Q Consensus        80 T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~~PlLi~g~KFDlR~  159 (586)
                      ||+||.|.++|.+.+.++        ....|||||.+.+||.||.++++.++++.+++.|||+||++|+||+|.|||+|+
T Consensus       286 tyilP~d~e~lrk~w~~n--------asr~wIVkppasaRg~gIrv~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrl  357 (662)
T KOG2156|consen  286 TYILPADREELRKYWEKN--------ASRLWIVKPPASARGIGIRVINKWSQFPKDRPLVVQKYIERPLLINGSKFDLRL  357 (662)
T ss_pred             eeeccccHHHHHHHHhhC--------ccccEEecCcccccCcceEeccchhhCCCcccHHHHHHhhcceeecCcceeEEE
Confidence            999999999999988654        346699999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccCcEEEEEccCeeeeecCCCCC--CCCCCCCccccccccccCCCCCCCccc-ccCCccccCHHHHHHHHHhcC
Q psy11344        160 YVCVPSFHPLTIFVYREGLARFGTDKFSL--ANLDNPFAHLTNSSLNKLGPGYGTTKE-RVGSGCKWSLSQLRQYLYQNN  236 (586)
Q Consensus       160 yvlv~s~~pl~~y~~~~g~~R~a~~~y~~--~~~~~~~~HLTN~~i~k~~~~~~~~~~-~~~~g~~~s~~~l~~~l~~~~  236 (586)
                      ||.|||++||+||+|++|++|||+.+|+.  +++.|.+||+|||+++|.+. |..++. ..-.|.||++..+..++.++|
T Consensus       358 Yv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qG  436 (662)
T KOG2156|consen  358 YVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQG  436 (662)
T ss_pred             EEEEeecCceEEEEeccceeeeccccCCcccccccceeEEeccccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhcC
Confidence            99999999999999999999999999986  57789999999999999877 654432 224789999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhccC--------CCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcccccccccc
Q psy11344        237 IQDWLLWQRISSIIVLTIASELSAI--------PQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQ  308 (586)
Q Consensus       237 ~~~~~~~~~i~~~i~~~~~~~~~~~--------~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d~~~~nv~  308 (586)
                      .+...+|.+|+++|++++.+.+..+        .....||||+||||++|++++|||||||-+||++..+++|      -
T Consensus       437 vdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld------~  510 (662)
T KOG2156|consen  437 VDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLD------C  510 (662)
T ss_pred             CCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEecccccccCCCcc------c
Confidence            9999999999999999999987654        3467899999999999999999999999999999999999      7


Q ss_pred             ccccCCcccccccc
Q psy11344        309 TLHKPGAFDNLIME  322 (586)
Q Consensus       309 ~~k~~~~~d~l~~~  322 (586)
                      .+|.+.+-++|++.
T Consensus       511 ~vk~~li~~vlNla  524 (662)
T KOG2156|consen  511 SVKAPLIQDVLNLA  524 (662)
T ss_pred             hhhhHHHHHHHHhc
Confidence            88888666665543

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed	Back alignment and domain information

>KOG2157\|consensus	Back alignment and domain information

>KOG2158\|consensus	Back alignment and domain information

>KOG2155\|consensus	Back alignment and domain information

>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp	Back alignment and domain information

>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)	Back alignment and domain information

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []	Back alignment and domain information

>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	Back alignment and domain information

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein	Back alignment and domain information

>PLN02941 inositol-tetrakisphosphate 1-kinase	Back alignment and domain information

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family	Back alignment and domain information

>PRK10446 ribosomal protein S6 modification protein; Provisional	Back alignment and domain information

>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons	Back alignment and domain information

>PRK05246 glutathione synthetase; Provisional	Back alignment and domain information

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX	Back alignment and domain information

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A	Back alignment and domain information

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed	Back alignment and domain information

>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp	Back alignment and domain information

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []	Back alignment and domain information

>PRK12458 glutathione synthetase; Provisional	Back alignment and domain information

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional	Back alignment and domain information

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed	Back alignment and domain information

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6	Back alignment and domain information

>PRK14571 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase	Back alignment and domain information

>PRK14569 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>TIGR01380 glut_syn glutathione synthetase, prokaryotic	Back alignment and domain information

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103	Back alignment and domain information

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6	Back alignment and domain information

>PRK14572 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>PRK14570 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]	Back alignment and domain information

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein	Back alignment and domain information

>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	Back alignment and domain information

>PLN02257 phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional	Back alignment and domain information

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	Back alignment and domain information

>PRK07206 hypothetical protein; Provisional	Back alignment and domain information

>PRK06849 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2	Back alignment and domain information

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional	Back alignment and domain information

>PRK14016 cyanophycin synthetase; Provisional	Back alignment and domain information

>PRK08462 biotin carboxylase; Validated	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit	Back alignment and domain information

>PRK05586 biotin carboxylase; Validated	Back alignment and domain information

>PRK13789 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>TIGR01235 pyruv_carbox pyruvate carboxylase	Back alignment and domain information

>PRK06524 biotin carboxylase-like protein; Validated	Back alignment and domain information

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional	Back alignment and domain information

>PRK12999 pyruvate carboxylase; Reviewed	Back alignment and domain information

>PRK08463 acetyl-CoA carboxylase subunit A; Validated	Back alignment and domain information

>TIGR00877 purD phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK00885 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional	Back alignment and domain information

>PRK13790 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>TIGR02068 cya_phycin_syn cyanophycin synthetase	Back alignment and domain information

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated	Back alignment and domain information

>PRK08654 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional	Back alignment and domain information

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>PRK07178 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PLN02948 phosphoribosylaminoimidazole carboxylase	Back alignment and domain information

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>PRK02186 argininosuccinate lyase; Provisional	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PRK06395 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase	Back alignment and domain information

>COG0439 AccC Biotin carboxylase [Lipid metabolism]	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>PRK05784 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>TIGR02712 urea_carbox urea carboxylase	Back alignment and domain information

>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2	Back alignment and domain information

>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs)	Back alignment and domain information

>KOG0369\|consensus	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	Back alignment and domain information

>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments)	Back alignment and domain information

>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	Back alignment and domain information

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)	Back alignment and domain information

>KOG0238\|consensus	Back alignment and domain information

>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]	Back alignment and domain information

>COG2308 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4768\|consensus	Back alignment and domain information

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Back alignment and domain information

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG2158\|consensus	Back alignment and domain information

>KOG3895\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		586
4i4t_F		384	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		2e-18
3tig_A		380	Tubulin Tyrosine Ligase Length = 380		8e-18

>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384

Back alignment and structure

Iteration: 1

Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 42/292 (14%) Query: 42 QYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNL-PLEYTKLVA-------- 92 Q N+ A +CRK L + +K+ ++ S F PE+Y + P VA Sbjct: 60 QLVNYYRGADKLCRKASLVKLIKTSPELSESCTWF-PESYVIYPTNLKTPVAPAQNGIRH 118 Query: 93 ----------ECSRQARNSTYENPD-NVWICKPVGQSQGRGILLFQRLSELV-----YES 136 E A N E + NVWI K ++G GIL+ SEL+ Sbjct: 119 LINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQ 178 Query: 137 NAVVQQYVKNPLLI--GGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNP 194 V+Q+Y++ PLL+ G KFD+R +V V H I++YREG+ R ++ ++ AN + Sbjct: 179 VHVIQKYLEKPLLLEPGHRKFDIRSWVLVD--HLYNIYLYREGVLRTSSEPYNSANFQDK 236 Query: 195 FAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQ---NNIQDWLLWQRISSII- 250 HLTN + K Y R G + + QYL +++ +L Q I II Sbjct: 237 TCHLTNHCIQK---EYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQ-IKHIIR 292 Query: 251 --VLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 ++ I +S F+ FGFD +VD L WL+E + AP + L Sbjct: 293 SCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEV--NGAPACAQKL 342

PyMOL of 4i4t

>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		586
3tig_A		380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	5e-76
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1wdu_A		245	TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA	9e-04

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380	Back alignment and structure

 Score =  245 bits (627), Expect = 5e-76
 Identities = 79/339 (23%), Positives = 136/339 (40%), Gaps = 52/339 (15%)

Query: 1   VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHY--KQLKNNQYTNHIPKASSICRKDQ 58
           +     W+       +DN  +NL               +    Q  N+   A  +CRK  
Sbjct: 24  LLASGQWKRLK----RDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKAS 79

Query: 59  LTRYLKSMKKI------FGSIYNFSPEAYNLPL-----------------EYTKLVAECS 95
           L + +K+  ++      F   Y   P     P                  E  +  +  +
Sbjct: 80  LVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFN 139

Query: 96  RQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV-----YESNAVVQQYVKNPLLI 150
           ++  N       NVWI K    ++G GIL+    +EL+          V+Q+Y+++PLL+
Sbjct: 140 KKKEN----EEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLL 195

Query: 151 --GGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGP 208
             G  KFD+R +V V +     I++YREG+ R  ++ +S  N  +  +HLTN  + K   
Sbjct: 196 EPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQK--- 250

Query: 209 GYGTTKERVGSGCKWSLSQLRQYLYQNNIQDW--LLWQRISSIIVLTIAS---ELSAIPQ 263
            +     R   G +    +  QYL  +   +    +  +I  II + ++     +S    
Sbjct: 251 EHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYL 310

Query: 264 TKNCFEFFGFDILVDSSLNPWLLE--SQPDTAPGTNKDL 300
             + F+ FGFD +VD +L  WL+E    P  A     +L
Sbjct: 311 PYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAEL 349

PyMOL of 3tig

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Length = 245	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		586
3tig_A		380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	100.0
2q7d_A		346	Inositol-tetrakisphosphate 1-kinase; inositol kina	98.68
1i7n_A		309	Synapsin II; synapse, phosphorylation, neuropeptid	98.63
4eg0_A		317	D-alanine--D-alanine ligase; structural genomics,	98.56
1iow_A		306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	98.55
1pk8_A		422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	98.53
2p0a_A		344	Synapsin-3, synapsin III; neurotransmitter release	98.48
3i12_A		364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	98.43
3se7_A		346	VANA; alpha-beta structure, D-alanine-D-lactate li	98.41
1e4e_A		343	Vancomycin/teicoplanin A-type resistance protein;	98.41
1z2n_X		324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	98.4
4fu0_A		357	D-alanine--D-alanine ligase 7; vancomycin resistan	98.39
2i87_A		364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	98.39
3k3p_A		383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	98.38
3e5n_A		386	D-alanine-D-alanine ligase A; bacterial blight; 2.	98.37
1uc8_A		280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	98.34
3r5x_A		307	D-alanine--D-alanine ligase; alpha-beta structure,	98.31
2fb9_A		322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	98.29
3tqt_A		372	D-alanine--D-alanine ligase; cell envelope; 1.88A	98.29
2r85_A		334	PURP protein PF1517; ATP-grAsp superfamily, unknow	98.25
3ax6_A		380	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.21
1ehi_A		377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	98.21
3k5i_A		403	Phosphoribosyl-aminoimidazole carboxylase; purine	98.12
3q2o_A		389	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.1
1gsa_A		316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	98.09
3lwb_A		373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	98.07
2pvp_A		367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	98.06
3ouz_A		446	Biotin carboxylase; structural genomics, center fo	98.0
2z04_A		365	Phosphoribosylaminoimidazole carboxylase ATPase su	97.96
1ulz_A		451	Pyruvate carboxylase N-terminal domain; biotin car	97.96
4dim_A		403	Phosphoribosylglycinamide synthetase; structural g	97.92
3orq_A		377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.92
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	97.9
2vpq_A		451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	97.9
4e4t_A		419	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.87
1kjq_A		391	GART 2, phosphoribosylglycinamide formyltransferas	97.83
2ip4_A		417	PURD, phosphoribosylamine--glycine ligase; GAR syn	97.83
3vot_A		425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	97.83
2pn1_A		331	Carbamoylphosphate synthase large subunit; ZP_0053	97.72
2yw2_A		424	Phosphoribosylamine--glycine ligase; glycinamide r	97.71
2xcl_A		422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	97.7
2yrx_A		451	Phosphoribosylglycinamide synthetase; glycinamide	97.7
3aw8_A		369	PURK, phosphoribosylaminoimidazole carboxylase, AT	97.69
3mjf_A		431	Phosphoribosylamine--glycine ligase; structural ge	97.67
3lp8_A		442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	97.66
2dwc_A		433	PH0318, 433AA long hypothetical phosphoribosylglyc	97.66
3df7_A		305	Putative ATP-grAsp superfamily protein; putative p	97.65
2w70_A		449	Biotin carboxylase; ligase, ATP-binding, fatty aci	97.64
1w96_A		554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	97.58
3glk_A		540	Acetyl-COA carboxylase 2; ATP binding, alternative	97.56
3jrx_A		587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	97.55
2qk4_A		452	Trifunctional purine biosynthetic protein adenosi;	97.49
3t7a_A		330	Inositol pyrophosphate kinase; ATP-grAsp fold, tra	97.49
2dzd_A		461	Pyruvate carboxylase; biotin carboxylase, ligase;	97.49
3u9t_A		675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	97.39
3eth_A		355	Phosphoribosylaminoimidazole carboxylase ATPase su	97.35
3vmm_A		474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	97.35
1vkz_A		412	Phosphoribosylamine--glycine ligase; TM1250, struc	97.23
3n6r_A		681	Propionyl-COA carboxylase, alpha subunit; protein	97.16
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	97.09
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	96.99
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	96.92
3n6x_A		474	Putative glutathionylspermidine synthase; domain o	96.88
2qf7_A		1165	Pyruvate carboxylase protein; multi-domain, multi-	96.79
2r7k_A		361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	96.58
4ffl_A		363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.55
3hbl_A		1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	96.39
3va7_A		1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	96.31
2pbz_A		320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	96.08
2cqy_A		108	Propionyl-COA carboxylase alpha chain, mitochondri	95.16
3kyl_A		596	Telomerase reverse transcriptase; reverse transcri	94.9
2io8_A		619	Bifunctional glutathionylspermidine synthetase/ami	85.49

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*	Back alignment and structure

Probab=100.00  E-value=5.4e-64  Score=522.29  Aligned_cols=281  Identities=28%  Similarity=0.524  Sum_probs=208.3

Q ss_pred             CcccCC-cEEecCCCCCCCCCeEEEeccCCC-Cchhhcc-CCCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCcee
Q psy11344          1 VCVERG-WREYDCNSLKDNNNWNLWWRTSGF-PVSHYKQ-LKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFS   77 (586)
Q Consensus         1 ~~~~~g-w~~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~-l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~   77 (586)
                      ||+++| |+|+..++    .+|||+|++... |...+.. ..++|+||||||++.||||+.|+++|+++ +..+..++|+
T Consensus        23 vL~~~g~w~ev~~~~----~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~-~~~~~~~~f~   97 (380)
T 3tig_A           23 ILLASGQWKRLKRDN----PKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTS-PELTETCTWF   97 (380)
T ss_dssp             HHHHTTSEEECCTTC----SCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC-HHHHTTCTTS
T ss_pred             HHHhcCCeEEeCCCC----CceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHh-hhcccccCcC
Confidence            477899 99998763    689999998643 2222222 25789999999999999999999999995 4566789999


Q ss_pred             eccccC-Cc-----------------------cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh
Q psy11344         78 PEAYNL-PL-----------------------EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV  133 (586)
Q Consensus        78 P~T~~l-p~-----------------------e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~  133 (586)
                      |+||.| |.                       |+.+|++++.+...    .+.++.||+||.++++|+||.++++.+++.
T Consensus        98 P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~----~~~~~~wI~KP~~~srG~GI~l~~~~~~i~  173 (380)
T 3tig_A           98 PESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKE----NEEGNVWIAKSSSGAKGEGILISSDATELL  173 (380)
T ss_dssp             CCEEECCC------------------------CCHHHHHHHHHHHH----TTCCCCEEEEESCC----CCBCCSCSHHHH
T ss_pred             CcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhh----cCCCCeEEEeCCccCCCCCEEEeCCHHHHH
Confidence            999999 75                       45678888876532    356799999999999999999999999874


Q ss_pred             -----ccchhhhhhhccCcccc--CCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccccC
Q psy11344        134 -----YESNAVVQQYVKNPLLI--GGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKL  206 (586)
Q Consensus       134 -----~~~~~ivQ~YI~~PlLi--~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~  206 (586)
                           ....+|||+||+||+||  +|+|||||+||+|||  ||++|+|++|++|||+++|+.+++++.++||||+++||+
T Consensus       174 ~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~  251 (380)
T 3tig_A          174 DFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKE  251 (380)
T ss_dssp             HHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-----------------------
T ss_pred             HHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCccchhhhhhhccccccccc
Confidence                 34689999999999999  999999999999997  999999999999999999999999999999999999996


Q ss_pred             -CCCCCCcccccCCccccCHHHHHHHHHhc-CCc-hhHHHHHHHHHHHHHHHHhhccCCC---CCCcceEEeeeeeecCC
Q psy11344        207 -GPGYGTTKERVGSGCKWSLSQLRQYLYQN-NIQ-DWLLWQRISSIIVLTIASELSAIPQ---TKNCFEFFGFDILVDSS  280 (586)
Q Consensus       207 -~~~~~~~~~~~~~g~~~s~~~l~~~l~~~-~~~-~~~~~~~i~~~i~~~~~~~~~~~~~---~~~~Fel~G~D~liD~~  280 (586)
                       +++|...    +.|++|++++|.+||++. +.+ ...+|++|+++|..++.|+++.+..   ..+|||+||+|||||++
T Consensus       252 ~~~~y~~~----~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~  327 (380)
T 3tig_A          252 HSKNYGRY----EEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKN  327 (380)
T ss_dssp             ---------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTT
T ss_pred             cccccccc----cCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCC
Confidence             4667643    358899999999999875 333 2468999999999999998876643   36899999999999999


Q ss_pred             CCeEEEcccCCCCCCC
Q psy11344        281 LNPWLLESQPDTAPGT  296 (586)
Q Consensus       281 ~kpwLlEVN~~P~l~~  296 (586)
                      ++|||||||++|++..
T Consensus       328 l~~wllEVN~~P~~~q  343 (380)
T 3tig_A          328 LKVWLIEVNGAPACAQ  343 (380)
T ss_dssp             CCEEEEEEESSCCCCT
T ss_pred             CcEEEEEEeCCCCccH
Confidence            9999999999999974

PyMOL of 3tig

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X	Back alignment and structure

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*	Back alignment and structure

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A	Back alignment and structure

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*	Back alignment and structure

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*	Back alignment and structure

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}	Back alignment and structure

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*	Back alignment and structure

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}	Back alignment and structure

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*	Back alignment and structure

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*	Back alignment and structure

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}	Back alignment and structure

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*	Back alignment and structure

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}	Back alignment and structure

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*	Back alignment and structure

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*	Back alignment and structure

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*	Back alignment and structure

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*	Back alignment and structure

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}	Back alignment and structure

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*	Back alignment and structure

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}	Back alignment and structure

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1	Back alignment and structure

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*	Back alignment and structure

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*	Back alignment and structure

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A	Back alignment and structure

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}	Back alignment and structure

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}	Back alignment and structure

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*	Back alignment and structure

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}	Back alignment and structure

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}	Back alignment and structure

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A	Back alignment and structure

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*	Back alignment and structure

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}	Back alignment and structure

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}	Back alignment and structure

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}	Back alignment and structure

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A	Back alignment and structure

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*	Back alignment and structure

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A	Back alignment and structure

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}	Back alignment and structure

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A	Back alignment and structure

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}	Back alignment and structure

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*	Back alignment and structure

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}	Back alignment and structure

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...	Back alignment and structure

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A	Back alignment and structure

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A	Back alignment and structure

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*	Back alignment and structure

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}	Back alignment and structure

>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*	Back alignment and structure

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}	Back alignment and structure

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*	Back alignment and structure

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}	Back alignment and structure

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}	Back alignment and structure

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*	Back alignment and structure

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*	Back alignment and structure

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*	Back alignment and structure

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*	Back alignment and structure

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}	Back alignment and structure

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9	Back alignment and structure

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A	Back alignment and structure

>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		586
d1vyba_		236	d.151.1.1 (A:) Endonuclease domain of LINE-1 rever	0.002

>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of LINE-1 reverse transcriptase homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 295 GTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRW 338
           G+N  + + T N+  L+       L       +  +  IQET  
Sbjct: 1   GSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHL 44

PyMOL of d1vyba_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		586
d1i7na2		206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	98.85
d1iowa2		210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	98.53
d1e4ea2		211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	98.47
d1uc8a2		192	Lysine biosynthesis enzyme LysX ATP-binding domain	98.44
d1ehia2		228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	98.32
d1gsaa2		192	Prokaryotic glutathione synthetase, C-domain {Esch	98.17
d1ulza3		214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	98.08
d2r85a2		235	5-formaminoimidazole-4-carboxamide ribonucleotide	98.0
d2r7ka2		238	5-formaminoimidazole-4-carboxamide ribonucleotide	97.99
d1gsoa3		224	Glycinamide ribonucleotide synthetase (GAR-syn), d	97.86
d1w96a3		267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	97.72
d1vkza3		220	Glycinamide ribonucleotide synthetase (GAR-syn), d	97.7
d1a9xa6		259	Carbamoyl phosphate synthetase (CPS), large subuni	96.85
d2j9ga3		216	Biotin carboxylase (BC), domain 2 {Escherichia col	96.75
d1kjqa3		206	Glycinamide ribonucleotide transformylase PurT, do	96.74
d3etja3		198	N5-carboxyaminoimidazole ribonucleotide synthetase	95.73
d1a9xa5		275	Carbamoyl phosphate synthetase (CPS), large subuni	94.92
d2io8a3		297	Glutathionylspermidine synthase, synthetase domain	87.34

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.2e-09  Score=99.96  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344        107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC  162 (586)
Q Consensus       107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl  162 (586)
                      ...+|+||..|+.|+||.++++.+++.        ....++||+||+       .++|+|+.|+
T Consensus        50 ~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~~~~~~~~~~~vqe~I~-------~~~dirv~vi  106 (206)
T d1i7na2          50 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-------AKYDIRVQKI  106 (206)
T ss_dssp             CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-------EEEEEEEEEE
T ss_pred             CCceEEecCCCCCCCCeEEEeecchhhhHHHHHhhccCeEEEEEeec-------ccceEEEEEE
Confidence            467999999999999999999987763        246789999995       2479999887

PyMOL of d1i7na2

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}	Back information, alignment and structure

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}	Back information, alignment and structure

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}	Back information, alignment and structure

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure