Psyllid ID: psy1135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Secondary Structure (PSIPRED)
ccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHcccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
MDGSKYYESLAEGmksqnftidftkphikptllNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCyflpmlqlipfriyc
Flexible Loop (DISEMBL)
MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Low Complexity Region (SEG)
MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Disordered region (IsUnstruct)
*****************NFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIY*
Disordered Region (DISOPRED)
*******ESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Disordered Region (DISEMBL)
********SLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Disordered Region (DISPRO)
MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q9DDN6	385	Neuropeptide Y receptor t	no	N/A	0.790	0.254	0.34	6e-07
O02836	382	Neuropeptide Y receptor t	yes	N/A	0.798	0.259	0.306	1e-06
Q9VNM1	485	Neuropeptide F receptor O	no	N/A	0.669	0.171	0.329	1e-06
P97295	381	Neuropeptide Y receptor t	yes	N/A	0.725	0.236	0.354	2e-06
Q9GK74	381	Neuropeptide Y receptor t	yes	N/A	0.725	0.236	0.354	2e-06
P79113	384	Neuropeptide Y receptor t	yes	N/A	0.814	0.263	0.327	2e-06
Q5IS62	381	Neuropeptide Y receptor t	yes	N/A	0.774	0.251	0.333	3e-06
P49146	381	Neuropeptide Y receptor t	yes	N/A	0.774	0.251	0.333	3e-06
Q9Z2D5	381	Neuropeptide Y receptor t	yes	N/A	0.774	0.251	0.333	3e-06
Q17239	446	5-hydroxytryptamine recep	N/A	N/A	0.532	0.147	0.363	8e-06

>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 25  KPHIKP--TLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALAD 82
           KP +K   TL+ V +  I  Y   IL GV  N   I+ II  +  R  T  +  N+A+AD
Sbjct: 41  KPELKDSTTLVEVQIILIFAYCSIILLGVIGNSLVIHVIIKFKSMRTVTNFFIANLAVAD 100

Query: 83  IIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
           ++     LP TL+ TL+  W  G  LC+ +P  Q +   +
Sbjct: 101 LLVNTLCLPFTLVYTLLGEWKLGPVLCHLVPYAQALAVHV 140

Receptor for neuropeptide Y and peptide YY.
Gallus gallus (taxid: 9031)

>sp|O02836|NPY2R_PIG Neuropeptide Y receptor type 2 OS=Sus scrofa GN=NPY2R PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 24  TKPHIKPT--LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALA 81
           ++P +K +  L+ V +  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+A
Sbjct: 37  SEPELKDSTKLIEVQIILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVA 96

Query: 82  DIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
           D++     LP TL  TL+  W  G  LC+ +P  Q +  ++
Sbjct: 97  DLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQGLAVQV 137

Receptor for neuropeptide Y and peptide YY.

Sus scrofa (taxid: 9823)

>sp|Q9VNM1|NPFR1_DROME Neuropeptide F receptor OS=Drosophila melanogaster GN=NPFR1 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 36  YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95
           Y   I +YGV I+ G   N   +  +I + + R A   + +N+A++D++ C+  +P+TLM
Sbjct: 86  YHMLISMYGVLIVFGALGNTLVVIAVIRKPIMRTARNLFILNLAISDLLLCLVTMPLTLM 145

Query: 96  VTLVQNWTWG--SFLCYFLPMLQLI 118
             L + W +G  S LC  + MLQ +
Sbjct: 146 EILSKYWPYGSCSILCKTIAMLQAL 170

Receptor for NPF. Integral part of the sensory system that mediates food signaling, providing the neural basis for the regulation of food response; coordinates larval foraging and social behavior changes during development. Required in dopaminergic (DA) neurons that innervate the mushroom body for satiety to suppress appetitive memory performance; a key factor in the internal state of hunger in the brain. NPF neurons coordinately modulate diverse sensory and motor neurons important for feeding, flight, and locomotion. NPF/NPFR1 pathway exerts its suppressive effect on larval aversion to diverse stressful stimuli (chemical stress and noxious heat) through attenuation of TRP channel-induced neuronal excitation. NPF neural signaling system plays a physiological role in acute modulation of alcohol sensitivity in adults, rather than a general response to intoxication by sedative agents. Activation and inhibition of the NPF system reduces and enhances ethanol preference, respectively. Sexual experience, the NPF system activity and ethanol consumption are all linked; sexual deprivation is a major contributor to enhanced ethanol preference.

Drosophila melanogaster (taxid: 7227)

>sp|P97295|NPY2R_MOUSE Neuropeptide Y receptor type 2 OS=Mus musculus GN=Npy2r PE=2 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 21  IDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIAL 80
           ID TK      L+ V V  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+
Sbjct: 41  IDSTK------LVEVQVILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAV 94

Query: 81  ADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
           AD++     LP TL  TL+  W  G  LC+ +P  Q
Sbjct: 95  ADLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQ 130

Receptor for neuropeptide Y and peptide YY.

Mus musculus (taxid: 10090)

>sp|Q9GK74|NPY2R_MACMU Neuropeptide Y receptor type 2 OS=Macaca mulatta GN=NPY2R PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 21  IDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIAL 80
           ID TK      L+ V V  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+
Sbjct: 41  IDSTK------LIEVQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAV 94

Query: 81  ADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
           AD++     LP TL  TL+  W  G  LC+ +P  Q
Sbjct: 95  ADLVVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQ 130

Receptor for neuropeptide Y and peptide YY.

Macaca mulatta (taxid: 9544)

>sp|P79113|NPY2R_BOVIN Neuropeptide Y receptor type 2 OS=Bos taurus GN=NPY2R PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 16  SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
           S+   ID TK      L+ V V  I+ Y   IL GV  N   I+ +I  +  R  T  + 
Sbjct: 39  SEPELIDSTK------LIEVQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFI 92

Query: 76  INIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
            N+A+AD++     LP TL  TL+  W  G  LC+ +P  Q +  ++
Sbjct: 93  ANLAVADLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQGLAVQV 139

Receptor for neuropeptide Y and peptide YY.

Bos taurus (taxid: 9913)

>sp|Q5IS62|NPY2R_PANTR Neuropeptide Y receptor type 2 OS=Pan troglodytes GN=NPY2R PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 21  IDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIAL 80
           ID TK      L+ V V  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+
Sbjct: 41  IDSTK------LIEVQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAV 94

Query: 81  ADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
           AD++     LP TL  TL+  W  G  LC+ +P  Q +  ++
Sbjct: 95  ADLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQGLAVQV 136

Receptor for neuropeptide Y and peptide YY.

Pan troglodytes (taxid: 9598)

>sp|P49146|NPY2R_HUMAN Neuropeptide Y receptor type 2 OS=Homo sapiens GN=NPY2R PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 21  IDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIAL 80
           ID TK      L+ V V  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+
Sbjct: 41  IDSTK------LIEVQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAV 94

Query: 81  ADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
           AD++     LP TL  TL+  W  G  LC+ +P  Q +  ++
Sbjct: 95  ADLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQGLAVQV 136

Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is PYY > NPY > PYY (3-36) > NPY (2-36) > [Ile-31, Gln-34] PP > [Leu-31, Pro-34] NPY > PP, [Pro-34] PYY and NPY free acid.

Homo sapiens (taxid: 9606)

>sp|Q9Z2D5|NPY2R_CAVPO Neuropeptide Y receptor type 2 OS=Cavia porcellus GN=NPY2R PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 21  IDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIAL 80
           ID TK      L  V V  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+
Sbjct: 42  IDSTK------LTEVRVVLILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAV 95

Query: 81  ADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
           AD++     LP TL  TL+  W  G  LC+ +P  Q +  ++
Sbjct: 96  ADLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQGLAVQV 137

Receptor for neuropeptide Y and peptide YY.

Cavia porcellus (taxid: 10141)

>sp|Q17239|5HTR_BOMMO 5-hydroxytryptamine receptor OS=Bombyx mori PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 44  GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWT 103
           G+ IL+ V  N+F I  I++ER  R A     +++A+AD++    V+P+  +  +VQ WT
Sbjct: 69  GLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLVMPLGAVYEVVQRWT 128

Query: 104 WGSFLC 109
            G  LC
Sbjct: 129 LGPELC 134

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.

Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
347963708	813	AGAP000383-PA [Anopheles gambiae str. PE	0.887	0.135	0.418	8e-24
195447402	1131	GK25261 [Drosophila willistoni] gi|19416	0.951	0.104	0.434	1e-22
221517146	1008	CG32547, isoform C [Drosophila melanogas	0.951	0.117	0.409	5e-22
56385014	949	G protein coupled receptor [Drosophila m	0.951	0.124	0.409	5e-22
195400919	974	GJ15198 [Drosophila virilis] gi|19414171	0.806	0.102	0.47	2e-21
189234095	445	PREDICTED: similar to AGAP000383-PA [Tri	0.822	0.229	0.460	2e-21
195567529	519	GD15634 [Drosophila simulans] gi|1942047	0.951	0.227	0.409	3e-21
195481344	638	GE15527 [Drosophila yakuba] gi|194189136	0.903	0.175	0.413	1e-20
194766706	889	GF22505 [Drosophila ananassae] gi|190619	0.903	0.125	0.431	1e-20
195130817	945	GI15592 [Drosophila mojavensis] gi|19390	0.951	0.124	0.418	1e-20

>gi|347963708|ref|XP_001688310.2| AGAP000383-PA [Anopheles gambiae str. PEST] gi|333467071|gb|EDO64334.2| AGAP000383-PA [Anopheles gambiae str. PEST]

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 73/110 (66%)

Query: 13  GMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATC 72
           G K+ +   D++ P++KP +  +Y  FI+LY +    G+ LN+  I +I   +L+RD T 
Sbjct: 26  GEKNYSVNGDYSAPYLKPVVARIYPLFILLYAIPTALGLTLNVMIIVYISKYKLYRDVTH 85

Query: 73  GYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
            + +N+A+   ++C FVLPITLMV ++QNW +G FLC+FLP+LQ IP  +
Sbjct: 86  AFLVNLAVCHCVQCAFVLPITLMVMIIQNWVFGQFLCFFLPLLQDIPLHV 135

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447402|ref|XP_002071198.1| GK25261 [Drosophila willistoni] gi|194167283|gb|EDW82184.1| GK25261 [Drosophila willistoni]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 77/122 (63%), Gaps = 4/122 (3%)

Query: 5   KYYESLAEGMKSQ-NFTID---FTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY+ ++A  ++   N T D   F  P +K ++ +VY  F+I Y    L GV LNI  I +
Sbjct: 235 KYFMAIAHFLEGHVNNTDDMERFNGPILKSSIKSVYWLFLIQYAALALLGVILNIVIIVY 294

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct: 295 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQDIPL 354

Query: 121 RI 122
            +
Sbjct: 355 HV 356

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221517146|ref|NP_728174.2| CG32547, isoform C [Drosophila melanogaster] gi|442616842|ref|NP_001259682.1| CG32547, isoform D [Drosophila melanogaster] gi|220901822|gb|AAX52506.2| CG32547, isoform C [Drosophila melanogaster] gi|440216914|gb|AGB95524.1| CG32547, isoform D [Drosophila melanogaster]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 4/122 (3%)

Query: 5   KYYESLAEGMK-SQNFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY  +L+  +    N T+D  +   P +K ++ +VY  F+I Y    L GV LN+  + +
Sbjct: 66  KYVTALSHFLDWHSNGTVDMERLSGPILKSSIKSVYWLFLIQYAALALLGVVLNVIIVVY 125

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct: 126 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQDIPL 185

Query: 121 RI 122
            +
Sbjct: 186 HV 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56385014|gb|AAP69822.1| G protein coupled receptor [Drosophila melanogaster]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 4/122 (3%)

Query: 5   KYYESLAEGMK-SQNFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY  +L+  +    N T+D  +   P +K ++ +VY  F+I Y    L GV LN+  + +
Sbjct: 7   KYVTALSHFLDWHSNGTVDMERLSGPILKSSIKSVYWLFLIQYAALALLGVVLNVIIVVY 66

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct: 67  IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQDIPL 126

Query: 121 RI 122
            +
Sbjct: 127 HV 128

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400919|ref|XP_002059063.1| GJ15198 [Drosophila virilis] gi|194141715|gb|EDW58132.1| GJ15198 [Drosophila virilis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 65/100 (65%)

Query: 23  FTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALAD 82
           F  P +K ++ +VY  F+I Y    L GV LNI  I +I+  RL++D T  + IN+A   
Sbjct: 58  FNGPILKASIKSVYWLFLIQYAALALLGVILNIAIIVYIMYHRLYKDVTHAFIINLAFCH 117

Query: 83  IIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
            ++C  VLPI+LMV L+QNW +G FLC+FLPMLQ IP  +
Sbjct: 118 FVQCALVLPISLMVMLLQNWIFGQFLCFFLPMLQDIPLHV 157

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234095|ref|XP_967232.2| PREDICTED: similar to AGAP000383-PA [Tribolium castaneum] gi|270002890|gb|EEZ99337.1| hypothetical protein TcasGA2_TC004565 [Tribolium castaneum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%)

Query: 18  NFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFIN 77
           N  +D  KPH++P++ + Y F + +Y + I++GVALN+    HI+  +L  D TC + +N
Sbjct: 31  NPKLDLRKPHLRPSVASSYPFILFMYSLLIVTGVALNVSVFIHIVRNKLQNDVTCSFVLN 90

Query: 78  IALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIP 119
             ++DI+KC+ VLPITL V L+ NW  G  LC FLPMLQ IP
Sbjct: 91  NVISDIVKCVVVLPITLYVLLINNWILGELLCSFLPMLQDIP 132

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567529|ref|XP_002107312.1| GD15634 [Drosophila simulans] gi|194204718|gb|EDX18294.1| GD15634 [Drosophila simulans]

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 4/122 (3%)

Query: 5   KYYESLAEGMK-SQNFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY  +L+  +    N T+D  +   P +K ++ +VY  F+I Y    L GV LN+  + +
Sbjct: 63  KYVTALSHFLDWHSNGTVDMERLSGPILKSSIKSVYWLFLIQYAALALLGVVLNVIIVVY 122

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct: 123 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQDIPL 182

Query: 121 RI 122
            +
Sbjct: 183 HV 184

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481344|ref|XP_002101612.1| GE15527 [Drosophila yakuba] gi|194189136|gb|EDX02720.1| GE15527 [Drosophila yakuba]

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 4/116 (3%)

Query: 5   KYYESLAEGMK-SQNFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY  +L+  +    N T+D  +   P +K ++ +VY  F+I Y    L GV LN+  + +
Sbjct: 63  KYVTALSHFLDWHSNGTVDMERLSGPILKSSIKSVYWLFLIQYAALALLGVVLNVIIVVY 122

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ
Sbjct: 123 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQ 178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766706|ref|XP_001965465.1| GF22505 [Drosophila ananassae] gi|190619456|gb|EDV34980.1| GF22505 [Drosophila ananassae]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 4/116 (3%)

Query: 5   KYYESLAEGMKSQ-NFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY  ++A  +  Q N T+D  +   P +K T+ +VY  F+I Y    L GV LN+  + +
Sbjct: 70  KYTMAIAHFLDWQENDTLDMEQLKGPILKSTIKSVYWLFLIQYATLALLGVVLNVAIVVY 129

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
           I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ
Sbjct: 130 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLLQNWIFGQFLCFFLPMLQ 185

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130817|ref|XP_002009847.1| GI15592 [Drosophila mojavensis] gi|193908297|gb|EDW07164.1| GI15592 [Drosophila mojavensis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 5   KYYESLAEGMKSQ-NFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           KY+  +A  +    N T D  +   P +K ++ +VY  F+I Y    L GV LNI  I +
Sbjct: 36  KYFMVIAHLLAGHINDTEDMERVNGPILKASIKSVYWLFLIQYATLALLGVILNIAIIVY 95

Query: 61  IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
           I+  RL++D T  + IN+A    ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct: 96  IMYNRLYKDVTHAFIINLAFCHFVQCALVLPVSLMVMLLQNWIFGQFLCFFLPMLQDIPI 155

Query: 121 RI 122
            +
Sbjct: 156 HV 157

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
FB|FBgn0052547	1008	CG32547 [Drosophila melanogast	0.951	0.117	0.409	3.2e-21
ZFIN|ZDB-GENE-040924-9	372	npy7r "neuropeptide Y receptor	0.782	0.260	0.371	1.3e-10
ZFIN|ZDB-GENE-040924-8	384	npy2r "neuropeptide Y receptor	0.685	0.221	0.352	4.9e-09
UNIPROTKB|Q9DDN6	385	NPY2R "Neuropeptide Y receptor	0.790	0.254	0.34	4.9e-09
UNIPROTKB|Q30D05	385	NPY7R "Uncharacterized protein	0.709	0.228	0.340	1e-08
FB|FBgn0036934	600	sNPF-R "short neuropeptide F r	0.661	0.136	0.304	2.2e-08
UNIPROTKB|F1RYR8	382	NPY2R "Neuropeptide Y receptor	0.75	0.243	0.326	2.8e-08
UNIPROTKB|O02836	382	NPY2R "Neuropeptide Y receptor	0.75	0.243	0.326	2.8e-08
FB|FBgn0037408	485	NPFR1 "neuropeptide F receptor	0.669	0.171	0.329	3.3e-08
ZFIN|ZDB-GENE-980526-208	375	npy8br "neuropeptide Y recepto	0.701	0.232	0.287	5.7e-08

FB|FBgn0052547 CG32547 [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 50/122 (40%), Positives = 76/122 (62%)

Query:     5 KYYESLAEGMK-SQNFTIDFTK---PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
             KY  +L+  +    N T+D  +   P +K ++ +VY  F+I Y    L GV LN+  + +
Sbjct:    66 KYVTALSHFLDWHSNGTVDMERLSGPILKSSIKSVYWLFLIQYAALALLGVVLNVIIVVY 125

Query:    61 IIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF 120
             I+  RL++D T  + IN+AL   ++C  VLP++LMV L+QNW +G FLC+FLPMLQ IP 
Sbjct:   126 IMYHRLYKDVTHAFIINLALCHFVQCALVLPVSLMVMLIQNWIFGQFLCFFLPMLQDIPL 185

Query:   121 RI 122
              +
Sbjct:   186 HV 187

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

ZFIN|ZDB-GENE-040924-9 npy7r "neuropeptide Y receptor Y7" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 39/105 (37%), Positives = 57/105 (54%)

Query:    19 FTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-N 77
             F  D TK H     L+V +  I+ Y + IL G+  N   IY II+ R  R  T  YFI N
Sbjct:    36 FVDDITK-H-----LSVQISLILAYSLIILLGLVGNTLVIYMIILYRNMRTVT-NYFIAN 88

Query:    78 IALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
             +ALAD++     LP TL+ TL+  W +G+ +C+ +P  Q +   +
Sbjct:    89 LALADLMVDTVCLPFTLVYTLLDEWKFGAVMCHMVPYSQALSVHV 133

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IC

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS

GO:0007218 "neuropeptide signaling pathway" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-040924-8 npy2r "neuropeptide Y receptor Y2" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 30/85 (35%), Positives = 42/85 (49%)

Query:    32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLP 91
             L+ V V  I+ Y   I  G+  N   IY +   R     T  + +N+A+AD++     LP
Sbjct:    51 LVGVQVILILAYSTIIFFGMTGNSLVIYVVYKFRNLHTVTNYFIVNLAVADLLVNTLCLP 110

Query:    92 ITLMVTLVQNWTWGSFLCYFLPMLQ 116
              TLM TL   W +G  +CY LP  Q
Sbjct:   111 FTLMYTLYGEWKFGQVMCYLLPYAQ 135

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IC

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0042923 "neuropeptide binding" evidence=IPI

UNIPROTKB|Q9DDN6 NPY2R "Neuropeptide Y receptor type 2" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 34/100 (34%), Positives = 50/100 (50%)

Query:    25 KPHIKP--TLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALAD 82
             KP +K   TL+ V +  I  Y   IL GV  N   I+ II  +  R  T  +  N+A+AD
Sbjct:    41 KPELKDSTTLVEVQIILIFAYCSIILLGVIGNSLVIHVIIKFKSMRTVTNFFIANLAVAD 100

Query:    83 IIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
             ++     LP TL+ TL+  W  G  LC+ +P  Q +   +
Sbjct:   101 LLVNTLCLPFTLVYTLLGEWKLGPVLCHLVPYAQALAVHV 140

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0003214 "cardiac left ventricle morphogenesis" evidence=IEA

UNIPROTKB|Q30D05 NPY7R "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 30/88 (34%), Positives = 45/88 (51%)

Query:    35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 94
             V V  I  Y + IL G   N   IY I+  +  R  T  +  N+ALAD++     LP TL
Sbjct:    54 VQVVLIAAYSLIILLGFIGNSLVIYIIVKYKTMRTVTNLFIANLALADLMVDTLCLPFTL 113

Query:    95 MVTLVQNWTWGSFLCYFLPMLQLIPFRI 122
             + TL+  W +G+ LC+ +P  Q +   +
Sbjct:   114 VYTLLDEWKFGAVLCHLVPYAQALSVHV 141

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0036934 sNPF-R "short neuropeptide F receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 94
             V +FF +LY    + GV  N+   Y ++  R  +  T  +  N+AL+DI+ C+  +P T 
Sbjct:    62 VQIFFYVLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPFTP 121

Query:    95 MVTLVQNWTWGSFLCYFLPMLQ 116
             + T +  W +G  LC+ +   Q
Sbjct:   122 LYTFMGRWAFGRSLCHLVSFAQ 143

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0007218 "neuropeptide signaling pathway" evidence=ISS

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0004995 "tachykinin receptor activity" evidence=ISS

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|F1RYR8 NPY2R "Neuropeptide Y receptor type 2" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 31/95 (32%), Positives = 49/95 (51%)

Query:    24 TKPHIKPT--LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALA 81
             ++P +K +  L+ V +  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+A
Sbjct:    37 SEPELKDSTKLIEVQIILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVA 96

Query:    82 DIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
             D++     LP TL  TL+  W  G  LC+ +P  Q
Sbjct:    97 DLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQ 131

GO:0003214 "cardiac left ventricle morphogenesis" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O02836 NPY2R "Neuropeptide Y receptor type 2" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 31/95 (32%), Positives = 49/95 (51%)

Query:    24 TKPHIKPT--LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALA 81
             ++P +K +  L+ V +  I+ Y   IL GV  N   I+ +I  +  R  T  +  N+A+A
Sbjct:    37 SEPELKDSTKLIEVQIILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVA 96

Query:    82 DIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
             D++     LP TL  TL+  W  G  LC+ +P  Q
Sbjct:    97 DLLVNTLCLPFTLTYTLMGEWKMGPVLCHLVPYAQ 131

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

FB|FBgn0037408 NPFR1 "neuropeptide F receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query:    36 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95
             Y   I +YGV I+ G   N   +  +I + + R A   + +N+A++D++ C+  +P+TLM
Sbjct:    86 YHMLISMYGVLIVFGALGNTLVVIAVIRKPIMRTARNLFILNLAISDLLLCLVTMPLTLM 145

Query:    96 VTLVQNWTWGS--FLCYFLPMLQLI 118
               L + W +GS   LC  + MLQ +
Sbjct:   146 EILSKYWPYGSCSILCKTIAMLQAL 170

GO:0004983 "neuropeptide Y receptor activity" evidence=ISS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS

GO:0004995 "tachykinin receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042263 "neuropeptide F receptor activity" evidence=IDA;NAS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0030536 "larval feeding behavior" evidence=IMP

ZFIN|ZDB-GENE-980526-208 npy8br "neuropeptide Y receptor Y8b" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query:    30 PTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFV 89
             P  L+   F I+ Y   +  G+  N   +  I  ++  R+ T  + +N++ +DI+ C+  
Sbjct:    19 PASLSSTTFLIVAYSTMLAVGLVGNTCLVVVITRQKEMRNVTNIFIVNLSCSDILVCLVC 78

Query:    90 LPITLMVTLVQNWTWGSFLCYFLPMLQ 116
             LP+T++ TL+  W  G  LC   P +Q
Sbjct:    79 LPVTIIYTLMDRWILGEALCKVTPFVQ 105

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	0.002

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 40  IILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV 99
           I++Y      G+  NI  IY ++ +   +     Y +N+A++D++  M  LP  +   ++
Sbjct: 44  IVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYIL 101

Query: 100 QNWTWGSFLCYFLPMLQLIPF 120
             W++G F C  +  L  I F
Sbjct: 102 FQWSFGEFACKIVSGLYYIGF 122

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG4219|consensus	423		99.78
PHA03234	338	DNA packaging protein UL33; Provisional	99.78
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.58
PHA02834	323	chemokine receptor-like protein; Provisional	99.58
PHA03235	409	DNA packaging protein UL33; Provisional	99.52
KOG4220|consensus	503		99.5
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.39
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.24
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.37
KOG2087|consensus	363		98.1
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.59
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.58
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.21
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.06
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	96.51
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.19
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	94.95
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	91.87
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	90.25
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.96

>KOG4219|consensus

Probab=99.78  E-value=2.3e-19  Score=130.18  Aligned_cols=95  Identities=23%  Similarity=0.450  Sum_probs=86.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy1135          29 KPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFL  108 (124)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~  108 (124)
                      .......+.+..++|+++++++++||++|++++..+|++|+.+|+|++|||+||++++++..|+...+.+.+.|.+|.+.
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            33345677788999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             ccccchhhhhhhccc
Q psy1135         109 CYFLPMLQLIPFRIY  123 (124)
Q Consensus       109 C~~~~~~~~~~~~~S  123 (124)
                      |++..|+......+|
T Consensus       108 C~f~nf~~itav~vS  122 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVS  122 (423)
T ss_pred             eeeccccchhhhhHh
Confidence            999999888776655

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.78  E-value=1.5e-18  Score=126.35  Aligned_cols=89  Identities=10%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHI--IVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCY  110 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i--~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~  110 (124)
                      +..+.+.+.+|++++++|++||++|++++  .+++++|+++|+|++|||+||+++++ ..|+.... ..++|++|+..||
T Consensus        29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~-~~~~w~fG~~lCk  106 (338)
T PHA03234         29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLN-REALFNFNQAFCQ  106 (338)
T ss_pred             HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCCccCchhHHH
Confidence            45677889999999999999999999955  45567799999999999999999865 66776554 3457999999999


Q ss_pred             ccchhhhhhhccc
Q psy1135         111 FLPMLQLIPFRIY  123 (124)
Q Consensus       111 ~~~~~~~~~~~~S  123 (124)
                      +.+++..+++++|
T Consensus       107 ~~~~~~~~~~~~S  119 (338)
T PHA03234        107 CVLFIYHASCSYS  119 (338)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888776

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.58  E-value=1.9e-14  Score=107.41  Aligned_cols=87  Identities=21%  Similarity=0.414  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLP  113 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~  113 (124)
                      ....+...+|.+++++|++||+++++++. +|++|+++|++++|||++|++. ++..|+++... .++|.+|+..|++..
T Consensus        96 ~~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~  172 (417)
T PHA02638         96 SISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVIS  172 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHH
Confidence            35678889999999999999999998655 5889999999999999999986 56899987654 468999999999988


Q ss_pred             hhhhhhhccc
Q psy1135         114 MLQLIPFRIY  123 (124)
Q Consensus       114 ~~~~~~~~~S  123 (124)
                      +....+.++|
T Consensus       173 ~l~~~~~~~S  182 (417)
T PHA02638        173 ASYYIGFFSN  182 (417)
T ss_pred             HHHHHHHHHH
Confidence            7766665543

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.58  E-value=1.1e-14  Score=105.38  Aligned_cols=86  Identities=26%  Similarity=0.548  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccch
Q psy1135          35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPM  114 (124)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~  114 (124)
                      .+.+..+++.+++++|++||+++++++.++|++ ++.|+|+.|||+||++. .+.+|+.+... .++|.+|+..|++.++
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~  103 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLG  103 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHH
Confidence            455678999999999999999999988876554 57899999999999985 66899876544 4579999999999887


Q ss_pred             hhhhhhccc
Q psy1135         115 LQLIPFRIY  123 (124)
Q Consensus       115 ~~~~~~~~S  123 (124)
                      ....+..+|
T Consensus       104 ~~~~~~~~S  112 (323)
T PHA02834        104 VYFVGFFSN  112 (323)
T ss_pred             HHHHHHHHH
Confidence            766665443

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.52  E-value=8.3e-14  Score=103.78  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLF--RDATCGYFINIALADIIKCMFVLPITLMVTLVQNWT--WGSFL  108 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l--~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~--~g~~~  108 (124)
                      ...+.+..+++.+++++|++||++|++++.+++++  ++..++|+.|||++|++. ++.+|+.+..   +.|.  .|...
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~  104 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAG  104 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCe
Confidence            45677889999999999999999999876543333  456789999999999985 6689987643   3444  45789


Q ss_pred             ccccchhhhhhhccc
Q psy1135         109 CYFLPMLQLIPFRIY  123 (124)
Q Consensus       109 C~~~~~~~~~~~~~S  123 (124)
                      |++.++...+++.+|
T Consensus       105 Ck~~~~l~~~~~~~S  119 (409)
T PHA03235        105 CKFASLLYYASCTVG  119 (409)
T ss_pred             ehhHHHHHHHHHHHH
Confidence            999998887776654

>KOG4220|consensus

Probab=99.50  E-value=3.2e-16  Score=114.44  Aligned_cols=87  Identities=22%  Similarity=0.398  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135          37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ  116 (124)
Q Consensus        37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~  116 (124)
                      +++.++.+.+.++.++||++|++.+.-.|++|+..|+|+++||+||++++.+++|+...+.+.|+|++|...|.+--.+.
T Consensus        31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD  110 (503)
T KOG4220|consen   31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD  110 (503)
T ss_pred             EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             hhhhccc
Q psy1135         117 LIPFRIY  123 (124)
Q Consensus       117 ~~~~~~S  123 (124)
                      ++...+|
T Consensus       111 YvaSNAS  117 (503)
T KOG4220|consen  111 YVASNAS  117 (503)
T ss_pred             HHhhhhh
Confidence            7665544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.39  E-value=6.9e-13  Score=96.07  Aligned_cols=89  Identities=24%  Similarity=0.472  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFL  112 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~  112 (124)
                      ...+.+...++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|........++|.+|+..|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV  114 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence            34566778899999999999999999988887 9999999999999999998654 678776666667899999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .+.......+|
T Consensus       115 ~~~~~~~~~~S  125 (335)
T PHA03087        115 SGLYYIGFYNS  125 (335)
T ss_pred             HHHHHHHHHHH
Confidence            88777665543

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.24  E-value=1.4e-11  Score=84.30  Aligned_cols=71  Identities=25%  Similarity=0.485  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhccc
Q psy1135          53 LNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPFRIY  123 (124)
Q Consensus        53 gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S  123 (124)
                      ||++++.++.++|++|++.++|+.|||++|++.++...|..+.....++|.+++..|++..++......+|
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s   71 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSS   71 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999998888777777889999999999988777665543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.37  E-value=1e-07  Score=67.18  Aligned_cols=69  Identities=17%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhh
Q psy1135          48 LSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI  118 (124)
Q Consensus        48 ~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~  118 (124)
                      ++|++||...+.++.|+|++|+|.++++..+|++|++......|.... .+ ++-......|-.+.+...+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~-~~-~~~~i~~~~Cf~~~~~~~f   70 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF-LF-RDHQITRSECFWQIFFYIF   70 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH-HH-hheeccHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999988877777652 22 2223455577665554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=98.10  E-value=9.3e-07  Score=64.37  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-----
Q psy1135          27 HIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV-Q-----  100 (124)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~-~-----  100 (124)
                      ..+.+....+.++-+.-+++..++++||.+|+......|...++..+++.|||.||+++++...-+..+.... +     
T Consensus        15 ~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~   94 (363)
T KOG2087|consen   15 FNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKH   94 (363)
T ss_pred             CCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHH
Confidence            3344444555566677889999999999999999998898899999999999999999887665554443322 1     


Q ss_pred             --ccccccccccccchhhhhhh
Q psy1135         101 --NWTWGSFLCYFLPMLQLIPF  120 (124)
Q Consensus       101 --~w~~g~~~C~~~~~~~~~~~  120 (124)
                        .|. +...|++.+|+..++.
T Consensus        95 ai~W~-tg~gC~~aGflavFAS  115 (363)
T KOG2087|consen   95 AIDWQ-TGLGCPVAGFLAVFAS  115 (363)
T ss_pred             HHhhh-hcCCCchHHHHHHHHH
Confidence              254 5569999998776653

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.59  E-value=0.0006  Score=49.39  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135          37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ  116 (124)
Q Consensus        37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~  116 (124)
                      ....++..+...++++|-+.++....+.|++|++.+-++.-++++|++..+......    ..+.-.-+...|+++++..
T Consensus         7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafli   82 (303)
T PF05462_consen    7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLI   82 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHH
Confidence            345567777788999999999999999999999999999999999998665443322    1122234577999999988


Q ss_pred             hhhhccc
Q psy1135         117 LIPFRIY  123 (124)
Q Consensus       117 ~~~~~~S  123 (124)
                      .....+|
T Consensus        83 q~f~~as   89 (303)
T PF05462_consen   83 QFFMLAS   89 (303)
T ss_pred             HHhhHHH
Confidence            7776554

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.58  E-value=0.00055  Score=46.76  Aligned_cols=56  Identities=16%  Similarity=0.054  Sum_probs=41.5

Q ss_pred             CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhh
Q psy1135          65 RLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLIPF  120 (124)
Q Consensus        65 ~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~~~  120 (124)
                      +++|.-.+-+++||.++|++.++..+.........+.-.-+...|.+++++...+.
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~   85 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGD   85 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHH
Confidence            56667778899999999999888665544444444444456789999999887654

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.21  E-value=0.0041  Score=45.02  Aligned_cols=78  Identities=13%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy1135          35 VYVFFIILYGVTILSGVALNIFAIYHIIV---ERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF  111 (124)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~gN~lvi~~i~~---~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~  111 (124)
                      ...+..++..+.+++|++||+.++.+-.+   ++|.-.|.+..+.+||++.++......-.........+....+..++.
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI   84 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence            34556788888999999999998876655   344457999999999999999665444333333322232233334444


Q ss_pred             c
Q psy1135         112 L  112 (124)
Q Consensus       112 ~  112 (124)
                      .
T Consensus        85 ~   85 (303)
T PF05296_consen   85 I   85 (303)
T ss_pred             H
Confidence            3

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.06  E-value=0.0011  Score=47.74  Aligned_cols=52  Identities=21%  Similarity=0.399  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1135          46 TILSGVALNIFAIYHIIVERLFRD-ATCGYFINIALADIIKCMFVLPITLMVTL   98 (124)
Q Consensus        46 ~~~~g~~gN~lvi~~i~~~~~l~~-~~~~~l~nLa~aDl~~~~~~~p~~~~~~~   98 (124)
                      +.++|+++|..-+. ++.+|.+|+ +.|.+++.+|++|+...+...+.......
T Consensus         6 ~~~~g~~~N~~h~~-VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~   58 (318)
T PF10324_consen    6 LSIFGLFINIFHLI-VLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFI   58 (318)
T ss_pred             EeHHHHHHHHHHhh-hcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999887 666788885 89999999999999988888777664443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.51  E-value=0.0068  Score=42.98  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHH
Q psy1135          46 TILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFV   89 (124)
Q Consensus        46 ~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~   89 (124)
                      +.++|++.|.+++..+.|.+++|++-+.+-.+.|++|.+.++..
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~   46 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF   46 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999977643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.19  E-value=0.26  Score=36.04  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHH
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCM   87 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~   87 (124)
                      ..+....+.+.+.+++-.+-+...+.++.+++..|.+.+-.+.=||+.|++-..
T Consensus        30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~   83 (313)
T PF10321_consen   30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLF   83 (313)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence            345566777888888888899999999998888889999999999999999543

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.95  E-value=0.11  Score=37.35  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccccccccc
Q psy1135          41 ILYGVTILSGVALNIFAIYHIIVERLF-RDATCGYFINIALADIIKCMFVLPITLMVTLVQNWT---WGSFLCYFLP  113 (124)
Q Consensus        41 ~~~~~~~~~g~~gN~lvi~~i~~~~~l-~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~---~g~~~C~~~~  113 (124)
                      +++.+.+.+|++.|.+.++.+.++.-. -+...+++.|-|+.|++.+... .+........++.   .....|+..+
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~-~~~q~R~i~~~~~~~~~~~GpC~~~~   78 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISA-FLTQPRIIPNGTSIAVISYGPCRYFG   78 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCCCCcEEEEeeecceecC
Confidence            356788999999999999877776433 3668999999999999965533 3333333332222   2344666544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.87  E-value=0.47  Score=33.92  Aligned_cols=52  Identities=13%  Similarity=0.029  Sum_probs=35.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhh
Q psy1135          66 LFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI  118 (124)
Q Consensus        66 ~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~  118 (124)
                      .+..|++.-+.|||+|+.++.+.-...........+ .+++..||+..|..-+
T Consensus         6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV   57 (265)
T PF03402_consen    6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRV   57 (265)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHH
Confidence            455679999999999999976654332322222222 3689999988876543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.25  E-value=0.2  Score=34.60  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=2.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccccccchhhhhhhc
Q psy1135          44 GVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTW--GSFLCYFLPMLQLIPFR  121 (124)
Q Consensus        44 ~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~--g~~~C~~~~~~~~~~~~  121 (124)
                      .+-..+++++-.+++......|++|+..+....||++++++..+..+..   .........  .+..|+..+.+.+....
T Consensus         8 ~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~---~~~~~~~~~~~~~~~C~~~a~~~hy~~l   84 (242)
T PF00002_consen    8 YVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG---ISQTFSPISTTNHCLCRAIAILLHYFFL   84 (242)
T ss_dssp             HHHHH---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee---hhhccccccccccccchhhhhHhHHHHH
Confidence            3334444555555566566668888888888999999998865433221   111111111  22359988887666544


Q ss_pred             c
Q psy1135         122 I  122 (124)
Q Consensus       122 ~  122 (124)
                      +
T Consensus        85 a   85 (242)
T PF00002_consen   85 A   85 (242)
T ss_dssp             -
T ss_pred             H
Confidence            3

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.96  E-value=2.7  Score=26.52  Aligned_cols=24  Identities=21%  Similarity=0.058  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHhhCccCChhH
Q psy1135          49 SGVALNIFAIYHIIVERLFRDATC   72 (124)
Q Consensus        49 ~g~~gN~lvi~~i~~~~~l~~~~~   72 (124)
                      +|++|=++.|+..+||+++|.+.+
T Consensus        75 aGvIg~Illi~y~irR~~Kk~~~~   98 (122)
T PF01102_consen   75 AGVIGIILLISYCIRRLRKKSSSD   98 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCC
Confidence            355555555655556555555444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		8e-04

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 39  FIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTL 98
            +++     L  V LN+  +Y +  ER        Y +++++AD+I    V+P+ ++  L
Sbjct: 11  LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70
Query: 99  VQNWTWGSFLCYF 111
           +  W+ G  LC F
Sbjct: 71  MSKWSLGRPLCLF 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-11
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-09
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-08
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	8e-08
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-07
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	3e-07
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-07
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	7e-07
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	3e-06
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	1e-05
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-05
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-05
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	5e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-05

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 16  SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
           S N + + ++P+         V +   Y V +++ V  N+  ++ I+  +  R  T  YF
Sbjct: 12  SPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVT-NYF 70

Query: 76  I-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
           + N+A A+     F   +     +   W +G F C F     + 
Sbjct: 71  LVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIA 114

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 14  MKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCG 73
           M     + D +     P      VF +++ G   L  +  NI  +  I V R  +     
Sbjct: 1   MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVN-N 59

Query: 74  YFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
           YF+ ++A AD+I  +F + +  + T++  W  G  +C
Sbjct: 60  YFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVC 96

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 48.2 bits (114), Expect = 8e-08
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 16  SQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYF 75
           + N +        +       V   I+  + +L+ V  N+  I  I      +  T  YF
Sbjct: 20  APNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVT-NYF 78

Query: 76  I-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
           I ++A AD++  + V+P      L++ WT+G+F C
Sbjct: 79  ITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWC 113

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 26  PHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIK 85
           P      +   +  + LY +  + G+  N   +Y I+     + AT  Y  N+ALAD + 
Sbjct: 7   PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL- 65

Query: 86  CMFVLPITLMVTLVQNWTWGSFLCYFLPMLQLI 118
               LP   +  L+  W +G+ LC  +  +   
Sbjct: 66  ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYY 98

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 1   MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
            D      SL++     N+T          +    + ++ + Y   IL+ V  N      
Sbjct: 4   DDDDGAPASLSQLSSHLNYTCGAENS-TGASQARPHAYYALSYCALILAIVFGNGLVCMA 62

Query: 61  IIVERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLV-QNWTWGSFLC 109
           ++ ER  +  T  Y + ++A+AD++    V+P  + + +    W +    C
Sbjct: 63  VLKERALQTTT-NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC 112

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 37/74 (50%)

Query: 36  YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLM 95
            +  +++     L  V LN+  +Y +  ER        Y +++++AD+I    V+P+ ++
Sbjct: 8   LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67

Query: 96  VTLVQNWTWGSFLC 109
             L+  W+ G  LC
Sbjct: 68  YLLMSKWSLGRPLC 81

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 17/102 (16%), Positives = 32/102 (31%)

Query: 15  KSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGY 74
           K+      F  P         +        + I+ G  +N   +Y  +  +  R      
Sbjct: 17  KTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI 76

Query: 75  FINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ 116
            +N+A+AD+         TL  +L   + +G   C       
Sbjct: 77  LLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 17  QNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI 76
            N+T        K   + +     IL    I+     NIF +  I   + F      YFI
Sbjct: 47  YNYTGKLNISADKENSIKLTSVVFILICCFIILE---NIFVLLTIWKTKKFHRPM-YYFI 102

Query: 77  -NIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF 111
            N+AL+D++  +      L+ +    +       + 
Sbjct: 103 GNLALSDLLAGVAYTANLLL-SGATTYKLTPAQWFL 137

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 37  VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFI-NIALADIIKCMFVLPITLM 95
             +I +     +  +  N+   + + +    ++ T  YF+ ++A ADI   +  +P  + 
Sbjct: 22  SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVT-NYFVVSLAAADIAVGVLAIPFAIT 80

Query: 96  VTLVQNWTWGSFLCYF 111
           ++    +      C F
Sbjct: 81  IST--GFCAACHGCLF 94

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 35  VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 94
             +F   +Y +  L+G+  N   I  +  ++  R  T  Y +++++AD++  +  LP   
Sbjct: 47  NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLL-FVITLPF-W 104

Query: 95  MVTLVQNWTWGSFLCYFLPMLQLI 118
            V  V NW +G+FLC  + ++  +
Sbjct: 105 AVDAVANWYFGNFLCKAVHVIYTV 128

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 1   MDGSKYYESLAEGMKSQNFTIDFTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYH 60
           +  S++Y       K    T                V   I+  + +L+ V  N+  I  
Sbjct: 147 LAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITA 206

Query: 61  IIVERLFRDATCGYFI-NIALADIIKCMFVLPITLMVTLVQNWTWGSFLC 109
           I      +  T  YFI ++A AD++  + V+P      L + WT+G+F C
Sbjct: 207 IAKFERLQTVT-NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWC 255

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 9/73 (12%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 37  VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMV 96
             +I +     +  +  N+   + + +    ++ T  + +++A ADI   +  +P  + +
Sbjct: 32  SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI 91

Query: 97  TLVQNWTWGSFLC 109
           +    +      C
Sbjct: 92  ST--GFCAACHGC 102

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 35  VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMF-VLPIT 93
           VY    I  G+  + G   N   IY     +  +     + IN+A +D    +    P+ 
Sbjct: 33  VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92

Query: 94  LMVTLVQNWTWGSFLCYF 111
            +   ++ W +G   C  
Sbjct: 93  TISCFLKKWIFGFAACKV 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.77
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.76
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.75
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.74
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.73
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.73
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.71
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.69
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.66
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.65
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.65
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.64
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.64
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.64
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.64
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.63
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.63
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.62
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.52

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.77  E-value=6e-19  Score=132.56  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccc
Q psy1135          32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLF---RDATCGYFINIALADIIKCMFVLPITLMVTLV--QNWTWGS  106 (124)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l---~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~--~~w~~g~  106 (124)
                      ....+++..++|.+++++|++||++|++++.+.|++   |+++|+|++|||+||++++++.+|+.+.....  +.|.+|+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            345667888999999999999999999999887654   58899999999999999999999998887654  4699999


Q ss_pred             ccccccchhhhhhhccc
Q psy1135         107 FLCYFLPMLQLIPFRIY  123 (124)
Q Consensus       107 ~~C~~~~~~~~~~~~~S  123 (124)
                      .+|++..++..++.++|
T Consensus       108 ~~C~~~~~~~~~~~~~S  124 (510)
T 4grv_A          108 AGCRGYYFLRDACTYAT  124 (510)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999888877665

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.76  E-value=2.8e-18  Score=121.91  Aligned_cols=93  Identities=16%  Similarity=0.238  Sum_probs=82.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy1135          31 TLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCY  110 (124)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~  110 (124)
                      ..+....+..+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....+.|.+|...|+
T Consensus        33 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~  112 (349)
T 1u19_A           33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN  112 (349)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHH
Confidence            34556667888999999999999999999999999999999999999999999999989999888888889999999999


Q ss_pred             ccchhhhhhhccc
Q psy1135         111 FLPMLQLIPFRIY  123 (124)
Q Consensus       111 ~~~~~~~~~~~~S  123 (124)
                      +..++...+..+|
T Consensus       113 ~~~~~~~~~~~~s  125 (349)
T 1u19_A          113 LEGFFATLGGEIA  125 (349)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988877765544

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.75  E-value=9.9e-18  Score=120.06  Aligned_cols=88  Identities=19%  Similarity=0.434  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchh
Q psy1135          36 YVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPML  115 (124)
Q Consensus        36 ~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~  115 (124)
                      ..+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++...|..+.....++|.+|+..|++..++
T Consensus        32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~  111 (364)
T 2ks9_A           32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF  111 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHH
Confidence            34557889999999999999999999999999999999999999999999999999988888888999999999999887


Q ss_pred             hhhhhccc
Q psy1135         116 QLIPFRIY  123 (124)
Q Consensus       116 ~~~~~~~S  123 (124)
                      ..++..+|
T Consensus       112 ~~~~~~~s  119 (364)
T 2ks9_A          112 PIAAVFAS  119 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77765544

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.74  E-value=4.5e-18  Score=127.28  Aligned_cols=92  Identities=22%  Similarity=0.292  Sum_probs=83.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy1135          32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF  111 (124)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~  111 (124)
                      ...+..+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+...+.+.|.+|...|++
T Consensus        36 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~  115 (500)
T 2rh1_A           36 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF  115 (500)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhH
Confidence            34566778899999999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             cchhhhhhhccc
Q psy1135         112 LPMLQLIPFRIY  123 (124)
Q Consensus       112 ~~~~~~~~~~~S  123 (124)
                      ..++..++.++|
T Consensus       116 ~~~~~~~~~~~S  127 (500)
T 2rh1_A          116 WTSIDVLCVTAS  127 (500)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988877766554

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.73  E-value=1.4e-17  Score=116.70  Aligned_cols=88  Identities=30%  Similarity=0.488  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLP  113 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~  113 (124)
                      ..+.+..++|.+++++|++||+++++++.++|++|+++|+|+.|||++|+++++ ..|+..... .++|.+|+..|+...
T Consensus         9 ~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~-~~~~~~~~~~c~~~~   86 (296)
T 2lnl_A            9 LNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASK-VNGWIFGTFLCKVVS   86 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHH-HSSSCCSSHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhc-cCCCccchhHHHHHh
Confidence            345677889999999999999999999999999999999999999999999765 677776654 457999999999999


Q ss_pred             hhhhhhhccc
Q psy1135         114 MLQLIPFRIY  123 (124)
Q Consensus       114 ~~~~~~~~~S  123 (124)
                      +....+..+|
T Consensus        87 ~~~~~~~~~s   96 (296)
T 2lnl_A           87 LLKEVNFYSG   96 (296)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhhhHHHH
Confidence            8887776654

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.73  E-value=7.7e-18  Score=123.87  Aligned_cols=90  Identities=21%  Similarity=0.373  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLP  113 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~  113 (124)
                      ....+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|+.+.....+.|.+|...|++..
T Consensus        21 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  100 (467)
T 3uon_A           21 FEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWL  100 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             hhhhhhhccc
Q psy1135         114 MLQLIPFRIY  123 (124)
Q Consensus       114 ~~~~~~~~~S  123 (124)
                      ++..++.++|
T Consensus       101 ~~~~~~~~~s  110 (467)
T 3uon_A          101 ALDYVVSNAS  110 (467)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887776654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.71  E-value=8.9e-18  Score=124.08  Aligned_cols=90  Identities=18%  Similarity=0.339  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccccccc
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLV-QNWTWGSFLCYFL  112 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~-~~w~~g~~~C~~~  112 (124)
                      ..+.+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|+.+..... +.|.+|...|++.
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            345566788999999999999999999999999999999999999999999999999998877776 5799999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .++..++.++|
T Consensus       116 ~~~~~~~~~~s  126 (481)
T 3pbl_A          116 VTLDVMMCTAS  126 (481)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98877776654

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.69  E-value=8.6e-17  Score=118.07  Aligned_cols=90  Identities=23%  Similarity=0.423  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFL  112 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~  112 (124)
                      .....+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|+++++. +|+.+.....+.|.+|...|++.
T Consensus        14 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~   92 (464)
T 4dkl_A           14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIV   92 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhH
Confidence            44567888999999999999999999999999999999999999999999998775 99999999889999999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .++..++..+|
T Consensus        93 ~~~~~~~~~~s  103 (464)
T 4dkl_A           93 ISIDYYNMFTS  103 (464)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887776654

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.66  E-value=2.3e-16  Score=117.05  Aligned_cols=90  Identities=21%  Similarity=0.414  Sum_probs=79.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy1135          32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYF  111 (124)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~  111 (124)
                      ....+.+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|+++ ++.+|+.+..... +|.+|...|++
T Consensus        44 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~-~~~~p~~~~~~~~-~~~~~~~~C~~  121 (502)
T 3odu_A           44 ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKA  121 (502)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHT-CCCSHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-CCcCCchhhhh
Confidence            345677888999999999999999999999999999999999999999999998 4688998776554 79999999999


Q ss_pred             cchhhhhhhccc
Q psy1135         112 LPMLQLIPFRIY  123 (124)
Q Consensus       112 ~~~~~~~~~~~S  123 (124)
                      ..++..++..+|
T Consensus       122 ~~~~~~~~~~~s  133 (502)
T 3odu_A          122 VHVIYTVNLYSS  133 (502)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887776654

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=116.99  Aligned_cols=87  Identities=22%  Similarity=0.491  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135          37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ  116 (124)
Q Consensus        37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~  116 (124)
                      .+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|+.+.....++|.+|...|++..++.
T Consensus         9 ~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~   88 (452)
T 3rze_A            9 MPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMD   88 (452)
T ss_dssp             CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999998899999999999999988


Q ss_pred             hhhhccc
Q psy1135         117 LIPFRIY  123 (124)
Q Consensus       117 ~~~~~~S  123 (124)
                      .++.++|
T Consensus        89 ~~~~~~s   95 (452)
T 3rze_A           89 YVASTAS   95 (452)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.65  E-value=1.2e-16  Score=111.69  Aligned_cols=91  Identities=23%  Similarity=0.372  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFL  112 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~  112 (124)
                      ...+....+++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....++|.+|+..|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   87 (315)
T 4amj_A            8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHH
Confidence            34566778899999999999999999999999999999999999999999998888999998888889999999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .++...+..+|
T Consensus        88 ~~~~~~~~~~S   98 (315)
T 4amj_A           88 TSLDVLCVTAS   98 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98877766554

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.64  E-value=4e-17  Score=122.44  Aligned_cols=91  Identities=22%  Similarity=0.314  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy1135          33 LNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFL  112 (124)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~  112 (124)
                      ........+++.+++++|++||+++++++.++|++|++.|+|++|||++|++++++.+|+.+.....+.|.+|...|++.
T Consensus       179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  258 (514)
T 3sn6_R          179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW  258 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhH
Confidence            44566778899999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .++..++..+|
T Consensus       259 ~~l~~~~~~~S  269 (514)
T 3sn6_R          259 TSIDVLCVTAS  269 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98877766554

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.64  E-value=5.5e-16  Score=116.63  Aligned_cols=86  Identities=12%  Similarity=0.126  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhh
Q psy1135          37 VFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPMLQ  116 (124)
Q Consensus        37 ~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~~  116 (124)
                      .+..++|.+++++|++||++|++++.+++++|+++|+|+.|||++|++++++..|..+.. ..+.|.++...|++..++.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~~  142 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSM  142 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHHH
Confidence            678899999999999999999999999999999999999999999999999888887665 5668999999999998888


Q ss_pred             hhhhccc
Q psy1135         117 LIPFRIY  123 (124)
Q Consensus       117 ~~~~~~S  123 (124)
                      .+++++|
T Consensus       143 ~~~~~~S  149 (520)
T 3v2y_A          143 FVALSAS  149 (520)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.64  E-value=4.4e-16  Score=115.09  Aligned_cols=91  Identities=23%  Similarity=0.390  Sum_probs=78.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccccccc
Q psy1135          32 LLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQ-NWTWGSFLCY  110 (124)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~-~w~~g~~~C~  110 (124)
                      ....+.+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|+++++ .+|+.+.....+ .|.+|...|+
T Consensus        16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~~~~~~~~~C~   94 (484)
T 3vw7_A           16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGSDWQFGSELCR   94 (484)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTSCCCSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccchhHHh
Confidence            34566788899999999999999999999999999999999999999999999865 566666666554 8999999999


Q ss_pred             ccchhhhhhhccc
Q psy1135         111 FLPMLQLIPFRIY  123 (124)
Q Consensus       111 ~~~~~~~~~~~~S  123 (124)
                      +..++..++.++|
T Consensus        95 ~~~~~~~~~~~~S  107 (484)
T 3vw7_A           95 FVTAAFYCNMYAS  107 (484)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887776654

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.64  E-value=6.4e-16  Score=113.05  Aligned_cols=92  Identities=12%  Similarity=0.243  Sum_probs=79.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy1135          30 PTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLC  109 (124)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C  109 (124)
                      ........+..+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|+.+...  ..|.+|...|
T Consensus        25 ~~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C  102 (447)
T 4eiy_A           25 APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGC  102 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHH
Confidence            33445666788999999999999999999999999999999999999999999999999999877643  3677899999


Q ss_pred             cccchhhhhhhccc
Q psy1135         110 YFLPMLQLIPFRIY  123 (124)
Q Consensus       110 ~~~~~~~~~~~~~S  123 (124)
                      ++..++..++.++|
T Consensus       103 ~~~~~~~~~~~~~S  116 (447)
T 4eiy_A          103 LFIACFVLVLTQSS  116 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998877766554

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.63  E-value=4e-16  Score=115.15  Aligned_cols=87  Identities=13%  Similarity=0.262  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccch
Q psy1135          35 VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNWTWGSFLCYFLPM  114 (124)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~  114 (124)
                      ...+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+...  ..|.+|...|++..+
T Consensus        20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~   97 (488)
T 3eml_A           20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIAC   97 (488)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999877643  378889999999999


Q ss_pred             hhhhhhccc
Q psy1135         115 LQLIPFRIY  123 (124)
Q Consensus       115 ~~~~~~~~S  123 (124)
                      +..++.++|
T Consensus        98 ~~~~~~~~s  106 (488)
T 3eml_A           98 FVLVLTQSS  106 (488)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877776554

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.62  E-value=9.7e-16  Score=112.81  Aligned_cols=90  Identities=19%  Similarity=0.320  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccccc
Q psy1135          34 NVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFV-LPITLMVTLVQNWTWGSFLCYFL  112 (124)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~-~p~~~~~~~~~~w~~g~~~C~~~  112 (124)
                      .......+++.+++++|++||+++++++.|+|++|++.|++++|||++|++.+++. +|+.+.....+.|.+|...|++.
T Consensus        32 ~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~  111 (448)
T 2z73_A           32 AVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVY  111 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHH
Confidence            45567778999999999999999999999999999999999999999999988775 89988888888999999999999


Q ss_pred             chhhhhhhccc
Q psy1135         113 PMLQLIPFRIY  123 (124)
Q Consensus       113 ~~~~~~~~~~S  123 (124)
                      .++..++..+|
T Consensus       112 ~~~~~~~~~~S  122 (448)
T 2z73_A          112 GFIGGIFGFMS  122 (448)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88777665544

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.52  E-value=4.2e-06  Score=45.93  Aligned_cols=31  Identities=13%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q psy1135          38 FFIILYGVTILSGVALNIFAIYHIIVERLFR   68 (124)
Q Consensus        38 ~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~   68 (124)
                      +.+++|++++++|++||++|++++.++|--+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            7789999999999999999999888877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	4e-04

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 14/80 (17%), Positives = 28/80 (35%)

Query: 35  VYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITL 94
            +        + I+ G  +N   +Y  +  +  R       +N+A+AD+         TL
Sbjct: 36  QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL 95

Query: 95  MVTLVQNWTWGSFLCYFLPM 114
             +L   + +G   C     
Sbjct: 96  YTSLHGYFVFGPTGCNLEGF 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.73

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=5.9e-18  Score=118.76  Aligned_cols=100  Identities=17%  Similarity=0.263  Sum_probs=85.8

Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1135          23 FTKPHIKPTLLNVYVFFIILYGVTILSGVALNIFAIYHIIVERLFRDATCGYFINIALADIIKCMFVLPITLMVTLVQNW  102 (124)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~i~~~~~l~~~~~~~l~nLa~aDl~~~~~~~p~~~~~~~~~~w  102 (124)
                      ++.+..+..++..+.+..+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....+.|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~  103 (348)
T d1u19a_          24 FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYF  103 (348)
T ss_dssp             TTSCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSC
T ss_pred             CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCcc
Confidence            34444445555567788899999999999999999999999999999999999999999999999999999888888889


Q ss_pred             ccccccccccchhhhhhhcc
Q psy1135         103 TWGSFLCYFLPMLQLIPFRI  122 (124)
Q Consensus       103 ~~g~~~C~~~~~~~~~~~~~  122 (124)
                      ..+...|+...+....+..+
T Consensus       104 ~~~~~~c~~~~~~~~~~~~~  123 (348)
T d1u19a_         104 VFGPTGCNLEGFFATLGGEI  123 (348)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhhhhhhhccccceee
Confidence            99999999998877666544