Psyllid ID: psy11353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEITS
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEEEccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccHHHHHHHHHHHHcccccEEEEEEEccccEHHHEEEEccccHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mdpqldgsqqfCLRWHNYQTSLLatlpqlldgedltdvtlsaggrhmkAHKVVLSACSHYFKQLFKVSkssaeits
Flexible Loop (DISEMBL)
MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLfkvskssaeits
Low Complexity Region (SEG)
MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEITS
Disordered region (IsUnstruct)
*********QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV*********
Disordered Region (DISOPRED)
**********FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK*******
Disordered Region (DISEMBL)
********QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV*********
Disordered Region (DISPRO)
*****DGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEITS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
P42282	813	Protein tramtrack, alpha	no	N/A	0.776	0.072	0.610	6e-16
P17789	643	Protein tramtrack, beta i	no	N/A	0.763	0.090	0.620	8e-16
Q01295	727	Broad-complex core protei	no	N/A	0.815	0.085	0.548	3e-15
Q24206	880	Broad-complex core protei	no	N/A	0.815	0.070	0.548	6e-15
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.815	0.064	0.548	1e-14
P42284	549	Longitudinals lacking pro	no	N/A	0.815	0.112	0.548	1e-14
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.815	0.070	0.548	2e-14
P42283	891	Longitudinals lacking pro	no	N/A	0.815	0.069	0.548	2e-14
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.815	0.063	0.548	2e-14
Q9W0K7	977	Protein bric-a-brac 1 OS=	no	N/A	0.75	0.058	0.631	2e-14

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
           SQ+FCLRW+N+Q++LL+   QLL  E  TDVTL+  G+H+KAHK+VLSACS YF  LF
Sbjct: 4  ASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLF 62

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.
Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          SQ+FCLRW+N+Q++LL+   QLL  E  TDVTL+  G+H+KAHK+VLSACS YF  LF
Sbjct: 5  SQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLF 62

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D +Q FCLRW+NYQ+S+ +    L D E   DVTL+  GR +KAH+VVLSACS YF++L
Sbjct: 1  MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFREL 60

Query: 65 FK 66
           K
Sbjct: 61 LK 62

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D +Q FCLRW+NYQ+S+ +    L D E   DVTL+  GR +KAH+VVLSACS YF++L
Sbjct: 1  MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFREL 60

Query: 65 FK 66
           K
Sbjct: 61 LK 62

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query: 65 FK 66
           +
Sbjct: 61 LQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query: 65 FK 66
           +
Sbjct: 61 LQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query: 65 FK 66
           +
Sbjct: 61 LQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query: 65 FK 66
           +
Sbjct: 61 LQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query: 65 FK 66
           +
Sbjct: 61 LQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 41/57 (71%)

Query: 9   QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
           QQFCLRW+NYQT+L     QLL  E   DVTL+  GR MKAHK+VLSACS YF+ L 
Sbjct: 100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLL 156

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242003048	436	zinc finger protein and BTB domain-conta	0.763	0.133	0.793	5e-23
307186839	341	Protein bric-a-brac 2 [Camponotus florid	0.776	0.173	0.745	3e-21
383853056	342	PREDICTED: zinc finger protein 161 homol	0.763	0.169	0.758	5e-21
350417916	342	PREDICTED: zinc finger protein 161 homol	0.763	0.169	0.758	5e-21
340715672	342	PREDICTED: transcription factor GAGA-lik	0.763	0.169	0.758	5e-21
66538417	342	PREDICTED: transcription factor GAGA-lik	0.763	0.169	0.758	5e-21
332023260	342	Protein bric-a-brac 2 [Acromyrmex echina	0.763	0.169	0.741	6e-21
307210938	381	Protein bric-a-brac 2 [Harpegnathos salt	0.763	0.152	0.741	6e-21
193591953	324	PREDICTED: zinc finger protein 131-like	0.802	0.188	0.770	1e-20
195494110	650	GE20067 [Drosophila yakuba] gi|194180799	0.868	0.101	0.651	3e-18

>gi|242003048|ref|XP_002422590.1| zinc finger protein and BTB domain-containing protein, putative [Pediculus humanus corporis] gi|212505391|gb|EEB09852.1| zinc finger protein and BTB domain-containing protein, putative [Pediculus humanus corporis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 56/58 (96%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHNYQ+SLLA+LPQ LDG+DLTDVTLSAGGR+++AH+VVLSACS YF+++FK
Sbjct: 6  QQFCLRWHNYQSSLLASLPQFLDGDDLTDVTLSAGGRNLRAHRVVLSACSQYFREIFK 63

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186839|gb|EFN72256.1| Protein bric-a-brac 2 [Camponotus floridanus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 55/59 (93%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          SQQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AH+++LSACS+YFK+LFK
Sbjct: 3  SQQFCLRWHNFQNTLLSSLPKLLDGGHLTDVTLSAGGRHIHAHRIILSACSYYFKELFK 61

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853056|ref|XP_003702040.1| PREDICTED: zinc finger protein 161 homolog [Megachile rotundata]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AHK++LSACS+YFK+LFK
Sbjct: 4  QQFCLRWHNFQNTLLSSLPKLLDGGYLTDVTLSAGGRHIHAHKIILSACSYYFKELFK 61

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417916|ref|XP_003491643.1| PREDICTED: zinc finger protein 161 homolog [Bombus impatiens]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AHK++LSACS+YFK+LFK
Sbjct: 4  QQFCLRWHNFQNTLLSSLPKLLDGGYLTDVTLSAGGRHIHAHKIILSACSYYFKELFK 61

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715672|ref|XP_003396333.1| PREDICTED: transcription factor GAGA-like [Bombus terrestris]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AHK++LSACS+YFK+LFK
Sbjct: 4  QQFCLRWHNFQNTLLSSLPKLLDGGYLTDVTLSAGGRHIHAHKIILSACSYYFKELFK 61

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66538417|ref|XP_623422.1| PREDICTED: transcription factor GAGA-like isoform 2 [Apis mellifera]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AHK++LSACS+YFK+LFK
Sbjct: 4  QQFCLRWHNFQNTLLSSLPKLLDGGYLTDVTLSAGGRHIHAHKIILSACSYYFKELFK 61

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023260|gb|EGI63514.1| Protein bric-a-brac 2 [Acromyrmex echinatior]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AH+++LSACS+YFK+LFK
Sbjct: 4  QQFCLRWHNFQNTLLSSLPKLLDGGHLTDVTLSAGGRHIHAHRIILSACSYYFKELFK 61

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210938|gb|EFN87253.1| Protein bric-a-brac 2 [Harpegnathos saltator]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 54/58 (93%)

Query: 9  QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          QQFCLRWHN+Q +LL++LP+LLDG  LTDVTLSAGGRH+ AH+++LSACS+YFK+LFK
Sbjct: 16 QQFCLRWHNFQNTLLSSLPKLLDGGHLTDVTLSAGGRHIHAHRIILSACSYYFKELFK 73

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193591953|ref|XP_001946753.1| PREDICTED: zinc finger protein 131-like isoform 1 [Acyrthosiphon pisum] gi|328715555|ref|XP_003245660.1| PREDICTED: zinc finger protein 131-like isoform 2 [Acyrthosiphon pisum] gi|328715558|ref|XP_003245661.1| PREDICTED: zinc finger protein 131-like isoform 3 [Acyrthosiphon pisum]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query: 6  DGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          + SQQFCLRWHNYQ+SL++TLPQLL+ +DLTDVTL AG R +KAH+VVLSACS YFKQLF
Sbjct: 4  EESQQFCLRWHNYQSSLMSTLPQLLNHDDLTDVTLCAGLRTLKAHRVVLSACSDYFKQLF 63

Query: 66 K 66
          K
Sbjct: 64 K 64

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494110|ref|XP_002094698.1| GE20067 [Drosophila yakuba] gi|194180799|gb|EDW94410.1| GE20067 [Drosophila yakuba]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 6  DGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          D  QQFCLRWHN+QTSLL+TLP LLD   LTDVT+SA GR +KAH+VVLSACS +F  +F
Sbjct: 25 DSQQQFCLRWHNHQTSLLSTLPILLDQSHLTDVTISAEGRQLKAHRVVLSACSSFFMDIF 84

Query: 66 KVSKSS 71
          +  ++S
Sbjct: 85 RALEAS 90

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
FB|FBgn0052121	648	CG32121 [Drosophila melanogast	0.921	0.108	0.616	3.2e-18
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.763	0.071	0.620	1.6e-14
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.75	0.058	0.649	9.1e-14
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.815	0.070	0.548	1.7e-13
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.815	0.063	0.548	3.1e-13
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.815	0.058	0.571	7.3e-13
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.75	0.071	0.561	3.5e-12
FB|FBgn0264981	1089	mamo "maternal gene required f	0.776	0.054	0.566	6.9e-12
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.921	0.551	0.442	8.2e-12
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.75	0.059	0.543	5.3e-11

FB|FBgn0052121 CG32121 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 45/73 (61%), Positives = 56/73 (76%)

Query:     2 DPQL---DGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACS 58
             D QL   D  QQFCLRWHN+QTSLL+TLP LLD   LTDVT+SA GR ++AH+VVLSACS
Sbjct:    18 DQQLQHNDSQQQFCLRWHNHQTSLLSTLPILLDQSHLTDVTISAEGRQLRAHRVVLSACS 77

Query:    59 HYFKQLFKVSKSS 71
              +F  +F+  ++S
Sbjct:    78 SFFMDIFRALEAS 90

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query:     8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
             SQ+FCLRW+N+Q++LL+   QLL  E  TDVTL+  G+H+KAHK+VLSACS YF  LF
Sbjct:     5 SQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLF 62

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 9.1e-14, P = 9.1e-14
 Identities = 37/57 (64%), Positives = 42/57 (73%)

Query:     8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
             SQQFCLRW+NYQT+L     QLL  E   DVTL+  GR MKAHK+VLSACS YF+ L
Sbjct:    99 SQQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTL 155

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query:     5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
             +D +Q FCLRW+NYQ+S+ +    L D E   DVTL+  GR +KAH+VVLSACS YF++L
Sbjct:     1 MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFREL 60

Query:    65 FK 66
              K
Sbjct:    61 LK 62

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query:     5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
             +D  QQFCLRW+N+Q++L++    LL+ E L D TL+A G+ +KAHKVVLSACS YF  L
Sbjct:     1 MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATL 60

Query:    65 FK 66
              +
Sbjct:    61 LQ 62

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 36/63 (57%), Positives = 44/63 (69%)

Query:     3 PQLDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK 62
             P  +G QQFCLRW+NYQ++L     +LL  E   DVTLS  G  +KAHK+VLSACS YF+
Sbjct:   191 PSGEG-QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQ 249

Query:    63 QLF 65
              LF
Sbjct:   250 ALF 252

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query:     9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
             QQFCLRW+N+Q + ++    LL    L DVTL+A GR ++AHK+VLSACS YF+ LF
Sbjct:     4 QQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALF 60

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query:     7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLF 65
             GS+ +CLRW+NYQ++LL    QLL    L DVTL    G  ++AHKVVLSACS YF+ LF
Sbjct:     2 GSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLF 61

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:     5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
             +   QQF L+W+++QT+++ +   L D +  TDVTL+  G+  KAHK+VLSACS YFK L
Sbjct:     2 MSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKAL 61

Query:    65 FKVSKSSAEI 74
              + + S   I
Sbjct:    62 LEENPSKHPI 71

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query:     9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
             QQFCLRW+N+ T+L   L  LL  E L DVTL+  G  +KAH+ +LSACS YF+ +F
Sbjct:   104 QQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFETIF 160

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
pfam00651	101	pfam00651, BTB, BTB/POZ domain	5e-13
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-09
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	1e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-04

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 58.4 bits (142), Expect = 5e-13
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 28 QLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
          +L +  +L DVTL  G +   AHK VL+ACS YFK LF       EIT
Sbjct: 3  ELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFT-GNKEVEIT 49

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 49.6 bits (119), Expect = 1e-09
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 37 DVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          DVTL  GG+   AHK VL+A S YFK LF 
Sbjct: 1  DVTLVVGGKKFHAHKAVLAAHSPYFKALFS 30

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 22 LLATLPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLF 65
          +++ +  LLD + L DV ++ G G  +KAHK +L+A S YF+ LF
Sbjct: 12 VVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLF 56

Length = 557

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 38 VTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
          + +  GG  +K HK++LS+ S YFK++FK +    EI 
Sbjct: 14 IIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEIN 51

Length = 534

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PHA02713	557	hypothetical protein; Provisional	99.59
KOG4441|consensus	571		99.56
PHA02790	480	Kelch-like protein; Provisional	99.28
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.25
KOG4350|consensus	620		99.13
PHA03098	534	kelch-like protein; Provisional	99.13
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.66
KOG4591|consensus	280		98.58
KOG0783|consensus	1267		98.24
KOG2075|consensus	521		97.94
KOG0783|consensus	1267		97.41
KOG2838|consensus	401		97.12
KOG4682|consensus	488		96.24
KOG2838|consensus	401		95.56
KOG0511|consensus	516		90.43
KOG3863|consensus	604		84.13

>PHA02713 hypothetical protein; Provisional

Probab=99.59  E-value=9.2e-16  Score=111.66  Aligned_cols=57  Identities=33%  Similarity=0.556  Sum_probs=52.3

Q ss_pred             eccchHHHHHHHHHHhhcCCCCeeEEEEeC-CeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~-g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ....|...+++.|+++|+++.+|||+|.|+ |+.|+|||+|||++|+||++||+++..
T Consensus         4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~   61 (557)
T PHA02713          4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMI   61 (557)
T ss_pred             chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCch
Confidence            356789999999999999999999999998 899999999999999999999987543

>KOG4441|consensus

Probab=99.56  E-value=2.5e-15  Score=109.86  Aligned_cols=59  Identities=37%  Similarity=0.513  Sum_probs=54.8

Q ss_pred             EeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      .+....|...+++.|+.+|+.+.+|||+|.+++++|+|||+|||++|+|||+||+++..
T Consensus        13 ~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~   71 (571)
T KOG4441|consen   13 EFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLK   71 (571)
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcc
Confidence            45778899999999999999999999999999999999999999999999999997544

>PHA02790 Kelch-like protein; Provisional

Probab=99.28  E-value=2.5e-12  Score=92.22  Aligned_cols=45  Identities=16%  Similarity=0.322  Sum_probs=37.9

Q ss_pred             HHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         25 TLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        25 ~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      .+-.++..+.+|||++.+|+ +|+|||+|||++|+|||+||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~   56 (480)
T PHA02790         12 NILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYT   56 (480)
T ss_pred             hHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcc
Confidence            34457888999998877665 8999999999999999999987543

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.25  E-value=3.2e-12  Score=74.50  Aligned_cols=43  Identities=40%  Similarity=0.729  Sum_probs=37.6

Q ss_pred             HHHhhcCCCCeeEEEEeC-CeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         26 LPQLLDGEDLTDVTLSAG-GRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        26 l~~~~~~~~~~Dv~l~v~-g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      |+++++++.++|++|.++ |+.|+|||.||+++|+||+.||...
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~   44 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS   44 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccc
Confidence            567889999999999999 8999999999999999999999887

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG4350|consensus

Probab=99.13  E-value=2e-11  Score=87.14  Aligned_cols=50  Identities=30%  Similarity=0.511  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcC
Q psy11353         18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        18 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      .+.++.+.+..+.-..+++||+++|++++|||||+|||++|+|||+|+-+
T Consensus        27 i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYg   76 (620)
T KOG4350|consen   27 ISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYG   76 (620)
T ss_pred             hccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhh
Confidence            45667888889999999999999999999999999999999999999854

>PHA03098 kelch-like protein; Provisional

Probab=99.13  E-value=2.1e-11  Score=87.61  Aligned_cols=39  Identities=36%  Similarity=0.624  Sum_probs=36.3

Q ss_pred             CCCCeeEEEEe--CCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         32 GEDLTDVTLSA--GGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        32 ~~~~~Dv~l~v--~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ++.+|||+|.+  +|+.|+|||.||+++|+||++||++...
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~   46 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK   46 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC
Confidence            78999999998  9999999999999999999999987654

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.66  E-value=1.2e-08  Score=56.18  Aligned_cols=33  Identities=61%  Similarity=0.939  Sum_probs=30.8

Q ss_pred             eEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         37 DVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        37 Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      |+++.++|+.|++||.+|+++|+||++||.+..
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~   33 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDF   33 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCC
Confidence            789999999999999999999999999998754

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4591|consensus

Probab=98.58  E-value=3.4e-08  Score=65.36  Aligned_cols=51  Identities=35%  Similarity=0.598  Sum_probs=45.1

Q ss_pred             ccchHHHHHHHHHHhhcCCCCeeEEEEeCC---eEEEeEeEEecccCHHHHHhhcC
Q psy11353         15 WHNYQTSLLATLPQLLDGEDLTDVTLSAGG---RHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g---~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      ...+++.++.....++.+++|+|++++++|   +.++|||+|||+||++++  |.+
T Consensus        46 ~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN   99 (280)
T KOG4591|consen   46 PDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FAN   99 (280)
T ss_pred             chhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hcc
Confidence            345789999999999999999999999985   779999999999999997  544

>KOG0783|consensus

Probab=98.24  E-value=1.6e-06  Score=66.52  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=34.0

Q ss_pred             CCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         32 GEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        32 ~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      ...+.|||+.||++.|+|||+||+++|++||.+|-...
T Consensus       555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~  592 (1267)
T KOG0783|consen  555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKK  592 (1267)
T ss_pred             ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhc
Confidence            45789999999999999999999999999999985543

>KOG2075|consensus

Probab=97.94  E-value=7.3e-06  Score=59.54  Aligned_cols=55  Identities=27%  Similarity=0.482  Sum_probs=46.9

Q ss_pred             eccchHHHHHHHHHHhhcCCCCeeEEEEeCC-----eEEEeEeEEecccCHHHHHhhcCC
Q psy11353         14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGG-----RHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g-----~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      .|..--..+..+.-.++++...+|+.++|++     ..|||||.|||..|.+|.+||.+.
T Consensus        93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~  152 (521)
T KOG2075|consen   93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGG  152 (521)
T ss_pred             ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccC
Confidence            4555556777788888999999999999974     579999999999999999999764

>KOG0783|consensus

Probab=97.41  E-value=8.1e-05  Score=57.60  Aligned_cols=31  Identities=42%  Similarity=0.636  Sum_probs=26.0

Q ss_pred             CeeEEEEeCCeEEEeEeEEecccCHHHHHhhc
Q psy11353         35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK   66 (76)
Q Consensus        35 ~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~   66 (76)
                      .|||+++ +|+.|+||+++|++|.+||..||.
T Consensus       712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~  742 (1267)
T KOG0783|consen  712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQ  742 (1267)
T ss_pred             eEEEEec-CCcCcccceeEeeeHHHHHHHHHH
Confidence            3444444 889999999999999999999995

>KOG2838|consensus

Probab=97.12  E-value=0.00012  Score=50.75  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         19 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ...+++.+...+......|+-|......|+|||++|++++++|+.+.++.++
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e  165 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEE  165 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCC
Confidence            4667777777777778889999999999999999999999999988877554

>KOG4682|consensus

Probab=96.24  E-value=0.0059  Score=44.21  Aligned_cols=41  Identities=34%  Similarity=0.425  Sum_probs=36.1

Q ss_pred             HHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         27 PQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        27 ~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      ..++.++.=+||.|.+-|++|..||.-|.. |+||.+||++.
T Consensus        61 q~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gt  101 (488)
T KOG4682|consen   61 QNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGT  101 (488)
T ss_pred             HHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccc
Confidence            456678999999999999999999999976 58999999764

>KOG2838|consensus

Probab=95.56  E-value=0.0025  Score=44.34  Aligned_cols=47  Identities=28%  Similarity=0.434  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhcCCCCeeEEEE--eCC--------------eEEEeEeEEecccCHHHHHhhc
Q psy11353         20 TSLLATLPQLLDGEDLTDVTLS--AGG--------------RHMKAHKVVLSACSHYFKQLFK   66 (76)
Q Consensus        20 ~~~~~~l~~~~~~~~~~Dv~l~--v~g--------------~~~~aHr~vLa~~S~~F~~~f~   66 (76)
                      ..+-..++.++++..+.|+.|.  ++|              .+++||++|.+++|++||.++.
T Consensus       220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~  282 (401)
T KOG2838|consen  220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLL  282 (401)
T ss_pred             hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHH
Confidence            4444556677776665565553  333              3699999999999999999873

>KOG0511|consensus

Probab=90.43  E-value=0.015  Score=42.03  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             CCeeEEEEe-CCeEEEeEeEEecccCHHHHH-hhcCCCCCcccC
Q psy11353         34 DLTDVTLSA-GGRHMKAHKVVLSACSHYFKQ-LFKVSKSSAEIT   75 (76)
Q Consensus        34 ~~~Dv~l~v-~g~~~~aHr~vLa~~S~~F~~-~f~~~~~~~~i~   75 (76)
                      ...|+++.+ .|+.|-||++.|+++|.+|.. +-+-.+..++|.
T Consensus       148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~  191 (516)
T KOG0511|consen  148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIE  191 (516)
T ss_pred             cccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchh
Confidence            456777755 678888999999999886633 333455566663

>KOG3863|consensus

Probab=84.13  E-value=0.13  Score=38.90  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             HHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHh
Q psy11353         25 TLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL   64 (76)
Q Consensus        25 ~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~   64 (76)
                      .++..|+...+||+++.+.+..|.+|+     ++.||..-
T Consensus         4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~   38 (604)
T KOG3863|consen    4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSR   38 (604)
T ss_pred             cccccccccccchhHHHHhccccccee-----ccchhhhh
Confidence            467788899999999999999999999     78888543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
3m52_A	117	Crystal Structure Of The Btb Domain From The Miz-1Z		6e-05
2q81_A	119	Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length		6e-05
3e4u_A	130	Crystal Structure Of The Wild-Type Human Bcl6 BtbPO		2e-04
3m8v_A	124	Crystal Structure Of The Btb Domain From KaisoZBTB3		6e-04
3fkc_A	116	Crystal Structure Of Human Zinc Finger And Btb Doma		6e-04
2if5_A	120	Structure Of The Poz Domain Of Human Lrf, A Master		8e-04
2nn2_A	133	Crystal Structure Of The Btb Domain From The LrfZBT		9e-04

>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L D T    G H KAHK VL+ACS YFK LF
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55

>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L D T    G H KAHK VL+ACS YFK LF
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57

>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          GS   C+++  + + +L  L +L   + LTDV +       +AHK VL ACS  F  +F
Sbjct: 4  GSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 62

>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
          Y  SLL +L +        DVT+    R  +AHK +LSA S YF QLF V+    E++
Sbjct: 16 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELS 73

>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAEIT 75
          Y  SLL +L +        DVT+    R  +AHK +LSA S YF QLF V+    E++
Sbjct: 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELS 71

>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L DV +   GR    H+ VL+ACS YFK+LF
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLF 55

>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 35 LTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L DV +   GR    H+ VL+ACS YFK+LF
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLF 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	2e-16
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	5e-16
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-15
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	3e-15
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	6e-15
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	7e-15
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	8e-15
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	8e-15
2vpk_A	116	Myoneurin; transcription regulation, transcription	9e-15
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	1e-14
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	3e-14
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	4e-14
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	5e-14
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	3e-13
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	1e-12
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-12
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	5e-12
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	1e-11
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	3e-10
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-10

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 67.2 bits (165), Expect = 2e-16
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          GS    +++  + + +L  L +L   + LTDV +       +AHK VL ACS  F  +F
Sbjct: 1  GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 59

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 66.1 bits (162), Expect = 5e-16
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          GS  +      + T++L  L      + L DVTL    +  +AH+ VL+ACS YF Q  
Sbjct: 4  GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL 62

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 64.5 bits (158), Expect = 1e-15
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
           + + ++ + +L+ L +      L DV +   GR    H+ VL+ACS YFK+LF
Sbjct: 2  GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLF 55

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 63.8 bits (156), Expect = 3e-15
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 5  LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQL 64
          ++  +        Y  SLL +L +        DVT+    R  +AHK +LSA S YF QL
Sbjct: 1  MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60

Query: 65 FKVSKSSAEI 74
          F V+    E+
Sbjct: 61 FSVAGQVVEL 70

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 63.1 bits (154), Expect = 6e-15
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
          +Q   +   N+  S+L  L +        DV++   G   KAH+ VL+A S YF+ LF  
Sbjct: 6  AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65

Query: 68 SKSS 71
          S+S+
Sbjct: 66 SRSA 69

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 62.6 bits (153), Expect = 7e-15
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          G        H     +L  L Q      L D T    G H KAHK VL+ACS YFK LF 
Sbjct: 1  GPLGSDFPQH--SQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV 58

Query: 67 VSKSSAEI 74
            K    +
Sbjct: 59 DQKDVVHL 66

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 62.6 bits (153), Expect = 8e-15
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 7  GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          G  Q     H   T LL    Q+     L DV +    +   AH+ VL+  S  F+ LF 
Sbjct: 2  GMIQLQNPSH--PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH 59

Query: 67 VSKSSAEI 74
           +     +
Sbjct: 60 RNSQHYTL 67

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 63.1 bits (154), Expect = 8e-15
 Identities = 12/66 (18%), Positives = 21/66 (31%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
           Q   +    +   LL  L    +     D  L   G  +   K +L+A S Y +     
Sbjct: 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY 79

Query: 68 SKSSAE 73
          +    +
Sbjct: 80 NPPKDD 85

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 62.6 bits (153), Expect = 9e-15
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSAE 73
          ++   LL  L +  +   L D T+  G    KAH+ VL++ S YF  +++ +  +  
Sbjct: 4  HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNV 60

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 62.3 bits (152), Expect = 1e-14
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          S  F      + T++L +L      + L DVT+   G+  +AH+ VL+ACS YF    
Sbjct: 9  SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRI 66

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 61.1 bits (149), Expect = 3e-14
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSS 71
           +   +L  L +  +     D TL  GG   KAH  VL+ CSH+F+ L+      
Sbjct: 6  QHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGG 60

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 61.1 bits (149), Expect = 4e-14
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
              + T++L +L      + L DVT+   G+  +AH+ VL+ACS YF    
Sbjct: 8  ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRI 59

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 60.7 bits (148), Expect = 5e-14
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 17 NYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSS 71
           +   +L  L +  +     D TL  GG   KAH  VL+ CSH+F++++      
Sbjct: 7  GHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGG 61

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 16 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
            +   LL  L    +     D  L   G  +   K +L+A S Y +   
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 56.9 bits (138), Expect = 1e-12
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKV 67
          Y +  L  L   L    L D  ++ G +   AH +VL+  S    +  + 
Sbjct: 14 YGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW 62

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 57.2 bits (139), Expect = 2e-12
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L   L  L +    TD  L   G+  +AHK +L+A S  F  +F
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 55

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 57.7 bits (140), Expect = 5e-12
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTL---SAGGRHMKAHKVVLSACSHYFKQL 64
          ++ F    H   + L     +        D+TL    AGGR  +AH+ VL+A + YF  L
Sbjct: 7  AEDFECSSH--CSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPL 64

Query: 65 F 65
           
Sbjct: 65 L 65

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 55.7 bits (135), Expect = 1e-11
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 22 LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
          L   L  L +    TD  L   G+  +AHK +L+A S  F  +F
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 64

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 50.6 bits (122), Expect = 3e-10
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 29 LLDGEDLTDVTLSAG----GRHMKAHKVVLSACSHYFKQLF--KVSKSSAEIT 75
          + + E + DV    G     R + AHK VL+  S  F  +F   +++  +EI 
Sbjct: 2  MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIH 54

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 22  LLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLF 65
           L   L  L +    TD  L   G+  +AHK +L+A S  F  +F
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.77
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.76
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.75
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.74
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.74
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.73
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.73
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.73
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.73
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.72
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.7
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.7
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.69
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.63
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.59
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.52
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.49
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.46
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.45
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.35
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	97.63
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	97.16
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	95.38
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	94.21
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	93.07
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	92.98

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.77  E-value=3.8e-19  Score=106.01  Aligned_cols=66  Identities=30%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             CCCccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353          5 LDGSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      +.....+.+.++.|...+++.|+++++++.+|||+|.|+|+.|+|||.|||++|+||++||.+...
T Consensus         2 p~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~   67 (125)
T 3ohu_A            2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK   67 (125)
T ss_dssp             CBSCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCC
T ss_pred             CCCCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCC
Confidence            345566777999999999999999999999999999999999999999999999999999987543

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.76  E-value=3.5e-19  Score=108.06  Aligned_cols=64  Identities=30%  Similarity=0.416  Sum_probs=59.0

Q ss_pred             CccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353          7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      +...+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||+|||++|+||++||.+...
T Consensus         8 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~   71 (138)
T 2z8h_A            8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD   71 (138)
T ss_dssp             TTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCC
T ss_pred             CCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCC
Confidence            4466778999999999999999999999999999999999999999999999999999987643

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.75  E-value=6.4e-19  Score=105.23  Aligned_cols=61  Identities=30%  Similarity=0.427  Sum_probs=56.8

Q ss_pred             cceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353          9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      ..+.++++.|+..+++.|+++++++.+|||+|.++|+.|+|||.|||++|+||++||.+..
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~   63 (124)
T 2ihc_A            3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA   63 (124)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-
T ss_pred             ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC
Confidence            4567889999999999999999999999999999999999999999999999999998764

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.74  E-value=4.9e-19  Score=105.09  Aligned_cols=57  Identities=30%  Similarity=0.515  Sum_probs=53.9

Q ss_pred             eeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      .+|+.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++.
T Consensus         2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~   58 (119)
T 3b84_A            2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS   58 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT
T ss_pred             cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC
Confidence            468899999999999999999999999999999999999999999999999998754

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.74  E-value=7.9e-19  Score=104.08  Aligned_cols=63  Identities=35%  Similarity=0.440  Sum_probs=57.6

Q ss_pred             ccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353          8 SQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ++...+.+++|...+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||.++..
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~~   66 (116)
T 3fkc_A            4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ   66 (116)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSCCS
T ss_pred             CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCCCC
Confidence            345566899999999999999999999999999999999999999999999999999987643

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.73  E-value=2.1e-18  Score=103.01  Aligned_cols=61  Identities=28%  Similarity=0.425  Sum_probs=55.8

Q ss_pred             ceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         10 QFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ...+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+...
T Consensus         4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~   64 (127)
T 1r29_A            4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK   64 (127)
T ss_dssp             -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred             CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc
Confidence            3456889999999999999999999999999999999999999999999999999987543

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.73  E-value=1.6e-18  Score=103.93  Aligned_cols=62  Identities=32%  Similarity=0.467  Sum_probs=57.2

Q ss_pred             CccceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353          7 GSQQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      ....+.++++.|...+++.|+++++++.+|||+|.|+|+.|+|||.||+++|+||++||.+.
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~   66 (129)
T 3ga1_A            5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS   66 (129)
T ss_dssp             --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC
T ss_pred             CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC
Confidence            34677889999999999999999999999999999999999999999999999999999764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.73  E-value=1e-18  Score=103.81  Aligned_cols=60  Identities=27%  Similarity=0.353  Sum_probs=55.6

Q ss_pred             eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      +.+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++..
T Consensus         4 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~   63 (121)
T 1buo_A            4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ   63 (121)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCS
T ss_pred             eeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCc
Confidence            346788999999999999999999999999999999999999999999999999987643

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.73  E-value=2.1e-18  Score=101.98  Aligned_cols=56  Identities=32%  Similarity=0.578  Sum_probs=53.1

Q ss_pred             eeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      .+|+.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++
T Consensus         3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~   58 (120)
T 2if5_A            3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSG   58 (120)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-
T ss_pred             cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCC
Confidence            57889999999999999999999999999999999999999999999999999865

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.72  E-value=1.4e-18  Score=103.14  Aligned_cols=59  Identities=39%  Similarity=0.495  Sum_probs=54.0

Q ss_pred             EeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      ..+++.|...+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.+...
T Consensus         4 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~   62 (119)
T 2q81_A            4 GSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD   62 (119)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCS
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCC
Confidence            34678899999999999999999999999999999999999999999999999987543

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.70  E-value=4.9e-18  Score=103.99  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=54.3

Q ss_pred             cceEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353          9 QQFCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      +.+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||+|||++|+||++||.++
T Consensus        21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~   80 (144)
T 2ppi_A           21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYN   80 (144)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred             eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCC
Confidence            456678999999999999999999999999999999999999999999999999999754

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.70  E-value=5.9e-18  Score=102.48  Aligned_cols=56  Identities=29%  Similarity=0.471  Sum_probs=49.3

Q ss_pred             eccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         14 RWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      .++.|...+++.|+++|+++.+|||+|.|+|+.|+|||.||+++|+||++||.+..
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~   59 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT   59 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC
Confidence            56789999999999999999999999999999999999999999999999998653

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.69  E-value=6.6e-18  Score=99.46  Aligned_cols=53  Identities=28%  Similarity=0.427  Sum_probs=50.7

Q ss_pred             cchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         16 HNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        16 ~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      +.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.
T Consensus         3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~   55 (116)
T 2vpk_A            3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST   55 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC
Confidence            56899999999999999999999999999999999999999999999999875

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.63  E-value=1e-16  Score=104.93  Aligned_cols=59  Identities=19%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      ..+.++.|+..+++.++.++.++.+|||+|.|+|+.|+|||+||+++|+||++||.++.
T Consensus         7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~   65 (256)
T 3hve_A            7 SAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP   65 (256)
T ss_dssp             ---CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC----
T ss_pred             CccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCC
Confidence            44578889999999999999999999999999999999999999999999999997643

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.59  E-value=1.9e-16  Score=104.86  Aligned_cols=58  Identities=26%  Similarity=0.328  Sum_probs=53.1

Q ss_pred             eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeC---CeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAG---GRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~---g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      ..+.++.|+..+++.|+.+|+++.+|||+|.|+   |+.|+|||+|||++|+||++||.++
T Consensus         8 ~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~   68 (279)
T 3i3n_A            8 EDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQ   68 (279)
T ss_dssp             EEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-
T ss_pred             cCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCC
Confidence            456888999999999999999999999999998   9999999999999999999999865

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.52  E-value=1.7e-15  Score=93.54  Aligned_cols=52  Identities=29%  Similarity=0.436  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         18 YQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        18 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      .+..+...++.+++++.+|||+|.++|+.|+|||.||+++|+||++||.+..
T Consensus        17 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~   68 (172)
T 3htm_A           17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM   68 (172)
T ss_dssp             CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCc
Confidence            3467889999999999999999999999999999999999999999998653

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.49  E-value=7.8e-15  Score=88.41  Aligned_cols=50  Identities=30%  Similarity=0.483  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         19 QTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        19 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      +..+.+.++.+++++.+|||+|.++|+.|+|||.||+++|+||++||.+.
T Consensus         9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~   58 (145)
T 4eoz_A            9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE   58 (145)
T ss_dssp             CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCC
Confidence            35688899999999999999999999999999999999999999999865

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=84.48  Aligned_cols=41  Identities=32%  Similarity=0.450  Sum_probs=36.3

Q ss_pred             hhcCCCCeeEEEEeCC----eEEEeEeEEecccCHHHHHhhcCCC
Q psy11353         29 LLDGEDLTDVTLSAGG----RHMKAHKVVLSACSHYFKQLFKVSK   69 (76)
Q Consensus        29 ~~~~~~~~Dv~l~v~g----~~~~aHr~vLa~~S~~F~~~f~~~~   69 (76)
                      +++++.+|||+|.++|    +.|+|||.||+++|+||++||.+..
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~   46 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDL   46 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCc
Confidence            6788999999999998    8999999999999999999998653

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.45  E-value=1.7e-14  Score=85.91  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=43.2

Q ss_pred             EeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHH
Q psy11353         12 CLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQ   63 (76)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~   63 (76)
                      ....+.+...+++.++  |.++.+|||+|.|+|+.|+|||+|||++|+||++
T Consensus         9 ~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~   58 (119)
T 3m5b_A            9 RLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR   58 (119)
T ss_dssp             EECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred             CCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence            3445556788888886  6779999999999999999999999999999985

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.35  E-value=3.7e-13  Score=90.03  Aligned_cols=49  Identities=31%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         20 TSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        20 ~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      ..+.+.+..++.++.++||+|.|+|+.|+|||.|||++|+||++||.+.
T Consensus       159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~  207 (312)
T 3hqi_A          159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE  207 (312)
T ss_dssp             CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-
T ss_pred             chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccC
Confidence            4688889999999999999999999999999999999999999999764

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=97.63  E-value=2.4e-05  Score=44.60  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.6

Q ss_pred             EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353         38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      |+|+. +|++|.+||.| |.+|+||++||.+
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~   33 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   33 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence            56654 78999999999 9999999999986

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=95.38  E-value=0.0096  Score=35.78  Aligned_cols=29  Identities=14%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353         38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      |+|+. +|+.|.+|+.+ |..|.+++.||..
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~   33 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED   33 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence            67766 88999999998 8999999999975

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=94.21  E-value=0.002  Score=39.59  Aligned_cols=30  Identities=13%  Similarity=0.281  Sum_probs=12.3

Q ss_pred             EEEEe-CCeEEEeEeEEecccCHHHHHhhcCC
Q psy11353         38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKVS   68 (76)
Q Consensus        38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~~   68 (76)
                      |+|+. +|..|.+|+.+ |..|++|+.||...
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~   36 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD   36 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc
Confidence            66664 79999999998 89999999999764

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=93.07  E-value=0.065  Score=30.34  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=25.7

Q ss_pred             EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353         38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      |+|+. +|..|.+++.+ |..|.+++.||..
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~   35 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG   35 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhc
Confidence            67766 89999999997 8999999999976

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=92.98  E-value=0.05  Score=30.64  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             EEEEe-CCeEEEeEeEEecccCHHHHHhhcC
Q psy11353         38 VTLSA-GGRHMKAHKVVLSACSHYFKQLFKV   67 (76)
Q Consensus        38 v~l~v-~g~~~~aHr~vLa~~S~~F~~~f~~   67 (76)
                      |+|+. +|..|.+++.+ |..|.+++.||..
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~   32 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   32 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence            56765 88999999997 8999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	1e-11
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	8e-10

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFK 66
          +++  + + +L  L +L   + LTDV +       +AHK VL ACS  F  +F 
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 56

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 8e-10
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFK 62
          L+  ++ T LL    Q+     L DV +    +   AH+ VL+  S  F+
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.77
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.76

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-20  Score=109.15  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=56.9

Q ss_pred             eEeeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCCCc
Q psy11353         11 FCLRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKSSA   72 (76)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~~~   72 (76)
                      +.++++.|+..+++.|+++|.++.|||++|.|+|++|+|||+|||++|+||++||.+++...
T Consensus         4 ~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~~~i   65 (121)
T d1buoa_           4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHY   65 (121)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEE
T ss_pred             EEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcccee
Confidence            34578899999999999999999999999999999999999999999999999998766543

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.3e-19  Score=105.90  Aligned_cols=58  Identities=29%  Similarity=0.471  Sum_probs=54.5

Q ss_pred             eeccchHHHHHHHHHHhhcCCCCeeEEEEeCCeEEEeEeEEecccCHHHHHhhcCCCC
Q psy11353         13 LRWHNYQTSLLATLPQLLDGEDLTDVTLSAGGRHMKAHKVVLSACSHYFKQLFKVSKS   70 (76)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~aHr~vLa~~S~~F~~~f~~~~~   70 (76)
                      +++++|+.++++.|+.+|+++.+||++|.++|+.|+|||+||+++|+||++||.+...
T Consensus         3 ~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~   60 (122)
T d1r29a_           3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK   60 (122)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred             cccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchh
Confidence            4789999999999999999999999999999999999999999999999999976544