Psyllid ID: psy11395
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | 2.2.26 [Sep-21-2011] | |||||||
| P40806 | 5043 | Polyketide synthase PksJ | yes | N/A | 0.722 | 0.118 | 0.397 | 1e-126 | |
| O31782 | 5488 | Polyketide synthase PksN | no | N/A | 0.696 | 0.105 | 0.413 | 1e-125 | |
| Q05470 | 4538 | Polyketide synthase PksL | no | N/A | 0.700 | 0.128 | 0.400 | 1e-121 | |
| P40872 | 4262 | Polyketide synthase PksM | no | N/A | 0.694 | 0.135 | 0.397 | 1e-120 | |
| Q9R9J1 | 3971 | Mycosubtilin synthase sub | no | N/A | 0.772 | 0.161 | 0.357 | 1e-102 | |
| Q7TXM0 | 1876 | Phthiocerol/phenolphthioc | yes | N/A | 0.589 | 0.261 | 0.382 | 3e-99 | |
| O31784 | 2543 | Polyketide synthase PksR | no | N/A | 0.812 | 0.265 | 0.326 | 5e-99 | |
| P96202 | 2188 | Phthiocerol synthesis pol | yes | N/A | 0.595 | 0.226 | 0.392 | 1e-98 | |
| Q7TXL8 | 2188 | Phthiocerol/phenolphthioc | no | N/A | 0.595 | 0.226 | 0.392 | 1e-98 | |
| Q10977 | 1876 | Phthiocerol synthesis pol | no | N/A | 0.589 | 0.261 | 0.382 | 2e-98 |
| >sp|P40806|PKSJ_BACSU Polyketide synthase PksJ OS=Bacillus subtilis (strain 168) GN=pksJ PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Composition-based stats.
Identities = 255/642 (39%), Positives = 382/642 (59%), Gaps = 42/642 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEI---DIKNKHKGINFG 71
+AI+G++ P ++ + +FWK L++G I E+ + RW W D I +G
Sbjct: 3342 VAIVGISGRFPGAMD-IDEFWKNLEEGKDSITEVPKDRWDWREHYGNPDTDVNKTDIKWG 3400
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGA 131
F+ + FD FF ISP EA+ +DPQQR+L+ WK +EDAG LSG+ TG+FIG
Sbjct: 3401 GFIDGVAEFDPLFFGISPREADYVDPQQRLLMTYVWKALEDAGCSPQSLSGTGTGIFIGT 3460
Query: 132 SGSDYTRLLSDYIKIPVNAHHCIGNSM-AVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
+ Y L +P+ H G+ + +V NR+SYF N GPS ++TACSSSLVA+H
Sbjct: 3461 GNTGYKDLFHR-ANLPIEGHAATGHMIPSVGPNRMSYFLNIHGPSEPVETACSSSLVAIH 3519
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250
A+ +++NG+ A+ GG+N IL I+Y KAGMLS DG CKTF +A+GYVRGEG
Sbjct: 3520 RAVTAMQNGDCEMAIAGGVNTILTEEAHISYSKAGMLSTDGRCKTFSADANGYVRGEGVG 3579
Query: 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310
M+MLK L A D ++IY +I+G+A H G++N LT+PNP Q+ LL +A+ +++ID +
Sbjct: 3580 MVMLKKLEDAERDGNHIYGVIRGTAENHGGRANTLTSPNPKAQADLLVRAYRQADIDPST 3639
Query: 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFY--EKCGLGSVKTNLGHLEAA 368
+ YIE HGTGT+LGDPIEI GLK AF + + + +CG+GSVK+N+GHLE A
Sbjct: 3640 VTYIEAHGTGTELGDPIEINGLKAAFKELSNMRGESQPDVPDHRCGIGSVKSNIGHLELA 3699
Query: 369 SGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDW--VKPKYENKL-R 425
+GI+G++K++L +K+K L SL+ LN ++L DS YI+ Q+W V + N+L R
Sbjct: 3700 AGISGLIKVLLQMKHKTLVKSLHCETLNPYLQLTDSPFYIVQEKQEWKSVTDRDGNELPR 3759
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYV 485
AG+SSFG GG NAH+V+ EY + N++ + P + VLSAK KS+L+
Sbjct: 3760 RAGISSFGIGGVNAHIVIEEYMPKANSE--------HTATEQPNVIVLSAKNKSRLIDRA 3811
Query: 486 KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
+ +E + NK+ + L + LQ GR+ M+ RLA V +L +L F + K
Sbjct: 3812 SQLLEVIRNKKYTDQDLHRIAYTLQVGREEMDERLACVAGTMQELEEKLQAFVDGK---- 3867
Query: 546 QDKLDSF-------NESKNKI-----DIATVINLAIKEKNFKKIAILWQSGININWSLI- 592
++ D F N+ I D+A ++ I+++ + K+A LW G++I W+ +
Sbjct: 3868 -EETDEFFRGQSHRNKETQTIFTADEDMALALDAWIRKRKYAKLADLWVKGVSIQWNTLY 3926
Query: 593 -DKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNS 633
+ K ISLP+YPF+K +YW+P K+ S D ++ N+
Sbjct: 3927 GETKPRLISLPSYPFAKDHYWVPA----KEHSERDKKELVNA 3964
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Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O31782|PKSN_BACSU Polyketide synthase PksN OS=Bacillus subtilis (strain 168) GN=pksN PE=1 SV=3 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Composition-based stats.
Identities = 258/624 (41%), Positives = 368/624 (58%), Gaps = 45/624 (7%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIW-------PLEIDIKNKHKG 67
IAI+G++ P + +W ILK+G + E+ + RW W E++ N
Sbjct: 2579 IAIVGISGIFPMA-KDVEAYWNILKEGKDCMTEIPKDRWDWREYEGDPAKEVNKTN---- 2633
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
+ +G F+ I FD FF ISP EAE M+PQQR+LL +WK IEDAGY + +LSG+ TGV
Sbjct: 2634 VKWGGFIDGIADFDPLFFGISPREAEQMEPQQRLLLTYAWKAIEDAGYSAKRLSGTKTGV 2693
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
FIG + Y+ LLS + S +V NR+SYF N GPS +DTACSSSLV
Sbjct: 2694 FIGTGNTGYSSLLSK-ANSAIEGSAAANTSPSVGPNRVSYFLNLHGPSEPVDTACSSSLV 2752
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247
A+H A+ SI+ G AL GG+N I+ P I++ KAG LS++G CKTF ADG+ GE
Sbjct: 2753 AIHHAISSIEEGTCDMALAGGVNTIILPEVYISFDKAGALSKEGKCKTFSNQADGFAHGE 2812
Query: 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307
GA +L LK L A D+IY +IKGSAI H G++ LT PNP Q+ ++Q A+ ++ ID
Sbjct: 2813 GAGILFLKKLKAAEEAGDHIYGVIKGSAINHGGRAASLTTPNPKAQADVIQSAYQKAGID 2872
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSI-ITYKKNIKNFYEKCGLGSVKTNLGHLE 366
+++ YIE HGTGT+LGDP+EI GLK+AF ++ + N Y CGLGSVKTN+GHL
Sbjct: 2873 PKTVTYIEAHGTGTELGDPVEINGLKSAFKALGVNEGDTSANPY--CGLGSVKTNIGHLS 2930
Query: 367 AASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKL-- 424
A+G G++KI+L LK+K L SL+ N+N I+L +S YI+ ++W K E
Sbjct: 2931 LAAGAAGVIKILLQLKHKTLVKSLHCENVNPYIQLKNSPFYIVRETEEWKALKNEQGEEL 2990
Query: 425 -RIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLI 483
R AGVSSFG GG NAHV++ EY E +++ I +I+ P IFVLSAK +++L
Sbjct: 2991 PRRAGVSSFGIGGVNAHVIIEEYIPEASDENIPSIAPEH-----PGIFVLSAKNEARLKE 3045
Query: 484 YVKKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKII 543
+ ++ + L+ + +++L + LQ GR AM RL ++ + +DL +L F +K
Sbjct: 3046 HAQQLADALDKQTYSDVNLARIAYTLQAGRDAMEERLGIISGSIEDLQKKLKDFAAEK-- 3103
Query: 544 PMQDKLDSFNESKNKIDIATVINLAIKEK------------NFKKIAILWQSGININWSL 591
D F K +ID T+ L E+ + K+ LW G++++W+
Sbjct: 3104 --SGVEDVF---KGRIDKGTLQMLTEDEEIQEAVEKWMERGKYAKLLELWVKGLDVDWTK 3158
Query: 592 IDKKNI--RISLPTYPFSKYYYWL 613
+ +N+ RISLPTYPF+K YW+
Sbjct: 3159 LYGENLPKRISLPTYPFAKDRYWI 3182
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Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q05470|PKSL_BACSU Polyketide synthase PksL OS=Bacillus subtilis (strain 168) GN=pksL PE=1 SV=3 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats.
Identities = 249/621 (40%), Positives = 364/621 (58%), Gaps = 39/621 (6%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWP-LEIDIKNKHKGIN-FG 71
DIAIIGLA PK N + +FW LK+G + E+ ESRW W LE K I+ +G
Sbjct: 435 DIAIIGLAGRYPKAAN-IHEFWNNLKEGKDCVSEIPESRWDWQRLEGITSPSGKDISKWG 493
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLS---GSN---- 124
F+ D +CFD FF+I+P EAE+MDPQ+R+ LE W+TIEDAGY L+ G N
Sbjct: 494 GFIDDPDCFDPQFFRITPREAETMDPQERLFLETCWETIEDAGYTPKTLAKPKGRNKRQH 553
Query: 125 TGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSM--AVLANRISYFYNFTGPSLLIDTAC 182
GVF G DYT + ++ +A + S+ A +ANR+SYF NF GPS+ +DT C
Sbjct: 554 VGVFAGVMHKDYTLVGAE----EASAENVFPLSLNYAQIANRVSYFCNFHGPSMAVDTVC 609
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242
SSSL AVH AL+SI++GE AL GG+NL LHP+ + Y M S DG C+TF K+ DG
Sbjct: 610 SSSLTAVHLALESIRHGECDVALAGGVNLSLHPNKYMTYGVWDMFSTDGHCRTFGKDGDG 669
Query: 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWN 302
YV EG ++LKPL A D D IYA+IKGSA+ H G +G++ P+P+ Q+ L++
Sbjct: 670 YVPAEGIGAVLLKPLRQAEEDGDRIYAVIKGSAVNHVGTVSGISVPSPVSQADLIETCLE 729
Query: 303 ESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNL 362
++ ID R++ Y+E HGTGT LGDPIEIQGL AF Y ++ + F C +GSVK+N+
Sbjct: 730 KTGIDPRTISYVEAHGTGTSLGDPIEIQGLVKAFRQ---YTQD-RQF---CSIGSVKSNI 782
Query: 363 GHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN 422
GH E+A+GI+G+ K+ L L ++KL SL+ LN + + S Y+ + W +P +
Sbjct: 783 GHAESAAGISGLSKVALQLHHQKLVPSLHSEELNPYVDFEKSPFYVQHETETWKQPVIKE 842
Query: 423 K------LRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAK 476
R AG+SSFG+ G+NAH++L E+ I ++S++ +S + + LSA+
Sbjct: 843 NGEDVPYPRRAGISSFGATGSNAHIILEEH---IPQAAEQDVSLS-SDSDISAVIPLSAR 898
Query: 477 TKSQLLIYVKKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNF 536
+ +L +Y K+ +++L++ I +RDL LQ GR+ M R++ + +L QL
Sbjct: 899 NQERLRVYAKRLLDFLHD----GIQIRDLAYTLQVGREPMEERVSFLASGIQELSDQLKA 954
Query: 537 FYEKKIIPMQDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGININWSLI--DK 594
F E + + A ++ ++++ +IA W +G ++W L+
Sbjct: 955 FIEGRKAIQHCWKGRVSRGSEPSRPAESVHKLLEQRKLDQIAEQWANGSGVDWKLLYEGS 1014
Query: 595 KNIRISLPTYPFSKYYYWLPK 615
K RISLPTYPF + YW+PK
Sbjct: 1015 KPKRISLPTYPFERVRYWVPK 1035
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Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P40872|PKSM_BACSU Polyketide synthase PksM OS=Bacillus subtilis (strain 168) GN=pksM PE=1 SV=4 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats.
Identities = 250/629 (39%), Positives = 374/629 (59%), Gaps = 52/629 (8%)
Query: 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG--- 67
+ +DIAIIG+A PK N + +FW+ LK G+ I E+ SRW W E D + G
Sbjct: 392 IGEDIAIIGMAGRYPKAKN-IQEFWEQLKAGTDCITEIPNSRWEWK-ESDGLDSPAGKPL 449
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLS---GSN 124
+G F+++ +CFD FF+ISP EAE MDPQ+R+ LE W+ IEDAGY ++ G N
Sbjct: 450 SKWGGFIEEADCFDPQFFRISPREAEMMDPQERLFLETCWEAIEDAGYTPETIASPQGEN 509
Query: 125 ----TGVFIGASGSDYTRL----LSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSL 176
GVF G DY+ + LS++ P++ ++ A +ANR+SY+ NF GPS+
Sbjct: 510 KRQHVGVFAGVMHKDYSLIGAEALSEHNPFPLSLNY------AQIANRVSYYCNFHGPSM 563
Query: 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTF 236
+DT CSSSL AVH A++SI+NGE AL GG+NL LHP+ I+Y GM S DG C TF
Sbjct: 564 AVDTVCSSSLTAVHLAIESIRNGECEAALAGGVNLSLHPAKYISYGSVGMHSSDGYCHTF 623
Query: 237 DKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL 296
K DGYV GEG ++LKPL A D D IYA+IKGSAI H G+ +G+T P+P+ Q+ +
Sbjct: 624 GKGGDGYVSGEGVGTVLLKPLRKAEQDGDRIYAVIKGSAINHVGKVSGITVPSPVAQADV 683
Query: 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG 356
++ ++ ID R++ Y+E HGTGT LGDPIE+QGL AF +N ++ + C +G
Sbjct: 684 IEACLEKTGIDPRTISYVEAHGTGTSLGDPIEVQGLVKAF------SRNTQD-KQFCSIG 736
Query: 357 SVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416
SVK+N+GH EAA+GI+G+ K +L L +K L SL+ LN +KLD + ++ ++W
Sbjct: 737 SVKSNIGHAEAAAGISGLTKTVLQLHHKTLVPSLHSEELNPYLKLDQTPFFVQHETKEWE 796
Query: 417 KPKY-ENKL-----RIAGVSSFGSGGTNAHVVLSEY-NIEINNKIINNISINFENSTLPL 469
+P + EN + R AG+SSFG+ G+NAH++L EY E +++ I ++ N E +
Sbjct: 797 QPSFTENGVDVTYPRRAGLSSFGASGSNAHLILEEYIPAESHSETI--LTKNEE-----I 849
Query: 470 IFVLSAKTKSQLLIYVKKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDD 529
+ LSA+ K +L Y K +++L S +++L L +Q GR M R A ++ + D
Sbjct: 850 VIPLSARNKDRLQAYALKLLDFL----SEDVNLLALAYTMQAGRVEMEERAAFIVKDIKD 905
Query: 530 LLSQLNFFY--EKKIIPM-QDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGIN 586
L ++L F E++I + E+ + + N I++ ++A W G
Sbjct: 906 LTAKLRAFANGEEEIEGCWTGRAKENQEAAGLASVNALNNNLIRDSEMMEMAKAWVQGKR 965
Query: 587 INWSLI--DKKNIRISLPTYPFSKYYYWL 613
+ W + D+K ++IS+PTYPF++ YW+
Sbjct: 966 VTWDDLYGDRKPLKISVPTYPFARERYWI 994
|
Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q9R9J1|MYCA_BACIU Mycosubtilin synthase subunit A OS=Bacillus subtilis GN=mycA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Composition-based stats.
Identities = 258/721 (35%), Positives = 373/721 (51%), Gaps = 79/721 (10%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEI--DIKNKHKGIN 69
+KDIAIIG++ +P G + S FW +L+ G I E R ++ IK++
Sbjct: 669 SKDIAIIGMSLNVP-GASNKSDFWHLLENGEHGIREYPAPRVKDAIDYLRSIKSERNEKQ 727
Query: 70 F--GAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
F G +L +I+ FD FF ++P A+ MDP QR+ L+ +W IEDAGY +SGS GV
Sbjct: 728 FVRGGYLDEIDRFDYSFFGLAPKTAKFMDPNQRLFLQSAWHAIEDAGYAGDTISGSQLGV 787
Query: 128 FIGAS--GSDYTRLLSDYIKIPVNAHHCI-GNSMAVLANRISYFYNFTGPSLLIDTACSS 184
++G S G DY RLLS P HH I GN +VLA+RI+YF N GP++ +DTACSS
Sbjct: 788 YVGYSKVGYDYERLLS--ANYPEELHHYIVGNLPSVLASRIAYFLNLKGPAVTVDTACSS 845
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYV 244
SLVAVH A +++ G+ AL GGI L P M S DG+ KTF K++DG
Sbjct: 846 SLVAVHMACKALLTGDCEMALAGGIRTSLLPMRI----GLDMESSDGLTKTFSKDSDGTG 901
Query: 245 RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNES 304
GEG ++LKPL A+ D D+IY +IKGSAI +G + G+TAP+P Q+ +++ AW ++
Sbjct: 902 SGEGVAAVLLKPLQAAIRDGDHIYGVIKGSAINQDGTTVGITAPSPAAQTEVIEMAWKDA 961
Query: 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGH 364
I +L +IE HGTGTKLGDP+E GL AF +T KK C +GSVK N+GH
Sbjct: 962 GIAPETLSFIEAHGTGTKLGDPVEFNGLCKAFEK-VTEKKQF------CAIGSVKANIGH 1014
Query: 365 LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKL 424
L A+GI G++K L L +KK+P +F N I S Y+ + D+ E++
Sbjct: 1015 LFEAAGIVGLIKSALMLNHKKIPPLAHFNKPNPLIPFHSSPFYVNQEVMDFTP---EDRP 1071
Query: 425 RIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIY 484
G+SSFG GTNAHVVL EY E E+ P +FVLSA T++ L
Sbjct: 1072 LRGGISSFGFSGTNAHVVLEEYTPESEYAP--------EDGNDPHLFVLSAHTEASLYEL 1123
Query: 485 VKKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDL-------------L 531
+Y +++++ SLR + GR ++ LA+++ + +L L
Sbjct: 1124 THQYRQYISDDS--QSSLRSICYTASTGRAHLDYCLAMIVSSNQELIDKLTSLIQGERNL 1181
Query: 532 SQLNFFYEKKIIPMQDKLDSFNESKNKIDIATVINLAIKEKN--FKKIAILWQSGININW 589
Q++F Y K I MQ + N SK D+ E+ +IA L+ I+W
Sbjct: 1182 PQVHFGY-KNIKEMQPA-EKDNLSKQISDLMQHRPCTKDERITWLNRIAELYVQRAVIDW 1239
Query: 590 SLIDKKNI--RISLPTYPFSKYYYW------------------LPKNNLNKKISNSDDTQ 629
+ + + LP YPF + W L N+ I + T
Sbjct: 1240 RAVYSNEVVQKTPLPLYPFERNRCWVEAVYESAKERKEKGEVALDINHTKTHIESFLKTV 1299
Query: 630 ISNSDDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTL 689
ISN+ I++++ D +A FI GLDSI+ + I + ++ I + +D T+
Sbjct: 1300 ISNASG------IRADEIDSNAHFIGFGLDSIMLTQVKKAIADEFNVDIPMERFFD--TM 1351
Query: 690 N 690
N
Sbjct: 1352 N 1352
|
This protein is a multifunctional enzyme, able to activate a long chain fatty acid and link it with the amino acid Asn as part of the synthesis of mycosubtilin. The activation sites consist of individual domains. Bacillus subtilis (taxid: 1423) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q7TXM0|PPSA_MYCBO Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ppsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 199/520 (38%), Positives = 296/520 (56%), Gaps = 30/520 (5%)
Query: 3 INNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIK 62
+ + N+L++ IA++G+ C P GI+ W L + S I ++ RW P E
Sbjct: 92 VKRGARNSLDEPIAVVGMGCRFPGGISCPEALWDFLCERRSSISQVPPQRW-QPFEGGPP 150
Query: 63 NKHKGI----NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSS 118
+ +G+FL DI+ FDA FF+ISP EA+ MDPQQR+LLE++W+ +E AG
Sbjct: 151 EVAAALARTTRWGSFLPDIDAFDAEFFEISPSEADKMDPQQRLLLEVAWEALEHAGIPPG 210
Query: 119 KLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178
L S TGVF GA S+Y + S + V+ G +M+++ANR+SYF + GPS+ +
Sbjct: 211 TLRRSATGVFAGACLSEYGAMASADLSQ-VDGWSNSGGAMSIIANRLSYFLDLRGPSVAV 269
Query: 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDK 238
DTACSSSLVA+H A QS++ + A+ G+NL+L P+ + + G LS G C+ FD
Sbjct: 270 DTACSSSLVAIHLACQSLRTQDCHLAIAAGVNLLLSPAVFRGFDQVGALSPTGQCRAFDA 329
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298
ADG+VRGEGA +++LK L+ A D D + A+I GSA+T +G+SNGL APNP Q +L+
Sbjct: 330 TADGFVRGEGAGVVVLKRLTDAQRDGDRVLAVICGSAVTQDGRSNGLMAPNPAAQMAVLR 389
Query: 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL--G 356
A+ + + + Y+E HGTGT LGDPIE + L + E L G
Sbjct: 390 AAYTNAGMQPSEVDYVEAHGTGTLLGDPIEARALGTVLG---------RGRPEDSPLLIG 440
Query: 357 SVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416
SVKTNLGH EAA+GI G +K +L +++ ++P + +F N +I D + ++D +W
Sbjct: 441 SVKTNLGHTEAAAGIAGFIKTVLAVQHGQIPPNQHFETANPHIPFTDLRMKVVDTQTEWP 500
Query: 417 KPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAK 476
+ + AGVSSFG GGTNAHVV+ E E+ +S STL V++ K
Sbjct: 501 ATGHPRR---AGVSSFGFGGTNAHVVI-EQGQEVRPAPGQGLSPAV--STL----VVAGK 550
Query: 477 TKSQLLIYVKKYIEWLNNKESLNISLRDL--TLQLQKGRQ 514
T ++ +W+ + +++L D+ TL + RQ
Sbjct: 551 TMQRVSATAGMLADWMEGPGA-DVALADVAHTLNHHRSRQ 589
|
Involved in the elongation of either C22-24 fatty acids or p-hydroxyphenylalkanoic acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol and phenolphthiocerol derivatives, respectively. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O31784|PKSR_BACSU Polyketide synthase PksR OS=Bacillus subtilis (strain 168) GN=pksR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 5e-99, Method: Composition-based stats.
Identities = 239/731 (32%), Positives = 381/731 (52%), Gaps = 56/731 (7%)
Query: 5 NNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIW-PLEIDIKN 63
+ +I + IAIIG++ PK N++++FW L +G + + E+ + RW W K
Sbjct: 1521 DKTIEHAADGIAIIGMSGQFPKA-NSVTEFWDNLVQGKNCVSEVPKERWDWRKYAAADKE 1579
Query: 64 KHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGS 123
+ +G F++ I FD FF ISP EA +MDPQ+ +LL +WK +EDAG LS
Sbjct: 1580 GQSSLQWGGFIEGIGEFDPLFFGISPKEAANMDPQEFLLLIHAWKAMEDAGLTGQVLSSR 1639
Query: 124 NTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACS 183
TGVF+ A +D + S ++ NRISY + GPS + ACS
Sbjct: 1640 PTGVFVAAGNTDTAVVPS------------------LIPNRISYALDVKGPSEYYEAACS 1681
Query: 184 SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243
S+LVA+H A+QSI+NGE QA+VG +NL+L P I + G LS G K+F +A+G+
Sbjct: 1682 SALVALHRAIQSIRNGECEQAIVGAVNLLLSPKGFIGFDSMGYLSEKGQAKSFQADANGF 1741
Query: 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303
VR EGA +L++KPL A+ D D+IY++IKGS ++H G+ L APNP + KA+
Sbjct: 1742 VRSEGAGVLIIKPLQKAIEDSDHIYSVIKGSGVSHGGRGMSLHAPNPAGMKDAMLKAYQG 1801
Query: 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSI-ITYKKNIKNFYEKCGLGSVKTNL 362
+ ID +++ YIE HG + L D IEI+ LK+ + + + ++ C + S+K ++
Sbjct: 1802 AQIDPKTVTYIEAHGIASPLADAIEIEALKSGCSQLELELPQEVRE-EAPCYISSLKPSI 1860
Query: 363 GHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN 422
GH E SG+ ++K+ + +K++ +P F +LN + L + + Q W +
Sbjct: 1861 GHGELVSGMAALMKVSMAMKHQTIPGISGFSSLNDQVSLKGTRFRVTAENQQWRDLSDDA 1920
Query: 423 KLRI---AGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKS 479
+I A ++S+ GG NAHV+L EY I + + ++S N + I VLSAK +
Sbjct: 1921 GKKIPRRASINSYSFGGVNAHVILEEY-IPLPKPPV-SMSENGAH-----IVVLSAKNQD 1973
Query: 480 QLLIYVKKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYE 539
+L ++ ++++N ++ L SL+D LQ GR+ M RLALV+ ++++L+ L
Sbjct: 1974 RLKAIAQQQLDYVNKQQEL--SLQDYAYTLQTGREEMEDRLALVVRSKEELVIGLQACLA 2031
Query: 540 KKIIPMQDKLDSF--NESKNKIDIAT---------VINLAIKEKNFKKIAILWQSGININ 588
+K ++ + F N D+ VI + E N +KIA W G+ I
Sbjct: 2032 EKGDKLKSSVPVFSGNAENGSSDLEALLDGPLREMVIETLLSENNLEKIAFCWTKGVQIP 2091
Query: 589 WSLI--DKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQI---KLQIK 643
W + K RI LPTYPF K W + S S D +I+NS D I L +
Sbjct: 2092 WEKLYQGKGARRIPLPTYPFEKRSCWNGFQAVENTPSVSQDERINNSSDHHILANVLGMA 2151
Query: 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISKK 703
++ G DSI + ++++ S++D I T++ T+ +M I+K
Sbjct: 2152 PDELQFHKPLQQYGFDSISCIQLLQQLQSKVDPLIVLTELQACHTVQD----MMDLIAK- 2206
Query: 704 LKSKNLSINND 714
K ++ S+ ND
Sbjct: 2207 -KQEDTSLQND 2216
|
Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|P96202|PPSC_MYCTU Phthiocerol synthesis polyketide synthase type I PpsC OS=Mycobacterium tuberculosis GN=ppsC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/522 (39%), Positives = 289/522 (55%), Gaps = 27/522 (5%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--- 68
++ IA+IG+ C P G+N +FW +L G S I + RW + G
Sbjct: 34 SEPIAVIGMGCRFPGGVNNPEQFWDLLCAGRSGIVRVPAQRWDADAYYCDDHTVPGTICS 93
Query: 69 NFGAFLKDIEC--FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTG 126
G FL + FDA FF ISP EA +MDPQQR+L+E++W+ +EDAG + G+ T
Sbjct: 94 TEGGFLTSWQPDEFDAEFFSISPREAAAMDPQQRLLIEVAWEALEDAGVPQHTIRGTQTS 153
Query: 127 VFIGASGSDYTRLLSDYIK-IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
VF+G + DY L+ ++ + ++A+ GNS A R++Y GP+++IDTACSSS
Sbjct: 154 VFVGVTAYDYMLTLAGRLRPVDLDAYIPTGNSANFAAGRLAYILGARGPAVVIDTACSSS 213
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH A QS++ ES ALVGG NL+L P +IA + GMLS +G CKTFD +ADGYVR
Sbjct: 214 LVAVHLACQSLRGRESDMALVGGTNLLLSPGPSIACSRWGMLSPEGRCKTFDASADGYVR 273
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEGA +++LK L A+ D + I A+++GSA+ +G S+G+T PN Q LL KA S
Sbjct: 274 GEGAAVVVLKRLDDAVRDGNRILAVVRGSAVNQDGASSGVTVPNGPAQQALLAKALTSSK 333
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
+ + Y+E HGTGT LGDPIE+ L F + ++ +GSVKTNLGHL
Sbjct: 334 LTAADIDYVEAHGTGTPLGDPIELDSLSKVFSD--------RAGSDQLVIGSVKTNLGHL 385
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+G+ G++K +L + N +P LNF+ L + S L I DW + R
Sbjct: 386 EAAAGVAGLMKAVLAVHNGYIPRHLNFHQLTPHASEAASRLRIAADGIDW---PTTGRPR 442
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLI--FVLSAKTKSQLLI 483
AGVSSFG GTNAHVV IE + + +P + V+ KT ++
Sbjct: 443 RAGVSSFGVSGTNAHVV-----IEQAPDPMAAAGTEPQRGPVPAVSTLVVFGKTAPRVAA 497
Query: 484 YVKKYIEWLNNKESLNISLRDL--TLQLQKGRQAMNCRLALV 523
+WL+ + + L D+ TL + RQ +A V
Sbjct: 498 TASVLADWLDGPGA-AVPLADVAHTLNHHRARQTRFGTVAAV 538
|
Involved in the elongation of either C22-24 fatty acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol derivatives. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q7TXL8|PPSC_MYCBO Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsC OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ppsC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/522 (39%), Positives = 289/522 (55%), Gaps = 27/522 (5%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--- 68
++ IA+IG+ C P G+N +FW +L G S I + RW + G
Sbjct: 34 SEPIAVIGMGCRFPGGVNNPEQFWDLLCAGRSGIVRVPAQRWDADAYYCDDHTVPGTICS 93
Query: 69 NFGAFLKDIEC--FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTG 126
G FL + FDA FF ISP EA +MDPQQR+L+E++W+ +EDAG + G+ T
Sbjct: 94 TEGGFLTSWQPDEFDAEFFSISPREAAAMDPQQRLLIEVAWEALEDAGVPQHTIRGTQTS 153
Query: 127 VFIGASGSDYTRLLSDYIK-IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
VF+G + DY L+ ++ + ++A+ GNS A R++Y GP+++IDTACSSS
Sbjct: 154 VFVGVTAYDYMLTLAGRLRPVDLDAYIPTGNSANFAAGRLAYILGARGPAVVIDTACSSS 213
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH A QS++ ES ALVGG NL+L P +IA + GMLS +G CKTFD +ADGYVR
Sbjct: 214 LVAVHLACQSLRGRESDMALVGGTNLLLSPGPSIACSRWGMLSPEGRCKTFDASADGYVR 273
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEGA +++LK L A+ D + I A+++GSA+ +G S+G+T PN Q LL KA S
Sbjct: 274 GEGAAVVVLKRLDDAVRDGNRILAVVRGSAVNQDGASSGVTVPNGPAQQALLAKALTSSK 333
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
+ + Y+E HGTGT LGDPIE+ L F + ++ +GSVKTNLGHL
Sbjct: 334 LTAADIDYVEAHGTGTPLGDPIELDSLSKVFSD--------RAGSDQLVIGSVKTNLGHL 385
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+G+ G++K +L + N +P LNF+ L + S L I DW + R
Sbjct: 386 EAAAGVAGLMKAVLAVHNGYIPRHLNFHQLTPHASEAASRLRIAADGIDW---PTTGRPR 442
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLI--FVLSAKTKSQLLI 483
AGVSSFG GTNAHVV IE + + +P + V+ KT ++
Sbjct: 443 RAGVSSFGVSGTNAHVV-----IEQAPDPMAAAGTEPQRGPVPAVSTLVVFGKTAPRVAA 497
Query: 484 YVKKYIEWLNNKESLNISLRDL--TLQLQKGRQAMNCRLALV 523
+WL+ + + L D+ TL + RQ +A V
Sbjct: 498 TASVLADWLDGPGA-AVPLADVAHTLNHHRARQTRFGTVAAV 538
|
Involved in the elongation of either C22-24 fatty acids or p-hydroxyphenylalkanoic acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol and phenolphthiocerol derivatives, respectively. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q10977|PPSA_MYCTU Phthiocerol synthesis polyketide synthase type I PpsA OS=Mycobacterium tuberculosis GN=ppsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/520 (38%), Positives = 296/520 (56%), Gaps = 30/520 (5%)
Query: 3 INNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWI----WPLE 58
+ + N+L++ IA++G+ C P GI+ W L + S I ++ RW P E
Sbjct: 92 VKRGARNSLDEPIAVVGMGCRFPGGISCPEALWDFLCERRSSISQVPPQRWQPFEGGPPE 151
Query: 59 IDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSS 118
+ + +G+FL DI+ FDA FF+ISP EA+ MDPQQR+LLE++W+ +E AG
Sbjct: 152 V-AAALARTTRWGSFLPDIDAFDAEFFEISPSEADKMDPQQRLLLEVAWEALEHAGIPPG 210
Query: 119 KLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178
L S TGVF GA S+Y + S + V+ G +M+++ANR+SYF + GPS+ +
Sbjct: 211 TLRRSATGVFAGACLSEYGAMASADLSQ-VDGWSNSGGAMSIIANRLSYFLDLRGPSVAV 269
Query: 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDK 238
DTACSSSLVA+H A QS++ + A+ G+NL+L P+ + + G LS G C+ FD
Sbjct: 270 DTACSSSLVAIHLACQSLRTQDCHLAIAAGVNLLLSPAVFRGFDQVGALSPTGQCRAFDA 329
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298
ADG+VRGEGA +++LK L+ A D D + A+I GSA+ +G+SNGL APNP Q +L+
Sbjct: 330 TADGFVRGEGAGVVVLKRLTDAQRDGDRVLAVICGSAVNQDGRSNGLMAPNPAAQMAVLR 389
Query: 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL--G 356
A+ + + + Y+E HGTGT LGDPIE + L + E L G
Sbjct: 390 AAYTNAGMQPSEVDYVEAHGTGTLLGDPIEARALGTVLG---------RGRPEDSPLLIG 440
Query: 357 SVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416
SVKTNLGH EAA+GI G +K +L +++ ++P + +F N +I D + ++D +W
Sbjct: 441 SVKTNLGHTEAAAGIAGFIKTVLAVQHGQIPPNQHFETANPHIPFTDLRMKVVDTQTEWP 500
Query: 417 KPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAK 476
+ R AGVSSFG GGTNAHVV+ E E+ +S STL V++ K
Sbjct: 501 ATGHP---RRAGVSSFGFGGTNAHVVI-EQGQEVRPAPGQGLSPAV--STL----VVAGK 550
Query: 477 TKSQLLIYVKKYIEWLNNKESLNISLRDL--TLQLQKGRQ 514
T ++ +W+ + +++L D+ TL + RQ
Sbjct: 551 TMQRVSATAGMLADWMEGPGA-DVALADVAHTLNHHRSRQ 589
|
Involved in the elongation of either C22-24 fatty acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol derivatives. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | ||||||
| 38374225 | 4881 | putative type I polyketide synthase [sym | 0.702 | 0.119 | 0.540 | 0.0 | |
| 56553464 | 4376 | OnnB [symbiont bacterium of Theonella sw | 0.672 | 0.127 | 0.497 | 1e-169 | |
| 291191811 | 2239 | Bat1 [Pseudomonas fluorescens] | 0.719 | 0.267 | 0.456 | 1e-158 | |
| 339009655 | 2239 | putative polyketide synthase PksN [Brevi | 0.738 | 0.274 | 0.465 | 1e-156 | |
| 421875127 | 2210 | polyketide synthase PksN domain protein | 0.753 | 0.283 | 0.458 | 1e-155 | |
| 121597786 | 1798 | polyketide synthase [Burkholderia mallei | 0.694 | 0.320 | 0.453 | 1e-153 | |
| 67640421 | 1778 | polyketide synthase [Burkholderia mallei | 0.694 | 0.324 | 0.453 | 1e-153 | |
| 167922572 | 622 | polyketide synthase, type I [Burkholderi | 0.697 | 0.932 | 0.454 | 1e-152 | |
| 167914676 | 626 | OnnB [Burkholderia pseudomallei 112] | 0.697 | 0.926 | 0.452 | 1e-151 | |
| 167906350 | 625 | polyketide synthase, type I [Burkholderi | 0.697 | 0.928 | 0.452 | 1e-151 |
| >gi|38374225|gb|AAR19304.1| putative type I polyketide synthase [symbiont bacterium of Paederus fuscipes] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats.
Identities = 329/609 (54%), Positives = 442/609 (72%), Gaps = 25/609 (4%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
D+AI+G+AC LP G+++ + FW+ L++G+S+I +L RW WP +ID + HKGI G F
Sbjct: 359 DVAIVGMACRLPGGVDSPTAFWQCLQEGASLIGDLPVERWEWPDDIDPQRAHKGIARGGF 418
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
++D++ FDAPFF+ISP EA+SMDPQQR+LLEL W+TIE AGY L+G++TGVFIGASG
Sbjct: 419 IEDVKAFDAPFFRISPAEAQSMDPQQRMLLELCWQTIEHAGYAPDALAGTDTGVFIGASG 478
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
SDY RLL + + P++AH+ G+SMAVLANR+SYFY+FTGPSLL+DTACSSSLVAVH+A+
Sbjct: 479 SDYARLL-ERSESPLDAHYGTGSSMAVLANRLSYFYDFTGPSLLLDTACSSSLVAVHKAV 537
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
QSI GES QALVGG+NLILHP+N+IAYYKAGML++DG+CKTFD+ ADGYVRGEGAVML+
Sbjct: 538 QSIWAGESVQALVGGVNLILHPANSIAYYKAGMLAKDGLCKTFDQQADGYVRGEGAVMLL 597
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGY 313
LKPL+ AL D +YA+IKG+A H GQ+ GLT PNP +QS LL AW + ID LGY
Sbjct: 598 LKPLARALESRDRVYAVIKGTACNHGGQAGGLTVPNPERQSTLLCSAWQSAGIDPSDLGY 657
Query: 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITG 373
IE HGTGT LGDPIE++GLK+AF + + CGLGSVKTNLGHLEAA+GI G
Sbjct: 658 IEAHGTGTSLGDPIEVRGLKDAFAATRCGAG------QNCGLGSVKTNLGHLEAAAGIAG 711
Query: 374 ILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFG 433
+LK++LCL++++LPASL+F LN +I+L+ LY++D LQ W P ++R AGVSSFG
Sbjct: 712 LLKVVLCLQHRQLPASLHFQQLNAHIELERG-LYVVDRLQPWTPPS-SGRVRFAGVSSFG 769
Query: 434 SGGTNAHVVLSEY-NIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWL 492
SGG NAHVV++E +I + + + P +FVLSA T++QL Y + YI+WL
Sbjct: 770 SGGANAHVVVAEAPDIRVAPDGVAD--------RRPSVFVLSAGTQAQLRAYAQIYIDWL 821
Query: 493 NNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPMQDKLDSF 552
+ K N+ L L QLQ GR+AM RLALV+ + + LLS L F + + D S
Sbjct: 822 SAKGQDNLPLTHLVYQLQTGRKAMAHRLALVVDSYEALLSGLKAFCTRSESQVADTPAST 881
Query: 553 NESKNKIDIATVINLAIKEKNFKKIAILWQSGININWSLIDKKNI---RISLPTYPFSKY 609
++ I+ ++E +++IA LWQSG +++WSL+ + R++LPTYPF++
Sbjct: 882 RREASR----QYIHSLVEEGEWEQIAWLWQSGDDVDWSLLHDPRVPMPRVALPTYPFARQ 937
Query: 610 YYWLPKNNL 618
+YWLP++ +
Sbjct: 938 HYWLPESTM 946
|
Source: symbiont bacterium of Paederus fuscipes Species: symbiont bacterium of Paederus fuscipes Genus: Family: Order: Class: Phylum: Superkingdom: Bacteria |
| >gi|56553464|gb|AAV97870.1| OnnB [symbiont bacterium of Theonella swinhoei] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats.
Identities = 299/601 (49%), Positives = 397/601 (66%), Gaps = 42/601 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+GLAC LP GI T W++LK G S + L RW WP +ID N+H+GI+ G FL
Sbjct: 419 IAIVGLACRLPGGIETPQALWQLLKNGESAVGSLPSGRWNWPADIDPDNRHRGIDQGGFL 478
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA FF++S E ESMDPQQR+LLELSW+ +EDAGY L S TGVFIGASGS
Sbjct: 479 DDIAGFDAAFFRLSTTEVESMDPQQRMLLELSWQVLEDAGYAPKDLKKSQTGVFIGASGS 538
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY+ LL+ + V AH G++MAVLANRISYFY+F GPSL++DTACSSSLVAVH+A+Q
Sbjct: 539 DYSYLLNQS-PVSVEAHFGTGSAMAVLANRISYFYDFYGPSLVVDTACSSSLVAVHKAVQ 597
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S++ GE Q LVGG++++ HP+N++AYY+AGML++DG CKTFD+ A+GYVR EGAVML+L
Sbjct: 598 SLRVGECDQVLVGGVHVMCHPANSLAYYQAGMLAKDGKCKTFDQQANGYVRAEGAVMLLL 657
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
KPL A+ D D ++A+I+G++ H G ++GLT PNP QQ+ LLQ+AW ++ I L Y+
Sbjct: 658 KPLEAAVADQDQVFAVIRGTSCNHGGLASGLTVPNPEQQAALLQQAWRDARISPLELSYL 717
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT LGDPIEIQG+K+AF + + CGLGS+KTNLGHLEAA+GI G+
Sbjct: 718 EAHGTGTALGDPIEIQGMKDAFAGYVKARSLPVPEIRSCGLGSIKTNLGHLEAAAGIAGL 777
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK++L ++++LP L+F LN +I L ++ Y +D L+ W P E +R AGVSSFGS
Sbjct: 778 LKVVLAFRHRELPPLLHFKQLNDHIDLANTPFYPVDQLRSWDVP--EGAIRKAGVSSFGS 835
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GGTN+HVVL EY I PLIFVLSA+ + L Y +K+++WL
Sbjct: 836 GGTNSHVVLEEYPQRPARPI---------TPKGPLIFVLSARNQENLRAYAQKFLDWLRG 886
Query: 495 KESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPMQDKLDSFNE 554
+++ LR++ LQ GRQAM RLAL + + DDL +QL F M D+L
Sbjct: 887 EKAATPPLREMIYTLQVGRQAMEQRLALAVSDIDDLCAQLTRFCGGH--DMNDEL----- 939
Query: 555 SKNKIDIATVINLAIKEKNFKKIAILWQSGININWSLIDKKNI---RISLPTYPFSKYYY 611
++A+ W+SG ++W+ + K+ RISLPTYPF+ Y
Sbjct: 940 --------------------PEMAVWWKSGEQVDWASLYKEETRPRRISLPTYPFAHEAY 979
Query: 612 W 612
W
Sbjct: 980 W 980
|
Source: symbiont bacterium of Theonella swinhoei Species: symbiont bacterium of Theonella swinhoei Genus: Family: Order: Class: Phylum: Superkingdom: Bacteria |
| >gi|291191811|gb|ADD82939.1| Bat1 [Pseudomonas fluorescens] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/626 (45%), Positives = 392/626 (62%), Gaps = 28/626 (4%)
Query: 8 INNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG 67
+ + DIAI+G AC LP I TL FW++L G VI + E RW WP++I+ KH+G
Sbjct: 559 VPRVGLDIAIVGAACRLPFDIETLDGFWQLLLNGEEVIGTVPEGRWQWPVDIEPHTKHRG 618
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
I+ GAFL D+ FD FF+ISP EAE MDPQQRILLELSW+ +EDAGY S L+GS TGV
Sbjct: 619 IDQGAFLSDVARFDGAFFRISPHEAELMDPQQRILLELSWQCLEDAGYCPSSLAGSRTGV 678
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
++GASGSDY RLL D + H +G SM++L NRISYFY+F GPS+LIDTACSSSLV
Sbjct: 679 YVGASGSDY-RLLVDRTGAGIEGHSGLGTSMSILPNRISYFYDFCGPSMLIDTACSSSLV 737
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247
AVH+A++S++ G +QA+V GIN++ PS T+AYY+AGMLS DG C+TFD +A+GYVR E
Sbjct: 738 AVHQAIESLRAGNCTQAMVAGINIMCDPSTTVAYYRAGMLSTDGRCRTFDASANGYVRAE 797
Query: 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307
GAVML+LKP AL D+DNIYA++KGSA+ H G + GLT PNP Q+ L+ A ++ID
Sbjct: 798 GAVMLLLKPYEYALRDNDNIYAVLKGSAVNHGGLAGGLTVPNPRAQAELVMGACRNADID 857
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEA 367
+ SLGYIE HGTGT LGDPIE+ GLK+AF + + +CGLGS+KTN GHLEA
Sbjct: 858 INSLGYIEAHGTGTSLGDPIEVAGLKSAFER---FTADGDPVNARCGLGSLKTNFGHLEA 914
Query: 368 ASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427
A+GI G+LK +LCL++ +P SLNF LN I L + +++D W P + R A
Sbjct: 915 AAGIAGLLKAMLCLRHNVIPGSLNFDRLNPLIDLSGTPFHVVDATTAW--PASHEEPRRA 972
Query: 428 GVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKK 487
GVSSFGSGGTNAHV++ E+ + + + + L LI L AK+ +LL
Sbjct: 973 GVSSFGSGGTNAHVIVEEHRLPLA---VETPGLAVSPQRLVLIL-LCAKSAQRLLESAHS 1028
Query: 488 YIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPMQD 547
L++ + L D+ LQ GR++M RLAL + +L +L+ + + ++
Sbjct: 1029 LRTCLSHDRFADKDLVDIAYTLQVGRESMEHRLALTATSIRELHEKLDAYIAAAAVQVEY 1088
Query: 548 KLDSFNESK----------NKIDIATVINLAIKEKNFKKIAILWQSGININWSLIDKKN- 596
E K D ++N+ I + + LW G++++WS + ++
Sbjct: 1089 GDVHVGEVKKGSEGLIALGQDADFLNLLNIWIAKGKHSPLLALWVRGLDVDWSSLYREGG 1148
Query: 597 -------IRISLPTYPFSKYYYWLPK 615
R+SL TY F + +W+ +
Sbjct: 1149 AYEALSPRRVSLATYSFERTPHWVGR 1174
|
Source: Pseudomonas fluorescens Species: Pseudomonas fluorescens Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|339009655|ref|ZP_08642226.1| putative polyketide synthase PksN [Brevibacillus laterosporus LMG 15441] gi|338772925|gb|EGP32457.1| putative polyketide synthase PksN [Brevibacillus laterosporus LMG 15441] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/636 (46%), Positives = 426/636 (66%), Gaps = 22/636 (3%)
Query: 7 SINNLNKD-IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKH 65
S +N+ KD IAIIG AC LP G++ L + W++L I + E RW WP +I +H
Sbjct: 839 SHSNVEKDDIAIIGAACRLPGGVSNLDELWELLVNNRDAIRRMPEHRWAWPDKIHPATEH 898
Query: 66 KGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNT 125
KGI+ G FL I FD FF+ISP EAE +DPQQR+L+ELSW+ IE A Y +S +SGSNT
Sbjct: 899 KGIDQGGFLDHIAEFDPLFFRISPSEAEILDPQQRLLMELSWECIEGANYSASTISGSNT 958
Query: 126 GVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
GVFIGASGSDY++LL Y V A + I SMA+L+NRISYFYNF GPS+ IDTACSSS
Sbjct: 959 GVFIGASGSDYSKLLDRYSD-EVQAKYGIATSMAILSNRISYFYNFHGPSVQIDTACSSS 1017
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH+A+ S+++GE QALVGG++L+ HP+N+IAYYKAGMLS DG CKTFDK A+GYVR
Sbjct: 1018 LVAVHQAVTSLQSGECEQALVGGVHLMCHPANSIAYYKAGMLSTDGKCKTFDKAANGYVR 1077
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEG V+L+LKP+ A D D+I +IKG+A H GQ+NG+T PNP +Q+ L++KA+ ++
Sbjct: 1078 GEGGVVLLLKPMKQAERDGDSILGVIKGTATNHGGQANGITVPNPAKQAALIKKAFRSAD 1137
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
I S+GYIE HGTGT LGDPIE LK+AF + N Y CGLGS+KTN+GHL
Sbjct: 1138 IAPESVGYIEAHGTGTSLGDPIEFAALKDAFLELSQQSDNRNEPY--CGLGSIKTNIGHL 1195
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+G+ G++K+++ L+++ +PASL+F LN +I +++S Y++ Q W+ P E LR
Sbjct: 1196 EAAAGLAGLVKVLVSLRHRMIPASLHFQELNPHIPIENSPFYLVTSNQKWMPPHREG-LR 1254
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYV 485
AG+SSFGSGG+NAH+V+ EY N+++ + + N P++ VLSA+ +++L V
Sbjct: 1255 RAGISSFGSGGSNAHIVIEEYR--SNHRVDTKRATSNSN---PVMIVLSARNENRLQEQV 1309
Query: 486 KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
K+ ++ + N+ ++ L+D+ L R+AM R A V+ + D+L L + ++K P
Sbjct: 1310 KQLLQAIKNQNLTDVHLKDMAYTLHVAREAMEERFATVVCDIDELEKSLLDYLDRKGTPK 1369
Query: 546 QDKLDSFNESKNKIDIA-------TVINLAIKEKNFKKIAILWQSGININWSLIDKKNI- 597
+ + NE+ + ++ ++N I + ++A LW SG++I+W ++ K
Sbjct: 1370 SNYQGNVNENHSISSLSIGNEEKHEMVNHFIVNNDLHQLAYLWVSGLDIDWKVLYKSEAD 1429
Query: 598 --RISLPTYPFSKYYYWLPKNNLNKKISNSDDTQIS 631
++SLPTYPF++ YW+ + ++ + S QIS
Sbjct: 1430 YRKMSLPTYPFARERYWI--SEISSRYDMSQTEQIS 1463
|
Source: Brevibacillus laterosporus LMG 15441 Species: Brevibacillus laterosporus Genus: Brevibacillus Family: Paenibacillaceae Order: Bacillales Class: Bacilli Phylum: Firmicutes Superkingdom: Bacteria |
| >gi|421875127|ref|ZP_16306723.1| polyketide synthase PksN domain protein [Brevibacillus laterosporus GI-9] gi|372455873|emb|CCF16272.1| polyketide synthase PksN domain protein [Brevibacillus laterosporus GI-9] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/646 (45%), Positives = 425/646 (65%), Gaps = 20/646 (3%)
Query: 7 SINNLNKD-IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKH 65
S +N+ KD IAIIG AC LP G++ L + W++L I + E RW WP I +H
Sbjct: 810 SHSNIEKDDIAIIGAACRLPGGVSNLDELWELLVNNRDAIRRMPEHRWAWPDTIHPTTEH 869
Query: 66 KGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNT 125
KGI+ G FL I FD FF+ISP EAE +DPQQR+L+ELSW+ IE A Y +S +SGSNT
Sbjct: 870 KGIDQGGFLDHIAEFDPLFFRISPSEAEILDPQQRLLMELSWECIEGANYSASAISGSNT 929
Query: 126 GVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
GVFIGASGSDY++LL Y V A + I SMA+L+NRISYFYNF GPS+ IDTACSSS
Sbjct: 930 GVFIGASGSDYSKLLDRYSD-EVQAKYGIATSMAILSNRISYFYNFHGPSVQIDTACSSS 988
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH+A+ S+++GE QALVGG++L+ HP+N+IAYYKAGMLS DG CKTFDK A+GYVR
Sbjct: 989 LVAVHQAVTSLQSGECEQALVGGVHLMCHPANSIAYYKAGMLSTDGKCKTFDKAANGYVR 1048
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEG V+L+LKP+ A D D+I +IKG+A H GQ+NG+T PNP +Q+ L++KA+ ++
Sbjct: 1049 GEGGVVLLLKPVKQAERDGDSILGVIKGTATNHGGQANGITVPNPAKQAALIKKAFRSAD 1108
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
I S+GYIE HGTGT LGDPIE LK+AF + N Y CGLGS+KTN+GHL
Sbjct: 1109 IAPESVGYIEAHGTGTSLGDPIEFAALKDAFLELSQQSDNRNEPY--CGLGSIKTNIGHL 1166
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+G+ G++K+++ L+++ +PASL+F LN +I +++S Y++ Q W+ P E LR
Sbjct: 1167 EAAAGLAGLVKVLVSLRHRMIPASLHFQELNPHIPIENSPFYLVTSNQKWMPPHREG-LR 1225
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYV 485
AG+SSFGSGG+NAH+V+ EY N+++ + + N P++ VLSA+ +++L V
Sbjct: 1226 RAGISSFGSGGSNAHIVIEEYR--SNHRVDTKRATSNSN---PVMIVLSARNENRLQEQV 1280
Query: 486 KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
K+ ++ + N+ ++ L+D+ L R+AM R A V+ + D+L L + ++K
Sbjct: 1281 KQLLQAIKNQNLTDVHLKDMAYTLHVAREAMEERFATVVCDIDELEKSLLDYLDRKGTLK 1340
Query: 546 QDKLDSFNESKNKIDIA-------TVINLAIKEKNFKKIAILWQSGININWSLIDKKNI- 597
+ + NE+ + ++ ++N I + ++A LW SG++I+W ++ K
Sbjct: 1341 SNYQGNVNENHSISSLSIGNEEKHEMVNHFIGNNDLHQLAYLWVSGLDIDWKVLYKSEAD 1400
Query: 598 --RISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQ 641
++SLPTYPF++ YW+ + + IS ++ D LQ
Sbjct: 1401 YRKMSLPTYPFARERYWISEISSRYDISQTEKISADTRDMLHPLLQ 1446
|
Source: Brevibacillus laterosporus GI-9 Species: Brevibacillus laterosporus Genus: Brevibacillus Family: Paenibacillaceae Order: Bacillales Class: Bacilli Phylum: Firmicutes Superkingdom: Bacteria |
| >gi|121597786|ref|YP_989785.1| polyketide synthase [Burkholderia mallei SAVP1] gi|121225584|gb|ABM49115.1| polyketide synthase [Burkholderia mallei SAVP1] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/613 (45%), Positives = 384/613 (62%), Gaps = 36/613 (5%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC LP G++T FW LK G+ V+ EL RW WP +ID +H+GI+ G FL
Sbjct: 797 IAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFL 856
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA F++SP E +MDPQQRILLEL+W+ IE AG+ + ++GS TGV++GASGS
Sbjct: 857 DDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGS 916
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RLL + V+AH G SMAV+ANRISY Y+ GPS+ +DTACSSSLVA+H+A+Q
Sbjct: 917 DY-RLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQ 975
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
+++ GE QALVGG+N+I HP NTIAYYKAGMLS G CKT D ADGYVR EGAVMLML
Sbjct: 976 ALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLML 1035
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ L A+ D D I+A+I+GSA H G + GLT P+P +Q+ LL+ AW + + +GY+
Sbjct: 1036 RRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYL 1095
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT+LGDPIE++GL +AF + ++ CG+GSVK+NLGHLEAA+G+ G+
Sbjct: 1096 EMHGTGTRLGDPIEVRGLADAFGA-----RDDAAARGTCGIGSVKSNLGHLEAAAGLAGV 1150
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK +L LK++++PA+L+F LN I L + ++D + W P R+AGVSSFGS
Sbjct: 1151 LKTVLALKHREVPATLHFSRLNAQISLARTPFAVVDTHRAW--PARGGARRLAGVSSFGS 1208
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GG NAHVVL EY E + + +FVLSA + QL Y ++ + +
Sbjct: 1209 GGANAHVVLEEYPSEAPPRAAAGDA----------LFVLSAHCREQLAEYARRVLAYCER 1258
Query: 495 KESLN---ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKI--------- 542
+ + + LQ+ RQAM RLA V + ++ + +L F
Sbjct: 1259 RLQSGDDAPAAAAVAHALQR-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGGG 1317
Query: 543 IPMQDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGINI-NWS-LIDKKNIRIS 600
P D N++ D+ V++ ++E+ K+A W G+ I NWS L D + +
Sbjct: 1318 APKTSVADFVNQNP---DVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVP 1374
Query: 601 LPTYPFSKYYYWL 613
LP YPF++ +W+
Sbjct: 1375 LPCYPFARERHWI 1387
|
Source: Burkholderia mallei SAVP1 Species: Burkholderia mallei Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|67640421|ref|ZP_00439228.1| polyketide synthase [Burkholderia mallei GB8 horse 4] gi|124383166|ref|YP_001024268.1| DszB [Burkholderia mallei NCTC 10229] gi|238521130|gb|EEP84584.1| polyketide synthase [Burkholderia mallei GB8 horse 4] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/613 (45%), Positives = 384/613 (62%), Gaps = 36/613 (5%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC LP G++T FW LK G+ V+ EL RW WP +ID +H+GI+ G FL
Sbjct: 777 IAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFL 836
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA F++SP E +MDPQQRILLEL+W+ IE AG+ + ++GS TGV++GASGS
Sbjct: 837 DDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGS 896
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RLL + V+AH G SMAV+ANRISY Y+ GPS+ +DTACSSSLVA+H+A+Q
Sbjct: 897 DY-RLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQ 955
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
+++ GE QALVGG+N+I HP NTIAYYKAGMLS G CKT D ADGYVR EGAVMLML
Sbjct: 956 ALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLML 1015
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ L A+ D D I+A+I+GSA H G + GLT P+P +Q+ LL+ AW + + +GY+
Sbjct: 1016 RRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYL 1075
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT+LGDPIE++GL +AF + ++ CG+GSVK+NLGHLEAA+G+ G+
Sbjct: 1076 EMHGTGTRLGDPIEVRGLADAFGA-----RDDAAARGTCGIGSVKSNLGHLEAAAGLAGV 1130
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK +L LK++++PA+L+F LN I L + ++D + W P R+AGVSSFGS
Sbjct: 1131 LKTVLALKHREVPATLHFSRLNAQISLARTPFAVVDTHRAW--PARGGARRLAGVSSFGS 1188
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GG NAHVVL EY E + + +FVLSA + QL Y ++ + +
Sbjct: 1189 GGANAHVVLEEYPSEAPPRAAAGDA----------LFVLSAHCREQLAEYARRVLAYCER 1238
Query: 495 KESLN---ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKI--------- 542
+ + + LQ+ RQAM RLA V + ++ + +L F
Sbjct: 1239 RLQSGDDAPAAAAVAHALQR-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGGG 1297
Query: 543 IPMQDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGINI-NWS-LIDKKNIRIS 600
P D N++ D+ V++ ++E+ K+A W G+ I NWS L D + +
Sbjct: 1298 APKTSVADFVNQNP---DVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVP 1354
Query: 601 LPTYPFSKYYYWL 613
LP YPF++ +W+
Sbjct: 1355 LPCYPFARERHWI 1367
|
Source: Burkholderia mallei GB8 horse 4 Species: Burkholderia mallei Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|167922572|ref|ZP_02509663.1| polyketide synthase, type I [Burkholderia pseudomallei BCC215] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/610 (45%), Positives = 383/610 (62%), Gaps = 30/610 (4%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC LP G++T FW LK G+ V+ EL RW WP +ID +H+GI+ G FL
Sbjct: 20 IAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFL 79
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA F++SP E +MDPQQRILLEL+W+ IE AG+ + ++GS TGV++GASGS
Sbjct: 80 DDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGS 139
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RLL + V+AH G SMAV+ANRISY Y+ GPS+ +DTACSSSLVA+H+A+Q
Sbjct: 140 DY-RLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQ 198
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
+++ GE QALVGG+N+I HP NTIAYYKAGMLS G CKT D ADGYVR EGAVMLML
Sbjct: 199 ALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLML 258
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ L A+ D D I+A+I+GSA H G + GLT P+P +Q+ LL+ AW + + +GY+
Sbjct: 259 RRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYL 318
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT+LGDPIE++GL +AF + ++ CG+GSVK+NLGHLEAA+G+ G+
Sbjct: 319 EMHGTGTRLGDPIEVRGLADAFGA-----RDDAAARGTCGIGSVKSNLGHLEAAAGLAGV 373
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK +L LK++++PA+L+F LN I L + ++D + W P R+AGVSSFGS
Sbjct: 374 LKTVLALKHREVPATLHFSRLNAQISLARTPFAVVDTHRAW--PARGGARRLAGVSSFGS 431
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GG NAHVVL EY E + + +FVLSA ++ QL Y ++ + +
Sbjct: 432 GGANAHVVLEEYPSEAPPRAAAGDA----------LFVLSAHSREQLAEYARRVLAYCER 481
Query: 495 KESLN---ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIP------M 545
+ + + LQ+ RQAM RLA V + ++ + +L F P
Sbjct: 482 RLQSGDDAPAAAAVAHALQR-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGGG 540
Query: 546 QDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGINI-NWS-LIDKKNIRISLPT 603
K + D+ V++ ++E+ K+A W G+ I NWS L D + + LP
Sbjct: 541 APKTSVADFVNQNPDVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVPLPC 600
Query: 604 YPFSKYYYWL 613
YPF++ +W+
Sbjct: 601 YPFARERHWI 610
|
Source: Burkholderia pseudomallei BCC215 Species: Burkholderia pseudomallei Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|167914676|ref|ZP_02501767.1| OnnB [Burkholderia pseudomallei 112] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/610 (45%), Positives = 383/610 (62%), Gaps = 30/610 (4%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC LP G++T FW LK G+ V+ EL RW WP +ID +H+GI+ G FL
Sbjct: 26 IAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFL 85
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA F++SP E +MDPQQRILLEL+W+ IE AG+ + ++GS TGV++GASGS
Sbjct: 86 DDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGS 145
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RLL + V+AH G SMAV+ANRISY Y+ GPS+ +DTACSSSLVA+H+A+Q
Sbjct: 146 DY-RLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQ 204
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
+++ GE QALVGG+N+I HP NTIAYYKAGMLS G CKT D ADGYVR EGAVMLML
Sbjct: 205 ALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLML 264
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ L A+ D D I+A+I+GSA H G + GLT P+P +Q+ LL+ AW + + +GY+
Sbjct: 265 RRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYL 324
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT+LGDPIE++GL +AF + ++ CG+GSVK+NLGHLEAA+G+ G+
Sbjct: 325 EMHGTGTRLGDPIEVRGLADAFGA-----RDDAAARGTCGIGSVKSNLGHLEAAAGLAGV 379
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK +L LK++++PA+++F LN I L + ++D + W P R+AGVSSFGS
Sbjct: 380 LKTVLALKHREVPATIHFSRLNAQISLARTPFAVVDTHRAW--PARGGARRLAGVSSFGS 437
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GG NAHVVL EY E + + +FVLSA ++ QL Y ++ + +
Sbjct: 438 GGANAHVVLEEYPSEAPPRAAAGDA----------LFVLSAHSREQLAEYARRVLAYCER 487
Query: 495 KESLN---ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIP------M 545
+ + + LQ+ RQAM RLA V + ++ + +L F P
Sbjct: 488 RLQSGDDAPAAAAVAHALQR-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGSG 546
Query: 546 QDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGINI-NWS-LIDKKNIRISLPT 603
K + D+ V++ ++E+ K+A W G+ I NWS L D + + LP
Sbjct: 547 APKTSVADFVNQNPDVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVPLPC 606
Query: 604 YPFSKYYYWL 613
YPF++ +W+
Sbjct: 607 YPFARERHWI 616
|
Source: Burkholderia pseudomallei 112 Species: Burkholderia pseudomallei Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|167906350|ref|ZP_02493555.1| polyketide synthase, type I [Burkholderia pseudomallei NCTC 13177] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/610 (45%), Positives = 383/610 (62%), Gaps = 30/610 (4%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC LP G++T FW LK G+ V+ EL RW WP +ID +H+GI+ G FL
Sbjct: 16 IAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFL 75
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
DI FDA F++SP E +MDPQQRILLEL+W+ IE AG+ + ++GS TGV++GASGS
Sbjct: 76 DDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGS 135
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RLL + V+AH G SMAV+ANRISY Y+ GPS+ +DTACSSSLVA+H+A+Q
Sbjct: 136 DY-RLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQ 194
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
+++ GE QALVGG+N+I HP NTIAYYKAGMLS G CKT D ADGYVR EGAVMLML
Sbjct: 195 ALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLML 254
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ L A+ D D I+A+I+GSA H G + GLT P+P +Q+ LL+ AW + + +GY+
Sbjct: 255 RRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYL 314
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
E HGTGT+LGDPIE++GL +AF + ++ CG+GSVK+NLGHLEAA+G+ G+
Sbjct: 315 EMHGTGTRLGDPIEVRGLADAFGA-----RDDAAARGTCGIGSVKSNLGHLEAAAGLAGV 369
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
LK +L LK++++PA+++F LN I L + ++D + W P R+AGVSSFGS
Sbjct: 370 LKTVLALKHREVPATIHFSRLNAQISLARTPFAVVDTHRAW--PARGGARRLAGVSSFGS 427
Query: 435 GGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GG NAHVVL EY E + + +FVLSA ++ QL Y ++ + +
Sbjct: 428 GGANAHVVLEEYPSEAPPRAAAGDA----------LFVLSAHSREQLAEYARRVLAYCER 477
Query: 495 KESLN---ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIP------M 545
+ + + LQ+ RQAM RLA V + ++ + +L F P
Sbjct: 478 RLQSGDDAPAAAAVAHALQR-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGGG 536
Query: 546 QDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGINI-NWS-LIDKKNIRISLPT 603
K + D+ V++ ++E+ K+A W G+ I NWS L D + + LP
Sbjct: 537 APKTSVADFVNQNPDVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVPLPC 596
Query: 604 YPFSKYYYWL 613
YPF++ +W+
Sbjct: 597 YPFARERHWI 606
|
Source: Burkholderia pseudomallei NCTC 13177 Species: Burkholderia pseudomallei Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | ||||||
| UNIPROTKB|Q4KCD6 | 4039 | rzxD "Polyketide synthase RzxD | 0.705 | 0.145 | 0.385 | 9e-105 | |
| UNIPROTKB|Q4KCD3 | 2541 | rzxF "Polyketide synthase RzxF | 0.635 | 0.207 | 0.423 | 6.2e-103 | |
| UNIPROTKB|Q4KCD8 | 6675 | rzxB "Polyketide synthase/nonr | 0.703 | 0.087 | 0.378 | 3.9e-97 | |
| UNIPROTKB|Q4KCD7 | 4937 | rzxC "Polyketide synthase RzxC | 0.693 | 0.116 | 0.355 | 2.4e-94 | |
| UNIPROTKB|Q4KCD4 | 4163 | rzxE "Polyketide synthase RzxE | 0.499 | 0.099 | 0.440 | 3.5e-90 | |
| UNIPROTKB|O86335 | 1402 | pks6 "Polyketide synthase 12" | 0.601 | 0.356 | 0.373 | 6e-86 | |
| UNIPROTKB|Q7TXM0 | 1876 | ppsA "Phthiocerol/phenolphthio | 0.501 | 0.222 | 0.413 | 3.4e-84 | |
| UNIPROTKB|Q10977 | 1876 | ppsA "Phthiocerol synthesis po | 0.501 | 0.222 | 0.411 | 1.2e-83 | |
| UNIPROTKB|P96202 | 2188 | ppsC "Phthiocerol synthesis po | 0.501 | 0.190 | 0.433 | 2.1e-83 | |
| UNIPROTKB|Q7TXL8 | 2188 | ppsC "Phthiocerol/phenolphthio | 0.501 | 0.190 | 0.433 | 2.1e-83 |
| UNIPROTKB|Q4KCD6 rzxD "Polyketide synthase RzxD" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 9.0e-105, Sum P(3) = 9.0e-105
Identities = 240/622 (38%), Positives = 351/622 (56%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIW------P-LEIDIKNKHK 66
+IA+IG++ P + +F+ LK G I E+ +RW W P E+D N
Sbjct: 1525 EIAVIGISGRFPMA-EDVEQFFHNLKDGRDCISEIPANRWDWREYYGDPHREVDKTN--- 1580
Query: 67 GINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTG 126
+ +G F+ ++ FD FF ISP EA+ MDPQQR+L+ W IEDAGY S+ L+GS+TG
Sbjct: 1581 -VKWGGFIHGVDHFDPLFFAISPREAQLMDPQQRLLMTYVWLAIEDAGYASADLAGSDTG 1639
Query: 127 VFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
+F+G + Y+ L++ IPV + +V NR+S+ +F GPS ++TACSSSL
Sbjct: 1640 IFVGTGVTGYSSLIAK-AGIPVEGYSATAMVPSVGPNRMSFLLDFHGPSEPVETACSSSL 1698
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRG 246
VA+H A+Q+I +G+ + A+VGG+N ++ P I++ KAGML+ DG KTF A+GY RG
Sbjct: 1699 VAIHRAVQAIHSGDCAMAVVGGVNTLIAPEAQISFSKAGMLALDGRSKTFSAQANGYARG 1758
Query: 247 EGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNI 306
EG M++LK + A D DNIYA+I+ +A H G++N LTAPNP Q+ LL+ A+ ++ +
Sbjct: 1759 EGVGMIVLKKRAQAEADGDNIYALIRSTAENHGGKANSLTAPNPRAQAELLKSAYRKAGV 1818
Query: 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLE 366
D RS+GYIE HGTGT+LGDPIEI GLK AF + N CG+GSVK+N+GHLE
Sbjct: 1819 DPRSVGYIEAHGTGTELGDPIEINGLKMAFRELNQELGNEALAQGYCGVGSVKSNMGHLE 1878
Query: 367 AASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDW--VKPKYENKL 424
A+GI G SL+ LN I+LD+S Y++ H + W ++ + N+L
Sbjct: 1879 LAAGIAGVIKVLLQLKHKTLFKSLHCEQLNPYIELDNSPFYVVQHNRPWAAIQDRQGNQL 1938
Query: 425 -RIAGVSSFGSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLI 483
R AGVSSFG GG NAHV+L FVLSA+T +L
Sbjct: 1939 PRRAGVSSFGFGGANAHVLLEEYRAPQVDRPLPATGARA--------FVLSARTPERLRE 1990
Query: 484 YVKKYIEWLN---NKESLNIS--LRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFY 538
++ + ++ +++ L L DL LQ GR AM R+AL+ + DL QL+ F
Sbjct: 1991 AARRLVAFIAARAHQDPLESQAYLDDLAYTLQVGRDAMQERVALLSDSLSDLQRQLDDFA 2050
Query: 539 EKKIIPMQDKLDSFNES----KNKIDIATVINLAIKEKNFKKIAILWQSGININWSLIDK 594
+ +S N + + D+A + I + + K+ LW G+ I+W +
Sbjct: 2051 ATGKAVYRGVSESDNPALALFRQDEDMAGALAAWIDKCKYPKLLELWVQGLQIDWRQLYP 2110
Query: 595 KNI---RISLPTYPFSKYYYWL 613
N R+SLP YPF++ +W+
Sbjct: 2111 GNRPLRRLSLPGYPFAQERHWV 2132
|
|
| UNIPROTKB|Q4KCD3 rzxF "Polyketide synthase RzxF" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 6.2e-103, Sum P(3) = 6.2e-103
Identities = 237/559 (42%), Positives = 316/559 (56%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWP-LEIDIKNKHKGINFGAF 73
+AI+G + P G +T +FW++L + + I EL W P + ++ + G F
Sbjct: 52 VAIVGFSGRFP-GADTAEQFWQLLLEERASISEL--PYWHLPGIAERVQLRETFTCPGGF 108
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+ D FDA FFKIS EAE+MDPQ R++LE +W EDA L GSNTGVFIG S
Sbjct: 109 INDPSAFDADFFKISAREAEAMDPQHRLVLEQTWAAFEDAAICPHDLRGSNTGVFIGISS 168
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
+DY LL+ + AH GN+ +++ANRIS+ ++F GPS IDTACSSSLVAVH A
Sbjct: 169 ADYNGLLA---RSEAGAHDATGNAHSIIANRISFVFDFHGPSAPIDTACSSSLVAVHRAA 225
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
QSI NG+ + A+ GG+NL P I KAGMLS G CK F +ADGYVRGEG +L+
Sbjct: 226 QSILNGDCTVAVAGGVNLCFEPMVFIGALKAGMLSPTGRCKAFAADADGYVRGEGVGVLI 285
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGY 313
LK AL D DNI A I GSA H G +N LTAPNP Q+ L+++A ID+ S+GY
Sbjct: 286 LKDYQQALADGDNIVAAIIGSAENHGGHANSLTAPNPRAQADLIKQACR--GIDINSIGY 343
Query: 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITG 373
IE HGTGT+LGDPIEI GLK AF + N ++C LGSVKTN+GHLE+A+GI G
Sbjct: 344 IEVHGTGTRLGDPIEISGLKQAFAELGA------NPEQRCYLGSVKTNIGHLESAAGIAG 397
Query: 374 XXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDW--VKPKYENKL-RIAGVS 430
P SL+ LN I L S ++ ++W V + L R AGVS
Sbjct: 398 VIKTLLVLKQGYLPKSLHSEQLNPYIDLAGSPFAVLQTGREWPQVSDRQGQALPRRAGVS 457
Query: 431 SFGSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLIYVKKYIE 490
SFG GG NAHVVL +FVLSAKT L +++ I+
Sbjct: 458 SFGFGGANAHVVLEAVEPVIPGNEPQGAAS---------VFVLSAKTPEALQSRIEQLID 508
Query: 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPMQDKL- 549
++ + L ++ +L + LQ GR+AM R V +RD LLSQL + P K+
Sbjct: 509 FVQRQPQLQLA--ELAVSLQLGREAMEYRCGFVAHSRDSLLSQLRDSGAGEGGPPAGKIA 566
Query: 550 -DSFNESKNKIDIATVINL 567
+ + + + D+ T+++L
Sbjct: 567 PEPLHRALQQRDLGTLLSL 585
|
|
| UNIPROTKB|Q4KCD8 rzxB "Polyketide synthase/nonribosomal peptide synthetase hybrid RzxB" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 3.9e-97, Sum P(3) = 3.9e-97
Identities = 239/632 (37%), Positives = 343/632 (54%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKH-KG-IN--F 70
IAIIGLA P G + +FW LK G I E+ RW L+ +++ KG IN +
Sbjct: 1799 IAIIGLAGRFP-GAPDIERFWDNLKNGVDSISEIPAERWAH-LQYYSRDRSLKGKINSKW 1856
Query: 71 GAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSG---SNTGV 127
G F+ D++ FD FF ISP +AE MDPQ+RI LE +W T+EDAGYD + L GV
Sbjct: 1857 GGFIDDVDRFDPLFFNISPRDAERMDPQERIFLETAWHTLEDAGYDRAALQRHYQGKMGV 1916
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
F+G +Y LL + S +ANR+SY ++ TGPS+ IDT CSSSL
Sbjct: 1917 FVGVMHGEY--LLYTRSAAADCTDDAVDASFGSIANRVSYVFDCTGPSMAIDTICSSSLT 1974
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247
A+H A+QS+K GE AL GG+NL LHP+ + M S DG C++F + DG+V GE
Sbjct: 1975 ALHLAVQSLKRGECRVALAGGVNLSLHPNKYFIQSQLTMSSSDGRCRSFGEGGDGFVPGE 2034
Query: 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307
GA ++LKPLS A D DNIY +I+ +++ HNG+++G T P+P Q ++ ++ ++ ++
Sbjct: 2035 GAGAVLLKPLSQAQADGDNIYGVIRATSVNHNGKTHGYTVPSPNAQGAMIAESLEKAGMN 2094
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEA 367
R L YIE HGTGT LGDPIEI GL+ F + ++C LGS K+N+GHLE+
Sbjct: 2095 PRELSYIEAHGTGTALGDPIEISGLQQGFARRSAALGSEPAPAQQCALGSAKSNIGHLES 2154
Query: 368 ASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKY--ENKLR 425
A+GI G SL+ LN I D S +I LQ+W +P+ + + R
Sbjct: 2155 AAGIAGVAKVLLQLKHRQLAPSLHSSRLNPGIAFDQSPFHIPQQLQEWRRPRLNLDGRER 2214
Query: 426 ----IAGVSSFGSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQL 481
A VSSFGSGG+N HV++ P I VLSA+T SQL
Sbjct: 2215 EYPLAASVSSFGSGGSNGHVIIAQYLAPERDEPVAGQ---------PAIIVLSARTPSQL 2265
Query: 482 LIYVKKYIEWLNNKESLNI--SLRDLTLQLQKGRQAMNCRLAL--VIFN--RDDL---LS 532
V++ ++L +E L DL LQ+GR+A+ RL F+ ++ L L+
Sbjct: 2266 QQQVERLQQFLQRREQQGQLPRLADLAFTLQQGREALEYRLGFSAASFSALQERLAQGLA 2325
Query: 533 QL-----NF--FYEKKIIPMQDKLDSFNESKNKIDIA-TVINLAIKEKNFKKIAILWQSG 584
QL +F F + +Q+ + + D+A T+ A K K+ +K+ LW G
Sbjct: 2326 QLLKAPEHFGCFDGLHLGRVQENKAAMAVLAHDEDMAATLAAWADKGKH-QKLLELWGKG 2384
Query: 585 ININWSLIDKK--NIR-ISLPTYPFSKYYYWL 613
+N +W+L+ ++R ISLP YPF++ W+
Sbjct: 2385 LNFDWALLGMPMGSVRRISLPGYPFARERIWV 2416
|
|
| UNIPROTKB|Q4KCD7 rzxC "Polyketide synthase RzxC" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 2.4e-94, Sum P(2) = 2.4e-94
Identities = 221/622 (35%), Positives = 321/622 (51%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLE---ID-----IKNKHK 66
IAIIG++ P+ N L ++W+ LK G I E+ RW PLE +D +K
Sbjct: 3241 IAIIGISGRYPQAAN-LDEYWRNLKAGRDSITEIAPQRW--PLEGFYVDSVAEALKQARS 3297
Query: 67 GINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGS--- 123
+G F+ FD FF ISP EA +MDPQ+R+ L+ W+++EDAG + L+
Sbjct: 3298 YSKWGGFIDGFADFDPLFFNISPREAVNMDPQERLFLQSCWQSLEDAGITKADLATKYQG 3357
Query: 124 NTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACS 183
N GVF G + + Y L ++ S ANR+SY + GPS +DT CS
Sbjct: 3358 NVGVFAGITKTGYG-LYGPALREQGQLVFP-RTSFGSTANRVSYVLDLNGPSEPVDTMCS 3415
Query: 184 SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243
SSL A+H A +S++ GE A GG+NL LHPSN + MLS+DG C++F + +G+
Sbjct: 3416 SSLTALHRACESLRRGECRMAFAGGVNLYLHPSNYVELSAGQMLSKDGRCRSFGEGGNGF 3475
Query: 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303
V GEG L+LKPLS AL D DNI+ +I+ A+ H G++NG T PNP Q+ +++ A ++
Sbjct: 3476 VPGEGVGSLLLKPLSQALADRDNIHGVIRAVAVNHGGKTNGYTVPNPQAQAKVIRLAIDQ 3535
Query: 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLG 363
+ +D + YIE HGTGT+LGDPIE+ GL AF ++ C LGSVK N+G
Sbjct: 3536 AGLDASQISYIEAHGTGTELGDPIEVSGLTQAF-ALDQVALG------HCALGSVKANIG 3588
Query: 364 HLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENK 423
HLEAA+GI G SL+ LN N++LD + Y+ L DW +P
Sbjct: 3589 HLEAAAGIAGVSKVILQLKHRQLVPSLHAATLNPNLRLDATPFYLQQTLDDW-QPANAGP 3647
Query: 424 LRIAGVSSFGSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLI 483
RIAGVSSFG+GG NAHV+L + +LSA+ +L
Sbjct: 3648 -RIAGVSSFGAGGANAHVLLQEHDEYRPMPHASDAE----------VILLSARDADRLRD 3696
Query: 484 YVKKYIEWLNNKESLN-ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKI 542
Y + + ++ + L+ L +L LQ GR+ M RL L++ L ++L F +
Sbjct: 3697 YAQALLAYIEARPGLSGADLANLAYTLQHGREMMAARLGLIVDGVATLATRLRRFIDHDT 3756
Query: 543 IPMQDKLDSFNESKN---KIDIATVINLA--IKEKNFKKIAILWQSGININWSLIDKKN- 596
D + K + D + ++ ++ ++ W G I+WSL+ +
Sbjct: 3757 TADADFHRGDLQGKRPAAQADAEQAMQVSQWVESGQLHQLLQSWVKGAVIDWSLLQARRS 3816
Query: 597 ----IRISLPTYPFSKYYYWLP 614
RIS P YPF++ YWLP
Sbjct: 3817 GALPYRISAPVYPFARERYWLP 3838
|
|
| UNIPROTKB|Q4KCD4 rzxE "Polyketide synthase RzxE" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 3.5e-90, Sum P(4) = 3.5e-90
Identities = 191/434 (44%), Positives = 258/434 (59%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRW-IWP-LEIDIKNKHKGIN-F 70
DIAIIGL + L +FW L + +I+ + W I P + D + + + + +
Sbjct: 446 DIAIIGLHGQFAEA-GDLDQFWGNLWQDLELIKPVPADHWDIEPWFDADPEAQDRTYSRW 504
Query: 71 GAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIG 130
G+F+ D++ FDA FF +S EA+ MDPQ R+LL+ ++ E AG + L GSNTGVFIG
Sbjct: 505 GSFIADVDKFDAGFFNLSRREAQWMDPQVRLLLQSAYTCAEHAGVIAG-LRGSNTGVFIG 563
Query: 131 ASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
+ ++Y +S+ + +P++ + G+ + ANRIS++++F GPSL+ +TACSSSLVA+H
Sbjct: 564 SCFNEYIDKISE-LGLPMDPYIATGSG-TIAANRISFWFDFKGPSLMFNTACSSSLVALH 621
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKA-GMLSRDGICKTFDKNADGYVRGEGA 249
A +++NGE ALVGG NL+L S Y+ A LS G C TFD ADGYV GE
Sbjct: 622 AACMALRNGECGMALVGGSNLLLS-SWHYRYFSAIRALSPTGRCHTFDARADGYVPGECV 680
Query: 250 VMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVR 309
L+LKPL+ AL D D I +IKGSA H G + LTAP+ + ++ +AW + ID R
Sbjct: 681 ATLLLKPLAQALADGDPIQGVIKGSAALHGGYTPSLTAPSVAGEENVIVQAWQNAAIDPR 740
Query: 310 SLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAAS 369
+L YIE HGTGT+LGDPIEI LK AF Y N + F C +GSVK N+GH E A+
Sbjct: 741 TLSYIEAHGTGTRLGDPIEINALKRAF---ARYT-NDRGF---CHIGSVKANIGHTEGAA 793
Query: 370 GITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGV 429
GI G PA +F N +IKL+DS L I DW P+ R AGV
Sbjct: 794 GIAGVLKVLLQMKHKKLPALGHFQQHNPHIKLEDSPLLIDTQGCDW--PEQATPRR-AGV 850
Query: 430 SSFGSGGTNAHVVL 443
SSFG GTNAH VL
Sbjct: 851 SSFGFSGTNAHAVL 864
|
|
| UNIPROTKB|O86335 pks6 "Polyketide synthase 12" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.0e-86, Sum P(3) = 6.0e-86
Identities = 194/520 (37%), Positives = 273/520 (52%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
+A+IG+ C P I+ + W L + I +P + N G FL
Sbjct: 109 VAVIGVGCRFPGDIDGPERLWDFLTEKKCAITA-------YP-DRGFTNAGTFAESGGFL 160
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
KD+ FD FF I P EA MDPQQR+LLE+SW+ +E AG L S TGVF+G S +
Sbjct: 161 KDVAGFDNRFFDIPPDEALRMDPQQRLLLEVSWEALEHAGIIPESLRLSRTGVFVGVSST 220
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY RL+S + G S +++ANRISYF + GPS++IDTACSSSLVAVH A +
Sbjct: 221 DYVRLVSASAQQKSTIWDNTGGSSSIIANRISYFLDIQGPSIVIDTACSSSLVAVHLACR 280
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S+ + ALVGG N+++ P + +AG+LS+ G C FDK+ADG VRGEG +++L
Sbjct: 281 SLSTWDCDIALVGGTNVLISPEPWGGFREAGILSQTGCCHAFDKSADGMVRGEGCGVIVL 340
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
+ LS A + I AI+ GSA+ +G+SNG+ APNP Q +L+ A + +D +GY+
Sbjct: 341 QRLSDARLEGRRILAILTGSAVNQDGKSNGIMAPNPSAQIGVLENACKSARVDPLEIGYV 400
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGX 374
E HGTGT LGD IE L F +K + +GS+K N+GHLE A+GI G
Sbjct: 401 EAHGTGTSLGDRIEAHALGMVFG-----RKRPGS--GPLMIGSIKPNIGHLEGAAGIAGL 453
Query: 375 XXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
S F N I + L ++D LQ+W P + R AGVSSFG
Sbjct: 454 IKAVLMVERGSLLPSGGFTEPNPAIPFTELGLRVVDELQEW--PVVAGRPRRAGVSSFGF 511
Query: 435 GGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLIYVKKYIEWLNN 494
GGTNAHV++ + + +V+S KT S L + ++
Sbjct: 512 GGTNAHVIVEEAGSVGADTVSGRADVGGSGGGV-VAWVISGKTASALAAQAGRLGRYVRA 570
Query: 495 KESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQL 534
+ +L++ D+ L R + R +V RD+LL+ L
Sbjct: 571 RPALDVV--DVGYSLVSTRSVFDHRAVVVGQTRDELLAGL 608
|
|
| UNIPROTKB|Q7TXM0 ppsA "Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA" [Mycobacterium bovis AF2122/97 (taxid:233413)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 3.4e-84, Sum P(2) = 3.4e-84
Identities = 179/433 (41%), Positives = 254/433 (58%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWI----WPLEIDIKNKHKGINF 70
IA++G+ C P GI+ W L + S I ++ RW P E+ + +
Sbjct: 104 IAVVGMGCRFPGGISCPEALWDFLCERRSSISQVPPQRWQPFEGGPPEVAAALA-RTTRW 162
Query: 71 GAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIG 130
G+FL DI+ FDA FF+ISP EA+ MDPQQR+LLE++W+ +E AG L S TGVF G
Sbjct: 163 GSFLPDIDAFDAEFFEISPSEADKMDPQQRLLLEVAWEALEHAGIPPGTLRRSATGVFAG 222
Query: 131 ASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
A S+Y + S + V+ G +M+++ANR+SYF + GPS+ +DTACSSSLVA+H
Sbjct: 223 ACLSEYGAMASADLS-QVDGWSNSGGAMSIIANRLSYFLDLRGPSVAVDTACSSSLVAIH 281
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250
A QS++ + A+ G+NL+L P+ + + G LS G C+ FD ADG+VRGEGA
Sbjct: 282 LACQSLRTQDCHLAIAAGVNLLLSPAVFRGFDQVGALSPTGQCRAFDATADGFVRGEGAG 341
Query: 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310
+++LK L+ A D D + A+I GSA+T +G+SNGL APNP Q +L+ A+ + +
Sbjct: 342 VVVLKRLTDAQRDGDRVLAVICGSAVTQDGRSNGLMAPNPAAQMAVLRAAYTNAGMQPSE 401
Query: 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370
+ Y+E HGTGT LGDPIE + L + + ++ +GSVKTNLGH EAA+G
Sbjct: 402 VDYVEAHGTGTLLGDPIEARAL-----GTVLGRGRPED--SPLLIGSVKTNLGHTEAAAG 454
Query: 371 ITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVS 430
I G P + +F N +I D + ++D +W P + R AGVS
Sbjct: 455 IAGFIKTVLAVQHGQIPPNQHFETANPHIPFTDLRMKVVDTQTEW--PATGHPRR-AGVS 511
Query: 431 SFGSGGTNAHVVL 443
SFG GGTNAHVV+
Sbjct: 512 SFGFGGTNAHVVI 524
|
|
| UNIPROTKB|Q10977 ppsA "Phthiocerol synthesis polyketide synthase type I PpsA" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 178/433 (41%), Positives = 253/433 (58%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWI----WPLEIDIKNKHKGINF 70
IA++G+ C P GI+ W L + S I ++ RW P E+ + +
Sbjct: 104 IAVVGMGCRFPGGISCPEALWDFLCERRSSISQVPPQRWQPFEGGPPEVAAALA-RTTRW 162
Query: 71 GAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIG 130
G+FL DI+ FDA FF+ISP EA+ MDPQQR+LLE++W+ +E AG L S TGVF G
Sbjct: 163 GSFLPDIDAFDAEFFEISPSEADKMDPQQRLLLEVAWEALEHAGIPPGTLRRSATGVFAG 222
Query: 131 ASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
A S+Y + S + V+ G +M+++ANR+SYF + GPS+ +DTACSSSLVA+H
Sbjct: 223 ACLSEYGAMASADLS-QVDGWSNSGGAMSIIANRLSYFLDLRGPSVAVDTACSSSLVAIH 281
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250
A QS++ + A+ G+NL+L P+ + + G LS G C+ FD ADG+VRGEGA
Sbjct: 282 LACQSLRTQDCHLAIAAGVNLLLSPAVFRGFDQVGALSPTGQCRAFDATADGFVRGEGAG 341
Query: 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310
+++LK L+ A D D + A+I GSA+ +G+SNGL APNP Q +L+ A+ + +
Sbjct: 342 VVVLKRLTDAQRDGDRVLAVICGSAVNQDGRSNGLMAPNPAAQMAVLRAAYTNAGMQPSE 401
Query: 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370
+ Y+E HGTGT LGDPIE + L + + ++ +GSVKTNLGH EAA+G
Sbjct: 402 VDYVEAHGTGTLLGDPIEARAL-----GTVLGRGRPED--SPLLIGSVKTNLGHTEAAAG 454
Query: 371 ITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVS 430
I G P + +F N +I D + ++D +W P + R AGVS
Sbjct: 455 IAGFIKTVLAVQHGQIPPNQHFETANPHIPFTDLRMKVVDTQTEW--PATGHPRR-AGVS 511
Query: 431 SFGSGGTNAHVVL 443
SFG GGTNAHVV+
Sbjct: 512 SFGFGGTNAHVVI 524
|
|
| UNIPROTKB|P96202 ppsC "Phthiocerol synthesis polyketide synthase type I PpsC" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 2.1e-83, Sum P(2) = 2.1e-83
Identities = 189/436 (43%), Positives = 254/436 (58%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI---NFG 71
IA+IG+ C P G+N +FW +L G S I + RW + G G
Sbjct: 37 IAVIGMGCRFPGGVNNPEQFWDLLCAGRSGIVRVPAQRWDADAYYCDDHTVPGTICSTEG 96
Query: 72 AFLKDIEC--FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
FL + FDA FF ISP EA +MDPQQR+L+E++W+ +EDAG + G+ T VF+
Sbjct: 97 GFLTSWQPDEFDAEFFSISPREAAAMDPQQRLLIEVAWEALEDAGVPQHTIRGTQTSVFV 156
Query: 130 GASGSDYTRLLSDYIK-IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVA 188
G + DY L+ ++ + ++A+ GNS A R++Y GP+++IDTACSSSLVA
Sbjct: 157 GVTAYDYMLTLAGRLRPVDLDAYIPTGNSANFAAGRLAYILGARGPAVVIDTACSSSLVA 216
Query: 189 VHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEG 248
VH A QS++ ES ALVGG NL+L P +IA + GMLS +G CKTFD +ADGYVRGEG
Sbjct: 217 VHLACQSLRGRESDMALVGGTNLLLSPGPSIACSRWGMLSPEGRCKTFDASADGYVRGEG 276
Query: 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNID 307
A +++LK L A+ D + I A+++GSA+ +G S+G+T PN P QQ+ LL KA S +
Sbjct: 277 AAVVVLKRLDDAVRDGNRILAVVRGSAVNQDGASSGVTVPNGPAQQA-LLAKALTSSKLT 335
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEA 367
+ Y+E HGTGT LGDPIE+ L F + ++ +GSVKTNLGHLEA
Sbjct: 336 AADIDYVEAHGTGTPLGDPIELDSLSKVFSD--------RAGSDQLVIGSVKTNLGHLEA 387
Query: 368 ASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427
A+G+ G P LNF+ L + S L I DW P + R A
Sbjct: 388 AAGVAGLMKAVLAVHNGYIPRHLNFHQLTPHASEAASRLRIAADGIDW--PT-TGRPRRA 444
Query: 428 GVSSFGSGGTNAHVVL 443
GVSSFG GTNAHVV+
Sbjct: 445 GVSSFGVSGTNAHVVI 460
|
|
| UNIPROTKB|Q7TXL8 ppsC "Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsC" [Mycobacterium bovis AF2122/97 (taxid:233413)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 2.1e-83, Sum P(2) = 2.1e-83
Identities = 189/436 (43%), Positives = 254/436 (58%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI---NFG 71
IA+IG+ C P G+N +FW +L G S I + RW + G G
Sbjct: 37 IAVIGMGCRFPGGVNNPEQFWDLLCAGRSGIVRVPAQRWDADAYYCDDHTVPGTICSTEG 96
Query: 72 AFLKDIEC--FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
FL + FDA FF ISP EA +MDPQQR+L+E++W+ +EDAG + G+ T VF+
Sbjct: 97 GFLTSWQPDEFDAEFFSISPREAAAMDPQQRLLIEVAWEALEDAGVPQHTIRGTQTSVFV 156
Query: 130 GASGSDYTRLLSDYIK-IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVA 188
G + DY L+ ++ + ++A+ GNS A R++Y GP+++IDTACSSSLVA
Sbjct: 157 GVTAYDYMLTLAGRLRPVDLDAYIPTGNSANFAAGRLAYILGARGPAVVIDTACSSSLVA 216
Query: 189 VHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEG 248
VH A QS++ ES ALVGG NL+L P +IA + GMLS +G CKTFD +ADGYVRGEG
Sbjct: 217 VHLACQSLRGRESDMALVGGTNLLLSPGPSIACSRWGMLSPEGRCKTFDASADGYVRGEG 276
Query: 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNID 307
A +++LK L A+ D + I A+++GSA+ +G S+G+T PN P QQ+ LL KA S +
Sbjct: 277 AAVVVLKRLDDAVRDGNRILAVVRGSAVNQDGASSGVTVPNGPAQQA-LLAKALTSSKLT 335
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEA 367
+ Y+E HGTGT LGDPIE+ L F + ++ +GSVKTNLGHLEA
Sbjct: 336 AADIDYVEAHGTGTPLGDPIELDSLSKVFSD--------RAGSDQLVIGSVKTNLGHLEA 387
Query: 368 ASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427
A+G+ G P LNF+ L + S L I DW P + R A
Sbjct: 388 AAGVAGLMKAVLAVHNGYIPRHLNFHQLTPHASEAASRLRIAADGIDW--PT-TGRPRRA 444
Query: 428 GVSSFGSGGTNAHVVL 443
GVSSFG GTNAHVV+
Sbjct: 445 GVSSFGVSGTNAHVVI 460
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 831 | |||
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 0.0 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 0.0 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 1e-153 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 4e-87 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 5e-58 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 2e-51 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 3e-47 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 2e-44 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 5e-41 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 6e-36 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 2e-33 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 2e-30 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 2e-26 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 1e-25 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 3e-24 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 6e-24 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 2e-23 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 6e-23 | |
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 6e-22 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 1e-20 | |
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 9e-19 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 9e-19 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 2e-18 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 5e-17 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 6e-14 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 1e-13 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 1e-13 | |
| smart00823 | 86 | smart00823, PKS_PP, Phosphopantetheine attachment | 7e-11 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 1e-09 | |
| pfam00550 | 66 | pfam00550, PP-binding, Phosphopantetheine attachme | 1e-07 | |
| COG0183 | 392 | COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid | 6e-04 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 0.003 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 0.004 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 204/432 (47%), Positives = 280/432 (64%), Gaps = 14/432 (3%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN--FG 71
IAI+G+AC P + +FW+ L +G I E+ E RW K G
Sbjct: 2 PIAIVGMACRFPGAAD-PDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRG 60
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGA 131
FL D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAGY L+GS TGVF+GA
Sbjct: 61 GFLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGA 120
Query: 132 SGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHE 191
S SDY LL+ ++A+ G S A LANRISYF++ GPSL +DTACSSSLVA+H
Sbjct: 121 SSSDYLELLAR-DPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHL 179
Query: 192 ALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251
A QS+++GE ALVGG+NLIL P + + KAGMLS DG C+ FD +ADGYVRGEG +
Sbjct: 180 ACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGV 239
Query: 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311
++LK LS AL D D IYA+I+GSA+ +G++ G+TAP+ Q+ L+++A+ + +D +
Sbjct: 240 VVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDI 299
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
Y+E HGTGT LGDPIE++ L F ++ +GSVK+N+GHLEAA+G+
Sbjct: 300 DYVEAHGTGTPLGDPIEVEALAKVFGG----SRSADQP---LLIGSVKSNIGHLEAAAGL 352
Query: 372 TGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSS 431
G++K++L L++ +P +L+F N I ++S L + + W P R AGVSS
Sbjct: 353 AGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAP---AGPRRAGVSS 409
Query: 432 FGSGGTNAHVVL 443
FG GGTNAHV+L
Sbjct: 410 FGFGGTNAHVIL 421
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 602 bits (1555), Expect = 0.0
Identities = 245/618 (39%), Positives = 330/618 (53%), Gaps = 42/618 (6%)
Query: 10 NLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG-- 67
L + IAIIG+AC P G ++ +FW +LK+G I E+ RW D G
Sbjct: 1 QLIEPIAIIGMACRFP-GADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKS 59
Query: 68 -INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTG 126
+G FL D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAG L GS TG
Sbjct: 60 YSRWGGFLDDVDDFDALFFGISPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLRGSATG 119
Query: 127 VFIGASGSDYT-RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
VF GAS +DY LL+D P A GNS +V A RISY +GPS+ +DTACSSS
Sbjct: 120 VFAGASVADYLLLLLADDEAEPEYAIT--GNSSSVAAGRISYVLGLSGPSVTVDTACSSS 177
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH A QS++ GE AL GG+NL+L P ++ + GMLS DG CK FD +ADGYVR
Sbjct: 178 LVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVR 237
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEGA +++LK LS A D D IYA+I+GSA+ +G+SNGLTAPN Q+ ++++A ++
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAG 297
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
ID ++ Y+E HGTGT LGDPIE L Y + + C +GSVK+N+GHL
Sbjct: 298 IDPATVQYVEAHGTGTPLGDPIEANALGAV------YGEGAPA--QPCAIGSVKSNIGHL 349
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+GI G++K L LK+ +P +L+F N I D S + W R
Sbjct: 350 EAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATPWPTGGGP---R 406
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYV 485
AGVSSFG GGTNAHV+L E + I + P + VLSAKT +L
Sbjct: 407 RAGVSSFGFGGTNAHVILEEAPPRAESTI----------PSSPRLLVLSAKTAERLAATA 456
Query: 486 KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
+ + L + L SL D+ LQ GR RLA+V +R++L + L F K
Sbjct: 457 PRLADRLELQGGLL-SLADVAYTLQAGRPHFEHRLAVVANDREELEAGLRAFAAGKAK-- 513
Query: 546 QDKLDSFNESKNKI------DIATVINLAIKEKNFKKIAILWQSGININWS--LIDKKNI 597
++S K + + + + + + L
Sbjct: 514 ALSGVGADDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPE 573
Query: 598 RISLPTYPFSKYYYWLPK 615
I P YPF +
Sbjct: 574 VIFAPDYPF---LESIDF 588
|
Length = 1061 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 449 bits (1159), Expect = e-153
Identities = 166/431 (38%), Positives = 218/431 (50%), Gaps = 133/431 (30%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G++C P G + +FW +L G L
Sbjct: 1 IAIVGMSCRFP-GADDPEEFWDLLLAG--------------------------------L 27
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAG D L GS TGVF+G S S
Sbjct: 28 DDVDLFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGVSSS 87
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY S+ V DTACSSSLVA+H A Q
Sbjct: 88 DY--------------------SVTV------------------DTACSSSLVALHLACQ 109
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S+++GE AL GG+NLIL P + +AGMLS DG CKTFD +ADGYVRGEG +++L
Sbjct: 110 SLRSGECDMALAGGVNLILSPDTFVGLSRAGMLSPDGRCKTFDASADGYVRGEGVGVVVL 169
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
K LS AL D D I A+I+GSA+ +G+SNG+TAP+ Q +G
Sbjct: 170 KRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPAQLL---------------IG-- 212
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
S+ K NI GHLEAA+G+ G+
Sbjct: 213 -----------------------SV---KSNI----------------GHLEAAAGVAGL 230
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
+K++L LK+ +P +L+F N +I L++S L + L W P + R AGVSSFG
Sbjct: 231 IKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWPPP---GRPRRAGVSSFGF 287
Query: 435 GGTNAHVVLSE 445
GGTNAHV+L E
Sbjct: 288 GGTNAHVILEE 298
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 276 bits (707), Expect = 4e-87
Identities = 106/255 (41%), Positives = 138/255 (54%), Gaps = 18/255 (7%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFG 71
+ +AI G+ C P G+ +FW++L G I E + + G
Sbjct: 1 AEPVAITGMGCRFPGGVGP-EEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYG---- 55
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGS-NTGVFIG 130
FDA FF ISP EAE+MDPQQR+ LE +W+ +EDAG D + L GS TGVF+G
Sbjct: 56 ------FDFDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVG 109
Query: 131 ASGSDYT--RLLSDYIKIPVNAH-HCIGNSM-AVLANRISYFYNFTGPSLLIDTACSSSL 186
+ DY + L P + G M +V A RISY GPS+ +DTACSSSL
Sbjct: 110 SGSGDYAELQALDSA-GGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSL 168
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAG-MLSRDGICKTFDKNADGYVR 245
VA+H A++SI+ GE AL GG+ L P + AG +LS DG CK FD ADG+VR
Sbjct: 169 VALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVR 228
Query: 246 GEGAVMLMLKPLSVA 260
GEG ++LK LS A
Sbjct: 229 GEGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 5e-58
Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 28/348 (8%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKI-PVNAHHCIGN 156
+ E + + I DAG GV +G G + + V +
Sbjct: 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKA 70
Query: 157 SMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216
+ +I+ GP+ + AC+ SL A+ A +++NG+ L GG + P
Sbjct: 71 MFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPM 130
Query: 217 NTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
+ + + + +TFD ADG+V G+GA L+++ L AL +IYA I G+A
Sbjct: 131 DCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAA 190
Query: 277 THNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336
T +G G AP+ + ++A + + V + Y+ HGTGT +GD E++ L++ F
Sbjct: 191 TIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250
Query: 337 HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLN 396
+ + + K G+L +A+ + + + +L L++ +P S+
Sbjct: 251 GD------------KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSI------ 292
Query: 397 KNIKLDDSHLYIIDHLQDWVKPKY-ENKLRIAGVSSFGSGGTNAHVVL 443
H+ +D + + +LR A ++ FG GGTNA +VL
Sbjct: 293 --------HIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 2e-51
Identities = 153/566 (27%), Positives = 256/566 (45%), Gaps = 74/566 (13%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINF---G 71
IAI+G+A L+KFW ++ + I ++ W D ++ G
Sbjct: 9 IAIVGMASIFANSRY-LNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRG 67
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAG----YDSSKLSGSNTGV 127
FL +++ F+ F + P E D Q + L ++ + + DAG YD K+ G GV
Sbjct: 68 GFLPEVD-FNPMEFGLPPNILELTDISQLLSLVVAKEVLNDAGLPDGYDRDKI-GITLGV 125
Query: 128 FIGA--SGSDYTRL-------------LSD-------------YIKIPVNAH-HCIGNSM 158
G S S RL + D YI N+ +GN
Sbjct: 126 GGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGN-- 183
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
V++ RI+ ++ G + ++D AC+ SL A+ AL + G S + GG+ P
Sbjct: 184 -VISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMY 242
Query: 219 IAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH 278
+++ K + + + FD ++ G + GEG M+ LK L A D D IYA+IKG +
Sbjct: 243 MSFSKTPAFTTNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASS 302
Query: 279 NGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHS 338
+G+ + AP P Q+ L++A++++ + G IE HGTGT GD E GL + F
Sbjct: 303 DGKFKSIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQ 362
Query: 339 IITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
K++I LGSVK+ +GH ++ +G G++K +L L +K LP ++N N
Sbjct: 363 DNDQKQHI-------ALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPK 415
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNI 458
+ +++S Y+ + W++ + + R AG+SSFG GGTN H+VL EY+ +
Sbjct: 416 LDIENSPFYLNTETRPWMQ-REDGTPRRAGISSFGFGGTNFHMVLEEYSPKHQR------ 468
Query: 459 SINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNNKESLN----------ISLRDLTLQ 508
+ + + +A + L+ +K + L+ K +LR + +
Sbjct: 469 DDQYRQRAVAQTLLFTAANEKALVSSLKDWKNKLSAKADDQPYAFNALAVENTLRTIAVA 528
Query: 509 LQKGRQAMNCRLALVIFNRDDLLSQL 534
L RL V N D+L++ L
Sbjct: 529 L--------ARLGFVAKNADELITML 546
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 3e-47
Identities = 109/447 (24%), Positives = 177/447 (39%), Gaps = 57/447 (12%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + I GL P G N + +FW+ L G S I + +
Sbjct: 1 RRVVITGLGAVTPLG-NGVEEFWEALLAGRSGIRPI---TRFDASGFPSR-------IAG 49
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ D FD + + E MD + L + + + DAG D +L GV IG+
Sbjct: 50 EVPD---FDPEDY-LDRKELRRMDRFAQFALAAAEEALADAGLDPEELDPERIGVVIGSG 105
Query: 133 GSD-------YTRLLSD-YIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSS 184
Y LL ++ +MA A +++ GP+ + TAC+S
Sbjct: 106 IGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMA--AGQVAIRLGLRGPNYTVSTACAS 163
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDG-----ICKTFDKN 239
A+ +A + I+ G + + GG ++ P + LS + FDK+
Sbjct: 164 GAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKD 223
Query: 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL-- 297
DG+V GEGA +L+L+ L A IYA I G + + +TAP+P +
Sbjct: 224 RDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYH--ITAPDPDGEGAARAM 281
Query: 298 QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGS 357
+ A ++ + + YI HGT T L D E + +K F + K + + S
Sbjct: 282 RAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGE---HAKKVP-------VSS 331
Query: 358 VKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVK 417
K+ GHL A+G + +L L++ LP ++N + L D+V
Sbjct: 332 TKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDL------------DYVP 379
Query: 418 PKYENKLRIAGVS-SFGSGGTNAHVVL 443
+ +S SFG GG NA +V
Sbjct: 380 NEAREAPIRYALSNSFGFGGHNASLVF 406
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-44
Identities = 106/456 (23%), Positives = 175/456 (38%), Gaps = 65/456 (14%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGI 68
+ + I GL G N + + W L G S I + S
Sbjct: 2 MRRVVITGLGIVSSLG-NGVEEVWAALLAGKSGIRPITRFDASGLG-------------- 46
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
+I+ D + E MD ++ + + + +EDAG D+ GV
Sbjct: 47 --VKIAGEIKDLDDQI---AKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDMRVGVA 101
Query: 129 IGASGSDYTRLLSDYIKI-------PVNAHHCIG--NSMAVLANRISYFYNFTGPSLLID 179
IG+ + D + ++ ++A A ++ + GP+
Sbjct: 102 IGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLA--AGNVAIVFGLKGPNYTPV 159
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICK 234
TAC++ A+ +A++ I+ G++ + GG + P + LS +
Sbjct: 160 TACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASR 219
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ- 293
FDKN DG+V GEGA L+L+ L AL IYA I G T + +TAP P +
Sbjct: 220 PFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTT--SDAYHITAPAPDGEG 277
Query: 294 -SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEK 352
++ A ++ + + YI HGT T D E +K F ++ K+
Sbjct: 278 AIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVF------GEHAKSLP-- 329
Query: 353 CGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHL 412
+ S K+ GH A+G + +L L++ +P ++N N D +
Sbjct: 330 --VSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDN------PDPEAADL---- 377
Query: 413 QDWV-KPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
D V +R A +SFG GGTNA +V Y
Sbjct: 378 -DVVPNEARTGAVRAALSNSFGFGGTNASLVFKRYQ 412
|
Length = 412 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 5e-41
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
Query: 268 YAIIKGSAITHNGQ-SNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
YA+I+GSA+ +G NGLTAPN Q+ ++ A ++ +D + Y+E HGTGT LGDP
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
IE + LK F + +GSVK+N+GHLEAA+G+ G++K +L L++ +
Sbjct: 61 IEAEALKAVFGP--------GRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVI 112
Query: 387 PASLNF 392
P +LN
Sbjct: 113 PPTLNL 118
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-36
Identities = 99/445 (22%), Positives = 184/445 (41%), Gaps = 56/445 (12%)
Query: 15 IAIIGLACYLPKG--INTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG-INFG 71
+ I G+ P G + + +FW+ L++G S I + + + + G I G
Sbjct: 3 VVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRFDRGV------AGQIPTG 56
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIG 130
DI +DA I +D + L + + + DAG D ++ S GV +G
Sbjct: 57 ----DIPGWDAKRTGI-------VDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVG 105
Query: 131 ASGSDYT------RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-TGPSLLIDTACS 183
+ +L + + V+ + + A ++ GP AC+
Sbjct: 106 SGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTV--AGWVNILLLSSHGPIKTPVGACA 163
Query: 184 SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICKTFDK 238
++L A+ A+++I++G++ +VGG+ L + G LS + + FD+
Sbjct: 164 TALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDE 222
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298
DG+V EGA +L+L+ +AL IY + G+A T +G + A ++
Sbjct: 223 TRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIAR-AIR 281
Query: 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSV 358
A ++ + + L I HGT T D E + + + +
Sbjct: 282 TALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAG----------ALGAPLPVTAQ 331
Query: 359 KTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKP 418
K GH + A+G ++ + L++ +P + N ++ D HL ++ +D
Sbjct: 332 KALFGHSKGAAGALQLIGALQSLEHGLIPPTANL----DDVDPDVEHLSVVGLSRDLNL- 386
Query: 419 KYENKLRIAGVSSFGSGGTNAHVVL 443
K+R A V++FG GG+NA +VL
Sbjct: 387 ----KVRAALVNAFGFGGSNAALVL 407
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 128/457 (28%), Positives = 199/457 (43%), Gaps = 85/457 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
+ GL P G N + +FW+ L G S I + ++ +K +KD
Sbjct: 5 VTGLGAVTPLG-NGVEEFWENLLAGKSGIGPITR---FDASDLPVK-------IAGEVKD 53
Query: 77 IECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDY 136
FD + I EA MD + L + + +ED+G D + GV IG+
Sbjct: 54 ---FDPEDY-IDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGL 109
Query: 137 TRLLSDYIK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACS 183
+ +I IP+ I N MA A +IS Y GP+ + TAC+
Sbjct: 110 ETIEEQHIVLLEKGPRRVSPFFIPM----SIIN-MA--AGQISIRYGAKGPNHAVVTACA 162
Query: 184 SSLVAVHEALQSIKNGESSQALVGG----INLILHPSNTIAYY---KAGMLSR-----DG 231
+ A+ +A + I+ G++ + GG I + IA + KA LS +
Sbjct: 163 TGTHAIGDAFRLIQRGDADVMIAGGAEAAITPL-----GIAGFAAMKA--LSTRNDDPEK 215
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP- 290
+ FDK+ DG+V GEGA +L+L+ L A IYA I G ++ G + +TAP P
Sbjct: 216 ASRPFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMS--GDAYHITAPAPE 273
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ ++ A ++ I+ + YI HGT T LGD E + +K F H+ YK +
Sbjct: 274 GEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHA---YKLAVS 330
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L AA I I +L L++ +P ++N N + LD
Sbjct: 331 ---------STKSMTGHLLGAAGAIEAIF-TVLALRDGIVPPTINLDNPDPECDLD---- 376
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
Y+ + + + E K+ A +SFG GG NA +V
Sbjct: 377 YVPN------EAR-EAKIDYALSNSFGFGGHNASLVF 406
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-30
Identities = 109/446 (24%), Positives = 178/446 (39%), Gaps = 52/446 (11%)
Query: 25 PKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN------FGAFLKDIE 78
P G+ W+ L G S I +L E P I + + + A + E
Sbjct: 4 PLGVG-AESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSE 62
Query: 79 CFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFIGASGSDYT 137
FD F + E + + + + DA D S+ GV IG SG
Sbjct: 63 -FDPSDFAPTKRE----SRATHFAMAAAREALADAKLDILSEKDQERIGVNIG-SGIGSL 116
Query: 138 RLLSDYIKIPVNAHHCIGNSM---AVLANR----ISYFYNFTGPSLLIDTACSSSLVAVH 190
L+D +K H + +L N ++ + GPS TAC++ +
Sbjct: 117 ADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIG 176
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDKNADGYV 244
EA + IK GE+ + GG + P + + + L + FDK+ G+V
Sbjct: 177 EAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFV 236
Query: 245 RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL--LQKAWN 302
GEGA +L+L+ L AL IYA I+G + ++ +TAP+P + ++ A
Sbjct: 237 MGEGAGILVLEELEHALRRGAKIYAEIRGYGSS--SDAHHITAPHPDGRGARRCMENALK 294
Query: 303 ES-NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTN 361
+ NI++ + Y+ H T T +GD IE++ +K F K + S K
Sbjct: 295 DGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAP---------KLYVSSTKGG 345
Query: 362 LGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKY 420
LGH L AA + I+ IL L + +P ++N N + L +
Sbjct: 346 LGHLLGAAGAVESIVT-ILSLYEQIIPPTINLENPDAECDL----NLVQGK-----TAHP 395
Query: 421 ENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ +SFG GG N ++ ++Y
Sbjct: 396 LQSIDAVLSTSFGFGGVNTALLFTKY 421
|
Length = 421 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 120/458 (26%), Positives = 187/458 (40%), Gaps = 104/458 (22%)
Query: 29 NTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFF 85
N + WK L G S I + S D+ K +KD F+ +
Sbjct: 17 NDVESTWKNLLAGKSGIGPITHFDTS--------DLAVK-----IAGEVKD---FNPDDY 60
Query: 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG--------SDYT 137
+S EA MD + + + + +EDAG + ++ + GV IG SG +
Sbjct: 61 -MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEENADRIGVIIG-SGIGGLETIEEQHI 118
Query: 138 RLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHE 191
LL + +P+ I N MA A +S Y GP+ I TAC++ A+ +
Sbjct: 119 TLLEKGPRRVSPFFVPM----AIIN-MA--AGHVSIRYGAKGPNHSIVTACATGAHAIGD 171
Query: 192 ALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM-----LSRD-----GICKTFDKNAD 241
A + I G++ + GG + AG LS + FDK+ D
Sbjct: 172 AARLIAYGDADVMVAGGAE---AAITPLGI--AGFAAARALSTRNDDPERASRPFDKDRD 226
Query: 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP------- 290
G+V GEGA +L+L+ L A IYA + G +T H +TAP P
Sbjct: 227 GFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYH------MTAPAPDGEGAAR 280
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A ++ I+ + YI HGT T GD E Q +K F
Sbjct: 281 AMKL------ALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVF----------GEH 324
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
K + S K+ GH L AA + I +L ++++ +P ++N N ++ LD
Sbjct: 325 AYKVAVSSTKSMTGHLLGAAGAVEAIFS-VLAIRDQVIPPTINLDNPDEECDLD-----Y 378
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + + + E K+ A +SFG GGTNA +V Y
Sbjct: 379 VPN-----EAR-ERKIDYALSNSFGFGGTNASLVFKRY 410
|
Length = 411 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 68/349 (19%), Positives = 124/349 (35%), Gaps = 104/349 (29%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNS 157
+ E + + I DAG + GV +G +G
Sbjct: 7 ASELGFEAAEQAIADAGLSKGPI----VGVIVGTTGGSG--------------------E 42
Query: 158 MAVLANRISYFYNFT-GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216
+ A +++Y + GP+ ++ AC++ L A+ A+Q ++NG++ L GG
Sbjct: 43 FSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEEF---- 98
Query: 217 NTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
V G+GA +++ AL + A I +A
Sbjct: 99 ---------------------------VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAA 131
Query: 277 THNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336
T +G S + A + + +KA + + + Y+E HGTGT +GD +E+ +
Sbjct: 132 TFDGAS-MVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPD 190
Query: 337 --HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394
S + + GH A+G+ + +++L L+++ +P +
Sbjct: 191 GVRSP--------------AVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT----- 231
Query: 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ R + FG GGTNA VVL
Sbjct: 232 --------------------------PREPRTVLLLGFGLGGTNAAVVL 254
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 106/465 (22%), Positives = 180/465 (38%), Gaps = 77/465 (16%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K I + G+ P G + FW+ L G S I L + G
Sbjct: 4 KRIVVTGMGAVSPLG-CGVETFWQRLLAGQSGIRTLTD---------FPVGDL-ATKIGG 52
Query: 73 FLKDIE-----CFDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYDSSKLSGSN- 124
+ D+ FD + + P + MD IL + + + + AG+D L
Sbjct: 53 QVPDLAEDAEAGFDPDRY-LDPKDQRKMDR--FILFAMAAAKEALAQAGWDPDTLEDRER 109
Query: 125 TGVFIGASGSDYTRLLSDYIKI----------PVNAHHCIGNSMAVLANRISYFYNFTGP 174
T IG SG +++ ++ P + N MA A +S Y F GP
Sbjct: 110 TATIIG-SGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTN-MA--AGHVSIRYGFKGP 165
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----- 229
TAC++ + A+ +A + I++GE+ A+ GG + + + A LS
Sbjct: 166 LGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDA 225
Query: 230 -DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----H--NGQS 282
+ + FD++ DG+V GEGA +L+++ L AL A + G + H G
Sbjct: 226 PEQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPE 285
Query: 283 NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITY 342
+G A + A ++ I + ++ H T T +GD E+ +K F
Sbjct: 286 DGEGARRAMLI------ALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGH---- 335
Query: 343 KKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401
+ + S K+ GH L AA G+ I IL L+++ P +LN N +
Sbjct: 336 VSGLA-------VSSTKSATGHLLGAAGGVEAIFT-ILALRDQIAPPTLNLENPDPAA-- 385
Query: 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + + + + A + FG GG NA ++ +
Sbjct: 386 -EGLDVVANKARPMD-------MDYALSNGFGFGGVNASILFRRW 422
|
Length = 424 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 59/368 (16%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSG--SNTGVFIGAS----GSDYTRLLSDYIKIPVNAH 151
Q LE KT+ A + L+ ++ GV IG+S G + +L + +
Sbjct: 51 NQPSSLEDLTKTVVTAALKDAGLTPPLTDCGVVIGSSRGCQGQ-WEKLARQMYQGDDSPD 109
Query: 152 ---------HCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESS 202
+ + A+ A R GP L AC++ L A+ + ++ I+ G+
Sbjct: 110 EELDLENWLDTLPHQAAIAAARQ---IGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQ 166
Query: 203 QALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALN 262
+ + G + + P + + G L++ G FD+ +G V GEG +L+L+ +A
Sbjct: 167 RVIAGAVEAPITPLTLAGFQQMGALAKTG-AYPFDRQREGLVLGEGGAILVLESAELAQK 225
Query: 263 DHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTG 320
IY I G +T + ++AP P +S + Q+ S + + YI HGT
Sbjct: 226 RGAKIYGQILGFGLTCDAYH--MSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTA 283
Query: 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILC 380
T+L D E ++ F + + S K GH ASG G+ +L
Sbjct: 284 TRLNDQREANLIQALFPH-------------RVAVSSTKGATGHTLGASGALGVAFSLLA 330
Query: 381 LKNKKLPASLNF----YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGG 436
L++++LP + ++LN +V+ ++ L+ SFG GG
Sbjct: 331 LRHQQLPPCVGLQEPEFDLN------------------FVRQAQQSPLQNVLCLSFGFGG 372
Query: 437 TNAHVVLS 444
NA + L
Sbjct: 373 QNAAIALG 380
|
Length = 381 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 36/287 (12%)
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
S + G + A +S +AV +A + +++G + G + L A
Sbjct: 150 CSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSL 209
Query: 225 G-MLSRDGI------CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
G M S C+ FD++ DG++ GE ++L+ A YA + G ++
Sbjct: 210 GAMGSDRFADEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMR 269
Query: 278 HNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH 337
+ N P+ + +++ A + + + Y+ HGTG+ LGD E+ L +
Sbjct: 270 LDA--NRGPDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFASGL 327
Query: 338 SIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397
+ + + K+ GH +A+GI ++ +L ++ L S N
Sbjct: 328 A-------------HAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRN------ 368
Query: 398 NIKLDDSHLYIIDHLQDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
LD+ ID WV E+ ++R A SFG GG N +VL
Sbjct: 369 ---LDEP----IDERFRWVGSTAESARIRYALSLSFGFGGINTALVL 408
|
Length = 410 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 6e-23
Identities = 104/450 (23%), Positives = 193/450 (42%), Gaps = 57/450 (12%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + G+ P G NT+ WK L G S I + D N F
Sbjct: 4 RRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIEH--------FDTTNF--STRFAG 52
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+KD C + +S +A MD + + + ++D+G + ++ + GV IG S
Sbjct: 53 LVKDFNCEEY----MSKKDARKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIG-S 107
Query: 133 G--------SDYTRLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTAC 182
G + + L+ K P V+ + ++A +S GP++ I TAC
Sbjct: 108 GIGGLGLIEAGHQALVE---KGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTAC 164
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFD 237
++ L + A + I G++ + GG P + A LS + +D
Sbjct: 165 TTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWD 224
Query: 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ--SY 295
K+ DG+V G+GA M++L+ A IYA + G ++ G + +T+P+ +
Sbjct: 225 KDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMS--GDAYHMTSPSEDGSGGAL 282
Query: 296 LLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL 355
++ A ++ + +GY+ HGT T GD EI+G+K A + ++ +
Sbjct: 283 AMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGS---------KQVLV 333
Query: 356 GSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDW 415
S K+ GHL A+G + ++ L ++ +P ++N + + + +D ++ H
Sbjct: 334 SSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDID-----LVPHTARK 388
Query: 416 VKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
V+ + A +SFG GGTN ++ +
Sbjct: 389 VE-----SMEYAICNSFGFGGTNGSLIFKK 413
|
Length = 414 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 6e-22
Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 58/346 (16%)
Query: 125 TGVFIGASGSDYT--------------RLLSDYI--KIPVNAHHCIGNSMAVLANRISYF 168
TGV IG T R LS + +I +N MA A +S
Sbjct: 121 TGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILIN--------MA--AGHVSIR 170
Query: 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
Y F GP+ TAC++ ++ +A + I+ G++ + GG + + + ++ LS
Sbjct: 171 YGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALS 230
Query: 229 -RDGICKT-----FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQS 282
+ C T FD + DG+V GEGA +L+L+ L A IYA ++G ++ G +
Sbjct: 231 TKFNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMS--GDA 288
Query: 283 NGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HS 338
+ +T P+ + +L +A +S + + Y+ H T T LGD +E + +K F H+
Sbjct: 289 HHITQPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHA 348
Query: 339 IITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
S K GHL A+G + +L + + P +L NL +
Sbjct: 349 TS----------GGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTL---NLERP 395
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
+ D D K +R A +SFG GGTNA ++ +
Sbjct: 396 DPIFD------DGFVPLTASK-AMLIRAALSNSFGFGGTNASLLFT 434
|
Length = 437 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-20
Identities = 110/409 (26%), Positives = 172/409 (42%), Gaps = 71/409 (17%)
Query: 74 LKDIECFDAPFFKISPIEAE--------SMDPQQ--------RILLELSWKTIEDAGYDS 117
+K I FDA F + I E MDP++ ++ L+ + + ++DAG+
Sbjct: 33 IKKITLFDASDFPVQ-IAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLP 91
Query: 118 SKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHC------------IGNSMA-VLANR 164
+L GV ASG + I N+ C I +++ +L
Sbjct: 92 EELDAERFGV-SSASG------IGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGF 144
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
IS + GP+L TAC++ A+ EA+++I G + + LV G + P +
Sbjct: 145 ISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAM 204
Query: 225 GMLS-RDGICKT----FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHN 279
LS R+ K FDK+ DG+V GEGA L+L+ A IYA I G +
Sbjct: 205 KALSTRNDDPKKASRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIG--FGES 262
Query: 280 GQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSI 339
G +N +T+P P ++ A + + YI HGT T D E LK F S
Sbjct: 263 GDANHITSPAPEGPLRAMKAALEMAGNP--KIDYINAHGTSTPYNDKNETAALKELFGS- 319
Query: 340 ITYKKNIKNFYEKCGL-GSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNK 397
EK S K +GH L AA I ++ I+ +++ LP ++N +
Sbjct: 320 ----------KEKVPPVSSTKGQIGHCLGAAGAIEAVIS-IMAMRDGILPPTINQETPDP 368
Query: 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
LD YI + + + +L + +SFG GGTN V+ +
Sbjct: 369 ECDLD----YIPNVAR-------KAELNVVMSNSFGFGGTNGVVIFKKV 406
|
Length = 406 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 9e-19
Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 56/385 (14%)
Query: 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDS---SKLSGSNTGVFIGASGSDYTRLLSDY 143
++P ++ MD LL K + D G +L + GV IG S ++ +D
Sbjct: 188 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIG-SAMGGMKVFNDA 246
Query: 144 IK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
I+ +P A +G++M LA + + GP+ I TAC++S +
Sbjct: 247 IEALRISYRKMNPFCVPF-ATTNMGSAM--LAMDLGWM----GPNYSISTACATSNFCIL 299
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDG-----ICKTFDKNADGYVR 245
A I GE+ L GG + + P + LS+ + +D N DG+V
Sbjct: 300 NAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVM 359
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNE 303
GEGA +L+L+ L A NIYA G + T + +T P+P +L +KA +
Sbjct: 360 GEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYH--MTEPHPEGAGVILCIEKALAQ 417
Query: 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLG 363
S + + YI H T TK GD E Q L F + N S K+ +G
Sbjct: 418 SGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNPELRVN-----------STKSMIG 466
Query: 364 HLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN- 422
HL A+G + + ++ + ++N N + ++ V PK E
Sbjct: 467 HLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTK-----VL------VGPKKERL 515
Query: 423 KLRIAGVSSFGSGGTNAHVVLSEYN 447
+++A +SFG GG N+ ++ + Y
Sbjct: 516 DIKVALSNSFGFGGHNSSILFAPYK 540
|
Length = 540 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 9e-19
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 45/281 (16%)
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILH--PSNTIAYYKAGMLSRD----GIC 233
+AC+S A+ +A + I GE+ A+ GG+ + P A + M + + G C
Sbjct: 169 SACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 228
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--I 291
+ FDK+ DG+V GEG +++++ A NI A I G++IT +G + AP+P
Sbjct: 229 RPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFH--MVAPDPNGE 286
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNF 349
+ + + +A + + + ++ H TGT +GD E + + NA H Y
Sbjct: 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGHRPAVY------- 339
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
+ K+ LGH + A + IL +L L++ +P +LN NL+ I LD
Sbjct: 340 -------APKSALGHSVGAVGAVESILT-VLALRDGVIPPTLNLENLDPEIDLD------ 385
Query: 409 IDHLQDWV---KPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
V +P+ N R A +SFG GG N + Y
Sbjct: 386 -------VVAGEPRPGN-YRYAINNSFGFGGHNVALAFGRY 418
|
Length = 418 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 44/299 (14%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A+R++ + G + + TAC+S A+ +++I+ GE+ +AL + + I +
Sbjct: 155 ADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRF 214
Query: 222 YKAGMLSR-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
LS + K F K+ DG+V EGA L+L+ L A+ I I+ G
Sbjct: 215 SLLSALSTQNDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGE 274
Query: 277 T----HNGQSNGLTAPN--PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330
H +S+ P+ P + ++ A ++ + + YI HGT T D +E
Sbjct: 275 KADSFHRTRSS----PDGSPAIGA--IRAALADAGLTPEQIDYINAHGTSTPENDKMEYL 328
Query: 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPAS 389
GL F + +I + S K+ +GH L AA + + +L ++ +LP +
Sbjct: 329 GLSAVFGERL---ASIP-------VSSNKSMIGHTLTAAGAVEAVFS-LLTIQTGRLPPT 377
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGV--SSFGSGGTNAHVVLSEY 446
+N+ N + I LD V P R+ V +SFG GG NA +VL+
Sbjct: 378 INYDNPDPAIPLD-------------VVPNVARDARVTAVLSNSFGFGGQNASLVLTAE 423
|
Length = 425 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (204), Expect = 5e-17
Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 27/291 (9%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A +S ++F GP TAC++ + A+ +A++ I+N E+ AL GG ++ + +
Sbjct: 71 AGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGF 130
Query: 222 YKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
A LS + + FD DG+V GEGA +L+++ L AL A I G
Sbjct: 131 AAARALSTHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYG 190
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
+ + A + ++ A ++ I + ++ H T T +GD EI +K+
Sbjct: 191 TSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHL 250
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395
F + S K+ GHL A+G + +L L+++ +PA+LN N
Sbjct: 251 FGE-----------SNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENP 299
Query: 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ K L II + + A + FG G NA ++L +
Sbjct: 300 DPAAK----GLNII------AGNAQPHDMTYALSNGFGFAGVNASILLKRW 340
|
Length = 342 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-14
Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 32/275 (11%)
Query: 110 IEDAG-YDSSKLSGSNTGVFIGAS-GS-----DYTRLLSDYIKIPVNAHHCIGNSMA-VL 161
+EDAG L+ G+ G+S GS + +L + + A + M
Sbjct: 85 LEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYV-RMMPHTT 143
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A + F+ G + +AC+S + A ++IK G + L GG L P+ +
Sbjct: 144 AVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVF 202
Query: 222 ---YKAGMLSRDGICKT---FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
+ A D T FD N DG V GEGA L+L+ L A IYA I G
Sbjct: 203 DTLF-ATSTRNDAPELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFG 261
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
+G +T P ++ A ++ + +GY+ HGT T GD E Q A
Sbjct: 262 TNSDGAH--VTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQ----A 315
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370
++ F + + S+K+ GH A G
Sbjct: 316 TAAV---------FGARMPISSLKSYFGHTLGACG 341
|
Length = 405 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-13
Identities = 82/341 (24%), Positives = 132/341 (38%), Gaps = 71/341 (20%)
Query: 126 GVFIGASGSD-------YTRLLSDYIKIPVN---AHHCIGNSMAVLANRISYFYNFTGPS 175
GV +G S S Y R + +P + A +G+ LA+ + + +GP+
Sbjct: 98 GVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGS----LADFLRAYLGLSGPA 153
Query: 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGIN----LILHPSNTIAYYKAGMLSRDG 231
I TACSSS A + ++ G A+VGG++ L L+ N++ LS
Sbjct: 154 YTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCRLTLNGFNSL-----ESLS-PQ 207
Query: 232 ICKTFDKNADGYVRGEGA-VMLMLKPLS--VALNDHDNIYAIIKGSAITHNGQSNGLTAP 288
C+ F N DG GE A L+ + VAL + S+ H+ ++AP
Sbjct: 208 PCRPFSANRDGINIGEAAAFFLLEREDDAAVAL-------LGVGESSDAHH-----MSAP 255
Query: 289 NP-----IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYK 343
+P I +Q+A ++ + +GYI HGT T L D +E + A ++
Sbjct: 256 HPEGLGAILA---MQQALADAGLAPADIGYINLHGTATPLNDAMESR----AVAAV---- 304
Query: 344 KNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403
F + S K GH A+G L L++ P N + D
Sbjct: 305 -----FGDGVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTG------QPDP 353
Query: 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
+ V+ +R +SF GG N ++
Sbjct: 354 A-----LPPLYLVENAQALAIRYVLSNSFAFGGNNCSLIFG 389
|
Length = 392 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 83/358 (23%), Positives = 144/358 (40%), Gaps = 55/358 (15%)
Query: 110 IEDAGYDSSKLSGSNTGVFIGASG---------SDYTRLLSDYIKI-PVNAHHCIGNSM- 158
I DAG ++S TG+ G+ G +D R ++ P + +++
Sbjct: 83 IADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVS 142
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
A LA + G + I +AC++S + A++ I+ G+ GG L +
Sbjct: 143 ACLAT----PFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMS 197
Query: 219 IAYYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272
+ G LS + + +D N DG+V G +++++ L AL IYA I
Sbjct: 198 CLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIV 257
Query: 273 GSAITHNGQSNGLTAPNPIQQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQ 330
G T +G + AP+ +Q A ++ ID YI HGT T +GD E+
Sbjct: 258 GYGATSDGYD--MVAPSGEGAVRCMQMALATVDTPID-----YINTHGTSTPVGDVKELG 310
Query: 331 GLKNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389
++ F +K + + K+ GH A+G+ + +L +++ + S
Sbjct: 311 AIREVFG-------------DKSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPS 357
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
N L+ + I+ + +L +SFG GGTNA +V Y
Sbjct: 358 ANIEELDPQAA----GMPIV------TETTDNAELTTVMSNSFGFGGTNATLVFRRYK 405
|
Length = 406 |
| >gnl|CDD|214834 smart00823, PKS_PP, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700
+E D D F D+GLDS++AV ++ + L + +T ++D+PT + + +++
Sbjct: 30 AEAIDPDRPFRDLGLDSLMAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAEL 86
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Length = 86 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 44/281 (15%)
Query: 16 AIIGLACYLPKGINTLSKFWKILKKGSSVIEELNE---SRWIWPLEIDIKNKHKGINFGA 72
+ G+ P G+ ++WK + G S + + S + P + G
Sbjct: 4 VVTGIGVVAPNGLGV-EEYWKAVLDGRSGLGPITRFDPSGY--PARL------AG----- 49
Query: 73 FLKDIECFDAPFFKISPIEAE---SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
++ FDA + D R+ L + + DAG D + L + GV
Sbjct: 50 ---EVPDFDAA----EHLPGRLLPQTDRMTRLALAAADWALADAGVDPAALPPYDMGVVT 102
Query: 130 GAS--GSDYT-----RLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
++ G ++ +L S K P V+A+ AV +IS + GPS ++
Sbjct: 103 ASAAGGFEFGQRELQKLWS---KGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVA 159
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKT----F 236
+ L A+ +A + ++ G + + GG++ L P +A +G LS F
Sbjct: 160 EQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPF 218
Query: 237 DKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
D A GYV GEG +L+L+ + A +Y I G A T
Sbjct: 219 DAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAAT 259
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-07
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
++ D D D+GLDS++AV + ++ + + I + ++++PTL + ++
Sbjct: 15 DEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLGELAAYL 66
|
A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66 |
| >gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 23/79 (29%)
Query: 130 GASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAV 189
G G + R + +P + P++ ++ AC+S L AV
Sbjct: 63 GEQGQNIARQAALAAGLPGSV-----------------------PAVTVNRACASGLAAV 99
Query: 190 HEALQSIKNGESSQALVGG 208
A Q+I +GE+ L GG
Sbjct: 100 RLAAQAIASGEADVVLAGG 118
|
Length = 392 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P+ ++ C S L AV A QSI GE+ + GG+
Sbjct: 76 PATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGV 111
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P+ ++ C+S L AV A Q I+ GE+ + GG+
Sbjct: 75 PAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGV 110
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| KOG1202|consensus | 2376 | 100.0 | ||
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| KOG1394|consensus | 440 | 100.0 | ||
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.97 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 99.92 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.91 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.88 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.87 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.87 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.87 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.87 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.86 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.86 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.85 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.85 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.85 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.84 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.84 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.84 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.83 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK06158 | 384 | thiolase; Provisional | 99.83 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.82 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.82 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.82 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.81 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.8 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.8 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.79 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.78 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.78 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.78 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.77 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.76 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.74 | |
| KOG1390|consensus | 396 | 99.74 | ||
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.7 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.7 | |
| KOG1406|consensus | 408 | 99.68 | ||
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.67 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.66 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.65 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.65 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.65 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.63 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.62 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.6 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.55 | |
| KOG1389|consensus | 435 | 99.54 | ||
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.53 | |
| PRK06840 | 339 | hypothetical protein; Validated | 99.5 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.47 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 99.44 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 99.44 | |
| KOG1391|consensus | 396 | 99.43 | ||
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.4 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 99.4 | |
| KOG1392|consensus | 465 | 99.34 | ||
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.29 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 99.28 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 99.27 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 99.25 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.21 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 99.21 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 99.19 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 99.11 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 99.11 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.06 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 99.05 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 99.01 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 98.93 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 98.9 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 98.84 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 98.79 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 98.79 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.75 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.74 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 98.6 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.6 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 98.58 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 98.48 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.41 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 98.29 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 98.27 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 98.27 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 98.21 | |
| PRK05883 | 91 | acyl carrier protein; Validated | 98.18 | |
| PRK12449 | 80 | acyl carrier protein; Provisional | 98.14 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 98.12 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 98.12 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 98.12 | |
| PRK05350 | 82 | acyl carrier protein; Provisional | 98.07 | |
| PRK05691 | 4334 | peptide synthase; Validated | 98.06 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 98.03 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 97.99 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 97.99 | |
| TIGR00517 | 77 | acyl_carrier acyl carrier protein. S (Ser) at posi | 97.99 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 97.94 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 97.91 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 97.89 | |
| PRK05691 | 4334 | peptide synthase; Validated | 97.89 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 97.88 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 97.88 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 97.84 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 97.83 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 97.82 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 97.81 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 97.79 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 97.76 | |
| PRK08172 | 82 | putative acyl carrier protein IacP; Validated | 97.75 | |
| COG3433 | 74 | Aryl carrier domain [Secondary metabolites biosynt | 97.68 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 97.58 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 97.57 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 97.51 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 97.48 | |
| PTZ00171 | 148 | acyl carrier protein; Provisional | 97.43 | |
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 97.39 | |
| KOG1748|consensus | 131 | 97.31 | ||
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 97.22 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 97.01 | |
| PRK06508 | 93 | acyl carrier protein; Provisional | 96.82 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 96.64 | |
| TIGR01688 | 73 | dltC D-alanine--poly(phosphoribitol) ligase, subun | 96.64 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 96.59 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 96.51 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 96.5 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 96.4 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 96.37 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 96.23 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 96.22 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 95.73 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 95.4 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 95.23 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 94.75 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 94.6 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 93.82 | |
| KOG1178|consensus | 1032 | 93.24 | ||
| KOG1202|consensus | 2376 | 92.94 | ||
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 92.42 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 91.11 | |
| PF14573 | 96 | PP-binding_2: Acyl-carrier; PDB: 3CE7_A. | 89.04 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 85.58 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 85.2 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 83.51 |
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-110 Score=1024.13 Aligned_cols=574 Identities=41% Similarity=0.604 Sum_probs=518.3
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCC---CcccccccCcccCCCCCCCCChh
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG---INFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~---~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
+||||||+||||+ ++++++||++|.+|+++|+++|.+||++..++++.....+ .++|||+++++.||+.||||+|+
T Consensus 5 ~IAIiGm~~rfPg-a~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPr 83 (1061)
T COG3321 5 PIAIIGMACRFPG-ADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPR 83 (1061)
T ss_pred cEEEEeccccCCC-CCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHH
Confidence 3999999999997 6999999999999999999999999999888876653332 57999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN 170 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg 170 (831)
|+..|||||||+|+++|+|||||||.+..+.+++||||+|.+..+|......... ....+..+|+..+++++||||+||
T Consensus 84 EA~~mDPQqRllLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~-~~~~~~~~g~~~~~~a~Risy~l~ 162 (1061)
T COG3321 84 EAEAMDPQQRLLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDE-AEPEYAITGNSSSVAAGRISYVLG 162 (1061)
T ss_pred HHHhcCchHhHHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccc-cccceecccchhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999766543222 567788899999999999999999
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 171 FTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 171 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
|+||+++|||+|||||+|+|+||++|++|+||+||+|||+++.+|..++.+++.|+||++|+|++||.++|||++|||+|
T Consensus 163 l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls~~g~c~~fd~~adG~v~geG~g 242 (1061)
T COG3321 163 LSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAG 242 (1061)
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcCCCCcceecccCCCCEEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
+||||++++|+++||+|||+|+|+++|+||.+.++++|+..+|..++++||+++||+|++|+|||+|||||++||++|++
T Consensus 243 ~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yvEaHgTGT~lGDpiE~~ 322 (1061)
T COG3321 243 VVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEAN 322 (1061)
T ss_pred EEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEEEecCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeec
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~ 410 (831)
+|.++|+... ...+|.|||+|+||||++.|+|++++||++|+|+|++|||++||++|||+++|+.+||++++
T Consensus 323 aL~~v~~~~~--------~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~~l~~~~~np~i~~~~sp~~v~~ 394 (1061)
T COG3321 323 ALGAVYGEGA--------PAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPT 394 (1061)
T ss_pred HHHHHhccCC--------CCCcccccccccccccHHHHHHHHHHHHHHHhhhcCccCCcCCCCCCCcCCccccCCeEeec
Confidence 9999998643 12789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHHHHHH
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIE 490 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~~ 490 (831)
+.++|+... .||+|+||||||||+|+|+|||++++.. .......|++|+|||+++.+|+.++.+|++
T Consensus 395 ~~~~W~~~~---~prrAgvssfG~gGtNaHvIlEe~~~~~----------~~~~~~~p~~l~lSAk~~~~L~~~a~~l~~ 461 (1061)
T COG3321 395 EATPWPTGG---GPRRAGVSSFGFGGTNAHVILEEAPPRA----------ESTIPSSPRLLVLSAKTAERLAATAPRLAD 461 (1061)
T ss_pred CCcCCCCCC---CCceeeeeccCCCCCceEEEEeecCCcc----------cCCCCCCCceeeeecCCHHHHHHHHHHHHH
Confidence 999997642 7999999999999999999999997511 112234458999999999999999999999
Q ss_pred HHhcccccCccHHHHHHHHHhccccCCceEEEEeCCHHHHHHHHHHHHccCCcccccccccc----ccccccccHHHHHH
Q psy11395 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPMQDKLDSF----NESKNKIDIATVIN 566 (831)
Q Consensus 491 ~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 566 (831)
|++.+.... .|.|+||||+.+|++|++|+++|++|++||.++|+.+..++........... ........+...+.
T Consensus 462 ~l~~~~~~~-~l~dia~Tl~~gR~~~~~R~~~va~~~eel~~~L~~~~~~~~~~~~~~~~~~~~~~~vfvf~gqgsq~~~ 540 (1061)
T COG3321 462 RLELQGGLL-SLADVAYTLQAGRPHFEHRLAVVANDREELEAGLRAFAAGKAKALSGVGADDSGKKTVFVFPGQGSQWAG 540 (1061)
T ss_pred HHHhCcccc-hHHHHHHHHHhhhhhccceeEEEeCCHHHHHHHHHHHhcCCCCccceecccCCCCceEEEeCchHHHHHH
Confidence 999876543 8999999999999999999999999999999999999988754211110000 11112234566677
Q ss_pred HHHHhccHHHHHHHHhcCCccccccccc--ccccccCCCCcccccccccC
Q psy11395 567 LAIKEKNFKKIAILWQSGININWSLIDK--KNIRISLPTYPFSKYYYWLP 614 (831)
Q Consensus 567 ~~~~~~~l~~la~~~~~G~~idw~~l~~--~~~~v~LP~ypf~~~~~w~~ 614 (831)
+..+......+.+.|+.+....|..++. .+.++.+|.||| .+|++
T Consensus 541 mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~---l~~~~ 587 (1061)
T COG3321 541 MGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPF---LESID 587 (1061)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCcc---ccCcc
Confidence 7777788889999999999999999877 567889999999 77776
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-92 Score=912.28 Aligned_cols=509 Identities=27% Similarity=0.462 Sum_probs=444.8
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccC---CCCcccccccCcccCCCCCCCCC
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKH---KGINFGAFLKDIECFDAPFFKIS 88 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~---~~~~~~~~l~~~~~FD~~~f~i~ 88 (831)
.++||||||||+||++ .++++||++|.+|+++|+++|.+||+...+|++.... ...++|||+++++ ||+.||||+
T Consensus 6 ~~~IAIvGmg~~~P~a-~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~-FD~~~F~i~ 83 (2582)
T TIGR02813 6 DMPIAIVGMASIFANS-RYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVD-FNPMEFGLP 83 (2582)
T ss_pred CCCEEEEeeeeeCCCC-CCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccC-CCHhhcCCC
Confidence 4789999999999987 8999999999999999999999999887777654322 2356899999986 999999999
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHH--------------Hh-------------
Q psy11395 89 PIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRL--------------LS------------- 141 (831)
Q Consensus 89 ~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~--------------~~------------- 141 (831)
|+|++.|||||||+|+++|+||+||||... +++.+||||+|++.+++... ..
T Consensus 84 p~ea~~mDpqqrl~L~~a~eALedAG~~~~-~~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (2582)
T TIGR02813 84 PNILELTDISQLLSLVVAKEVLNDAGLPDG-YDRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEMLI 162 (2582)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhCCCCCC-CCCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhHHHhh
Confidence 999999999999999999999999999754 78899999999976543210 00
Q ss_pred -hhc--cCCCCcccccCcchhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh
Q psy11395 142 -DYI--KIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218 (831)
Q Consensus 142 -~~~--~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~ 218 (831)
... ......+.++|++.|++++||||+|||+||+++|+++||||++|||+||++|++|+||+|||||++..++|..+
T Consensus 163 ~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~~~ 242 (2582)
T TIGR02813 163 KKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMY 242 (2582)
T ss_pred hhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHHHH
Confidence 000 01234456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHH
Q psy11395 219 IAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298 (831)
Q Consensus 219 ~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~ 298 (831)
..|++.++||++++|||||.++|||++|||+|+||||++++|++|||+|||+|+|+++++||++.++++|+..+|.++|+
T Consensus 243 ~~fs~~~~lS~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~gq~~~i~ 322 (2582)
T TIGR02813 243 MSFSKTPAFTTNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQAKALK 322 (2582)
T ss_pred HHHHhccCcCCCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHH
Q psy11395 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 299 ~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~ 378 (831)
+||++|||+|+||+|||+|||||++||++|+.||.++|+.... ...+|+|||+|+||||+++|||++++||++
T Consensus 323 ~Al~~Agi~p~~I~yIeaHGTGT~~gD~~E~~Al~~vf~~~~~-------~~~~~~vgSvKs~iGH~~~AAG~a~lik~~ 395 (2582)
T TIGR02813 323 RAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDND-------QKQHIALGSVKSQIGHTKSTAGTAGMIKAV 395 (2582)
T ss_pred HHHHHcCCCHHHCCEEEecCCCCCCCCHHHHHHHHHHhccccc-------CCCCceeeccccccccchHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975321 125699999999999999999999999999
Q ss_pred HHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccc
Q psy11395 379 LCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNI 458 (831)
Q Consensus 379 l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~ 458 (831)
++|+|++|||++|+++|||.+++++++|+++++.++|.... ...+|+++||||||||+|+|+||++|+......
T Consensus 396 lal~~~~iPp~~~~~~pnp~~~~~~~~~~v~~~~~pw~~~~-~~~~r~a~vnsfGfGGtN~hvvlee~~~~~~~~----- 469 (2582)
T TIGR02813 396 LALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQRE-DGTPRRAGISSFGFGGTNFHMVLEEYSPKHQRD----- 469 (2582)
T ss_pred HHHhcCCcCCCCCCCCCCCCCCccccceeecCCcccCcccC-CCCccEEEEeCccCCCeeEEEEEeecCcccccc-----
Confidence 99999999999999999999999999999999999997432 246899999999999999999999985432110
Q ss_pred cccCCCCCCCeEEEeccCCHhHHHHHHHHHHHHHhcccc-cCccHHHHH--HHHHhccccCCceEEEEeCCHHHHHHHHH
Q psy11395 459 SINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNNKES-LNISLRDLT--LQLQKGRQAMNCRLALVIFNRDDLLSQLN 535 (831)
Q Consensus 459 ~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~~~l~~~~~-~~~~l~~~~--~tl~~~r~~~~~r~a~v~~~~~~l~~~l~ 535 (831)
........+.+|+|||+++++|...+++|.+++..... ....+.+++ ||+.. +.++.||++||++|.+||.++|+
T Consensus 470 -~~~~~~~~~~~~~lSA~~~~aL~~~l~~~~~~l~~~~~~~~~~~~~la~~~t~~~-~~~~~~R~a~va~~~~el~~~L~ 547 (2582)
T TIGR02813 470 -DQYRQRAVAQTLLFTAANEKALVSSLKDWKNKLSAKADDQPYAFNALAVENTLRT-IAVALARLGFVAKNADELITMLE 547 (2582)
T ss_pred -ccccccCCcceeeecCCCHHHHHHHHHHHHHHHhcccccccccHHHHHHHhhhcc-cccCCceEEEEECCHHHHHHHHH
Confidence 01112234678999999999999999999999865432 234578887 45543 35567999999999999999998
Q ss_pred HHH
Q psy11395 536 FFY 538 (831)
Q Consensus 536 ~~~ 538 (831)
...
T Consensus 548 ~a~ 550 (2582)
T TIGR02813 548 QAI 550 (2582)
T ss_pred HHH
Confidence 654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=670.29 Aligned_cols=439 Identities=37% Similarity=0.629 Sum_probs=393.6
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
.++|+|.||+.++|.. +++++||++|.+|.+.+++-| .||... .++- .+.-|-++|..+||+.||+..+++
T Consensus 10 ~edIvIsG~sgklPes-~nv~eF~~nLl~g~DmVtdd~-rrW~~G-~ygL------P~r~gKlKdL~kFDa~ff~vh~KQ 80 (2376)
T KOG1202|consen 10 QEDIVISGMSGKLPES-DNVKEFGDNLLAGVDMVTDDP-RRWEAG-LYGL------PKRSGKLKDLNKFDAGFFGVHPKQ 80 (2376)
T ss_pred CCcEEEeccCCCCCCc-ccHHHHhhhhhcccccccCCc-cccccc-ccCC------chhhcchhhhhhhcccccCcCccc
Confidence 5789999999999985 899999999999999998765 477432 2221 123466788999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
+..||||.||+||+.|||+-||||.|.++++++||||+|.+..+.......... .++.|..+|...+|.+|||||.|+|
T Consensus 81 a~~MDPq~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~-t~~Gy~mtgc~raMfaNRiSytFDf 159 (2376)
T KOG1202|consen 81 ANTMDPQLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPD-TVNGYSMTGCVRAMFANRISYTFDF 159 (2376)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCc-cccceeecccHHHHhhcceeEEEec
Confidence 999999999999999999999999999999999999999998877655554333 5788999999999999999999999
Q ss_pred CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 172 ~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+||++.+|++|+|++.||..|++.++.|+||.|||+|+++.+.|.....|.++|+||++|.|+.||..+|||+++||+++
T Consensus 160 qGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~a 239 (2376)
T KOG1202|consen 160 QGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVA 239 (2376)
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeeccCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQS-NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~-~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
++|.+.+.|+ ++||.|....+|.||.. .++|-|+++.|.++|++.|.++|++|+++-|||+|||||++|||.|++
T Consensus 240 vllqrk~~Ar----RvYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~sv~YvEAHGtGTkVGDpQEaN 315 (2376)
T KOG1202|consen 240 VLLQRKSLAR----RVYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTKVGDPQEAN 315 (2376)
T ss_pred EEEehhHHHH----HHHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCcccEEEEEeccCCCCCCChHHhh
Confidence 9999988875 58999999999999964 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC-CCCCCceee
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLYII 409 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~-~~~~~~~~~ 409 (831)
+|.++|+.. +..++.|||+|+|+||++.|||+..|.|.+++|++|.|||++||++|||+|+ +-+..+.|.
T Consensus 316 ~it~~fC~~---------Rt~pLLIGSvKSNMGHaEPASGv~alaKillsmE~glip~NLHy~tPNp~ip~L~dGrLkVV 386 (2376)
T KOG1202|consen 316 GITRFFCAT---------RTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVV 386 (2376)
T ss_pred hHHHHHhhc---------CCCceEeeeccccCCCCCccchHHHHHHHHHHHHhCcCCCccccCCCCCCcchhccceeEEe
Confidence 999999962 1267889999999999999999999999999999999999999999999996 788999999
Q ss_pred cccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHHHH
Q psy11395 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKY 488 (831)
Q Consensus 410 ~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~ 488 (831)
+++.||.. -+.++|||||||+|+||||+..++.. + ...+....+.++..|+|++++..+..+..
T Consensus 387 d~~lp~~G-------GivGiNSFGFGGsN~HviLks~~~~~-----P---~~tP~~~~~~l~~~sgRT~eAVeqll~~~ 450 (2376)
T KOG1202|consen 387 DRPLPWRG-------GIVGINSFGFGGSNAHVILKSNTKPK-----P---APTPHAGLLRLVRASGRTPEAVEQLLEQA 450 (2376)
T ss_pred cCCCCccC-------ceeeeeccccCCCceeEEeccCCCCC-----C---CCCCCCCcceeeecCCCCHHHHHHHHHHH
Confidence 99999953 36999999999999999999875432 0 11123445678889999999977665544
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-73 Score=640.91 Aligned_cols=399 Identities=23% Similarity=0.392 Sum_probs=350.5
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|++++++++ +|+... ....++|++++ ||+.+| ++++++
T Consensus 4 ~~VvItG~g~~~p~g-~~~~~~w~~L~~g~s~i~~~~--~~~~~~--------~~~~~~g~i~~---~~~~~~-~~~~~~ 68 (414)
T PRK08722 4 RRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIE--HFDTTN--------FSTRFAGLVKD---FNCEEY-MSKKDA 68 (414)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHhCCCeeeecC--cccccc--------CCCceeEEcCC---CChhHc-CCHHHH
Confidence 689999999999999 899999999999999999875 343211 12356777664 999888 899999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.||+++++++.++++||+|||+++...+..++|||+|++.+++..... ......++++.+++.+.++++++|+
T Consensus 69 ~~~d~~~~~~l~a~~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is 148 (414)
T PRK08722 69 RKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLS 148 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHH
Confidence 9999999999999999999999988777888999999998776542211 1122346677888999999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----CCCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----RDGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----~~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||+.||+.|+++|++|+||+|||||+|...+|..+..|..++.|+ +++.|||||.+++
T Consensus 149 ~~~gl~Gp~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~ 228 (414)
T PRK08722 149 IMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRD 228 (414)
T ss_pred HHhCCCCCccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997 4578999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++|||++++|+++|++||++|+|++.++|+.+.....|...++.++|++||+++||+|+||||||+|||||
T Consensus 229 G~~~gEGaaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt 308 (414)
T PRK08722 229 GFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTST 308 (414)
T ss_pred ceEeeceEEEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCEEEccCccC
Confidence 99999999999999999999999999999999999999876433344566779999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+.+|++|.+||+++|+... .++++|+|+|+++||+++|||++++++++++|++++|||++|+++|+|.+++
T Consensus 309 ~~~D~~E~~al~~~fg~~~---------~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~ 379 (414)
T PRK08722 309 PAGDVAEIKGIKRALGEAG---------SKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDI 379 (414)
T ss_pred CCCCHHHHHHHHHHhcccC---------CCCceeeCcccccccchHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCc
Confidence 9999999999999997521 1458999999999999999999999999999999999999999999999876
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+ +++++.+.| ...|++++|||||||+|+|+||++
T Consensus 380 ~----~v~~~~~~~------~~~~~~l~nsfGfGG~n~~lvl~~ 413 (414)
T PRK08722 380 D----LVPHTARKV------ESMEYAICNSFGFGGTNGSLIFKK 413 (414)
T ss_pred c----cCCCccccC------CCCCEEEEecccCCCceEEEEEec
Confidence 5 344444433 146899999999999999999975
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-72 Score=636.98 Aligned_cols=401 Identities=23% Similarity=0.359 Sum_probs=355.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCc-----ccCCCCCCCC
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDI-----ECFDAPFFKI 87 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~-----~~FD~~~f~i 87 (831)
++|+||||||++|.| .++++||++|++|++.++++|..+|.. ....++|++.+. +.||+.+| |
T Consensus 4 ~~V~ItG~g~~~p~g-~~~~~~w~~l~~G~s~i~~~~~~~~~~----------~~~~~~g~i~~~~~~~~~~fd~~~~-i 71 (424)
T PRK06333 4 KRIVVTGMGAVSPLG-CGVETFWQRLLAGQSGIRTLTDFPVGD----------LATKIGGQVPDLAEDAEAGFDPDRY-L 71 (424)
T ss_pred CCEEEEcceEECCCC-CCHHHHHHHHHcCCCeEEeCCcccccC----------CCCceEEEeccccccccccCChhHc-C
Confidence 689999999999998 899999999999999999998766521 123467777653 34999998 9
Q ss_pred ChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCC-CCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhH
Q psy11395 88 SPIEAESMDPQQRILLELSWKTIEDAGYDSSKL-SGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAV 160 (831)
Q Consensus 88 ~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~-~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~ 160 (831)
++++++.|||++++++.++++||+|||+++..+ +..++|||+|++.+++..+... .....+.++.+...+.+.
T Consensus 72 ~~~~~~~~d~~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
T PRK06333 72 DPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNM 151 (424)
T ss_pred CHHHHhhcCHHHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhH
Confidence 999999999999999999999999999998877 7789999999987776433221 111234556677788889
Q ss_pred HHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC------CCCCc
Q psy11395 161 LANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICK 234 (831)
Q Consensus 161 ~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~------~g~~~ 234 (831)
++++|++.|||+||+++|+++|+||+.||+.|+++|++|+||++||||+|.++++..+..|..++.++. ++.|+
T Consensus 152 ~a~~is~~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~ 231 (424)
T PRK06333 152 AAGHVSIRYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASR 231 (424)
T ss_pred HHHHHHHHhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999889888888988888874 46899
Q ss_pred cccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceE
Q psy11395 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314 (831)
Q Consensus 235 ~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~i 314 (831)
|||.+++|+++|||++++||+++++|+++|++||++|+|++.++|+.+.....|+..++.++|++||++|||+|+|||||
T Consensus 232 Pfd~~~~G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~dId~i 311 (424)
T PRK06333 232 PFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHL 311 (424)
T ss_pred CCCCCCCCeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 99999999999999999999999999999999999999999999988755556678899999999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCC
Q psy11395 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394 (831)
Q Consensus 315 e~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~ 394 (831)
|+|||||+.+|++|+.+|.++|+.. .+++++|+|+++||++||||++++++++++|++++|||++|+++
T Consensus 312 ~~hgtgt~~~D~~E~~al~~~fg~~-----------~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l~~g~ipp~~~~~~ 380 (424)
T PRK06333 312 NAHATSTPVGDLGEVAAIKKVFGHV-----------SGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLEN 380 (424)
T ss_pred eccCCCCccchHHHHHHHHHHhCCC-----------CCceeECcccchhhhHHHHHHHHHHHHHHHHhcCCcCCCCCCCC
Confidence 9999999999999999999999731 46889999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 395 LNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 395 ~n~~i~-~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
|+|.++ ++ ++.++.++|. .+++++|||||||+|+|+||+++.
T Consensus 381 ~~~~~~~~~----~~~~~~~~~~-------~~~al~~s~gfGG~n~~~il~~~~ 423 (424)
T PRK06333 381 PDPAAEGLD----VVANKARPMD-------MDYALSNGFGFGGVNASILFRRWE 423 (424)
T ss_pred CCCCccccc----cccCCCcccC-------cCEEEEeeecCCCeeEEEEEeccC
Confidence 999887 33 4566777773 478999999999999999999863
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=638.69 Aligned_cols=398 Identities=24% Similarity=0.359 Sum_probs=345.8
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|++++.+++ +|+... ...+++|.+++ |++..| ++++++
T Consensus 129 ~rVvITG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~--~f~~~~--------~~~~~ag~i~~---f~~~~~-l~~k~~ 193 (540)
T PLN02787 129 RRVVVTGMGVVSPLG-HDPDVFYNNLLEGVSGISEIE--RFDCSQ--------FPTRIAGEIKS---FSTDGW-VAPKLS 193 (540)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCcccccC--ccchhh--------CCccccccccc---cChhhc-CCHHHH
Confidence 689999999999998 899999999999999999885 443221 12345666654 777665 899999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCC---CCCCCcceeEEeccccchHHHHhh-----hccCCCCcccccCcchhHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSS---KLSGSNTGVFIGASGSDYTRLLSD-----YIKIPVNAHHCIGNSMAVLANR 164 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~---~~~~~~~gV~~G~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~a~r 164 (831)
+.||+++++++.++++||+|||++++ .+++.++|||+|++.+++..+... .....++++.++..+.++.+.+
T Consensus 194 r~md~~~~~al~Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ 273 (540)
T PLN02787 194 KRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAM 273 (540)
T ss_pred HhCCHHHHHHHHHHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHH
Confidence 99999999999999999999999764 567889999999987664322110 1112345666666777889999
Q ss_pred HHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----CCCCCccccCC
Q psy11395 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----RDGICKTFDKN 239 (831)
Q Consensus 165 is~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----~~g~~~~Fd~~ 239 (831)
|++.||++||+++|+++|+||+.||+.|+++|++|+||++||||+|..+.|..+..|..++.|+ +++.|||||.+
T Consensus 274 ia~~~gl~Gp~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~ 353 (540)
T PLN02787 274 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMN 353 (540)
T ss_pred HHHHhCCCCCccccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccC
Confidence 9999999999999999999999999999999999999999999999989999999999999887 45789999999
Q ss_pred CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 240 a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
+|||++|||++++|||++++|+++|++|||+|+|++.++|+.+.....|++.++.++|++||++|||+|+||+||++|||
T Consensus 354 rdGfv~GEGAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p~dIdyInaHGT 433 (540)
T PLN02787 354 RDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHAT 433 (540)
T ss_pred CCCcccccceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHHHCcEEEccCc
Confidence 99999999999999999999999999999999999999999876666778888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
||+.+|.+|.+||.++|+.. ..++|+|+|+++||++||||++++++++++|++++|||++|+++|+|.+
T Consensus 434 GT~~gD~~E~~Ai~~~Fg~~-----------~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~g~iPPt~n~~~pd~~~ 502 (540)
T PLN02787 434 STKAGDLKEYQALMRCFGQN-----------PELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGV 502 (540)
T ss_pred cCCCCCHHHHHHHHHHhCCC-----------CCceeeCCCCCcCCCcccchHHHHHHHHHHHhcCCcCCCCCCCCCCccC
Confidence 99999999999999999741 2478999999999999999999999999999999999999999999998
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+++ +.+....++| ..+++++|||||||+|+|+||+++
T Consensus 503 ~~~---~~v~~~~~~~-------~ir~aL~nSfGFGG~Naslvl~~~ 539 (540)
T PLN02787 503 DTK---VLVGPKKERL-------DIKVALSNSFGFGGHNSSILFAPY 539 (540)
T ss_pred Ccc---cccccccccC-------CcCEEEEeeecCCceeEEEEEEeC
Confidence 765 2222232222 468999999999999999999976
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=625.59 Aligned_cols=395 Identities=25% Similarity=0.340 Sum_probs=344.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|+++++++|..++.. .....+++|++. +.||+. ++++++
T Consensus 12 ~~VvItGig~~sp~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~--------~~~~~~~~g~i~--~~~d~~---~~~~~~ 77 (418)
T PRK07910 12 PNVVVTGIAMTTALA-TDAETTWKLLLDGQSGIRTLDDPFVEE--------FDLPVRIGGHLL--EEFDHQ---LTRVEL 77 (418)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeeEeCChhhhhc--------cCCCcceEEEec--cCcccc---CCHHHH
Confidence 789999999999998 899999999999999999987543211 111235677773 357763 789999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||++++++.++++||+|||++ .++..++||++|++.+++..... ......++++.++..+.+.++.+|+
T Consensus 78 ~~~d~~~~~~l~aa~~AledAg~~--~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is 155 (418)
T PRK07910 78 RRMSYLQRMSTVLGRRVWENAGSP--EVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVG 155 (418)
T ss_pred hhccHHHHHHHHHHHHHHHHcCCC--CCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHH
Confidence 999999999999999999999985 36678999999998765432221 1111234555566777888999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCC-CC-----CCCCCccccCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM-LS-----RDGICKTFDKNA 240 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~-ls-----~~g~~~~Fd~~a 240 (831)
+.++++||+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|..+++ ++ +++.|||||.++
T Consensus 156 ~~~~~~G~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~ 235 (418)
T PRK07910 156 LERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDR 235 (418)
T ss_pred HHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999998 77 568999999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||++++||+++++|+++|++||++|+|+++++||.+...+.|++.++.++|++||+++|++|+||+|||+||||
T Consensus 236 ~G~v~gEGaa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtg 315 (418)
T PRK07910 236 DGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATG 315 (418)
T ss_pred CCEeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCCEEEcCCcC
Confidence 99999999999999999999999999999999999999999877788888999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
|+.+|++|.+||+++|+. ..++|+++|+++||++||||++++++++++|++++|||++|+++|||.++
T Consensus 316 t~~~D~~E~~Al~~~fg~------------~~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~ 383 (418)
T PRK07910 316 TSVGDVAEGKAINNALGG------------HRPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEID 383 (418)
T ss_pred CCCCCHHHHHHHHHHhCC------------CCCceeCccccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Confidence 999999999999999974 23468999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 401 ~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
++- +.. .+| ...++++++|||||||+|+|+||+++
T Consensus 384 l~~----~~~--~~~-----~~~~~~al~nsfGfGG~N~slvl~~~ 418 (418)
T PRK07910 384 LDV----VAG--EPR-----PGNYRYAINNSFGFGGHNVALAFGRY 418 (418)
T ss_pred ccc----CCC--CCc-----CCCccEEEEeeecCCCeeEEEEEecC
Confidence 762 222 123 23578999999999999999999864
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=614.81 Aligned_cols=389 Identities=22% Similarity=0.300 Sum_probs=341.0
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|++++++++ +|+...+ ..++++.+.+ ||+.+ .+++++.
T Consensus 1 ~~VvItG~G~vsp~G-~~~~~~w~~L~~G~s~i~~~~--~~~~~~~--------~~~~~g~i~~---~~~~~-~~~~~~~ 65 (399)
T cd00832 1 RRAVVTGIGVVAPNG-LGVEEYWKAVLDGRSGLGPIT--RFDPSGY--------PARLAGEVPD---FDAAE-HLPGRLL 65 (399)
T ss_pred CCEEEEeeEEeCCCC-CCHHHHHHHHHhCCCeEeeCC--ccccccC--------CCceeEEeCC---cChhh-cCCHHHH
Confidence 579999999999998 899999999999999999874 4532211 1234555544 88776 5999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||++++++.++++||+|||+++..+++.++|||+|++.+++..... ......+.++..+..+.+.++++|+
T Consensus 66 ~~~d~~~~~~l~aa~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is 145 (399)
T cd00832 66 PQTDRMTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQIS 145 (399)
T ss_pred hhCCHHHHHHHHHHHHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999998888889999999998876642221 1112245566667777889999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC----CCCccccCCCCc
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD----GICKTFDKNADG 242 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~----g~~~~Fd~~a~G 242 (831)
+.||++||+++|+++|+||+.||++|+++|++|+ |++||||+|..++|..+..|..++.++.+ +.|+|||.+++|
T Consensus 146 ~~~gl~Gp~~ti~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~G 224 (399)
T cd00832 146 IRHGMRGPSGVVVAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAG 224 (399)
T ss_pred HHhCCCCCcccccchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCCC
Confidence 9999999999999999999999999999999999 99999999999999999999999999753 479999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
+++|||++++|||++++|+++|++||++|+|+++++|+.+.. ++..++.++|++||+++|++|+|||||++|||||+
T Consensus 225 ~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~---~~~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~ 301 (399)
T cd00832 225 YVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPGS---GRPPGLARAIRLALADAGLTPEDVDVVFADAAGVP 301 (399)
T ss_pred EeeeceEEEEEEeeHHHHHHCCCeEEEEEEeEEEcCCCCCCC---CCHHHHHHHHHHHHHHcCCCHHHccEEEeccCcCC
Confidence 999999999999999999999999999999999999998642 35889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCC
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLD 402 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~ 402 (831)
.+|+.|..+|+++|+. ..++|+|.|+++||+++|||++++++++++|++++|||++|+++|+|.++++
T Consensus 302 ~~D~~E~~al~~~fg~------------~~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l~~~~ipp~~n~~~~~p~~~l~ 369 (399)
T cd00832 302 ELDRAEAAALAAVFGP------------RGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLD 369 (399)
T ss_pred CCCHHHHHHHHHHhCC------------CCCceeCCCchhcchHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCcc
Confidence 9999999999999974 2468999999999999999999999999999999999999999999988765
Q ss_pred CCCceeecccccCccccccccccEEEEcccCCCCceeEEEE
Q psy11395 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 403 ~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
++..+.++ ..+|++++|||||||+|+|+||
T Consensus 370 ----~v~~~~~~-------~~~~~al~nsfgfGG~na~lvl 399 (399)
T cd00832 370 ----LVTGRPRP-------AALRTALVLARGRGGFNSALVV 399 (399)
T ss_pred ----cCCCcccC-------CCCCEEEEeccCCCCcceEEEC
Confidence 23332222 2578999999999999999986
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-70 Score=619.65 Aligned_cols=414 Identities=22% Similarity=0.309 Sum_probs=350.3
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccc----cCCCCccccccc---CcccCCCC
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKN----KHKGINFGAFLK---DIECFDAP 83 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~----~~~~~~~~~~l~---~~~~FD~~ 83 (831)
-+++||||||||++|.| .++++||++|++|+++++++|..||.+..+++... ......+++++. +++.||+.
T Consensus 4 ~~~~VvItG~g~~~p~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 82 (437)
T PLN02836 4 PTRRVVVTGLGLVTPLG-CGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEE 82 (437)
T ss_pred CCCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChH
Confidence 35789999999999998 89999999999999999999998886544321110 112235667663 45679999
Q ss_pred CCCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCC-CCCCcceeEEeccccchHHHHh------hhccCCCCcccccCc
Q psy11395 84 FFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSK-LSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGN 156 (831)
Q Consensus 84 ~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~-~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~ 156 (831)
+|.. .+.||+..+++++++++||+|||+.+.. .+..++|||+|++.+.+..... ......++++.+++.
T Consensus 83 ~~~~----~~~~~~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 158 (437)
T PLN02836 83 LWLN----SRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRI 158 (437)
T ss_pred Hhcc----ccccCHHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhh
Confidence 8855 3578999999999999999999997653 4678999999998665533221 111224667778888
Q ss_pred chhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC------CC
Q psy11395 157 SMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RD 230 (831)
Q Consensus 157 ~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls------~~ 230 (831)
+.++++++||+.||++||+++|+++|+||+.||+.|+++|++|+||++||||+|..+++..+..|...+.++ ++
T Consensus 159 ~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 238 (437)
T PLN02836 159 LINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPT 238 (437)
T ss_pred cccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999988888888888888776 34
Q ss_pred CCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Q psy11395 231 GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 231 g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~d 310 (831)
..|+|||.+++|+++|||++++||+++++|+++|++||++|+|++.++|+.+.....+...++.++|++||++|||+++|
T Consensus 239 ~~~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~d 318 (437)
T PLN02836 239 EASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPNQ 318 (437)
T ss_pred cccCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHhH
Confidence 68999999999999999999999999999999999999999999999998764333445677789999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASL 390 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~ 390 (831)
|||||+|||||+++|.+|.++|.++|+.... ...++|+++|+++||+++|||++++++++++|++++|||++
T Consensus 319 Id~ve~hgtgt~~~D~~E~~ai~~~~~~~~~--------~~~~~v~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~ 390 (437)
T PLN02836 319 VDYVNAHATSTPLGDAVEARAIKTVFSEHAT--------SGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTL 390 (437)
T ss_pred cCEEEccCCcCcCcCHHHHHHHHHHhccccc--------CCCCeeECCcccccccHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 9999999999999999999999999975321 13588999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 391 ~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
|+++|+|.++++..+. . ++ .....+++++|||||||+|+|+||+++|
T Consensus 391 n~~~~~p~~~~~~~~~----~--~~----~~~~~~~~l~nsfgfGG~na~lvl~~~~ 437 (437)
T PLN02836 391 NLERPDPIFDDGFVPL----T--AS----KAMLIRAALSNSFGFGGTNASLLFTSPP 437 (437)
T ss_pred CCCCCCCCCCcccCcc----c--CC----CCCCccEEEEecccCCCeeEEEEEecCC
Confidence 9999999998753222 1 11 1235789999999999999999998764
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=614.30 Aligned_cols=398 Identities=27% Similarity=0.420 Sum_probs=347.2
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|.| .++++||++|++|++++++++. |+.. .....++|++++ ||+++| ++++++
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~~~~~~~--~~~~--------~~~~~~~g~i~~---f~~~~~-~~~~~~ 66 (411)
T PRK07314 2 RRVVVTGLGAVSPLG-NDVESTWKNLLAGKSGIGPITH--FDTS--------DLAVKIAGEVKD---FNPDDY-MSRKEA 66 (411)
T ss_pred CcEEEEcceEECCCc-CCHHHHHHHHHhCCCcEEECCc--cccc--------CCCccEEEEeCC---cChhhc-CCHHHh
Confidence 689999999999998 8999999999999999998863 3211 112345676664 899888 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||+++.++++.++|||+|++.+++..... ......+.++.+++.+.+.++++|+
T Consensus 67 ~~~~~~~~l~~~aa~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is 146 (411)
T PRK07314 67 RRMDRFIQYGIAAAKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVS 146 (411)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHH
Confidence 9999999999999999999999999999999999999998765432211 1112234556667788899999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||+.||+.|+++|++|+||++||||+|.+++|..+..|...+.++. +..|+|||.++|
T Consensus 147 ~~~gl~Gp~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~d 226 (411)
T PRK07314 147 IRYGAKGPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRD 226 (411)
T ss_pred HHhCCCCccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCC
Confidence 999999999999999999999999999999999999999999999889988888888888774 578999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++||++++.|+++|++||++|+|++.++|+.+.....+...++..+|++||+++|++++||||||+|||||
T Consensus 227 G~~~geGAaavvL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~v~~hgtgt 306 (411)
T PRK07314 227 GFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTST 306 (411)
T ss_pred CEeEEceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEEccccCC
Confidence 99999999999999999999999999999999999999876544455677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+.+|.+|.++|.++|+... .+++|+++|+++||+++|||++++++++++|++++|||++|+++|++.+++
T Consensus 307 ~~~d~~E~~al~~~~~~~~----------~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~ 376 (411)
T PRK07314 307 PAGDKAETQAIKRVFGEHA----------YKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDL 376 (411)
T ss_pred ccccHHHHHHHHHHhcccC----------CCCeeECccchhchhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCc
Confidence 9999999999999997421 468999999999999999999999999999999999999999999998876
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+- ++.+.+ ...+|+++||||||||+|+|+||++|
T Consensus 377 ~~----~~~~~~-------~~~~~~al~~s~gfGG~n~~~vl~~~ 410 (411)
T PRK07314 377 DY----VPNEAR-------ERKIDYALSNSFGFGGTNASLVFKRY 410 (411)
T ss_pred cc----cCCccc-------CCCCCEEEEecccCCCceEEEEEecC
Confidence 52 222211 23678999999999999999999986
|
|
| >KOG1394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=561.54 Aligned_cols=403 Identities=25% Similarity=0.410 Sum_probs=356.8
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
.++|+|||||+++|.| +++.++|++|.+|+++|+.+....+ ....+...|.|.. |+-+-| +++..
T Consensus 23 ~rRVVITGmG~VTplG-~~v~~~w~~Ll~GesGI~~l~~~d~----------k~~p~~v~g~Ip~---f~~e~~-~s~~~ 87 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLG-NGVHTSWRNLLSGESGISSLEGPDY----------KSIPFTVAGKIPR---FSVEDY-VSKGD 87 (440)
T ss_pred ceeEEEeccceeecCC-CChHHHHHHhhccccCccccccccc----------ccCcchheeeccc---cccccc-cchhh
Confidence 5789999999999999 8999999999999999998753211 1122334555544 666655 79999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCC---CCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHH
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSS---KLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~---~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a 162 (831)
.+.|++...+++.++.+||+|||+.+. ..+..++||.+|++.++...+.. ......++|++.+..+.||.+
T Consensus 88 ~r~ms~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~a 167 (440)
T KOG1394|consen 88 ERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAA 167 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhccccc
Confidence 999999999999999999999999765 34567899999999987654332 222346899999999999999
Q ss_pred HHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC---CC--CCcccc
Q psy11395 163 NRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR---DG--ICKTFD 237 (831)
Q Consensus 163 ~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~---~g--~~~~Fd 237 (831)
+.||..+||+||+.++.|||++|..+|..|.+.|+.|++|++|+||+|..++|....+|.+.+.||. +. .+||||
T Consensus 168 g~vsm~~gl~GpnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD 247 (440)
T KOG1394|consen 168 GYVSMKYGLRGPNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFD 247 (440)
T ss_pred chhhhhhcCcCCchhhHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 33 799999
Q ss_pred CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 238 ~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
.++||||+|||+|++|||++|+|+++|.+|||+|.|+++++|..+..-+.|++.+...+|++||++|||.|+||+||++|
T Consensus 248 ~~RdGFVmGEGagvlvlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i~YvNAH 327 (440)
T KOG1394|consen 248 KKRDGFVMGEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDIDYVNAH 327 (440)
T ss_pred cCCCceeeccceeEEehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhcCeeecc
Confidence 99999999999999999999999999999999999999999999977777888999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
+|.|++||.+|.+||+++|++.. ....|.|.|+.|||++||+|.++-|-++++++++++||++|++.|++
T Consensus 328 ATST~~GD~aE~~Ai~~vf~~~~----------~~~~vsStKgaiGHLLGAAGavEAi~Tv~ai~~~~lpptlNlen~d~ 397 (440)
T KOG1394|consen 328 ATSTPLGDAAEAEAIKRVFGEHN----------IASKVSSTKGAIGHLLGAAGAVEAIFTVLAINDGVLPPTLNLENPDP 397 (440)
T ss_pred cccCcCchHHHHHHHHHHhccCC----------cccccccccchhhhhcccccchhhHhhhhhhhcCccCCcccccCCCc
Confidence 99999999999999999998643 22379999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
.++++ +++....+|.. ..++|+++.|||||||+|+.+++..+
T Consensus 398 ~~d~~----~~~~~~~~~~~---~~~~~valsNSFGFGGtNaSl~fa~~ 439 (440)
T KOG1394|consen 398 GVDLD----YVPLKASEKKG---GNKVRVALSNSFGFGGTNASLCFAKF 439 (440)
T ss_pred ccccc----ccccccccccc---cccceEEEecccccCCcchhheeeec
Confidence 87777 56666666643 24689999999999999999998765
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=602.25 Aligned_cols=394 Identities=24% Similarity=0.330 Sum_probs=347.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+|||||+++|.| .++++||++|++|+++|.+++ +|.... ....++|.++ .||+.+| ++++++
T Consensus 2 ~~v~ItG~g~vsp~G-~~~~~~~~~L~~G~s~i~~~~--~~~~~~--------~~~~~~g~i~---~f~~~~~-~~~~~~ 66 (406)
T PRK08439 2 KRVVVTGIGMINSLG-LNKESSFKAICNGECGIKKIT--LFDASD--------FPVQIAGEIT---DFDPTEV-MDPKEV 66 (406)
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCceEeCC--CccccC--------CCCceeEEcC---CcChhhc-CCHHHH
Confidence 689999999999999 899999999999999999875 332111 1234556554 4999888 899999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.||++++++++++++||+|||+++.+++..++||++|++.+++..... ......++++.++..+.++++++|+
T Consensus 67 ~~~~~~~~l~~~Aa~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is 146 (406)
T PRK08439 67 KKADRFIQLGLKAAREAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFIS 146 (406)
T ss_pred hhcCHHHHHHHHHHHHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHH
Confidence 9999999999999999999999999899999999999998765432211 1122345677788888999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a~ 241 (831)
+.||++||++++.++|+|++.||+.|+++|++|+||++||||+|..++|..+..|..++.|+. +..|+|||.+++
T Consensus 147 ~~~gl~Gp~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~ 226 (406)
T PRK08439 147 IEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRD 226 (406)
T ss_pred HHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984 568999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++|||++++|+++|++||++|+|++.++|+.+ ++.|++.++.++|++||+++|+ +||+|||+|||||
T Consensus 227 G~v~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~--~~~p~~~~~~~a~~~al~~ag~--~~i~~v~~hgtgt 302 (406)
T PRK08439 227 GFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANH--ITSPAPEGPLRAMKAALEMAGN--PKIDYINAHGTST 302 (406)
T ss_pred cEEeeCceEEEEEccHHHHHHCCCeEEEEEEeEEccCCCCC--CCCCCHHHHHHHHHHHHHHcCC--CccCEEEccCCcC
Confidence 99999999999999999999999999999999999988764 7889999999999999999999 7999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+.+|.+|..+|.++|+... ..++|+|+|+++||+++|||++++++++++|++++|||++|+++++|.+++
T Consensus 303 ~~~D~~E~~al~~~f~~~~----------~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~ 372 (406)
T PRK08439 303 PYNDKNETAALKELFGSKE----------KVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDL 372 (406)
T ss_pred CCCCHHHHHHHHHHhcccC----------CCCeEECcccccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCCc
Confidence 9999999999999997521 346799999999999999999999999999999999999999999999887
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+ +++.+.++ ..++++++|||||||+|+|+||+++
T Consensus 373 ~----~~~~~~~~-------~~~~~~l~nsfgfGG~n~~lvl~~~ 406 (406)
T PRK08439 373 D----YIPNVARK-------AELNVVMSNSFGFGGTNGVVIFKKV 406 (406)
T ss_pred c----cCCCcccc-------CCCCEEEEeeecCCCceEEEEEecC
Confidence 6 23333332 2578999999999999999999864
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=602.34 Aligned_cols=391 Identities=23% Similarity=0.341 Sum_probs=336.2
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|+++|+++|. |.... .....+++++.+ ||...+ +++++.
T Consensus 2 ~~VvITG~g~vtp~G-~~~~~~~~~L~~g~s~i~~~~~--~~~~~-------~~~~~~~~~v~~---~~~~~~-~~~~~~ 67 (405)
T PRK09116 2 RRVVVTGMGGVTALG-EDWQTIAARLKAGRNAVRRMPE--WDRYD-------GLNTRLAAPIDD---FELPAH-YTRKKI 67 (405)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCCEEeCCc--hhhcc-------CCCCceEEEecC---cChhHh-cCHHHH
Confidence 689999999999999 8999999999999999999974 32110 112356777665 665544 688999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCC-CCCCCCcceeEEeccccchHH------HHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDS-SKLSGSNTGVFIGASGSDYTR------LLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~-~~~~~~~~gV~~G~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
+.||+++++++.++++||+|||+.. ..++..++||++|++.+.... .........+.+..++..+.+.++++|
T Consensus 68 r~~~~~~~~al~aa~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 147 (405)
T PRK09116 68 RSMGRVSLMATRASELALEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNV 147 (405)
T ss_pred hhCCHHHHHHHHHHHHHHHHcCCCCccccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHH
Confidence 9999999999999999999999954 345678999999998665322 111112223455566677788899999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----CCCCCccccCCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----RDGICKTFDKNA 240 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----~~g~~~~Fd~~a 240 (831)
++.||++||+++|+++|+||+.||+.|+++|++|+||++||||+|. +++.....|..++.++ +...|+|||.++
T Consensus 148 s~~~~~~Gp~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~ 226 (405)
T PRK09116 148 GLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTRNDAPELTPRPFDANR 226 (405)
T ss_pred HHHhCCCCCcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccCCCCCCCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999998 5676667777776654 346899999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||++++|||++++|+++|++|||+|+|+++++|+.+ ++.|+..++.++|+++|+++|++|+||+||++||||
T Consensus 227 ~G~v~gEGa~~~vLe~~~~A~~rga~i~a~i~g~~~~~d~~~--~~~p~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtg 304 (405)
T PRK09116 227 DGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAH--VTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTA 304 (405)
T ss_pred CCEeeeccEEEEEEccHHHHHhCCCceEEEEEEEEEcCCCCc--CCCCCHHHHHHHHHHHHHHhCCCHHHcCEEECcCcc
Confidence 999999999999999999999999999999999999999865 788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC-
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI- 399 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i- 399 (831)
|+.+|++|..||+++|+. .++|+|+|+++||+++|||++++++++++|++++|||++|+++++|++
T Consensus 305 t~~~D~~E~~Ai~~~fg~-------------~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ippt~~~~~~~~~~~ 371 (405)
T PRK09116 305 TDRGDIAESQATAAVFGA-------------RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACG 371 (405)
T ss_pred CCCCCHHHHHHHHHHhCC-------------CCeeECcchhhcccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCc
Confidence 999999999999999973 367999999999999999999999999999999999999999999988
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+++ ++..+.++| +.+++++|||||||+|+++||+
T Consensus 372 ~l~----~v~~~~~~~-------~~~~~l~nsfGfGG~n~~lvl~ 405 (405)
T PRK09116 372 ALD----YIMGEAREI-------DTEYVMSNNFAFGGINTSLIFK 405 (405)
T ss_pred ccC----ccCCCCccC-------CCCEEEEeeecCCcccEEEEEC
Confidence 454 444444443 4578999999999999999985
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=598.92 Aligned_cols=390 Identities=23% Similarity=0.317 Sum_probs=334.8
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+|||||+++|.| .++++||++|++|+++|++++. |.. .....+++|.+ .||+..+ ++++..
T Consensus 2 ~rVvITG~G~vsp~G-~~~~~~w~~l~~G~sgi~~~~~--~~~--------~~~~~~~~g~~----~~~~~~~-~~~~~~ 65 (406)
T PRK07967 2 RRVVITGLGIVSSIG-NNQQEVLASLREGRSGITFSPE--FAE--------MGMRSQVWGNV----KLDPTGL-IDRKVM 65 (406)
T ss_pred CcEEEEcceEECCCC-CCHHHHHHHHHcCCCceeECCc--ccc--------cCCCCceEEEc----CCChhhc-CCHHHh
Confidence 689999999999999 8999999999999999998753 211 11123345544 2777655 678888
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh-------hccCCCCcccccCcchhHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD-------YIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
+.||+..++++.++.+||+|||+.+.++++.++|||+|++.+.+...... .....+.++.++..+.++++++|
T Consensus 66 ~~~~r~~~~a~~aa~~Al~dAGl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~i 145 (406)
T PRK07967 66 RFMGDASAYAYLAMEQAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACL 145 (406)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHH
Confidence 99999999999999999999999888888899999999987664322111 11224567778888999999999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC------CCCCCccccCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDGICKTFDKN 239 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls------~~g~~~~Fd~~ 239 (831)
++.||++||+++|+++|+||+.||+.|+++|++|+||++||||+|. +.+.....|..++.++ +++.|||||.+
T Consensus 146 s~~~~l~Gp~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~ 224 (406)
T PRK07967 146 ATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDAN 224 (406)
T ss_pred HHHHCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCC
Confidence 9999999999999999999999999999999999999999999997 4555566788888886 45689999999
Q ss_pred CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 240 a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
++|+++|||++++|||++++|+++|++||++|+|+++++||.+ ++.|++.++.++|++||+.++ + |||||++|||
T Consensus 225 r~G~v~gEGaa~lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~--~~~p~~~~~~~a~~~Al~~~~--~-~Idyi~aHgt 299 (406)
T PRK07967 225 RDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYD--MVAPSGEGAVRCMQMALATVD--T-PIDYINTHGT 299 (406)
T ss_pred CCceeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEECCCCCC--CCCCCHHHHHHHHHHHHhCCC--C-CccEEEcCCC
Confidence 9999999999999999999999999999999999999999986 788999999999999998654 5 9999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
||+.+|.+|.+||+++|+. ..++|+|+|+++||+++|||+.++++++++|++++|||++|+++++|.+
T Consensus 300 GT~~~D~~E~~Ai~~~fg~------------~~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~~~~iPpt~~~~~~~~~~ 367 (406)
T PRK07967 300 STPVGDVKELGAIREVFGD------------KSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQA 367 (406)
T ss_pred CCCCCCHHHHHHHHHHhCC------------CCCeeECcccccccCccccchHHHHHHHHHHhcCcCCCCCCCCCCCccc
Confidence 9999999999999999974 2468999999999999999999999999999999999999999999876
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
. .+.+..+..+| ..+|++++|||||||+|+|+||+++
T Consensus 368 ~----~~~~~~~~~~~------~~~~~~l~~sfgfGG~n~~lvl~~~ 404 (406)
T PRK07967 368 A----GMPIVTETTDN------AELTTVMSNSFGFGGTNATLVFRRY 404 (406)
T ss_pred c----CCCccCCCCcC------CCCCEEEEecccCCCeeEEEEEEec
Confidence 3 12223322222 2578999999999999999999986
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=599.81 Aligned_cols=396 Identities=27% Similarity=0.428 Sum_probs=346.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|.| .+.++||++|.+|++++.+++. |+... ....++|++++ ||+.+| |+++++
T Consensus 1 ~~v~ItG~g~~~p~g-~~~~~~~~~l~~g~s~~~~~~~--~~~~~--------~~~~~~g~i~~---f~~~~~-~~~~~~ 65 (407)
T TIGR03150 1 RRVVVTGLGAVTPLG-NGVEEFWENLLAGKSGIGPITR--FDASD--------LPVKIAGEVKD---FDPEDY-IDKKEA 65 (407)
T ss_pred CcEEEEcceEECCCc-CCHHHHHHHHHcCCCeeEECCc--ccccC--------CCCcEEEEeCC---cChhhc-CCHHHH
Confidence 479999999999998 8999999999999999998863 42211 12346677665 999999 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||+++++++..++|||+|++.+++..... ......+.++.+++.+.+.++++|+
T Consensus 66 ~~~~~~~~l~~~aa~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is 145 (407)
T TIGR03150 66 RRMDRFIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQIS 145 (407)
T ss_pred hhcCHHHHHHHHHHHHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHH
Confidence 9999999999999999999999999999999999999998765432221 1112245566677888899999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||+.||++|+++|++|+||++||||+|.+++|.....|...+.++. .+.|+|||.+++
T Consensus 146 ~~~gl~g~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~ 225 (407)
T TIGR03150 146 IRYGAKGPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRD 225 (407)
T ss_pred HHhCCCCcccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCC
Confidence 999999999999999999999999999999999999999999999899988888888888875 357999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++||+++++|+++|++||++|+|++.++|+.+.....|...++.++|++||+++|++++||||||+|||||
T Consensus 226 g~~~gEGAaalvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~ve~h~tgt 305 (407)
T TIGR03150 226 GFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTST 305 (407)
T ss_pred cEEEeceEEEEEEeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEEeCcCCCC
Confidence 99999999999999999999999999999999999999876444455677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+.+|.+|..++.++|+... .+++|+++|+++||+++|||++++++++++|++++|||++|+++|+|.+++
T Consensus 306 ~~~D~~E~~a~~~~~~~~~----------~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~ 375 (407)
T TIGR03150 306 PLGDKAETKAIKRVFGDHA----------YKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVVPPTINLDNPDPECDL 375 (407)
T ss_pred CCCCHHHHHHHHHHhccCC----------CCCceeCCcchhchhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Confidence 9999999999999997421 368999999999999999999999999999999999999999999999876
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+ +++.+..+| .+|++++|||||||+|+|+||+
T Consensus 376 ~----~v~~~~~~~-------~~~~~l~~s~gfgG~n~~~vl~ 407 (407)
T TIGR03150 376 D----YVPNEARER-------KIDYALSNSFGFGGHNASLVFK 407 (407)
T ss_pred c----ccCCCCccC-------CcCEEEEecccCCCceEEEEeC
Confidence 5 233333333 4689999999999999999984
|
FabB sequences should fall well below the noise cutoff of this model. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=601.52 Aligned_cols=420 Identities=48% Similarity=0.809 Sum_probs=379.4
Q ss_pred EEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccc-ccccc---CCCCcccccccCcccCCCCCCCCChh
Q psy11395 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEI-DIKNK---HKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 15 IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~-~~~~~---~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
|+|||||+++|.| .++++||++|.+|+++++++|.+||.....+ ++... .....++++++++..||+.+|+|+++
T Consensus 1 v~ItG~g~~~p~g-~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~ 79 (424)
T smart00825 1 IAIVGMSCRFPGA-DSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPR 79 (424)
T ss_pred CEEEEEEeeCCCC-CCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHH
Confidence 7999999999998 8999999999999999999998888643321 11111 12346788999888899999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN 170 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg 170 (831)
+.+.||++++|+++++.+||+|||+++.++++.++|||+|++..+|........ ....++.+.+.+.+..+++|+..||
T Consensus 80 ~~~~~~~~~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~i~~~lg 158 (424)
T smart00825 80 EAEAMDPQQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDP-EDIEGYAATGTARSFIANRISYFFD 158 (424)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCc-cccchhhhccchhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999888866554422 2455666777888899999999999
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 171 FTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 171 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
++||+++|+++|+|++.||..|+++|++|+||++||||++.++++..+..|...+.+++++.|+|||.+++|+++|||++
T Consensus 159 l~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAa 238 (424)
T smart00825 159 LRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVG 238 (424)
T ss_pred CCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceEE
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
++||+++++|+++|++||++|+|++.++++.+.+++.|+..++..+|++||+++|++++|||||++|||||+.+|..|.+
T Consensus 239 alVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~~h~tgt~~~d~~E~~ 318 (424)
T smart00825 239 VVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAE 318 (424)
T ss_pred EEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEEeeCCCCCCCCHHHHH
Confidence 99999999999999999999999999999987778889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeec
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~ 410 (831)
+|.++|+..... ..+++|+++|+++||+.+|||++++++++++|++++|||++|+++|++.++++..+|++++
T Consensus 319 al~~~~~~~~~~-------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 391 (424)
T smart00825 319 ALAAVFGQGRPR-------DGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTIPPTLHFETPNPHIDLEESPLRVPT 391 (424)
T ss_pred HHHHHHhccCCC-------CCceEEeccccccCCcccchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCceEccC
Confidence 999999753211 1457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+.++|.. ...++++++|||||||+|+|+||++|
T Consensus 392 ~~~~~~~---~~~~~~~l~~s~gfgg~n~~lvl~~~ 424 (424)
T smart00825 392 EATPWPA---TGRPRRAGVSSFGFGGTNAHVILEEA 424 (424)
T ss_pred CCcCCCC---CCCccEEEEeccCCCCceEEEEEecC
Confidence 9999962 23579999999999999999999975
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=598.77 Aligned_cols=419 Identities=48% Similarity=0.814 Sum_probs=378.9
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCccccc-cc-ccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEID-IK-NKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~-~~-~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
++||||||||++|+| .++++||++|.+|+++++++|..||.....+. .. .......+++++++++.||+.+|+|+++
T Consensus 1 ~~v~ItG~g~~~p~g-~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 79 (421)
T cd00833 1 EPIAIVGMACRFPGA-ADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPR 79 (421)
T ss_pred CCEEEEceeeECCCC-CCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHH
Confidence 479999999999998 88999999999999999999988886443321 00 1112345789999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN 170 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg 170 (831)
+++.||++++|+++++++||+|||+++.+++..++|||+|+..++|........ ..+.++...+...+..+++|++.||
T Consensus 80 ~~~~~~~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~i~~~~g 158 (421)
T cd00833 80 EAEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDP-DEIDAYAATGTSRAFLANRISYFFD 158 (421)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcc-cccCcccccCcchHHHHHHHHHHcC
Confidence 999999999999999999999999999988999999999999888876654422 2456777788888999999999999
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 171 FTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 171 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
++||+++|+++|+|++.||+.|+++|++|+||++||||++.+.++..+..+...+.+++.+.|+|||.+++|+++|||++
T Consensus 159 l~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAa 238 (421)
T cd00833 159 LRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVG 238 (421)
T ss_pred CCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCCCCCCCCCCCCCCCCeeeeceEE
Confidence 99999999999999999999999999999999999999999888888889999999999889999999999999999999
Q ss_pred EEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
++||++++.|+++|+++|++|+|++.++++.+.....|+..++.++|++||+++|++++||||||+|||||+.+|..|.+
T Consensus 239 alvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~ 318 (421)
T cd00833 239 VVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVE 318 (421)
T ss_pred EEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHH
Confidence 99999999999999999999999999999987777788999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeec
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~ 410 (831)
+|.++|+.... ...+++++++|+++||+.+|||++++++++++|+++.+||++|+++++|.++++.+++++++
T Consensus 319 al~~~f~~~~~-------~~~~~~v~s~k~~~Gh~~~aag~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 391 (421)
T cd00833 319 ALAKVFGGSRS-------ADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPT 391 (421)
T ss_pred HHHHHHhccCC-------CCCceeeecCcCccccchhhhHHHHHHHHHHHHhcCCcCCcCCCCCCCCCCCcccCCeEeeC
Confidence 99999975321 01457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEE
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
+.++|.... .+|++++|||||||+|+|+||
T Consensus 392 ~~~~~~~~~---~~~~~~~~sfgfgg~n~~~vl 421 (421)
T cd00833 392 EARPWPAPA---GPRRAGVSSFGFGGTNAHVIL 421 (421)
T ss_pred CCccCCCCC---CCeEEEEeCcCCCCceeEEeC
Confidence 999995321 579999999999999999986
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=590.58 Aligned_cols=395 Identities=26% Similarity=0.403 Sum_probs=349.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|+| .+.++||++|++|++++++++..++. .....+++++++ ||+. |.|+++++
T Consensus 1 ~~i~I~G~g~~~p~g-~~~~~~~~~l~~g~~~~~~~~~~~~~----------~~~~~~~~~i~~---~~~~-~~~~~~~~ 65 (406)
T cd00834 1 RRVVITGLGAVTPLG-NGVEEFWEALLAGRSGIRPITRFDAS----------GFPSRIAGEVPD---FDPE-DYLDRKEL 65 (406)
T ss_pred CcEEEECcceeCCCc-CCHHHHHHHHHcCCCeeEECCccccc----------CCCccEEEEcCC---CChh-hcCCHHHh
Confidence 479999999999998 89999999999999999998864321 112346677765 7766 67999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhh------ccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDY------IKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||+++.+++..++|||+|++.+++......+ ....++++.+++...+.++++|+
T Consensus 66 ~~~~~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 145 (406)
T cd00834 66 RRMDRFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVA 145 (406)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999999987754332211 11234566667777889999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC-----CCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~-----g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+|++.||+.|+++|++|+||++||||+|.+.+|..+..|...+.++.+ +.|+|||.+++
T Consensus 146 ~~lgl~g~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~ 225 (406)
T cd00834 146 IRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRD 225 (406)
T ss_pred HHhCCCCcccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998889999999999999876 47999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++||++.++|+++|++||++|+|++.++|+.+.....|+..++.++|+++|+++|++++||||||+|||||
T Consensus 226 g~~~geGA~a~vL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v~~h~tgt 305 (406)
T cd00834 226 GFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGTST 305 (406)
T ss_pred CEeeeccEEEEEEecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEecccccC
Confidence 99999999999999999999999999999999999999887555555689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+.+|.+|.++|.++|+.. ..+++|+++|+++||+++|||+++++|++++|+++++||++|+++|||..++
T Consensus 306 ~~~d~~E~~al~~~~~~~----------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 375 (406)
T cd00834 306 PLNDAAESKAIKRVFGEH----------AKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDL 375 (406)
T ss_pred ccccHHHHHHHHHHhccc----------CCCCceeCcchhhccchhhhhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Confidence 999999999999999752 1468999999999999999999999999999999999999999999996665
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEE
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
+ .+..+.++|. .|+++||||||||+|+|+||
T Consensus 376 ~----~~~~~~~~~~-------~~~~l~~s~g~gG~n~~~vl 406 (406)
T cd00834 376 D----YVPNEAREAP-------IRYALSNSFGFGGHNASLVF 406 (406)
T ss_pred c----ccCCCCcccc-------ccEEEEeeecCCceeeEEEC
Confidence 4 3445777783 37899999999999999996
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=585.90 Aligned_cols=401 Identities=24% Similarity=0.340 Sum_probs=343.8
Q ss_pred ccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccc----c--ccCCCCcccccccCcccCCCCCCCCChhhhccC
Q psy11395 22 CYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDI----K--NKHKGINFGAFLKDIECFDAPFFKISPIEAESM 95 (831)
Q Consensus 22 ~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~----~--~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~m 95 (831)
+++|.| .++++||++|.+|+++++++|..+|..+...+. . .......++|+++.. .||+.+|+..++ +
T Consensus 1 ~vs~~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~f~~~~~~~~~~----~ 74 (421)
T PTZ00050 1 VVTPLG-VGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQS-EFDPSDFAPTKR----E 74 (421)
T ss_pred CCCCCc-CCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcc-cCChhHcCCccc----C
Confidence 468999 899999999999999999999877644322211 0 111234678888653 599998876553 5
Q ss_pred CHHHHHHHHHHHHHHHHcCCC-CCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHHHH
Q psy11395 96 DPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRISYF 168 (831)
Q Consensus 96 dp~~rl~l~aa~~ALedAG~~-~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris~~ 168 (831)
|++++|++.++++||+|||++ +.+++..++||++|++.+++..... ......++++.+++.+.+.++++|++.
T Consensus 75 ~~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 75 SRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999998 7888889999999998876643221 112234567778888999999999999
Q ss_pred cCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC------CCCCCccccCCCCc
Q psy11395 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDGICKTFDKNADG 242 (831)
Q Consensus 169 lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls------~~g~~~~Fd~~a~G 242 (831)
|||+||+++|+++|+||+.||++|+++|++|+||++||||+|.+++|..+..|.+++.++ ++..|+|||.+++|
T Consensus 155 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G 234 (421)
T PTZ00050 155 HKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAG 234 (421)
T ss_pred hCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999988998888899988876 34689999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHH-cCCCCCCcceEEecCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE-SNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~-Agl~~~dId~ie~HgtGT 321 (831)
+++|||++++|||++++|+++|++|||+|+|+++++|+.+.....|+..++.++|++||++ |||+++||||||+|||||
T Consensus 235 ~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt 314 (421)
T PTZ00050 235 FVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHATST 314 (421)
T ss_pred EeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCccC
Confidence 9999999999999999999999999999999999999987666667889999999999999 999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+++|.+|.++|.++|+... ..+++|+|+|+++||+++|||++++++++++|++++|||++|+++|+|.+++
T Consensus 315 ~~~D~~E~~al~~~~~~~~---------~~~~~v~s~K~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~l 385 (421)
T PTZ00050 315 PIGDKIELKAIKKVFGDSG---------APKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDL 385 (421)
T ss_pred CCCCHHHHHHHHHHhcccc---------CCCceEECccccccccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCc
Confidence 9999999999999997521 1468999999999999999999999999999999999999999999998874
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+ +.....+|.. ..+|++++|||||||+|+|+||+++
T Consensus 386 ~-----~~~~~~~~~~----~~~~~~l~nsfgfgG~n~~lvl~~~ 421 (421)
T PTZ00050 386 N-----LVQGKTAHPL----QSIDAVLSTSFGFGGVNTALLFTKY 421 (421)
T ss_pred c-----ccCCcccCcC----CCCCEEEEeeecCCCeeEEEEEeCC
Confidence 4 3333333321 2468999999999999999999863
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-66 Score=585.68 Aligned_cols=390 Identities=24% Similarity=0.360 Sum_probs=343.5
Q ss_pred CCEEEEcccccccCCCCC---HHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCCh
Q psy11395 13 KDIAIIGLACYLPKGINT---LSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISP 89 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~---~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~ 89 (831)
.+|+|||||+++|.| .+ +++||++|.+|++++++++..+. .....++|++++ || +++
T Consensus 1 ~~v~ItG~g~v~p~g-~~~~~~~~~w~~l~~g~s~i~~~~~~~~-----------~~~~~~~g~i~~---~~-----~~~ 60 (407)
T cd00828 1 SRVVITGIGVVSPHG-EGCDEVEEFWEALREGRSGIAPVARLKS-----------RFDRGVAGQIPT---GD-----IPG 60 (407)
T ss_pred CCEEEECceeecCCC-CCCCCHHHHHHHHHcCCCceeeCCcccc-----------cCCccEEEEccC---CC-----cCH
Confidence 379999999999998 78 99999999999999999876431 112245666654 44 678
Q ss_pred hhhccC---CHHHHHHHHHHHHHHHHcCCCCCC-CCCCcceeEEeccccchHHHHhhhcc--CCCCcccccCcch--hHH
Q psy11395 90 IEAESM---DPQQRILLELSWKTIEDAGYDSSK-LSGSNTGVFIGASGSDYTRLLSDYIK--IPVNAHHCIGNSM--AVL 161 (831)
Q Consensus 90 ~ea~~m---dp~~rl~l~aa~~ALedAG~~~~~-~~~~~~gV~~G~~~~~~~~~~~~~~~--~~~~~~~~~g~~~--~~~ 161 (831)
++++.| ||+++++++++++||+|||+++++ ++..++|||+|++.+++......... ....++..+..+. +++
T Consensus 61 ~~~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (407)
T cd00828 61 WDAKRTGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTV 140 (407)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchH
Confidence 888888 999999999999999999999888 88899999999988776544332211 1345666667776 999
Q ss_pred HHHHHHHcCC-CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC-----CCCcc
Q psy11395 162 ANRISYFYNF-TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICKT 235 (831)
Q Consensus 162 a~ris~~lgl-~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~-----g~~~~ 235 (831)
+++|++.||+ +||+++|+++|+|++.||+.|+++|++|+||++||||+|.+. |..+..|..++.++.+ +.|+|
T Consensus 141 a~~is~~~gl~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~~~~~~~~~~p 219 (407)
T cd00828 141 AGWVNILLLSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRP 219 (407)
T ss_pred HHHHHHHhCcCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCCCCCCCcccCC
Confidence 9999999999 999999999999999999999999999999999999999987 8888899999999865 68999
Q ss_pred ccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEE
Q psy11395 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 236 Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie 315 (831)
||.+++|+++|||++++|||++++|+++|++||++|+|++.++|+.+..... +..++.++|++||++||++|+||||||
T Consensus 220 fd~~~~G~~~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~Agi~~~dId~i~ 298 (407)
T cd00828 220 FDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKAGLSLDDLDVIS 298 (407)
T ss_pred CcCCCCcEEeecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHcCCCHHHcCEEe
Confidence 9999999999999999999999999999999999999999999998765544 789999999999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 316 CHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 316 ~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
+|||||+.+|..|.++|.++|+... .+++|+|+|+++||+++|||++++++++++|+++++||++|++++
T Consensus 299 ~hgtgt~~~D~~E~~ai~~~~~~~~----------~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~l~~~~ipp~~~~~~~ 368 (407)
T cd00828 299 AHGTSTPANDVAESRAIAEVAGALG----------APLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDV 368 (407)
T ss_pred cccccCccccHHHHHHHHHHHhccC----------CCceeecccchhccchhhhhHHHHHHHHHHHhcCccCCCCCCCCC
Confidence 9999999999999999999997521 357899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEE
Q psy11395 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 396 n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
+|++++ .++.++.++|.. .++++++|||||||+|+|+||
T Consensus 369 ~~~~~~----~~~~~~~~~~~~-----~~~~al~~s~gfgG~n~~lv~ 407 (407)
T cd00828 369 DPDVEH----LSVVGLSRDLNL-----KVRAALVNAFGFGGSNAALVL 407 (407)
T ss_pred Cccccc----ccccCcCccCCC-----CccEEEEecccCCCcceEEEC
Confidence 998854 467778888842 158999999999999999986
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=572.73 Aligned_cols=396 Identities=19% Similarity=0.259 Sum_probs=329.0
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|++++++++..++.... ..........+++++++ ||...+ ++++..
T Consensus 2 ~~VvItG~g~vsp~g-~~~~~~w~~l~~g~s~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~ 74 (410)
T PRK07103 2 DEVVVTGVGVVSAIG-QGRPSFAAALLAGRHAFGVMRRPGRQVPD--DAGAGLASAFIGAELDS---LALPER-LDAKLL 74 (410)
T ss_pred CCEEEEcceEECCCc-CCHHHHHHHHHcCCCeEecCCcccccccc--cccccCCCceEEEEeCC---CChhhc-CCHHHh
Confidence 689999999999998 89999999999999999998753321000 00001112346777766 444433 688888
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh---h--ccCCCCcccccCcchhHHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD---Y--IKIPVNAHHCIGNSMAVLANRISY 167 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~~~~a~ris~ 167 (831)
+.||+.+++++.++++||+|||++ ..+..++|||+|++.......... . ....+.++.....+.+.++++|++
T Consensus 75 r~~~~~~~lal~Aa~eAl~dAgl~--~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~ 152 (410)
T PRK07103 75 RRASLSAQAALAAAREAWRDAALG--PVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSE 152 (410)
T ss_pred hcCCHHHHHHHHHHHHHHHhcCcC--CCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHH
Confidence 999999999999999999999994 456789999999875432211111 0 111234444555667789999999
Q ss_pred HcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-------CCCCCccccCCC
Q psy11395 168 FYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-------RDGICKTFDKNA 240 (831)
Q Consensus 168 ~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-------~~g~~~~Fd~~a 240 (831)
.||++||+++|+++|+|++.||++|+++|++|+||++||||++..+++.....|..++.++ +.+.|+|||.++
T Consensus 153 ~lgl~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~ 232 (410)
T PRK07103 153 QFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDR 232 (410)
T ss_pred HhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCC
Confidence 9999999999999999999999999999999999999999999888898888898888875 346899999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||++++||+++++|+++|++||++|+|+++++|+.+ .+.|+..++.++|++||+++|++|+||||||+||||
T Consensus 233 dG~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~--~~~p~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtg 310 (410)
T PRK07103 233 DGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANR--GPDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTG 310 (410)
T ss_pred CCeeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCC--CCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCC
Confidence 999999999999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC-CCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL-NKNI 399 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~-n~~i 399 (831)
|+.+|+.|.++| |+.. ..+++|+++|+++||+.+|||++++++++++|++++|||++|+++| ++.+
T Consensus 311 t~~~D~~E~~al---~~~~----------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~ 377 (410)
T PRK07103 311 SPLGDETELAAL---FASG----------LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERF 377 (410)
T ss_pred CCCCCHHHHHHH---hcCC----------CCCCeEECCCcccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCc
Confidence 999999999999 3211 1458899999999999999999999999999999999999999987 6554
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++- ..+. + ....+++++|||||||+|+|+||++
T Consensus 378 ~~v------~~~~--~-----~~~~~~~l~~s~gfGG~n~~~vl~~ 410 (410)
T PRK07103 378 RWV------GSTA--E-----SARIRYALSLSFGFGGINTALVLER 410 (410)
T ss_pred Ccc------CCCC--c-----CCCCCEEEEecccCCCceEEEEEeC
Confidence 322 1111 1 2357899999999999999999974
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=557.41 Aligned_cols=371 Identities=22% Similarity=0.362 Sum_probs=312.9
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+|||||+++|.| . .++||++|++|+++|.+++. |.. . ..|...+++..+
T Consensus 2 ~rVvITG~G~vsp~G-~-~~~~~~~l~~G~sgi~~~~~--~~~---~------------------~~~~~~~~~~~~--- 53 (381)
T PRK05952 2 MKVVVTGIGLVSALG-D-LEQSWQRLLQGKSGIKLHQP--FPE---L------------------PPLPLGLIGNQP--- 53 (381)
T ss_pred CeEEEEeeEEECccc-C-HHHHHHHHHcCCCCeEeCCc--ccc---c------------------ccccceeecccc---
Confidence 479999999999999 7 99999999999999998764 210 0 001111111111
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhh---cc------CCCCcccccCcchhHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDY---IK------IPVNAHHCIGNSMAVLAN 163 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~---~~------~~~~~~~~~g~~~~~~a~ 163 (831)
..++ ++...++.+||+|||+++. ..++||++|++.+......... .. ..+.+..+...++|.+++
T Consensus 54 ~~~~---~~~~~a~~~Al~dagl~~~---~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~ 127 (381)
T PRK05952 54 SSLE---DLTKTVVTAALKDAGLTPP---LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAI 127 (381)
T ss_pred cccc---HHHHHHHHHHHHhcCCCCC---CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHH
Confidence 1133 3556889999999999753 3689999999866533222111 00 123445566778899999
Q ss_pred HHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc
Q psy11395 164 RISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243 (831)
Q Consensus 164 ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~ 243 (831)
+|++.|+++||+++++++|+||+.||..|+++|++|+||++||||+|..++|..+..|..++.++.++ |+|||.+++|+
T Consensus 128 ~ia~~~~~~Gp~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~~~-~rPfd~~r~G~ 206 (381)
T PRK05952 128 AAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAKTG-AYPFDRQREGL 206 (381)
T ss_pred HHHHHhCCCCccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCCCC-CCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999989999999999999999764 99999999999
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCC
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKL 323 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~ 323 (831)
++|||++++||+++++|+++|++||++|+|++.++|+.+.....|+..++.++|++||+++||+|+||||||+|||||+.
T Consensus 207 v~gEGaa~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~ 286 (381)
T PRK05952 207 VLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRL 286 (381)
T ss_pred cccccEEEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCC
Confidence 99999999999999999999999999999999999998877777888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCC
Q psy11395 324 GDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403 (831)
Q Consensus 324 gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~ 403 (831)
+|.+|.++|.++|+ ..++|+++|+++||+++|||++++++++++|++++|||++|+++|++++++.
T Consensus 287 ~D~~E~~al~~~fg-------------~~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~v- 352 (381)
T PRK05952 287 NDQREANLIQALFP-------------HRVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPEFDLNFV- 352 (381)
T ss_pred CcHHHHHHHHHHcC-------------CCCeeecchhhhccChHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcC-
Confidence 99999999999996 2478999999999999999999999999999999999999999886654432
Q ss_pred CCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 404 ~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+++ ....+++++|||||||+|+|+||++
T Consensus 353 ------~~~~-------~~~~~~~l~~s~gfGG~na~lvl~~ 381 (381)
T PRK05952 353 ------RQAQ-------QSPLQNVLCLSFGFGGQNAAIALGK 381 (381)
T ss_pred ------CCcc-------cCCCCEEEEeeecCCCeeEEEEEeC
Confidence 1111 2357899999999999999999974
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=550.35 Aligned_cols=397 Identities=26% Similarity=0.385 Sum_probs=343.3
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
+.++|+|+|||.++|.| ++.+++|++|..|++++..++. |+. .....+.++.+.+ | +.+ +.++
T Consensus 1 ~~~rvviTG~g~vs~lG-~~~~~~~~~l~~g~sgi~~~~~--~~~--------~~~~~~~~~~i~~---~-~~~--~~~~ 63 (412)
T COG0304 1 SMRRVVITGLGIVSSLG-NGVEEVWAALLAGKSGIRPITR--FDA--------SGLGVKIAGEIKD---L-DDQ--IAKK 63 (412)
T ss_pred CCceEEEecceeeeccc-CCHHHHHHHHhcCCCCCCcccc--ccc--------cCCCCcccccccc---c-ccc--cchH
Confidence 35789999999999999 8999999999999999887653 321 1111233444433 4 233 5777
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCC-cceeEEeccccchHHHHh-------hhccCCCCcccccCcchhHHH
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGS-NTGVFIGASGSDYTRLLS-------DYIKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~-~~gV~~G~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~a 162 (831)
+.+.||+.++|.+.++.+||+|||+. ...... ++||++|++.++...... ......+.++..+..+.++++
T Consensus 64 ~~~~~d~~~~~a~~Aa~eAl~dAgl~-~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a 142 (412)
T COG0304 64 ERRFMDRFSQLAVVAAVEALEDAGLD-NELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAA 142 (412)
T ss_pred HhhcccHHHHHHHHHHHHHHHHcCCC-cccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHH
Confidence 88899999999999999999999998 333323 899999999876653211 212224788889999999999
Q ss_pred HHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC-----CCCcccc
Q psy11395 163 NRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICKTFD 237 (831)
Q Consensus 163 ~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~-----g~~~~Fd 237 (831)
+.++..||++||++++.++|+||..||..|++.|+.|++|++||||+|..+++.....|..++.|+++ ..|||||
T Consensus 143 ~~vs~~~g~~G~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd 222 (412)
T COG0304 143 GNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFD 222 (412)
T ss_pred HHHHHHhCCCCCcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 4899999
Q ss_pred CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 238 ~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
+++|||++|||+|++|||++++|+++|.+||++|.|++.+.|+.+.+...|.+++..++|+.||++||++|+|||||.+|
T Consensus 223 ~~RdGfv~gEGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~idYinaH 302 (412)
T COG0304 223 KNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAH 302 (412)
T ss_pred CCCCCEEEecceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHCCEEeCC
Confidence 99999999999999999999999999999999999999999999977777779999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
||||+.+|..|..+|+++|++.. ..++|.|.|+.+||+.||+|..+.|-++++|+++.+||++|+++++|
T Consensus 303 gTsT~~nD~~E~~ai~~vfg~~~----------~~~~vsstKs~tGH~lGAaGaveai~~~l~l~~g~ippt~n~~~~dp 372 (412)
T COG0304 303 GTSTPANDKAESLAIKRVFGEHA----------KSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDP 372 (412)
T ss_pred CccCCCccHHHHHHHHHHhcccc----------cCceeeecccccccChhhHHHHHHHHHHHHHhcCCcCCCCCcCCCCc
Confidence 99999999999999999998632 34789999999999999999999999999999999999999999998
Q ss_pred C-CCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 398 N-IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 398 ~-i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+ ++++ +++++.+. ...+.++.|||||||+|+.+|+.++
T Consensus 373 ~~~~l~----~v~~~~~~-------~~~~~~lsnsfGFGG~Na~lv~~~~ 411 (412)
T COG0304 373 EAADLD----VVPNEART-------GAVRAALSNSFGFGGTNASLVFKRY 411 (412)
T ss_pred cccccc----ccCCcccc-------cceeEEEecccccCCcceEEEEecC
Confidence 5 3333 34443332 2378999999999999999999876
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=549.73 Aligned_cols=402 Identities=21% Similarity=0.309 Sum_probs=331.7
Q ss_pred CCCCcccCCCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccC
Q psy11395 1 MEINNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECF 80 (831)
Q Consensus 1 ~~~~~~~~~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~F 80 (831)
|+.-||+.+ +.+|+|||||+++|.| .+.++||++|.+|++++++++ +|... ....+++|.++ .|
T Consensus 1 ~~~~~~~~~--~~~VvITG~G~vs~~G-~~~~~~~~~L~~G~s~i~~~~--~~~~~--------~~~~~~~g~~~---~~ 64 (425)
T PRK06501 1 MTAYRDHLG--RPIVAVTGMGVVTSLG-QGKADNWAALTAGESGIHTIT--RFPTE--------GLRTRIAGTVD---FL 64 (425)
T ss_pred CccccccCC--CcCEEEEeeeEECCCC-CCHHHHHHHHHcCCCceEcCC--ccccc--------CCCCceEEEEe---ec
Confidence 555566553 3579999999999999 899999999999999999875 34211 12235666653 12
Q ss_pred CCCCCCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCC--------------CCcceeEEeccccc---hHHHHhhh
Q psy11395 81 DAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLS--------------GSNTGVFIGASGSD---YTRLLSDY 143 (831)
Q Consensus 81 D~~~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~--------------~~~~gV~~G~~~~~---~~~~~~~~ 143 (831)
+..+ ...+++.+++.+.++++||+|||+...++. ..++|++.+..... |..+....
T Consensus 65 ~~~~-------~~~~~~~~~~~~~aa~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (425)
T PRK06501 65 PESP-------FGASALSEALARLAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAA 137 (425)
T ss_pred cccc-------ccccCHHHHHHHHHHHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhc
Confidence 2222 224678899999999999999999643322 35678877765443 23222211
Q ss_pred ccCCCCcccccCcchhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHH
Q psy11395 144 IKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYK 223 (831)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~ 223 (831)
. ....+..+.....+.++++|+..||++||+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|..
T Consensus 138 ~-~~~~~~~~~~~~~~~~a~~i~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~ 216 (425)
T PRK06501 138 R-GGRFDALHERFQFGSIADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSL 216 (425)
T ss_pred C-cccCChhhhhhcccHHHHHHHHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHH
Confidence 1 112222345556778999999999999999999999999999999999999999999999999998889999889998
Q ss_pred cCCCC-----CCCCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHH
Q psy11395 224 AGMLS-----RDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298 (831)
Q Consensus 224 ~g~ls-----~~g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~ 298 (831)
++.++ +++.|+|||.+++|+++|||++++||+++++|+++|++||++|.|++.++|+.+.....|+...+.++|+
T Consensus 217 ~~~ls~~~~~~~~~~rpfd~~r~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~ 296 (425)
T PRK06501 217 LSALSTQNDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIR 296 (425)
T ss_pred hhccccCCCCCCcccCCCCCCCCCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHH
Confidence 88887 4568999999999999999999999999999999999999999999999998876667788889999999
Q ss_pred HHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHH
Q psy11395 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 299 ~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~ 378 (831)
+||+++|++|+||+||++|||||+.+|.+|..+|.++|+.. ...++|+++|+++||+++|||++++++++
T Consensus 297 ~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~~~----------~~~~pv~s~k~~~Gh~~~AsG~~~~~~~~ 366 (425)
T PRK06501 297 AALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGER----------LASIPVSSNKSMIGHTLTAAGAVEAVFSL 366 (425)
T ss_pred HHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhccc----------CCCcEEECCCcccCCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999731 13589999999999999999999999999
Q ss_pred HHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 379 LCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 379 l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
++|++++|||++|+++|+|.++++- ++...+ ..+.+.+++|||||||+|+|+||++++
T Consensus 367 l~l~~~~ipp~~n~~~~~~~~~~~~----~~~~~~-------~~~~~~~l~ns~gfgG~n~~~vl~~~~ 424 (425)
T PRK06501 367 LTIQTGRLPPTINYDNPDPAIPLDV----VPNVAR-------DARVTAVLSNSFGFGGQNASLVLTAEP 424 (425)
T ss_pred HHHhcCcCCCcCCCCCCCCCCCccc----CCCccc-------CCCCCEEEEeCccCCCeeEEEEEecCC
Confidence 9999999999999999999988762 222222 235789999999999999999999875
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-61 Score=525.37 Aligned_cols=327 Identities=24% Similarity=0.319 Sum_probs=292.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHHHH
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRISYF 168 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris~~ 168 (831)
||+.+++.+.++++||+|||+. .+..++||++|++.+++..+.. ......++++.++..+.++++++|++.
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~---~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~ 77 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT---EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIK 77 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC---CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHH
Confidence 6788999999999999999986 4567899999998777543322 112235677888999999999999999
Q ss_pred cCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC------CCCCCccccCCCCc
Q psy11395 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDGICKTFDKNADG 242 (831)
Q Consensus 169 lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls------~~g~~~~Fd~~a~G 242 (831)
||++||+++|+++|+||+.||..|+++|++|+||++||||+|..++|..+..|..++.|+ +++.|||||++++|
T Consensus 78 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G 157 (342)
T PRK14691 78 HHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDG 157 (342)
T ss_pred hCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999888999998887 45789999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
+++|||++++||+++++|+++|++||++|+|++.++|+.+.....|++.++.++|++||+++||+|+||||||+|||||+
T Consensus 158 ~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~ 237 (342)
T PRK14691 158 FVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTP 237 (342)
T ss_pred ccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCc
Confidence 99999999999999999999999999999999999998776666788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC-C
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-L 401 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~-~ 401 (831)
.+|++|..||+++|+.. ..++|+|+|+++||+++|||++++++++++|++++|||++|+++|+|.++ +
T Consensus 238 ~~D~~E~~Ai~~~fg~~-----------~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ippt~n~~~~d~~~~~~ 306 (342)
T PRK14691 238 VGDLGEINAIKHLFGES-----------NALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGL 306 (342)
T ss_pred CCCHHHHHHHHHHhCCC-----------CCceEECCcccccCCcchhhHHHHHHHHHHHhCCccCCcCCCCCCCcccccc
Confidence 99999999999999741 35789999999999999999999999999999999999999999999873 3
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+ ++..+.++| +.+++++|||||||+|+|+||+++
T Consensus 307 ~----~v~~~~~~~-------~~~~al~nsfgfGG~n~~lvl~~~ 340 (342)
T PRK14691 307 N----IIAGNAQPH-------DMTYALSNGFGFAGVNASILLKRW 340 (342)
T ss_pred C----cccCCCccC-------CCCEEEEeCccCCCeeEEEEEeec
Confidence 2 233333332 468999999999999999999976
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=513.24 Aligned_cols=369 Identities=19% Similarity=0.238 Sum_probs=305.5
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChh-
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI- 90 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~- 90 (831)
.++|+|||||+++|.| .++++||++|.+|+++ ..++..+|.. .....+.+++ |+. + ++++
T Consensus 5 ~~rVvITGiG~vsp~G-~~~e~~w~aL~~G~sg-~~~~~~~~~~-------------~~~~~~~~~~-~~~--~-~~~~~ 65 (398)
T PRK06519 5 PNDVVITGIGLVSSLG-EGLDAHWNALSAGRPQ-PNVDTETFAP-------------YPVHPLPEID-WSQ--Q-IPKRG 65 (398)
T ss_pred CCCEEEEcceEECCCC-CCHHHHHHHHHcCCCC-CCCCcccccC-------------cCcccccccC-hhh--c-CCchh
Confidence 5689999999999999 8999999999999997 2222211110 0011112221 332 2 4555
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHH------------------hhhccCCCCccc
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLL------------------SDYIKIPVNAHH 152 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~------------------~~~~~~~~~~~~ 152 (831)
+.+.||+.+++.+.++.+||+|||++....+..++||++|++.+...... .......++++.
T Consensus 66 ~~r~~~r~~~~a~~Aa~~Al~dAGl~~~~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 145 (398)
T PRK06519 66 DQRQMETWQRLGTYAAGLALDDAGIKGNEELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTL 145 (398)
T ss_pred hhhccCHHHHHHHHHHHHHHHHcCCCCCCCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhh
Confidence 67899999999999999999999997655566799999999876543221 111122467788
Q ss_pred ccCcchhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCC
Q psy11395 153 CIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGI 232 (831)
Q Consensus 153 ~~g~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~ 232 (831)
++..+.|+++++|++.||++||+++|+++|+||+.||.+|+++|++|+||++||||+|..++|..+..|..++.++.. .
T Consensus 146 ~~~~~~n~~a~~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~~-~ 224 (398)
T PRK06519 146 FLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKG-G 224 (398)
T ss_pred hhhhhhhHHHHHHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCCC-C
Confidence 889999999999999999999999999999999999999999999999999999999998899888899999999864 5
Q ss_pred Ccc-ccC---CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy11395 233 CKT-FDK---NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDV 308 (831)
Q Consensus 233 ~~~-Fd~---~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~ 308 (831)
|+| ||. +++||++|||++++|||++++|+++|++|||+|+|++...++ .+..++.++|++||++||+ +
T Consensus 225 ~~p~~d~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~d~~~-------~~~~~~~~am~~AL~~Agl-~ 296 (398)
T PRK06519 225 WAPVWSRGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVESDRAR-------RAPGDLEASLERLLKPAGG-L 296 (398)
T ss_pred CCchhccCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEeecCCC-------CChHHHHHHHHHHHHHCCC-c
Confidence 666 666 699999999999999999999999999999999999653321 1345789999999999999 8
Q ss_pred CCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 309 RSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 309 ~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
+|||||++|||||+.+|..|..||+++|+ .+|+|+|+++||+++|||+++++.++++|++++|||
T Consensus 297 ~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~---------------~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~g~vpp 361 (398)
T PRK06519 297 AAPTAVISGATGAHPATAEEKAALEAALA---------------GPVRGIGTLFGHTMEAQFPLGLALAALSVSKGALFP 361 (398)
T ss_pred ccCCEEEeCCCCCCCccHHHHHHHHHHcC---------------CCccccchhhccchHHHHHHHHHHHHHHHhcCccCC
Confidence 99999999999999999999999999994 259999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++|+ +|+.+. +...+.++|++||++|.-...++|.
T Consensus 362 ~~n~---~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (398)
T PRK06519 362 PFDA---SGEKPM-------------------SGAAREAVVTTVGHWRGEGMALVEA 396 (398)
T ss_pred CCCC---CcccCc-------------------cccccEEEEEeeccCCcceeEEEEe
Confidence 9996 222111 2356889999999999888877764
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-58 Score=514.59 Aligned_cols=380 Identities=22% Similarity=0.296 Sum_probs=312.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCC-CceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGS-SVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
++|+|||+|+++|.| .+.++||++|++|+ ++|++++. |.. . ... +.|.+.+ ||. . .++.+.
T Consensus 2 ~~VvITG~G~vsp~G-~~~~~~~~~l~~G~~sgi~~~~~--~~~------~---~~~-~~g~~~~---~~~-~-~~~~~~ 63 (392)
T PRK09185 2 TPVYISAFGATSALG-RGLDAILAALRAGRASGMRPCDF--WLV------D---LPT-WVGEVVG---VEL-P-ALPAAL 63 (392)
T ss_pred CcEEEEeeEEECCCc-CCHHHHHHHHHcCCCCCeEeCcc--ccc------c---CCe-EEEEecC---ccc-c-cCCHHH
Confidence 479999999999999 89999999999999 99998863 210 0 011 1122333 553 2 267777
Q ss_pred hccCCHHHHHHHHHHHH---HHHHcCCCCCCCCCCcceeEEeccccchHHHHhhh------ccCCCCcccccCcchhHHH
Q psy11395 92 AESMDPQQRILLELSWK---TIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDY------IKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~---ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~a 162 (831)
.+.|++..++...++.+ |++|++ .+.+..++||++|++.+........+ .......+.++....++++
T Consensus 64 ~~~~~~~~~~~~~a~~~~~~a~~~~~---~~~~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 140 (392)
T PRK09185 64 AAFDCRNNRLALLALQQIEPAVEAAI---ARYGADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSLA 140 (392)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhc---ccCCCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhhhcccHHH
Confidence 88899988888777666 555554 34456789999999876543322111 1111234445667788999
Q ss_pred HHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 163 NRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 163 ~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
++|++.||++||+++++++|+|++.||++|+++|++|+||++||||++. ..+..+..|..++.++. +.|+|||.+++|
T Consensus 141 ~~ia~~lgl~Gp~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~~-~~~~Pfd~~~~G 218 (392)
T PRK09185 141 DFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLSP-QPCRPFSANRDG 218 (392)
T ss_pred HHHHHHhCCCCCcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccCC-CccCCCcCCCCc
Confidence 9999999999999999999999999999999999999999999999997 45566677888888875 689999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
+++|||++++||+++ ++.+ ++|.|++.++|+.+.....|+..++.++|++||++||++|+|||||++|||||+
T Consensus 219 ~~~gEGaa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~ 291 (392)
T PRK09185 219 INIGEAAAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATP 291 (392)
T ss_pred cceeceEEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEeCCCCCc
Confidence 999999999999987 2333 579999999999876667788889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCC
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLD 402 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~ 402 (831)
.+|.+|..+|.++|+. .++|+|+|+++||+++|||++++++++++|+++++||++|+++++|.++++
T Consensus 292 ~~D~~E~~al~~~f~~-------------~~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 358 (392)
T PRK09185 292 LNDAMESRAVAAVFGD-------------GVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPL 358 (392)
T ss_pred CCCHHHHHHHHHHhCC-------------CCceeCCCcccccChhhcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Confidence 9999999999999973 356999999999999999999999999999999999999999999998764
Q ss_pred CCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 403 ~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+++.+..+| .+|++++|||||||+|+|+||++.
T Consensus 359 ----~~~~~~~~~-------~~~~~l~~s~gfgG~n~~lvl~~~ 391 (392)
T PRK09185 359 ----YLVENAQAL-------AIRYVLSNSFAFGGNNCSLIFGRA 391 (392)
T ss_pred ----ccCCCCccC-------CCCEEEEeCccCCceeEEEEEEeC
Confidence 344444433 478999999999999999999864
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=366.45 Aligned_cols=321 Identities=26% Similarity=0.378 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh-hccCCCCcccccCcchhHHHHHHHHHcCCCCCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD-YIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~ 176 (831)
+++|+++++++||++||+++........+||+|++.+.+...... .......++.+.+...+.++++|+..+|++||++
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~ 90 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAY 90 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCCCCcc
Confidence 788999999999999999966656667799999987766422111 1112456677778888999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
+|+++|+|++.||++|+++|++|++|.+||+|+|....+.........+.+.+++.|+||+...+|+++|||++++||++
T Consensus 91 ~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaaA~vL~~ 170 (332)
T cd00825 91 DVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEE 170 (332)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEEEEEECc
Confidence 99999999999999999999999999999999999877766656666677788899999999999999999999999999
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHh
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f 336 (831)
.+.|+++|.+++++|.|++..+++.......+....+.++++++|+++|++++||||++.|++|++..|.+|.+++...+
T Consensus 171 ~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~ 250 (332)
T cd00825 171 LEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250 (332)
T ss_pred HHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999877666678888999999999999999999999999999999999999999988777
Q ss_pred hhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCc
Q psy11395 337 HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416 (831)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~ 416 (831)
+. .++++.+.|.++||+.+|+|++.+++++++++++.+||++|+.++++... .+..+..
T Consensus 251 ~~------------~~~~~~~~~~~~G~~~aas~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~~~~~--- 309 (332)
T cd00825 251 GD------------KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAGL------NIVTETT--- 309 (332)
T ss_pred CC------------CCceeECCCcccccchhHhHHHHHHHHHHHHhcCccCCCCCCCCCCcccC------cccCCCC---
Confidence 43 24678999999999999999999999999999999999999999988221 2333322
Q ss_pred cccccccccEEEEcccCCCCceeEEEE
Q psy11395 417 KPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 417 ~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
....+++++++||+||+|+|+||
T Consensus 310 ----~~~~~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 310 ----PRELRTALLNGFGLGGTNATLVL 332 (332)
T ss_pred ----CCCCCEEEEeeecCCCeeEEEeC
Confidence 12468999999999999999986
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=355.51 Aligned_cols=245 Identities=37% Similarity=0.573 Sum_probs=198.8
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccc---cCCCCcccccccCcccCCCCCCCCCh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKN---KHKGINFGAFLKDIECFDAPFFKISP 89 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~---~~~~~~~~~~l~~~~~FD~~~f~i~~ 89 (831)
++||||||||++|+| .+.++||++|.+|++++.++|. ||.....++... ......++++++ ...||+.+|++++
T Consensus 2 ~~V~ItG~g~~~p~g-~~~~~~w~~L~~g~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (254)
T PF00109_consen 2 RRVVITGMGCVTPGG-DGLEEFWEALLSGRSGIRPIPE-RWDPSDYYDPPSRVAGEIDDKKGGFID-DFDFDAYFFGIPP 78 (254)
T ss_dssp S-EEEEEEEEEBTTB-SSHHHHHHHHHTT---EEESCS-SSCHTTSTTSSCSEEECBSSSEESSST-TTCGGGTSTCHHH
T ss_pred CEEEEEEEEEECcCC-CCHHHHHhhhccCceeeeeecc-ccccccccccCCcccccccccccceee-ecccccccccccc
Confidence 579999999999998 8899999999999999999999 887655532111 122235678888 8889999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc-ceeEEeccccchHHHHhh--hc--cCCCCcccccCcchhHHHHH
Q psy11395 90 IEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSN-TGVFIGASGSDYTRLLSD--YI--KIPVNAHHCIGNSMAVLANR 164 (831)
Q Consensus 90 ~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~-~gV~~G~~~~~~~~~~~~--~~--~~~~~~~~~~g~~~~~~a~r 164 (831)
++++.|||++++++.++++||+|||+++..+++.+ +|||+|++.+++..+... .. .....++.....+.+.++++
T Consensus 79 ~~~~~~~~~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ 158 (254)
T PF00109_consen 79 REARRMDRQSRLALAAAREALEDAGLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGR 158 (254)
T ss_dssp HHHHTS-HHHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHH
T ss_pred hhhhhhhhhhhHHHHHhhhhcccccccccccccccceeeccccccccccccccccccccccccccccccCcccccccccc
Confidence 99999999999999999999999999988777765 999999999876432221 11 11233322223488999999
Q ss_pred HHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcce
Q psy11395 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYV 244 (831)
Q Consensus 165 is~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v 244 (831)
||+.||++||+++|+++|+||+.||+.|+++|++|+||+|||||+|..++|..+..|..+++++.++.|+|||.+++|++
T Consensus 159 ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v 238 (254)
T PF00109_consen 159 IAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFV 238 (254)
T ss_dssp HHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-
T ss_pred hhhhcCCCCccccccccccccccccchhccccccccccccccccccccccccccccccccccccccccccccCCCCCCEE
Confidence 99999999999999999999999999999999999999999999998899999999999999998889999999999999
Q ss_pred ecCceEEEEecchhhh
Q psy11395 245 RGEGAVMLMLKPLSVA 260 (831)
Q Consensus 245 ~gEGaaavvL~~~~~A 260 (831)
+|||+|+|||+++++|
T Consensus 239 ~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 239 LGEGAGALVLERLEHA 254 (254)
T ss_dssp BB-EEEEEEEEEHHHH
T ss_pred EECceEEEEEEEhhhC
Confidence 9999999999999886
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=337.56 Aligned_cols=338 Identities=15% Similarity=0.119 Sum_probs=257.6
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
|.++|+|+|+|+++|.| .+.++.|..|+.|.+.....+ |. +... ...+. +. .++-++
T Consensus 1 ~~~~v~I~~~g~vs~lG-~~~~~~~aa~ragi~~~~~~~---~~-----~~~~-~~~i~-~~------------~~~~~~ 57 (348)
T PRK06147 1 MMRALAIVGSGMVTAVG-LDAPSSCAAIRARLDNFQETR---FI-----DPPG-GEWLI-GA------------PVPLPP 57 (348)
T ss_pred CCCceEEEecceeecCc-CCHHHHHHHHHcccccccccc---cc-----cCCC-CCceE-ee------------cCcCCc
Confidence 45679999999999999 899999999998876553221 10 0000 00000 00 011111
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHc
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAG-YDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFY 169 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG-~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~l 169 (831)
......+..+|+..++.+||++++ +++. +++++++.+..+- ... +......+++.++..+
T Consensus 58 ~~~~~~r~~~La~~Al~~aL~~a~~~~~~-----~i~lil~~~~~~~----------~~~----~~~~~~~~~~~~~~~l 118 (348)
T PRK06147 58 PWRGPERLAEMAAPAIAEALEGLPALDAS-----EAPLLLCVAEEER----------PGR----PPDLEERLLRELEARL 118 (348)
T ss_pred ccCchHHHHHHHHHHHHHHHHhccccccc-----CCcEEEEeCchhc----------CCC----CcchHHHHHHHHHHHh
Confidence 112234678899999999999998 4443 4567877643210 000 0011223466778888
Q ss_pred CC--CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecC
Q psy11395 170 NF--TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247 (831)
Q Consensus 170 gl--~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gE 247 (831)
|+ +||+++|.++|+|++.||..|+++|++|+||.+||||+|.++.+..+..|...+.+..+ .+++|+++||
T Consensus 119 G~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~~-------~~~~G~v~GE 191 (348)
T PRK06147 119 GLRLEPGSAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTS-------QNSNGFIPGE 191 (348)
T ss_pred CCCCCCCcccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCCC-------CCCCceeeec
Confidence 87 57899999999999999999999999999999999999998887777777766555431 3689999999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCC-CCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCH
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTA-PNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~-p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~ 326 (831)
|++++||+++++|+++|++||+ .|++.+.++.+..... +++.++.++|++||+++|++++|||||++|+|||+.+|.
T Consensus 192 GA~a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~ 269 (348)
T PRK06147 192 AAAAVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYRFK 269 (348)
T ss_pred eEEEEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccchH
Confidence 9999999999999999999999 6777776664332222 368999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCc
Q psy11395 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406 (831)
Q Consensus 327 ~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~ 406 (831)
.|..++.++|+... ...++.+.|+++||+.+|+|+++++.++++|+++++|+.
T Consensus 270 ~e~~A~~~~f~~~~----------~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~----------------- 322 (348)
T PRK06147 270 EAALAEMRLFRVRK----------EFFDLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGP----------------- 322 (348)
T ss_pred HHHHHHHHHhhhcc----------CCCceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCC-----------------
Confidence 99999999997521 345789999999999999999999999999999988733
Q ss_pred eeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 407 ~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+++|.|-.-.|.-+.+||+.
T Consensus 323 -------------------~~L~~s~~d~g~r~a~~l~~ 342 (348)
T PRK06147 323 -------------------NVLCHLSDDDGARAALVLEY 342 (348)
T ss_pred -------------------cEEEEecCCCCceEEEEEec
Confidence 25666667778888888874
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=267.15 Aligned_cols=247 Identities=27% Similarity=0.415 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC-CCCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-TGPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl-~Gps~ 176 (831)
++.|+.+++.+||+++|+++++++ +|++|+...++. .+..+.+|+..+|+ ++|++
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~----~li~~~~~~~~~--------------------~~~~a~~i~~~lg~~~~~~~ 62 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIV----GVIVGTTGGSGE--------------------FSGAAGQLAYHLGISGGPAY 62 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCce----EEEEEECCCCcc--------------------ccHHHHHHHHHhCCCCCCcc
Confidence 678999999999999999987766 799998765541 34578899999999 89999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
+|+++|+|++.||+.|+++|++|++|.+||+|+|. +++|||++++||++
T Consensus 63 ~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~-------------------------------~~~gdGAaa~vL~~ 111 (254)
T cd00327 63 SVNQACATGLTALALAVQQVQNGKADIVLAGGSEE-------------------------------FVFGDGAAAAVVES 111 (254)
T ss_pred eeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce-------------------------------eeecceEEEEEECc
Confidence 99999999999999999999999999999999997 67899999999999
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHh
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f 336 (831)
.+.+.++++++++.|.++....++.... ..+......++++++|+++|++++|||++++|++++...|.+|.......+
T Consensus 112 ~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~~~~~~~~~~~~ 190 (254)
T cd00327 112 EEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPD 190 (254)
T ss_pred HHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCccccHHHHHHHHHHh
Confidence 9999999999999999998887765432 456788899999999999999999999999999999999999887665444
Q ss_pred hhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCc
Q psy11395 337 HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416 (831)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~ 416 (831)
.. ..+++.+.|..+||+.+|+|+..+.+++.+++++.+||.
T Consensus 191 ~~------------~~~~~~~~~~~~G~~~~as~~~~l~~~~~~~~~~~~~~~--------------------------- 231 (254)
T cd00327 191 GV------------RSPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT--------------------------- 231 (254)
T ss_pred CC------------CCCceeccccccccchHHHHHHHHHHHHHHHhCCCcCCC---------------------------
Confidence 31 236789999999999999999999999999999999981
Q ss_pred cccccccccEEEEcccCCCCceeEEEE
Q psy11395 417 KPKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 417 ~~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
....+++++++||+||+++++||
T Consensus 232 ----~~~~~~~l~~~~g~Gg~~~~~~l 254 (254)
T cd00327 232 ----PREPRTVLLLGFGLGGTNAAVVL 254 (254)
T ss_pred ----CCCcCEEEEeeEcCCCcceEEEC
Confidence 01346799999999999999986
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-25 Score=210.15 Aligned_cols=118 Identities=37% Similarity=0.662 Sum_probs=99.4
Q ss_pred EEEEeeeeeccCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccc
Q psy11395 268 YAIIKGSAITHNG-QSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNI 346 (831)
Q Consensus 268 ~a~I~g~~~~~dg-~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~ 346 (831)
||+|+|+++++|| .+..++.|++.++.++|++||+++|++|+||||||+||+||+.+|.+|+++|.++|+....
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~----- 75 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSAR----- 75 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGG-----
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccccc-----
Confidence 7999999999999 7778999999999999999999999999999999999999999999999999999986432
Q ss_pred ccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCC
Q psy11395 347 KNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFY 393 (831)
Q Consensus 347 ~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~ 393 (831)
..+++|+++|+++||+++|||++++++++++|++++|||++||+
T Consensus 76 ---~~~~~v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~n~~ 119 (119)
T PF02801_consen 76 ---QQPVPVGSVKSNIGHTEAASGLLSLAKALLALEHGTIPPTINFE 119 (119)
T ss_dssp ---TSTSEEE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT-S
T ss_pred ---ccccceeccccccccccccchHHHHHHHHHHHhcCCCCCCcCCC
Confidence 15699999999999999999999999999999999999999985
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=234.63 Aligned_cols=265 Identities=17% Similarity=0.182 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|+....+. .. .++..++..+|+. .|++
T Consensus 27 ~~La~~A~~~AL~~agl~~~dID----~vi~g~~~~~~~-------------------~~-~~a~~va~~lGl~~~~p~~ 82 (393)
T PRK05656 27 VELGAAVIRRLLEQTGLDPAQVD----EVILGQVLTAGA-------------------GQ-NPARQAAIKAGLPHSVPAM 82 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEEecCCCC-------------------CC-cHHHHHHHHcCCCCCcceE
Confidence 46889999999999999999998 688887542210 01 1456788999996 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch----------------hHHH------H------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN----------------TIAY------Y------------ 222 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~----------------~~~~------~------------ 222 (831)
+|+++|+|++.|++.|+++|++|.+|++||+|+|.+..... ...+ .
T Consensus 83 ~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 162 (393)
T PRK05656 83 TLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFNDYHMGITAE 162 (393)
T ss_pred EecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccCCCHHHHHH
Confidence 99999999999999999999999999999999997653110 0000 0
Q ss_pred ----HcCCCC------------------CCCCCc----cccC--------------------------------CCCcce
Q psy11395 223 ----KAGMLS------------------RDGICK----TFDK--------------------------------NADGYV 244 (831)
Q Consensus 223 ----~~g~ls------------------~~g~~~----~Fd~--------------------------------~a~G~v 244 (831)
+.|+.. +.+..+ |+.. ..+|.+
T Consensus 163 ~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p~~~~~g~l 242 (393)
T PRK05656 163 NLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKPAFKKDGSV 242 (393)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCCCcCCCCCE
Confidence 000000 001100 1100 023445
Q ss_pred -------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 245 -------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 245 -------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
++||++++||++++.|++.|.+++++|+|++.... ...+...+...+++++|+++||+|+||||+|+|
T Consensus 243 t~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~dId~~e~~ 317 (393)
T PRK05656 243 TAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGV-----DPAIMGIGPVSATRRCLDKAGWSLAELDLIEAN 317 (393)
T ss_pred EccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CCcccchhHHHHHHHHHHHcCCCHHHCCEEEec
Confidence 89999999999999999999999999999987642 122334567789999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
++ +.+|..++.+.|+-. ..++++.+.|..+||+.||+|+..++.++++|+..
T Consensus 318 d~-----f~~~~~~~~e~lg~~----------~~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~~------------- 369 (393)
T PRK05656 318 EA-----FAAQSLAVGKELGWD----------AAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIRR------------- 369 (393)
T ss_pred Cc-----cHHHHHHHHHHhCCC----------CccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHHc-------------
Confidence 75 557777888888631 14578999999999999999999999999988641
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.|+++++...-||....+|||.
T Consensus 370 -------------------------~~~~gl~~~c~~gG~g~a~~~e~ 392 (393)
T PRK05656 370 -------------------------DAKKGLATLCIGGGQGVALAIER 392 (393)
T ss_pred -------------------------CCCEEEEEEcccCcceEEEEEec
Confidence 34679999999999999999985
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=232.98 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|+.+++.+||+|||+++++++ +|++|+...++... ....+..++..+|++ +|.+
T Consensus 22 ~~eLa~~a~~~Al~dagl~~~~Id----~vi~g~~~~~~~~~------------------~~~~a~~va~~lGl~~~~~~ 79 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDGKDID----AMYVGNMSAGLFVS------------------QEHIAALIADYAGLAPIPAT 79 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccccccc------------------cccHHHHHHHHcCCCCCCee
Confidence 467899999999999999998888 68888754333100 012567789999998 6999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch--h-----------------------HHH------HHcC
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN--T-----------------------IAY------YKAG 225 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~--~-----------------------~~~------~~~g 225 (831)
+|+++|+|++.||..|+++|++|++|++||+|++.+..... . +.+ .+.|
T Consensus 80 ~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~~~~~yG 159 (389)
T PRK06064 80 RVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIARRYMHKYG 159 (389)
T ss_pred EEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999986432100 0 000 0001
Q ss_pred CC-----------------CCCC----------------CCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEe
Q psy11395 226 ML-----------------SRDG----------------ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272 (831)
Q Consensus 226 ~l-----------------s~~g----------------~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~ 272 (831)
.- .+.. .+.|+. ..|...++||++++||++.+.|++.++++ +.|+
T Consensus 160 ~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~~~~-v~I~ 237 (389)
T PRK06064 160 TTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYTDTP-VWIK 237 (389)
T ss_pred CCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhcCCC-eEEE
Confidence 00 0000 000111 22444689999999999999999988665 5899
Q ss_pred eeeeccCCCCCCCC--CCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccc----
Q psy11395 273 GSAITHNGQSNGLT--APNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNI---- 346 (831)
Q Consensus 273 g~~~~~dg~~~~~~--~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~---- 346 (831)
|++..+++.+.... .+...+...+++++|+++||+++|||++|+|+++|.. +.++++++. |+..+......
T Consensus 238 g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~~-~~~~~e~lg--l~~~G~~~~~~~~g~ 314 (389)
T PRK06064 238 ASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIA-EILAYEDLG--FAKKGEGGKLAREGQ 314 (389)
T ss_pred EEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcHH-HHHHHHHcC--CCCCCchHHHHHCCC
Confidence 99988776542211 1234567789999999999999999999999999963 555655554 22110000000
Q ss_pred ccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcCc--cCCCCCCCCCCCCCCCCCCCceeecccccCccccccc
Q psy11395 347 KNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNKK--LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN 422 (831)
Q Consensus 347 ~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~~--ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~ 422 (831)
......++|+..++. .||+.+|+|+..++.++++|+.+. -..+ ..
T Consensus 315 ~~~~g~~pvN~~GG~l~~Ghp~~a~G~~~~~e~~~qL~g~a~~g~rq-------------------------------v~ 363 (389)
T PRK06064 315 TYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAEKGRQQ-------------------------------VI 363 (389)
T ss_pred ccCCCCeeecCCCCcccCCCCcchhHHHHHHHHHHHHhCCCCCCCcc-------------------------------CC
Confidence 000123456555554 599999999999999999999852 1111 12
Q ss_pred cccEEEEcccCC-CCceeEEEEcc
Q psy11395 423 KLRIAGVSSFGS-GGTNAHVVLSE 445 (831)
Q Consensus 423 ~~r~a~v~sfG~-gG~nahvil~~ 445 (831)
+.++++++++|. +++++.+||+.
T Consensus 364 ~a~~~l~~~~g~~~~~~~~~vl~~ 387 (389)
T PRK06064 364 GAGYGLTHNVGGTGHTAVVHILSR 387 (389)
T ss_pred CccEEEEecCCCccceEEEEEEEe
Confidence 457899999884 34566666653
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=230.90 Aligned_cols=266 Identities=20% Similarity=0.215 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
...|+.+++++||+|||+++++++ +|++|+...++. ....+..+...+|++. |+
T Consensus 22 ~~~La~~A~~~AL~dAgl~~~dID----~vi~~~~~~~~~--------------------~~~~a~~v~~~lGl~~~~~~ 77 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDPEEVD----DVIMGNVLQAGE--------------------GQNPARQAALLAGLPESVPA 77 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC----EEEEEeccCCCC--------------------CChHHHHHHHHcCCCCCCch
Confidence 367899999999999999999998 688886544331 0124567889999974 99
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH------HH---------HHcCCCC------------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI------AY---------YKAGMLS------------ 228 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~------~~---------~~~g~ls------------ 228 (831)
+.|+++|+|++.||..|+++|++|.+|.+||+|+|.+....... .+ ...+...
T Consensus 78 ~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 157 (386)
T cd00751 78 TTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFTGLSMGITAE 157 (386)
T ss_pred hhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999998753211000 00 0001000
Q ss_pred ----------------------------------------------------CCCCCcc-------------cc-----C
Q psy11395 229 ----------------------------------------------------RDGICKT-------------FD-----K 238 (831)
Q Consensus 229 ----------------------------------------------------~~g~~~~-------------Fd-----~ 238 (831)
++...++ |+ .
T Consensus 158 ~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~i~~p~g~l~ 237 (386)
T cd00751 158 NVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKPAFKKDGTVT 237 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCCcCCCCcEe
Confidence 0000000 11 0
Q ss_pred CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 239 ~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
..|-..++||++++||++++.|++.+++++++|+|++.++++.. +...+...+++++|++|||+|+|||++|+|.
T Consensus 238 ~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~~~-----~~~~~~~~a~~~a~~~Agi~~~did~~e~~d 312 (386)
T cd00751 238 AGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPA-----IMGIGPVPAIPKALKRAGLTLDDIDLIEINE 312 (386)
T ss_pred CCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCCc-----ccchhHHHHHHHHHHHcCCCHHHcCEEEeec
Confidence 12223469999999999999999999999999999999876543 2334567899999999999999999999997
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~ 398 (831)
++|. .|... .+.|+-.. .++++.+.+..+||+.+|+|+.++++++++|+.+
T Consensus 313 ~f~~----~~~~~-~e~lg~~~----------~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g~-------------- 363 (386)
T cd00751 313 AFAA----QALAC-LKELGLDP----------EKVNVNGGAIALGHPLGASGARIVVTLLHELKRR-------------- 363 (386)
T ss_pred hhHH----HHHHH-HHHhCCCh----------hhcCCCcchHhhCccHHHHHHHHHHHHHHHHHhc--------------
Confidence 7762 23322 23343110 2455666667889999999999999999999873
Q ss_pred CCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 399 i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..|+++++..+.||..+.+|||.
T Consensus 364 ------------------------~~~~gl~~~~~~gg~g~~~~ie~ 386 (386)
T cd00751 364 ------------------------GGRYGLATMCIGGGQGAAMVIER 386 (386)
T ss_pred ------------------------CCCEEEEEEcccccceEEEEEEC
Confidence 23679999999999999999984
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=222.51 Aligned_cols=265 Identities=20% Similarity=0.175 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.++.+++|+|+|+++++++ .||+|...... . ...++..++...|+. -|++
T Consensus 28 ~~L~~~a~~~al~~agi~~~~Id----~vv~G~~~~~~-----------------~---g~~~~r~~~~~~Gl~~~~p~~ 83 (392)
T PRK06633 28 PMLAAHLIKDILQNSKIDPALVN----EVILGQVITGG-----------------S---GQNPARQTLIHAGIPKEVPGY 83 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEEecCccc-----------------c---ccHHHHHHHHHCCCCCCccch
Confidence 45789999999999999999998 58888653221 0 113456677889996 3999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cchhH-----------H-----HHHc-CCCCC-C-------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSNTI-----------A-----YYKA-GMLSR-D------- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~~~-----------~-----~~~~-g~ls~-~------- 230 (831)
+|+++|+||+.|++.|++.|++|++|++||||+|.+.. |.... . +... +.+.. .
T Consensus 84 ~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~ 163 (392)
T PRK06633 84 TINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGVFMGITAEN 163 (392)
T ss_pred hhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCCCCcchhcccccccCcchhhhhhcccccccccCcchHHHHHHH
Confidence 99999999999999999999999999999999998763 31000 0 0000 00000 0
Q ss_pred -----------------------------CCCc----ccc-----------------------C--------CCCc----
Q psy11395 231 -----------------------------GICK----TFD-----------------------K--------NADG---- 242 (831)
Q Consensus 231 -----------------------------g~~~----~Fd-----------------------~--------~a~G---- 242 (831)
+..+ |.+ . +.+|
T Consensus 164 ~~~~~gitre~~d~~Avksh~~a~~np~A~~~~~ei~p~~v~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~~~~~g~lt~ 243 (392)
T PRK06633 164 ISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEVTIKKTTSLFDHDETVRPDTSLEILSKLRPAFDKNGVVTA 243 (392)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCcCceeeEEeccCCCceeeccCCCCCCCCCHHHHccCCCccCCCCCEec
Confidence 1000 110 0 0123
Q ss_pred ---ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 243 ---YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 243 ---~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
..++||++++||++++.|++.|.+++++|+|++...+... ....+...++++||+++||+|+||||+|.|
T Consensus 244 ~n~s~~sDGAaalvl~see~A~~~g~~p~a~I~g~~~~~~~~~-----~~~~~~~~a~~~Al~~AGl~p~DID~~ei~-- 316 (392)
T PRK06633 244 GNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVDPS-----IMGTAPVPASQKALSKAGWSVNDLEVIEVN-- 316 (392)
T ss_pred hhcCCccCceEEEEEecHHHHHHCCCCeeEEEEEEEEecCCcc-----hhchHHHHHHHHHHHHcCCCHHHcCeeehh--
Confidence 3479999999999999999999999999999988754221 112456789999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
|..++..++....... ...++++.+.|..+||+.||+|+.+++.++++|+++
T Consensus 317 --------dafa~~~l~~~~~l~~-----~~~~vN~sGg~~a~GHplgAtG~~~~~~~~~qL~~~--------------- 368 (392)
T PRK06633 317 --------EAFAAQSIYVNREMKW-----DMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRRA--------------- 368 (392)
T ss_pred --------hHHHHHHHHHHhhhCC-----CccccCCCCchHhhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 4444444443211100 013577889999999999999999999999999762
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++..+-||.-..+|||.
T Consensus 369 -----------------------~~~~g~~~~c~~gG~g~a~~~e~ 391 (392)
T PRK06633 369 -----------------------KAKKGLVTLCIGGGMGMAMCVEA 391 (392)
T ss_pred -----------------------CCCeEEEEEecccChhheEEEEe
Confidence 23568888888899999999985
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=221.06 Aligned_cols=267 Identities=17% Similarity=0.185 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
...|+.+++++||+|+|+++++++ .|++|+...++. . ...++..++..+|+. .|+
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~~ID----~vi~G~~~~~~~----------------~---~~~~a~~i~~~lGl~~~~p~ 83 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPAEVE----DVIMGCANPEGA----------------T---GANIARQIALRAGLPVTVPG 83 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----cEEEEEeecccc----------------c---ccHHHHHHHHHcCCCCCCce
Confidence 467899999999999999999998 588887654431 0 123788899999985 699
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------------------h--HHH-----HHcCCCC-
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------------------T--IAY-----YKAGMLS- 228 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------------------~--~~~-----~~~g~ls- 228 (831)
++|+++|+||+.||+.|+++|++|++|++||||+|.+..... + +.. ...-.++
T Consensus 84 ~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~a~~~~i~r 163 (392)
T PRK07108 84 MTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAENVAKRYGISK 163 (392)
T ss_pred eeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999998753210 0 000 0000000
Q ss_pred ------------------CCCC--------------Ccc-----------ccCC-------------------CCcc---
Q psy11395 229 ------------------RDGI--------------CKT-----------FDKN-------------------ADGY--- 243 (831)
Q Consensus 229 ------------------~~g~--------------~~~-----------Fd~~-------------------a~G~--- 243 (831)
..+. -.| ++.+ -.|.
T Consensus 164 ~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~~~~~g~lt~ 243 (392)
T PRK07108 164 ERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSALPGGVITA 243 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCCCCCCCCCcC
Confidence 0010 001 1111 0232
Q ss_pred ----eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 244 ----VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 244 ----v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
.++||++++||++++.|++.|.+++++|+|++...+. ..+...+...+++++|+++||+|+|||++|.|
T Consensus 244 ~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~Did~~ei~-- 316 (392)
T PRK07108 244 GNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCE-----PDEMGIGPVFAVPKLLKQAGLKVDDIDLWELN-- 316 (392)
T ss_pred CcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEeccC-----CcccchhHHHHHHHHHHHcCCCHHHcCchHhh--
Confidence 3799999999999999999999999999999887532 12233456789999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
|..++..++......- ...++.+.+.+..+||+.||+|+..++.++..|+++
T Consensus 317 --------eafa~~~l~~~e~lg~-----~~~~vN~~GG~~a~GHp~gatG~r~~~~l~~~l~~~--------------- 368 (392)
T PRK07108 317 --------EAFAVQVLYCRDTLGI-----PMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKRR--------------- 368 (392)
T ss_pred --------hHHHHHHHHHHHhcCC-----CccccCCCCChHHhCcchhhhHHHHHHHHHHHHHhh---------------
Confidence 5555555543211100 013567788888899999999999999999999762
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++.+++..+-||.-..+|||.
T Consensus 369 -----------------------~~~~g~~~~c~~gg~g~a~~ie~ 391 (392)
T PRK07108 369 -----------------------GAKYVVVTMCIGGGQGAAGLFEV 391 (392)
T ss_pred -----------------------CCCEEEEEEccccChhhEEEEEe
Confidence 23578888899999999999985
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=218.55 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+|||+++++++ +|++|+...+.. ....+..++..+|+++ |.+
T Consensus 21 ~~eLa~~A~~~AL~dAgi~~~dID----~vi~g~~~~~~~--------------------~~~~a~~v~~~lGl~~~~~~ 76 (385)
T PRK12578 21 VQELAWESIKEALNDAGVSQTDIE----LVVVGSTAYRGI--------------------ELYPAPIVAEYSGLTGKVPL 76 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccccc--------------------cCChHHHHHHHhCCCCCCee
Confidence 367999999999999999999988 688886532110 0113567899999976 779
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh---H--------HHH--HcCCC----------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT---I--------AYY--KAGML---------------- 227 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~---~--------~~~--~~g~l---------------- 227 (831)
+|+++|+|++.||+.|++.|++|++|++||+|+|.+...... . .+. ..|..
T Consensus 77 ~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a~~~m~~~ 156 (385)
T PRK12578 77 RVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYATRHMAVY 156 (385)
T ss_pred EEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975432100 0 000 00100
Q ss_pred --------------------CCCCC----------------CccccCCCCcceecCceEEEEecchhhhhhCCCceEEEE
Q psy11395 228 --------------------SRDGI----------------CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAII 271 (831)
Q Consensus 228 --------------------s~~g~----------------~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I 271 (831)
.+.+. +.|+ ...|-..++||++++||.+.+.|++.+.++++.|
T Consensus 157 g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~l~~~~~~~I 235 (385)
T PRK12578 157 GTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKELKIDSPVWI 235 (385)
T ss_pred CcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHhcCCCCCeEE
Confidence 00000 0111 1123344799999999999999998886777899
Q ss_pred eeeeeccCCCCCCCCCCC---HHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc---
Q psy11395 272 KGSAITHNGQSNGLTAPN---PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK--- 344 (831)
Q Consensus 272 ~g~~~~~dg~~~~~~~p~---~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~--- 344 (831)
+|++..++..... ..|+ ..+...++++||++|||+++|||++|.|.++| ..|+.++... |........
T Consensus 236 ~g~g~~~~~~~~~-~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft----~~~l~~le~lGl~~~G~~~~~~~ 310 (385)
T PRK12578 236 TGIGYANDYAYVA-RRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFT----IAEIMGYEDLGFTEKGKGGKFIE 310 (385)
T ss_pred EEEEEecCccccc-ccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcCh----HHHHHHHHHcCCCCCCchHHHHH
Confidence 9999877654321 1121 23566899999999999999999999999999 5576666544 222110000
Q ss_pred -ccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 345 -NIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 345 -~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
.......+++|+..-+. .||+.||+|+..++.++.+|+.+
T Consensus 311 ~G~~~~~G~~pvN~~GG~la~GhP~gatG~~~v~e~~~qLrg~ 353 (385)
T PRK12578 311 EGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDE 353 (385)
T ss_pred CCCccCCCCeeeCCCCCcccCCCCccHHHHHHHHHHHHHHhCC
Confidence 00001122344333333 39999999999999999999875
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=218.43 Aligned_cols=266 Identities=20% Similarity=0.174 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|+...++. ....++..++...|+. .|++
T Consensus 28 ~eL~~~A~~~AL~~agi~~~dID----~vi~g~~~~~~~-------------------~~~~~a~~~~~~~Gl~~~~p~~ 84 (394)
T PRK09051 28 TDLGATVVREALARAGVDPDQVG----HVVFGHVIPTEP-------------------RDMYLSRVAAINAGVPQETPAF 84 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEeeeccccC-------------------CCccHHHHHHHHcCCCCCCceE
Confidence 56889999999999999999988 588887643221 0012344456777884 5999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-------------HHHHH------c-------C-----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-------------IAYYK------A-------G----- 225 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-------------~~~~~------~-------g----- 225 (831)
+|+++|+|++.|++.|+++|++|.+|++||+|+|.+...... ..+.. . +
T Consensus 85 ~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 164 (394)
T PRK09051 85 NVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTIHMGVTAEN 164 (394)
T ss_pred EecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCCCHHHHHHH
Confidence 999999999999999999999999999999999976532100 00000 0 0
Q ss_pred ------------------------------CC------------------CCCCCC------------ccccCCCCcce-
Q psy11395 226 ------------------------------ML------------------SRDGIC------------KTFDKNADGYV- 244 (831)
Q Consensus 226 ------------------------------~l------------------s~~g~~------------~~Fd~~a~G~v- 244 (831)
.+ .++... +|+....+|.+
T Consensus 165 ~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~~~~~g~lt 244 (394)
T PRK09051 165 VAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVFKKENGTVT 244 (394)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcccCCCccEe
Confidence 00 111111 11111111333
Q ss_pred ------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 245 ------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 245 ------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
++||++++||++++.|++.|++++++|+|++...... .+...+...+++++|++|||+++|||+||+|.
T Consensus 245 ~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~agi~~~did~~ei~d 319 (394)
T PRK09051 245 AGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDP-----EYMGIGPVPATQKALERAGLTVADLDVIEANE 319 (394)
T ss_pred CCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEeccCC-----CcccccHHHHHHHHHHHcCCCHHHcCEEEecC
Confidence 5899999999999999999999999999998875322 12234567899999999999999999999996
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~ 398 (831)
. +.++..+..+.|+-.. .++.+.+.+..+||+.||+|+..++.++.+|+.+
T Consensus 320 ~-----f~~~~~~~~e~lg~~~----------~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~~-------------- 370 (394)
T PRK09051 320 A-----FAAQACAVTRELGLDP----------AKVNPNGSGISLGHPVGATGAIITVKALYELQRI-------------- 370 (394)
T ss_pred c-----cHHHHHHHHHHhCCCc----------cccCCCccHHHhcchHHHHHHHHHHHHHHHHHhc--------------
Confidence 5 3455556666665210 2344444444679999999999999999999762
Q ss_pred CCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 399 i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++.+++...-||.-..+|||.
T Consensus 371 ------------------------~~~~g~~~~c~~gG~g~a~~~e~ 393 (394)
T PRK09051 371 ------------------------GGRYALVTMCIGGGQGIAAIFER 393 (394)
T ss_pred ------------------------CCCEEEEEEccccChhhEEEEEe
Confidence 23578888888999999999985
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=216.21 Aligned_cols=265 Identities=18% Similarity=0.177 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
...|+.+++.+||+|||+++++++ ++++|+...++. . ...+..++..+|+. .|.
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~dID----~vv~g~~~~~~~-----------------~---~~~a~~va~~lGl~~~~~~ 76 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPELID----DVIFGNVLQAGE-----------------Q---QNIARQAALLAGLPESVPA 76 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCCC-----------------C---ChHHHHHHHHcCCCCCcee
Confidence 367899999999999999999998 677776433220 0 12355688889986 489
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh----------H-------HHHHcCCCCC---C-----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT----------I-------AYYKAGMLSR---D----- 230 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~----------~-------~~~~~g~ls~---~----- 230 (831)
+.|+++|+|++.||..|+++|++|.||.+||+|+|.+...... . .....++..+ .
T Consensus 77 ~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~ 156 (386)
T TIGR01930 77 YTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRSRREGVDPGRFELEDQILKDGLTDPLNGLSMGLT 156 (386)
T ss_pred eeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCccccccccccccccCccccchhhcCccccccccCCCHHHH
Confidence 9999999999999999999999999999999998864321100 0 0000011000 0
Q ss_pred --------C-----------------CC--c---------cc-----------------c--------------------
Q psy11395 231 --------G-----------------IC--K---------TF-----------------D-------------------- 237 (831)
Q Consensus 231 --------g-----------------~~--~---------~F-----------------d-------------------- 237 (831)
| .- + |. .
T Consensus 157 a~~y~~~yG~t~e~la~vav~~~~~A~~n~~~g~~~~~i~P~a~~~~~~~~~~~~da~~r~~~t~e~v~~s~~i~~P~~~ 236 (386)
T TIGR01930 157 AENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPVSVKGRKGPVTVSTDEGIRPNTTLEKLAKLKPAFDPNGT 236 (386)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCCcCCCCe
Confidence 0 00 0 21 0
Q ss_pred -CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEe
Q psy11395 238 -KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIEC 316 (831)
Q Consensus 238 -~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~ 316 (831)
...|-..++||++++||++++.|++.+.+++++|+|++..... ..+...+...+++++|++|||+|+|||++|.
T Consensus 237 l~~~d~~~~~dGAaa~vl~s~~~A~~~~~~~~~~i~g~g~~~~~-----~~~~~~~~~~a~~~a~~~Agi~~~did~~e~ 311 (386)
T TIGR01930 237 VTAGNSSPLNDGAAALLLMSEERAKELGLTPLARIVSFAVAGVD-----PEIMGLGPVPAIPKALKKAGLSISDIDLFEI 311 (386)
T ss_pred eeCCccCCCCcceeEEEEecHHHHHHCCCCccEEEEEEEEecCC-----CccccccHHHHHHHHHHHcCCCHHHCCeeeh
Confidence 0011123589999999999999999999999999999887431 1223345578999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCC
Q psy11395 317 HGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLN 396 (831)
Q Consensus 317 HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n 396 (831)
|.+.|. .|. ...+.|+-. ..++++.+.+..+||+.+|+|+.+++.++++|+.+
T Consensus 312 ~d~fa~----~~~-~~~e~lG~~----------~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~------------ 364 (386)
T TIGR01930 312 NEAFAA----QVL-ACIKELGLD----------LEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR------------ 364 (386)
T ss_pred cchhHH----HHH-HHHHHhCCC----------hhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc------------
Confidence 987762 222 223344320 03466778888889999999999999999999873
Q ss_pred CCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 397 KNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+.++++++..+.||....+|||
T Consensus 365 --------------------------~~~~gl~~~~~~gG~g~~~~~e 386 (386)
T TIGR01930 365 --------------------------GGRYGLATICIGGGQGIAVILE 386 (386)
T ss_pred --------------------------CCCEEEEEEeccCCceEEEEeC
Confidence 1367899999999999999986
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=214.13 Aligned_cols=262 Identities=15% Similarity=0.193 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIEDA-GYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALedA-G~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|+.+++++||+|+ |+++++++ .|++|+...++. .....+..+...+|+. -|+
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~dID----~vi~g~~~~~~~-------------------~~~~~ar~~~~~~Gl~~~~p~ 88 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPKLIE----DAIVGCAMPEAE-------------------QGLNVARIGALLAGLPNSVGG 88 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHHHCC----EEEEEecCCCCC-------------------CCchHHHHHHHHcCCCCCCce
Confidence 568899999999997 99999998 688987544321 0112333355666885 379
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------h-HHHH--------------------HcCCC
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------T-IAYY--------------------KAGML 227 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------~-~~~~--------------------~~g~l 227 (831)
++|+++|+|++.|++.|++.|++|++|++||+|+|.+..... . ..+. +.|+.
T Consensus 89 ~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ygit 168 (399)
T PRK09052 89 VTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTAEKVAEQWKVS 168 (399)
T ss_pred eeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999997653210 0 0000 00000
Q ss_pred C-----------------CC-CCC----cccc-----------------------C------------------CCCc--
Q psy11395 228 S-----------------RD-GIC----KTFD-----------------------K------------------NADG-- 242 (831)
Q Consensus 228 s-----------------~~-g~~----~~Fd-----------------------~------------------~a~G-- 242 (831)
. +. |+. -|.+ . ..+|
T Consensus 169 re~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p~f~~~g~l 248 (399)
T PRK09052 169 REDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKPVFANKGSV 248 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcCCCccCCCCcE
Confidence 0 00 000 0000 0 1113
Q ss_pred -----ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 243 -----YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 243 -----~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
..++||++++||++++.|++.|.+++++|+|++....... +...+...++++||++|||+++|||++|.|
T Consensus 249 t~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~~~~-----~~~~~~~~A~~~al~~Agi~~~did~~ei~ 323 (399)
T PRK09052 249 TAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGVPPE-----IMGIGPIEAIPAALKQAGLKQDDLDWIELN 323 (399)
T ss_pred ECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEeccCCC-----ccchhHHHHHHHHHHHcCCCHHHcCEEEeC
Confidence 4479999999999999999999999999999998743221 223366789999999999999999999977
Q ss_pred CCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCC--CCcccchhhhHHHHHHHHHHHhcCccCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKT--NLGHLEAASGITGILKIILCLKNKKLPASLNFY 393 (831)
Q Consensus 318 gtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~--~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~ 393 (831)
|+.+...+ .+.|+- ...+|...++ .+||+.||+|+.+++.++++|+++
T Consensus 324 -------D~f~~~~l~~~e~lg~------------~~~~vN~~GG~la~GHp~gasG~~~~~~~~~~L~~~--------- 375 (399)
T PRK09052 324 -------EAFAAQSLAVIRDLGL------------DPSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRT--------- 375 (399)
T ss_pred -------cHHHHHHHHHHHHhCC------------CCcccCCCCchhhcCchHHHHHHHHHHHHHHHHHhc---------
Confidence 66555443 345542 1124555555 569999999999999999999872
Q ss_pred CCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 394 ~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++.+++..+-||.-..+|||.
T Consensus 376 -----------------------------~~~~g~~~~c~~gg~g~a~~~e~ 398 (399)
T PRK09052 376 -----------------------------NLKYGMVTMCVGTGMGAAGIFER 398 (399)
T ss_pred -----------------------------CCCeEEEEEcccCCceeEEEEEe
Confidence 23578888889999999999985
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=214.17 Aligned_cols=264 Identities=19% Similarity=0.207 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+.+++.++|+++|+++++++ .|++|+....+. ....++..++...|+ +-|++
T Consensus 29 ~dLa~~A~~~al~~agi~p~~ID----~vi~G~~~~~~~-------------------~~~~~~r~a~~~~Gl~~~~pa~ 85 (402)
T PRK08242 29 VRLAAGLLEALRDRNGLDTAAVD----DVVLGCVTPVGD-------------------QGADIARTAVLAAGLPETVPGV 85 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEEecCCCcc-------------------ccccHHHHHHHHcCCCCCCCeE
Confidence 45788899999999999999988 588887643221 012244556677788 35999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cch----------hHH----H-----------HHc------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSN----------TIA----Y-----------YKA------ 224 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~----------~~~----~-----------~~~------ 224 (831)
+|+.+|+|++.||+.|+++|++|++|++||+|+|.+.. |.. ... + .+.
T Consensus 86 ~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~a~~~gisRe~ 165 (402)
T PRK08242 86 QINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLIATKYGFSRED 165 (402)
T ss_pred EEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999998754 210 000 0 000
Q ss_pred ------------------CC----------------CCCCCCCc-------------cccCCC-----------------
Q psy11395 225 ------------------GM----------------LSRDGICK-------------TFDKNA----------------- 240 (831)
Q Consensus 225 ------------------g~----------------ls~~g~~~-------------~Fd~~a----------------- 240 (831)
|. +.+|...| .|+...
T Consensus 166 ~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~~~~~~~~~~~ 245 (402)
T PRK08242 166 VDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVALQKYPEVE 245 (402)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccccccccccccc
Confidence 11 12222211 243311
Q ss_pred ---------CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCc
Q psy11395 241 ---------DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311 (831)
Q Consensus 241 ---------~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dI 311 (831)
|-..++||++++||++.+.|++.|.+++++|.|++...+....... +...+++++|+++||+++||
T Consensus 246 ~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~~~~~~~~-----~~~~a~~~al~~AGl~~~DI 320 (402)
T PRK08242 246 RINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSDPTIMLT-----GPVPATRKALAKAGLTVDDI 320 (402)
T ss_pred cccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCchhhcc-----cHHHHHHHHHHHcCCCHHHC
Confidence 2225799999999999999999999999999999887543222122 23579999999999999999
Q ss_pred ceEEecCCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 312 GYIECHGTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
|++|.| |..+...+ .+.|+-. ..++.+.+.+..+||+.||+|+..++.++.+|+++
T Consensus 321 D~~ei~-------daFa~~~l~~~e~lG~~----------~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~~----- 378 (402)
T PRK08242 321 DLFELN-------EAFASVVLRFMQALDIP----------HDKVNVNGGAIAMGHPLGATGAMILGTVLDELERR----- 378 (402)
T ss_pred CEEEec-------chhhHHHHHHHHHhCCC----------CcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHhc-----
Confidence 999988 55544333 2344310 13567888888899999999999999999999762
Q ss_pred CCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 390 ~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++...-||....+|||.
T Consensus 379 ---------------------------------~~~~g~~~~c~ggG~g~a~~~e~ 401 (402)
T PRK08242 379 ---------------------------------GKRTALITLCVGGGMGIATIIER 401 (402)
T ss_pred ---------------------------------CCCeEEEEEcccCCceeEEEEEe
Confidence 23578888888999999999985
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=214.02 Aligned_cols=289 Identities=17% Similarity=0.215 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+|||+++++++ +|++|+...++.. . .... +..+...++++. |.+
T Consensus 22 ~~eL~~eA~~~AL~dAgl~~~dId----~vi~g~~~~~~~~-----------~-----~~~~--~~~~~~~~gl~~~p~~ 79 (389)
T PRK07516 22 LESLIVRVAREALAHAGIAAGDVD----GIFLGHFNAGFSP-----------Q-----DFPA--SLVLQADPALRFKPAT 79 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEEecCCccc-----------c-----ccch--hHHHHHhcCCCCCcee
Confidence 367899999999999999999988 7888875433210 0 0001 112334456654 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH-H------------------------------HHHcC
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI-A------------------------------YYKAG 225 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~-~------------------------------~~~~g 225 (831)
+|+++|+|++.||+.|+++|++|++|++||+|+|.+....... . +.+.|
T Consensus 80 ~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~y~~~yg 159 (389)
T PRK07516 80 RVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQAYFQRYG 159 (389)
T ss_pred eeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999864321100 0 00000
Q ss_pred CC-----------------CCCC-CCccccC------------------CCCcceecCceEEEEecchhhhhhCCCceEE
Q psy11395 226 ML-----------------SRDG-ICKTFDK------------------NADGYVRGEGAVMLMLKPLSVALNDHDNIYA 269 (831)
Q Consensus 226 ~l-----------------s~~g-~~~~Fd~------------------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a 269 (831)
.- .|.. .-++++. ..|-..++||++++||.+++.|++.+. ++
T Consensus 160 ~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~~~~--~v 237 (389)
T PRK07516 160 DQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARALQR--AV 237 (389)
T ss_pred CCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHhcCC--CE
Confidence 00 0000 0011111 123345799999999999999988753 57
Q ss_pred EEeeeeeccCCCCCCCCCC-CHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhc----
Q psy11395 270 IIKGSAITHNGQSNGLTAP-NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKK---- 344 (831)
Q Consensus 270 ~I~g~~~~~dg~~~~~~~p-~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~---- 344 (831)
.|+|++..++........| ...+...+++++|++|||+|+|||++|.|+++|.. ..+..++|. |........
T Consensus 238 ~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~-~~~~~e~lg--~~~~G~~~~~~~~ 314 (389)
T PRK07516 238 RFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA-ELIEYEAMG--LAPPGQGARAIRE 314 (389)
T ss_pred EEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH-HHHHHHHcC--CCCCCchHHHHHC
Confidence 8999998877543222222 34667789999999999999999999999999965 344444443 221100000
Q ss_pred ccccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccc
Q psy11395 345 NIKNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYE 421 (831)
Q Consensus 345 ~~~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~ 421 (831)
........++| |+.++ +||+.||+|+..++.+++||+...-..+ .
T Consensus 315 g~~~~~g~~pvN~sGG~la-~Ghp~gasG~~~~~e~~~QL~g~ag~rQ-------------------------------v 362 (389)
T PRK07516 315 GWTAKDGKLPVNPSGGLKA-KGHPIGATGVSMHVLAAMQLTGEAGGMQ-------------------------------I 362 (389)
T ss_pred CCccCCCCeeecCCCCccc-CCCCccHHHHHHHHHHHHHhcCCccCCc-------------------------------C
Confidence 00001122333 55664 6999999999999999999998531111 1
Q ss_pred ccccEEEEcccCC-CCceeEEEEcc
Q psy11395 422 NKLRIAGVSSFGS-GGTNAHVVLSE 445 (831)
Q Consensus 422 ~~~r~a~v~sfG~-gG~nahvil~~ 445 (831)
.+.+++++++.|. +.+++.+||++
T Consensus 363 ~~a~~~l~~~~gg~~~~~~~~vl~~ 387 (389)
T PRK07516 363 PGAKLAGVFNMGGAAVANYVSILER 387 (389)
T ss_pred CchheeeeeccCcccceEEEEEEEe
Confidence 2457889998884 44555556553
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=215.42 Aligned_cols=262 Identities=19% Similarity=0.193 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 99 QRILLELSWKTIE-DAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALe-dAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
..|+.++..++|+ ++|+++++++ .||+|+..... .....++..++...||.. |+
T Consensus 27 ~~L~~~a~~~al~r~a~i~~~~Id----~vi~G~~~~~~-------------------~~g~~~ar~~~l~~Gl~~~vp~ 83 (400)
T PRK13359 27 DDLGAVPLKALVERNPDVDWAAID----DVIYGCANQAG-------------------EDNRNVARMSLLLAGLPHGVPG 83 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC----EEEEEeccccc-------------------cccccHHHHHHHHcCCCCCCce
Confidence 4577889999999 5799999998 68888653211 001346778889999964 99
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cchh----HHH-------H---------------------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSNT----IAY-------Y--------------------- 222 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~~----~~~-------~--------------------- 222 (831)
++|+++|+||+.|++.|++.|++|++|++||||+|.|.. |..+ ..+ .
T Consensus 84 ~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m 163 (400)
T PRK13359 84 STINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLMKQLYGVDSM 163 (400)
T ss_pred EEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCccccccccCCH
Confidence 999999999999999999999999999999999998764 3100 000 0
Q ss_pred ---------HcCC------------------------CCC-------------------CCCCc------------cccC
Q psy11395 223 ---------KAGM------------------------LSR-------------------DGICK------------TFDK 238 (831)
Q Consensus 223 ---------~~g~------------------------ls~-------------------~g~~~------------~Fd~ 238 (831)
+.|+ +.. |...| .|+
T Consensus 164 g~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~l~~l~p~f~- 242 (400)
T PRK13359 164 PETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEALAKLKGVVR- 242 (400)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHHHhcCCCccC-
Confidence 0000 000 00000 122
Q ss_pred CCCcc-------eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCc
Q psy11395 239 NADGY-------VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311 (831)
Q Consensus 239 ~a~G~-------v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dI 311 (831)
.+|. .++||++++||++++.|+++|.+++++|+|++..... ..+...+...+++++|+++||+++||
T Consensus 243 -~~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~A~~~al~~AGl~~~DI 316 (400)
T PRK13359 243 -PDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE-----PRVMGIGPAPATQKLLARLGMTLDQF 316 (400)
T ss_pred -CCCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEecCC-----CCccchhHHHHHHHHHHHhCCCHHHc
Confidence 1233 2699999999999999999999999999999886321 22344566889999999999999999
Q ss_pred ceEEecCCCCCCCCHHHHHHHH--HHhhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcCccC
Q psy11395 312 GYIECHGTGTKLGDPIEIQGLK--NAFHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNKKLP 387 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~~al~--~~f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~~ip 387 (831)
||||.| |..+...+. +.|+-. ....+|+..++. +||+.||+|+..++.++.+|+.+
T Consensus 317 D~iei~-------dafa~~~l~~~e~lg~~----------~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL~~~--- 376 (400)
T PRK13359 317 DVIELN-------EAFASQGLAVLRELGLA----------DDDARVNPNGGAIALGHPLGASGARLVTTALYQLERT--- 376 (400)
T ss_pred CcCccC-------cHhHHHHHHHHHHcCCC----------CCCCCEECCCchhhcCCchhHHHHHHHHHHHHHHhhc---
Confidence 999966 777655543 345310 023578888886 79999999999999999999761
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 388 p~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++++++..+-||.-..+|||+
T Consensus 377 -----------------------------------~~~~g~~~~c~~gG~g~a~~ie~ 399 (400)
T PRK13359 377 -----------------------------------GGRFALCTMCIGVGQGIAIAIER 399 (400)
T ss_pred -----------------------------------CCCeEEEEEcccCCceeEEEEEe
Confidence 23568888888999999999985
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=212.29 Aligned_cols=263 Identities=19% Similarity=0.239 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++.+||+|||+++++++ +|++|.....+ .+. ..+..++..+|+. -|.+
T Consensus 26 ~~L~~~a~~~al~dAgl~~~~ID----~vv~g~~~~~~-----------------~~~---~~~~~~~~~~Gl~~~~p~~ 81 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPALVQ----EVFFGNVLSAN-----------------LGQ---APARQAALGAGLPPSTICT 81 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCcCC-----------------cCC---cHHHHHHHhcCCCCCCceE
Confidence 67889999999999999999998 68887532111 010 1344578889985 3889
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch---------------h-----------------H-----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN---------------T-----------------I----- 219 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~---------------~-----------------~----- 219 (831)
+|+++|+|++.|+++|+++|++|+||++||+|+|.+..... . +
T Consensus 82 ~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 161 (394)
T PLN02644 82 TVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYNDFGMGVCAE 161 (394)
T ss_pred EEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecCCCcccccccccccccccchhhhhccccccccccCCCcHHHHHH
Confidence 99999999999999999999999999999999887632100 0 0
Q ss_pred -HHHHcCCCC-----------------C-CCCCc--------------c---cc---------------------CC---
Q psy11395 220 -AYYKAGMLS-----------------R-DGICK--------------T---FD---------------------KN--- 239 (831)
Q Consensus 220 -~~~~~g~ls-----------------~-~g~~~--------------~---Fd---------------------~~--- 239 (831)
.+.+.|+.. + .+..+ | ++ .+
T Consensus 162 ~~~~~yG~tre~la~vav~s~~~a~~a~~~~~~~~ei~~~~v~~~~~~~~~~~~~de~~~~~~~~~l~~l~p~f~~~~g~ 241 (394)
T PLN02644 162 LCADQYSISREEQDAYAIQSYERAIAAQEAGAFAWEIVPVEVPGGRGRPSVIVDKDEGLGKFDPAKLRKLRPSFKEDGGS 241 (394)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCccceeeEEeccCCCCCceEeecCCCcCCCCHHHHhCCCCcccCCCCc
Confidence 000001000 0 00111 0 10 00
Q ss_pred ---CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEe
Q psy11395 240 ---ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIEC 316 (831)
Q Consensus 240 ---a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~ 316 (831)
.|-..++||++++||++++.|++.+++++++|+|++.+++....... ....+++++|+++||+|+||||+|+
T Consensus 242 vt~~~~~~~~DGaaavvl~s~~~A~~~~~~~~a~I~g~~~~~~~~~~~~~-----~~~~a~~~al~~Agi~~~Did~~Ei 316 (394)
T PLN02644 242 VTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPELFTT-----APALAIPKALKHAGLEASQVDYYEI 316 (394)
T ss_pred EeccccCCCCcceEEEEeccHHHHHHCCCCeEEEEEEEEEcCCCCcccch-----hHHHHHHHHHHHcCCCHHHCCEEEe
Confidence 12334699999999999999999999999999999987654211112 2346999999999999999999998
Q ss_pred cCCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCC
Q psy11395 317 HGTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394 (831)
Q Consensus 317 HgtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~ 394 (831)
| |..+...+ .+.|+-. ..++.+.+.+..+||+.||+|+.++++++.+|+.+
T Consensus 317 ~-------d~f~~~~l~~~e~lg~~----------~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~---------- 369 (394)
T PLN02644 317 N-------EAFSVVALANQKLLGLD----------PEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK---------- 369 (394)
T ss_pred C-------cHHHHHHHHHHHHhCCC----------ccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc----------
Confidence 8 55444333 3344310 03456666666789999999999999999999762
Q ss_pred CCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 395 ~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++.+++.++-||....+|||.
T Consensus 370 ----------------------------~~~~g~~~~~~~gg~g~a~~~e~ 392 (394)
T PLN02644 370 ----------------------------NGKYGVAGICNGGGGASAIVVEL 392 (394)
T ss_pred ----------------------------CCCeEEEEEeccCCceeEEEEEe
Confidence 12457777788899999999985
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=211.80 Aligned_cols=264 Identities=18% Similarity=0.213 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|||+.+++++ .|++|+...+.. . ...++..++..+|+. -|.+
T Consensus 28 ~eLa~~A~~~AL~~ag~~~~dID----~vi~g~~~~~~~----------------~---g~~~a~~~~~~lGl~~~~p~~ 84 (391)
T PRK07661 28 DDLGALVVKETLKRAGNYEGPID----DLIIGCAMPEAE----------------Q---GLNMARNIGALAGLPYTVPAI 84 (391)
T ss_pred HHHHHHHHHHHHHhcCCChhHCC----EEEEEecccccc----------------c---cchHHHHHHHHcCCCCCccee
Confidence 56889999999999998777777 588886432210 0 012455688999997 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc-----------------hh---HH------HHHcC-----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS-----------------NT---IA------YYKAG----- 225 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~-----------------~~---~~------~~~~g----- 225 (831)
+|+++|+||+.|++.|++.|++|++|++||+|+|.+.... .+ +. ..+.|
T Consensus 85 ~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a~~~~~~~g~tre~ 164 (391)
T PRK07661 85 TINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGHVVRPNPRLVEAAPEYYMGMGHTAEQVAVKYGISRED 164 (391)
T ss_pred ehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCccccccCCCccccccccchhhhHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999765321 00 00 00111
Q ss_pred -------------------CCCCC--------------C-------------CC------------cc-cc-----CCCC
Q psy11395 226 -------------------MLSRD--------------G-------------IC------------KT-FD-----KNAD 241 (831)
Q Consensus 226 -------------------~ls~~--------------g-------------~~------------~~-Fd-----~~a~ 241 (831)
.+... + .. +| |. ...|
T Consensus 165 ~a~~av~s~~~a~~n~~ag~~~~ei~pi~~~~~~~~~~~~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~f~~~g~lt~~~ 244 (391)
T PRK07661 165 QDAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNVKGSVTAGN 244 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceeeeecccccccccCcccccceeEecCCCCCCCCCHHHHhcCCCCcCCCCCEeccc
Confidence 11000 0 00 00 10 0112
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
-..++||++++||++++.|++.|.+++++|+|++..++.. .+...+...+++++|++|||+++|||+||.|
T Consensus 245 ~~~~~DGAaavvl~s~~~A~~~g~~~~~~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~agl~~~did~~ei~---- 315 (391)
T PRK07661 245 SSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVPP-----EVMGIGPIAAIPKALKLAGLELSDIGLFELN---- 315 (391)
T ss_pred cCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecCCC-----cccchHHHHHHHHHHHHcCCCHHHCCEEEeC----
Confidence 2237999999999999999999999999999999875422 1223467889999999999999999999976
Q ss_pred CCCCHHHHHHHHH--HhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKN--AFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 322 ~~gD~~E~~al~~--~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
|..+...+.. .|+-. ..++++.+.+..+||+.||+|+..++.++.+|+.+
T Consensus 316 ---d~f~~~~l~~~e~lg~~----------~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~~--------------- 367 (391)
T PRK07661 316 ---EAFASQSIQVIRELGLD----------EEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRR--------------- 367 (391)
T ss_pred ---CHHHHHHHHHHHHcCCC----------CCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 7777777663 44310 03466777777789999999999999999999762
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++.+++..+-||.-..+|||.
T Consensus 368 -----------------------~~~~g~~~~c~~gg~g~a~~~e~ 390 (391)
T PRK07661 368 -----------------------NEQFGIVTMCIGGGMGAAGVFEL 390 (391)
T ss_pred -----------------------CCCeEEEEEccccChhhEEEEEe
Confidence 23578888888999999999985
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=212.00 Aligned_cols=264 Identities=17% Similarity=0.185 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIE-DAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALe-dAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|+.++..++|+ |+|+++++++ .||+|+.... +.....++..++..+|+. -|+
T Consensus 26 ~~L~~~a~~~al~~~a~i~~~~Id----~v~~G~~~~~-------------------~~~~~~~ar~~~~~~Gl~~~~p~ 82 (400)
T TIGR02430 26 DDLAAVPIKALLARNPQLDWAAID----DVIYGCANQA-------------------GEDNRNVARMAALLAGLPVSVPG 82 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC----EEEEEecccc-------------------ccccccHHHHHHHHcCCCCCCce
Confidence 5678999999999 6899999888 5888864321 000123566789999996 499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-------H---------------------H-H-----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-------I---------------------A-Y----- 221 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-------~---------------------~-~----- 221 (831)
++|+++|+||+.|++.|++.|++|++|++||||+|.+...... + . +
T Consensus 83 ~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 162 (400)
T TIGR02430 83 TTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPLMKALYGVDSM 162 (400)
T ss_pred EEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCcccccccccCcH
Confidence 9999999999999999999999999999999999987642100 0 0 0
Q ss_pred --------HHcC-------------------------------------------CCCCCCCCc-------------ccc
Q psy11395 222 --------YKAG-------------------------------------------MLSRDGICK-------------TFD 237 (831)
Q Consensus 222 --------~~~g-------------------------------------------~ls~~g~~~-------------~Fd 237 (831)
.+.| .+.++...| .|+
T Consensus 163 ~~~ae~~a~~ygisre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e~l~~~~~v~~ 242 (400)
T TIGR02430 163 PETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLEGLAKLKPVVR 242 (400)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHHHHhcCCCccc
Confidence 0000 011111111 121
Q ss_pred C-----CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcc
Q psy11395 238 K-----NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLG 312 (831)
Q Consensus 238 ~-----~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId 312 (831)
. ..|-..++||++++||++++.|++.|.+++++|+|++..+.... +...+...+++++|++|||+|+|||
T Consensus 243 p~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DID 317 (400)
T TIGR02430 243 PDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGVEPR-----IMGIGPVPATQKLLARAGLSIDQFD 317 (400)
T ss_pred CCCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecCCCc-----cccchHHHHHHHHHHHhCCCHHHCC
Confidence 1 11222369999999999999999999999999999987653221 2334567899999999999999999
Q ss_pred eEEecCCCCCCCCHHHHHH--HHHHhhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 313 YIECHGTGTKLGDPIEIQG--LKNAFHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 313 ~ie~HgtGT~~gD~~E~~a--l~~~f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
|+|.| |..+... ..+.|+-.. ...+|+..++. +||+.||+|+..++.++.+|+.+
T Consensus 318 ~~ei~-------D~f~~~~l~~~e~lG~~~----------~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qLr~~---- 376 (400)
T TIGR02430 318 VIELN-------EAFAAQALAVLRELGLAD----------DDARVNPNGGAIALGHPLGASGARLVLTALRQLERS---- 376 (400)
T ss_pred CcccC-------cHHHHHHHHHHHHcCCCC----------CCCeECCCCchHhccChHHHHHHHHHHHHHHHHHhc----
Confidence 99966 6755444 345564210 12468888885 79999999999999999999761
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++.+++...-||.-..+|||.
T Consensus 377 ----------------------------------~~~~g~~~~c~~gG~g~a~~~e~ 399 (400)
T TIGR02430 377 ----------------------------------GGRYALCTMCIGVGQGIALAIER 399 (400)
T ss_pred ----------------------------------CCCEEEEEEccccChhhEEEEEe
Confidence 23567888888899999999985
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=213.88 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..|+.+++++||+|||+++++++ +|++|+....+. .....+..++..+|+.+ |.+
T Consensus 72 ~eLa~eA~~~AL~dAgl~~~dID----~vv~G~~~~~~~-------------------~~~~~~r~~a~~~Gl~~~~pa~ 128 (452)
T PLN02287 72 DDLLAPVLKAVVEKTGLNPSEVG----DIVVGTVLAPGS-------------------QRANECRMAAFYAGFPETVPVR 128 (452)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeecCccc-------------------ccchHHHHHHHHCCCCCCcceE
Confidence 77899999999999999999998 688886543321 01123345667789964 889
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh---------------------HH------HHHcCCCC-
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT---------------------IA------YYKAGMLS- 228 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~---------------------~~------~~~~g~ls- 228 (831)
+|+++|+|++.|++.|+++|++|.+|++||+|+|.+...... +. +.+.|+..
T Consensus 129 ~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~y~~~yGitrE 208 (452)
T PLN02287 129 TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSENVAERFGVTRE 208 (452)
T ss_pred EEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCCchhhccccCchhhccccccccCcCHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999976432100 00 00111000
Q ss_pred ----------------CC-CCCc---------------------cccCC---------------------------CCcc
Q psy11395 229 ----------------RD-GICK---------------------TFDKN---------------------------ADGY 243 (831)
Q Consensus 229 ----------------~~-g~~~---------------------~Fd~~---------------------------a~G~ 243 (831)
+. ++.+ .++.+ .|-.
T Consensus 209 ~la~vAvksh~nAa~np~ag~f~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~~~e~l~~l~~v~~~~g~lt~~~~s 288 (452)
T PLN02287 209 EQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNGTTTAGNSS 288 (452)
T ss_pred HHHHHHHHHHHHHHhhhhcCCcccceeeeeccccccccCCccceeecccCCCCCCCCHHHHhcCCCccCCCCCEeccccC
Confidence 00 1110 11100 1233
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCC
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKL 323 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~ 323 (831)
.++||++++||.+++.|++.+.+|++++.+++... .. ..+...+...+++++|++|||+++|||++|.|...+.
T Consensus 289 ~~sDGAaalvl~see~A~~~~~~~~a~~~~~~~~~--~~---~~~~~~~~~~A~~~al~~Agl~~~DID~~Ei~daFa~- 362 (452)
T PLN02287 289 QVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVG--VD---PAVMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFAS- 362 (452)
T ss_pred CcCCceEEEEEeeHHHHHHCCCCeEEEEEEEeecc--CC---CccchHHHHHHHHHHHHHcCCCHHHCCEEEecchHHH-
Confidence 47999999999999999999999999999977432 11 1223345678999999999999999999999933331
Q ss_pred CCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCC
Q psy11395 324 GDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403 (831)
Q Consensus 324 gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~ 403 (831)
.|+..+. .|+- ...++.+.+.+..+||+.||||+..++.++.+|+++-
T Consensus 363 ---~~l~~~e-~lG~----------~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~~~------------------ 410 (452)
T PLN02287 363 ---QFVYCCK-KLGL----------DPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRG------------------ 410 (452)
T ss_pred ---HHHHHHH-HcCC----------CccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHhcC------------------
Confidence 1222221 2221 0135667777777899999999999999999997620
Q ss_pred CCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 404 ~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
...++++++-..-||.-..+|||....
T Consensus 411 ------------------~~~~~gl~~~c~ggG~g~a~~ie~~~~ 437 (452)
T PLN02287 411 ------------------KDCRFGVVSMCIGTGMGAAAVFERGDS 437 (452)
T ss_pred ------------------CCCCeeEEEEccccCceeEEEEEecCc
Confidence 012568888889999999999998653
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-21 Score=213.45 Aligned_cols=267 Identities=16% Similarity=0.156 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCcccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~tv 178 (831)
..|+.+++.+||+|+|+++++++ .|++|+...++.. .++ .. ....+...++.+.|+++|
T Consensus 33 ~~L~~~a~~~AL~~agl~~~dID----~vi~g~~~~~~~~---------------~~~-~~-~~~~l~a~~~~~~p~~~V 91 (394)
T PRK06445 33 EELAAMLINRLIEKTGIKPEEID----DIITGCALQVGEN---------------WLY-GG-RHPIFLARLPYNIPAMAV 91 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----eeEEEeecCCCcc---------------ccc-HH-HHHHHHcCCCCCCcchhh
Confidence 46889999999999999999998 5888875432210 000 00 111233334445699999
Q ss_pred ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc--------h---h----------------HH------HHHcC
Q psy11395 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS--------N---T----------------IA------YYKAG 225 (831)
Q Consensus 179 ~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~--------~---~----------------~~------~~~~g 225 (831)
+++|+|++.|++.|+++|++|.+|++||+|+|.+.... . . +. +.+.|
T Consensus 92 ~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~yg 171 (394)
T PRK06445 92 DRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTAEKLAEEAG 171 (394)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999654211 0 0 00 00000
Q ss_pred ------------------------CC------------------CCCCCCc-------------cccC-----CCCccee
Q psy11395 226 ------------------------ML------------------SRDGICK-------------TFDK-----NADGYVR 245 (831)
Q Consensus 226 ------------------------~l------------------s~~g~~~-------------~Fd~-----~a~G~v~ 245 (831)
.+ .++...| .|+. ..|-..+
T Consensus 172 itre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~~~g~lt~~~~~~~ 251 (394)
T PRK06445 172 IKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPDGVITAGNSSPL 251 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccCCCCcEecCcCCCC
Confidence 00 1110001 0110 0112336
Q ss_pred cCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCC
Q psy11395 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGD 325 (831)
Q Consensus 246 gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD 325 (831)
+||++++||++.+.|++.+.+++++|+|++..++.. .+...+...++++||+++||+++||||+|.|...+
T Consensus 252 ~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~Agl~~~dId~~e~~d~f~---- 322 (394)
T PRK06445 252 NSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVPP-----AIMGKGPVPASKKALEKAGLSVKDIDLWEINEAFA---- 322 (394)
T ss_pred CCceEEEEEecHHHHHHCCCCceEEEEEEEEeccCC-----chhcchHHHHHHHHHHHcCCCHHHcCEEEecccch----
Confidence 999999999999999999999999999998875321 12234668899999999999999999999998776
Q ss_pred HHHHHHHHHHh-hhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCC
Q psy11395 326 PIEIQGLKNAF-HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDS 404 (831)
Q Consensus 326 ~~E~~al~~~f-~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~ 404 (831)
..|+..+.... .. .++.+.+....+||+.||+|+..++.++.+|+.
T Consensus 323 ~~~l~~~e~lg~~~------------~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~--------------------- 369 (394)
T PRK06445 323 VVVLYAIKELGLDP------------ETVNIKGGAIAIGHPLGATGARIVGTLARQLQI--------------------- 369 (394)
T ss_pred HHHHHHHHHhCCCc------------cccCCCCCHHHcCCCccchHHHHHHHHHHHHHh---------------------
Confidence 34555555442 21 244555555556999999999999999999971
Q ss_pred CceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 405 HLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 405 ~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+.|+++++..|-||....+|||.
T Consensus 370 -----------------~~~~~gl~~~~~~gg~g~a~~~e~ 393 (394)
T PRK06445 370 -----------------KGKDYGVATLCVGGGQGGAVVLER 393 (394)
T ss_pred -----------------cCCCEEEEEEcccCChhhEEEEEc
Confidence 134679999999999999999985
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=211.73 Aligned_cols=264 Identities=16% Similarity=0.146 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+.+++.+||+|||+++++++ .|++|+...++. ...++...+..+|+ +.|++
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~dID----~vi~G~~~~~~~--------------------~~~~~~~~~l~ag~~~~~p~~ 87 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPEQID----EVVMGCVLPAGQ--------------------GQAPARQAALGAGLPLSVGCT 87 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEEecCCCcc--------------------chHHHHHHHHcCCCCCCccEe
Confidence 56889999999999999999998 588886542221 01133334445565 35889
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cc--h-------------hHHH--HHc-CCCC---------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PS--N-------------TIAY--YKA-GMLS--------- 228 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~--~-------------~~~~--~~~-g~ls--------- 228 (831)
+|+++|+||+.|++.|+++|++|++|++||+|+|.+.. |. . ...+ ... ..+.
T Consensus 88 ~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 167 (397)
T PRK06954 88 TVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAYDKGRLMGTFA 167 (397)
T ss_pred eccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCCCcccCcccccccccCcchhhhhhcccccccccccCCCHHHHH
Confidence 99999999999999999999999999999999998752 21 0 0000 000 0000
Q ss_pred -----------------------------CCCCC----ccccCC------------------------------CCc---
Q psy11395 229 -----------------------------RDGIC----KTFDKN------------------------------ADG--- 242 (831)
Q Consensus 229 -----------------------------~~g~~----~~Fd~~------------------------------a~G--- 242 (831)
+.+.. .|++.. .+|
T Consensus 168 ~~~~~~ygitre~~d~~A~~s~~~a~~a~~~~~~~~~~~pv~v~~~~~~~~v~~D~~pr~~~~~~l~~l~~~f~~~g~lt 247 (397)
T PRK06954 168 EECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKKGDTVIDRDEQPFKANPEKIPTLKPAFSKTGTVT 247 (397)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEEeccCCCCeEeccCCCcCCCCHHHHhCCCCccCCCCcEE
Confidence 00000 011100 112
Q ss_pred ----ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 243 ----YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 243 ----~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
..++||++++||++++.|++.|.+++++|.|++........ ...+...+++++|+++||+|+|||++|.|.
T Consensus 248 ~~~~~~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~~~~-----~~~~~~~a~~~al~~agl~~~Did~~ei~d 322 (397)
T PRK06954 248 AANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQAPSK-----FTTAPVGAIRKLFEKNGWRAAEVDLFEINE 322 (397)
T ss_pred ccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccCccc-----ccchHHHHHHHHHHHcCCCHHHCCEEehhh
Confidence 23699999999999999999999999999998764322111 112457899999999999999999999996
Q ss_pred CCCCCCCHHHHHHHHHH-hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
..+. .|+..+... |.. .++++.+.+..+||+.||+|+..++.++++|+.+
T Consensus 323 ~fa~----~~l~~~e~lg~~~------------~~vN~~GG~~a~Ghp~gasG~~~~~~~~~qL~~~------------- 373 (397)
T PRK06954 323 AFAV----VTMAAMKEHGLPH------------EKVNVNGGACALGHPIGASGARILVTLIGALRAR------------- 373 (397)
T ss_pred HHHH----HHHHHHHHhCCCc------------ccCCcCCChHHhcccHHHHHHHHHHHHHHHHHhc-------------
Confidence 6653 344444333 211 3567788888889999999999999999999762
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++.+++..+-||.-+.+|||.
T Consensus 374 -------------------------~g~~~v~~~c~~gg~g~a~~~e~ 396 (397)
T PRK06954 374 -------------------------GGKRGVASLCIGGGEATAMGIEL 396 (397)
T ss_pred -------------------------CCCeEEEEEccccchhhEEEEEe
Confidence 12457778888899999999985
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=211.03 Aligned_cols=267 Identities=13% Similarity=0.168 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 99 QRILLELSWKTIEDA-GYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedA-G~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
..|+.+++++||+|+ |+++++|+ +|++|...... ..+ ..++..++..+|+.+ |++
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~dID----~vv~g~~~~~~----------------~~g---~~~~~~~a~~lGl~~~p~~ 84 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPTDID----DLMLGCGLPGG----------------EQG---FNMARVVAVLLGYDFLPGT 84 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC----EEEEEcccccc----------------ccc---CCHHHHHHHHcCCCCCCee
Confidence 568899999999997 99999998 68887532110 001 124567899999976 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------------hH---------------HHHH-----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------------TI---------------AYYK----- 223 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------------~~---------------~~~~----- 223 (831)
+|+++|+|++.|++.|+++|++|++|++||+|+|.+..... +. .+..
T Consensus 85 ~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 164 (406)
T PRK07851 85 TVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAEAWHDPREDG 164 (406)
T ss_pred eeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecccCcccccccccccCchhhhhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999886422100 00 0000
Q ss_pred -------------------------------------------cCCCC---------------CCCCCc-cccC------
Q psy11395 224 -------------------------------------------AGMLS---------------RDGICK-TFDK------ 238 (831)
Q Consensus 224 -------------------------------------------~g~ls---------------~~g~~~-~Fd~------ 238 (831)
.+... ++...+ +++.
T Consensus 165 ~~~~~~~amg~~a~~~~~~yg~~re~~~~~a~~s~~~a~~A~~n~~~a~~~~p~~~p~~~~~~~d~~~r~~~t~e~v~~s 244 (406)
T PRK07851 165 LLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSTDDGPRAGTTYEKVSQL 244 (406)
T ss_pred ccccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCCCccceeeeecCCCceeCCCCCccCCcCHHHHhcC
Confidence 00000 000000 0100
Q ss_pred ----CC-------CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy11395 239 ----NA-------DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307 (831)
Q Consensus 239 ----~a-------~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~ 307 (831)
+. |-..++||++++||.+++.|++.|.+++++|+|++...+.. .+...+...++++||++|||+
T Consensus 245 ~~v~~P~~~lt~~d~~~~~DGaaa~vl~s~e~A~~~~~~~~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~Agi~ 319 (406)
T PRK07851 245 KPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLSP-----EIMGLGPVEASKQALARAGMS 319 (406)
T ss_pred CCccCCCCcEecCcCCccCCceeEEEEccHHHHHHcCCCccEEEEEEEEccCCC-----CccchhHHHHHHHHHHHhCCC
Confidence 11 22236999999999999999999999999999998764321 122335678999999999999
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccC
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ip 387 (831)
++||||+|.|...+. .|...+ +.|+-. ..++.+.+.+..+||+.||+|+.+++.++.+|+.+
T Consensus 320 ~~did~~ei~d~f~~----~~l~~l-e~lg~~----------~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL~~~--- 381 (406)
T PRK07851 320 IDDIDLVEINEAFAA----QVLPSA-RELGID----------EDKLNVSGGAIALGHPFGMTGARITTTLLNNLQTH--- 381 (406)
T ss_pred HHHCCeehhhhHHHH----HHHHHH-HHhCCC----------ccccCCCCChHhhcCcHHHHHHHHHHHHHHHHHhc---
Confidence 999999998844432 122222 222210 02566777777889999999999999999999752
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 388 p~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+.++.+++..+.||.-..+|||..
T Consensus 382 -----------------------------------~~~~g~~~~~~~gg~g~a~~~e~~ 405 (406)
T PRK07851 382 -----------------------------------DKTFGLETMCVGGGQGMAMVLERL 405 (406)
T ss_pred -----------------------------------CCCeEEEEEccccChhhEEEEEec
Confidence 124688888899999999999864
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=207.95 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|+....+. ...++..++..+|+. -|++
T Consensus 27 ~eLa~~A~~~AL~~agl~~~dID----~vv~g~~~~~~~--------------------~~~~a~~va~~~Gl~~~~p~~ 82 (404)
T PRK06205 27 EELAATVIRALVERTGIDPARID----DVIFGQGYPNGE--------------------APAIGRVAALDAGLPVTVPGM 82 (404)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCCC--------------------CChHHHHHHHHcCCCCCCcee
Confidence 56889999999999999999998 688887644331 112455788889986 4899
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh---------H----HHHH--------------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT---------I----AYYK-------------------- 223 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~---------~----~~~~-------------------- 223 (831)
+|+++|+|++.|++.|+++|++|.+|++||+|+|.+.....+ . .+..
T Consensus 83 ~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 162 (404)
T PRK06205 83 QLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRRFPVPGGMI 162 (404)
T ss_pred ehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhccCcccccccccccccCcchhhhhhccCcccccccccCCCCCHH
Confidence 999999999999999999999999999999999876421100 0 0000
Q ss_pred ---------cC------------------------CC-------------------CCCCCC------------c-ccc-
Q psy11395 224 ---------AG------------------------ML-------------------SRDGIC------------K-TFD- 237 (831)
Q Consensus 224 ---------~g------------------------~l-------------------s~~g~~------------~-~Fd- 237 (831)
.| .+ .++... + .|+
T Consensus 163 ~~a~~~~~~~gitre~~~~~Av~sh~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~~ 242 (404)
T PRK06205 163 ETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDPTVVDRDEHPRADTTLESLAKLRPIMGK 242 (404)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeEecCCCCCceEeccCCCCCCCCCHHHHhcCCCcCcc
Confidence 00 00 000000 0 110
Q ss_pred -------CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Q psy11395 238 -------KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 238 -------~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~d 310 (831)
.-.|-..++||++++||.+++.|++.+.+++++|.|++...+.... ...+...++++||++|||+++|
T Consensus 243 ~~p~g~lt~~~~~~~~DGAaa~vl~se~~A~~~~~~p~~~i~g~~~~~~~~~~-----~~~~~~~a~~~al~~Agl~~~D 317 (404)
T PRK06205 243 QDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEPSR-----MGIGPVPATEKALARAGLTLDD 317 (404)
T ss_pred CCCCCceeCcccCCCCCceeEEEEecHHHHHHCCCCceEEEEEEEEeccCCcc-----ccccHHHHHHHHHHHcCCCHHH
Confidence 0111223589999999999999999999999999999887543221 1135678999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHH--HHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLK--NAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~--~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
||++|.|. ..+...+. +.|+-.. .. ..++.+.+.+..+||+.||+|+..++.++.+|+.+
T Consensus 318 id~~ei~d-------~f~~~~l~~~e~lg~~~--~~-----~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~---- 379 (404)
T PRK06205 318 IDLIELNE-------AFAAQVLAVLKEWGFGA--DD-----EERLNVNGSGISLGHPVGATGGRILATLLRELQRR---- 379 (404)
T ss_pred CCEeeecc-------HHHHHHHHHHHHhCcCc--cc-----CCCcCCCCCHHhhCCChhhhHHHHHHHHHHHHHhc----
Confidence 99999884 44333332 2232100 00 02456666677789999999999999999999862
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
..++++++..+-||.-..+|||..
T Consensus 380 ----------------------------------~~~~gl~~~c~~gg~g~a~~~e~~ 403 (404)
T PRK06205 380 ----------------------------------QARYGLETMCIGGGQGLAAVFERV 403 (404)
T ss_pred ----------------------------------CCCeEEEEEeccCChhhEEEEEec
Confidence 236789999999999999999863
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=209.98 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++.+||+|||+++++++ +|++|+..... .+ ...+..+...+|+. .|.+
T Consensus 27 ~~La~~A~~~AL~dAgl~~~dID----~vi~g~~~~~~-----------------~~---~~~~~~~~~~~gl~~~~~~~ 82 (393)
T PRK05790 27 VELGAIVIKAALERAGVPPEQVD----EVIMGQVLQAG-----------------AG---QNPARQAALKAGLPVEVPAL 82 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----eEEEEEecCCC-----------------CC---CcHHHHHHHHcCCCCCCcee
Confidence 57889999999999999999998 68887643210 00 01233355566775 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh---------H----HHHH------cCCCCCC-------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT---------I----AYYK------AGMLSRD------- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~---------~----~~~~------~g~ls~~------- 230 (831)
+|+++|+|++.||..|+++|++|.+|++||+|+|.+...... . .... .+...+.
T Consensus 83 ~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 162 (393)
T PRK05790 83 TINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAFNGYHMGITAE 162 (393)
T ss_pred eecccchHHHHHHHHHHHHHHcCCCCEEEEEeeeccccCcccccccccccccCcchhhhhhcccccccccCCCCHHHHHH
Confidence 999999999999999999999999999999999875321100 0 0000 0000000
Q ss_pred ------C----------------CCc------------c----------------------------------ccC----
Q psy11395 231 ------G----------------ICK------------T----------------------------------FDK---- 238 (831)
Q Consensus 231 ------g----------------~~~------------~----------------------------------Fd~---- 238 (831)
| ..+ | ||.
T Consensus 163 ~y~~~yG~tre~la~vav~~~~~A~~~~~~g~~~~~i~P~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~~~~v~~~~g~l 242 (393)
T PRK05790 163 NLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQRKGDPVVVDTDEHPRPDTTAESLAKLRPAFDKDGTV 242 (393)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeEEecCCCCCceEecCCCCCCCCCCHHHHhCCCCccCCCCCE
Confidence 0 000 1 111
Q ss_pred -CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 239 -NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 239 -~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
..|-..++||++++||++.+.|++.+.+++++|+|++..+... .+...+...+++++|++||++|+|||++|+|
T Consensus 243 t~~d~~~~~DGAaavvl~s~e~a~~~~~~~~~~I~g~~~~~~~~-----~~~~~~~~~a~~~a~~~Agi~~~did~~e~~ 317 (393)
T PRK05790 243 TAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVDP-----AIMGIGPVPAIRKALEKAGWSLADLDLIEIN 317 (393)
T ss_pred eCCcCCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCC-----CccchhHHHHHHHHHHHcCCCHHHCCEEEeC
Confidence 0023457999999999999999999999999999998864321 1122355689999999999999999999988
Q ss_pred CCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 318 gtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
. ..+...+ .+.|+-. ..++.+.+.+..+||+.||+|+..++.++.+|+.+
T Consensus 318 d-------~f~~~~l~~~e~lg~~----------~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~~----------- 369 (393)
T PRK05790 318 E-------AFAAQALAVEKELGLD----------PEKVNVNGGAIALGHPIGASGARILVTLLHEMKRR----------- 369 (393)
T ss_pred c-------HHHHHHHHHHHHhCCC----------hhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHhc-----------
Confidence 4 4444432 2334310 03566778888889999999999999999999873
Q ss_pred CCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 396 n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.|+++++..|-||..+.+|||.
T Consensus 370 ---------------------------~~~~gl~~~~~~~g~g~~~~~e~ 392 (393)
T PRK05790 370 ---------------------------GAKKGLATLCIGGGQGVALIVER 392 (393)
T ss_pred ---------------------------CCCeEEEEEeccCCceeEEEEEc
Confidence 12679999999999999999986
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=206.06 Aligned_cols=268 Identities=17% Similarity=0.221 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIE-DAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALe-dAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|..+++++||+ |+|+++++++ .|++|...... .....++..++...|+. -|+
T Consensus 28 ~~L~~~~~~~al~~~agl~~~~Id----~vi~g~~~~~~-------------------~~g~~~ar~~~~~~Gl~~~~p~ 84 (387)
T PRK08947 28 EDLSAHLMRSLLARNPALDPAEID----DIIWGCVQQTL-------------------EQGFNIARNAALLAGIPHSVPA 84 (387)
T ss_pred HHHHHHHHHHHHHhccCcChHHhC----eEEEEeccccc-------------------cccccHHHHHHHHcCCCCCCcc
Confidence 6788889999999 4899999988 68888642111 00012455688889986 388
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------------------hHH------HHHcC-----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------------------TIA------YYKAG----- 225 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------------------~~~------~~~~g----- 225 (831)
++|+++|+||+.|++.|+++|++|++|++||||+|.+..... .+. +.+.|
T Consensus 85 ~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ygisre~ 164 (387)
T PRK08947 85 VTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMMGLTAEMLGKMHGISREQ 164 (387)
T ss_pred eeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccCccccccCcchhhhhhccccchHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999998753210 000 00111
Q ss_pred -------------------CC-------------------CCCCCCc-------------cccC------CCCcceecCc
Q psy11395 226 -------------------ML-------------------SRDGICK-------------TFDK------NADGYVRGEG 248 (831)
Q Consensus 226 -------------------~l-------------------s~~g~~~-------------~Fd~------~a~G~v~gEG 248 (831)
.+ .++...| .|+. ..|-..++||
T Consensus 165 ~~~~avksh~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~~~~~~sDG 244 (387)
T PRK08947 165 QDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAGTSSALSDG 244 (387)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEeeeeecCCCCCceeecCCCCCcCCCCHHHHhcCCceeeCCCCcEEccccCCcCCc
Confidence 00 1121111 1221 1233347999
Q ss_pred eEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHH
Q psy11395 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIE 328 (831)
Q Consensus 249 aaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E 328 (831)
++++||.+++.|++.+++++++|+|++.++.... ... .+...+++++|+++||+|+|||++|.|...+. .|
T Consensus 245 AaAvvl~s~~~A~~~g~~p~~~I~g~~~~~~~~~--~~~---~~~~~a~~~al~~Agl~~~DId~~El~d~F~~----~~ 315 (387)
T PRK08947 245 ASAMLVMSESRAKELGLKPRARIRSMAVAGCDPS--IMG---YGPVPATQKALKRAGLSISDIDVFELNEAFAA----QS 315 (387)
T ss_pred eEEEEEccHHHHHHCCCCccEEEEEEEEcCcCcc--ccc---ccHHHHHHHHHHHcCCCHHHCCEEEecccchH----HH
Confidence 9999999999999999999999999998743211 111 23467889999999999999999999977763 34
Q ss_pred HHHHHHH-hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCce
Q psy11395 329 IQGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLY 407 (831)
Q Consensus 329 ~~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~ 407 (831)
+..+... |.+.. ..++.++.-.-.+||+.||+|+..++.++.+|+.
T Consensus 316 l~~~e~lg~~~~~---------~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~L~~------------------------ 362 (387)
T PRK08947 316 LPCLKDLGLLDKM---------DEKVNLNGGAIALGHPLGCSGARISTTLLNLMER------------------------ 362 (387)
T ss_pred HHHHHHcCCCCCC---------CCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh------------------------
Confidence 4444433 22110 0234444444456999999999999999999975
Q ss_pred eecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 408 IIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 408 ~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+.|+++++++|-||.-+.+|||.
T Consensus 363 --------------~~~~~gl~~~~~g~G~g~a~~~e~ 386 (387)
T PRK08947 363 --------------KDAQFGLATMCIGLGQGIATVFER 386 (387)
T ss_pred --------------cCCCEEEEEEeecccceeEEEEEe
Confidence 023678999998888877788874
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=205.34 Aligned_cols=264 Identities=19% Similarity=0.197 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIE-DAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALe-dAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|+.++..++|+ |+|+++++++ .|++|+..... .....++..++...||. -|+
T Consensus 27 ~~L~~~a~~~al~~~agi~~~~Id----~v~~G~~~~~~-------------------~~~~~~ar~~~~~~Gl~~~vP~ 83 (401)
T PRK09050 27 DDLGAVPLKALMARNPGVDWEAVD----DVIYGCANQAG-------------------EDNRNVARMSALLAGLPVSVPG 83 (401)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC----EEEEEeccccc-------------------cccchHHHHHHHHcCCCCCCce
Confidence 5688899999999 6899999888 58888643211 11123566688999993 499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-------H---------------------H-H-----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-------I---------------------A-Y----- 221 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-------~---------------------~-~----- 221 (831)
++|+++|+||+.|++.|++.|++|++|++||||+|.+...... + . +
T Consensus 84 ~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 163 (401)
T PRK09050 84 TTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWRFVNPLMKAQYGVDSM 163 (401)
T ss_pred EEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCcccccchhhhcccCcccccccccccccCCccccccccccH
Confidence 9999999999999999999999999999999999987642200 0 0 0
Q ss_pred --------HHcCC------------------------C-------------------CCCCCCc------------c-cc
Q psy11395 222 --------YKAGM------------------------L-------------------SRDGICK------------T-FD 237 (831)
Q Consensus 222 --------~~~g~------------------------l-------------------s~~g~~~------------~-Fd 237 (831)
.+.|+ + .++...| | |+
T Consensus 164 g~~ae~~a~~~gisre~~D~~A~~S~k~a~~A~~ng~~~~ei~p~~~~~~~~~~~~~~~da~~r~~~t~e~l~~l~~~~~ 243 (401)
T PRK09050 164 PETAENVAEDYNISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQKKGDPVVVDRDEHPRPETTLEALAKLKPVFR 243 (401)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCCccc
Confidence 00000 0 0111111 1 22
Q ss_pred C-----CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcc
Q psy11395 238 K-----NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLG 312 (831)
Q Consensus 238 ~-----~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId 312 (831)
. -.|-..++||++++||++++.|++.|.+++++|+|++....... ....+...+++++|++|||+++|||
T Consensus 244 ~~g~lt~~n~s~~~DGAaa~vl~s~~~A~~lg~~p~a~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DId 318 (401)
T PRK09050 244 PDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILGMATAGVEPR-----IMGIGPAPATRKLLARLGLTIDQFD 318 (401)
T ss_pred CCCEEeCCCcCCCcCceEEEEEecHHHHHHCCCCccEEEEEEEEeccCCc-----cccchHHHHHHHHHHHcCCCHHHCC
Confidence 1 11222369999999999999999999999999999988643221 1223457899999999999999999
Q ss_pred eEEecCCCCCCCCHHHHHHHH--HHhhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 313 YIECHGTGTKLGDPIEIQGLK--NAFHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 313 ~ie~HgtGT~~gD~~E~~al~--~~f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
++|.| |..+...+. +.|+-. ....+|+..++. +||+.||+|+..++.++.+|+.+
T Consensus 319 ~~ei~-------D~f~~~~l~~~e~lg~~----------~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qLr~~---- 377 (401)
T PRK09050 319 VIELN-------EAFAAQGLAVLRQLGLA----------DDDARVNPNGGAIALGHPLGMSGARLVLTALHQLERT---- 377 (401)
T ss_pred ccccC-------cHhHHHHHHHHHHcCCC----------CCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHHHhc----
Confidence 99976 666665543 334310 012567778886 69999999999999999999762
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++++++..+-||.-..+|||.
T Consensus 378 ----------------------------------~~~~g~~~~c~~gG~g~a~~~e~ 400 (401)
T PRK09050 378 ----------------------------------GGRYALCTMCIGVGQGIALAIER 400 (401)
T ss_pred ----------------------------------CCCeEEEEEcccccceeEEEEEe
Confidence 23568888889999999999985
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=208.26 Aligned_cols=265 Identities=18% Similarity=0.212 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|||+++++++ .|++|+..... .+ ..++..++..+|+. -|++
T Consensus 27 ~eLa~~A~~~aL~~agl~~~dID----~vi~g~~~~~~-----------------~~---~~~~~~~~~~~Gl~~~~p~~ 82 (393)
T PRK08235 27 TELGGIAIKEALERANVSAEDVE----EVIMGTVLQGG-----------------QG---QIPSRQAARAAGIPWEVQTE 82 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccCC-----------------CC---CCHHHHHHHHcCCCCCccee
Confidence 46889999999999999999998 68888753210 00 12344578889984 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH-------------HHH---------------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI-------------AYY--------------------- 222 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~-------------~~~--------------------- 222 (831)
+|+++|+|++.||+.|++.|++|.+|++||+|+|.+....... .+.
T Consensus 83 ~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (393)
T PRK08235 83 TVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCAFSGVHMGVYGG 162 (393)
T ss_pred ehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccccccccCCchhhhhhcccccccccCCCCHHHHHH
Confidence 9999999999999999999999999999999999765422100 000
Q ss_pred ----HcC------------------------C-------------------CCCCCCCcc-------------ccC----
Q psy11395 223 ----KAG------------------------M-------------------LSRDGICKT-------------FDK---- 238 (831)
Q Consensus 223 ----~~g------------------------~-------------------ls~~g~~~~-------------Fd~---- 238 (831)
+.| . +.++...|+ |+.
T Consensus 163 ~~~~~ygitre~~d~~avksh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~g~l 242 (393)
T PRK08235 163 EVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVTIPQRKGDPIVVAKDEAPRKDTTIEKLAKLKPVFDKTGTI 242 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeeEecCCCCCceEeCCCCCCCCCCCHHHHhcCCCcccCCCcE
Confidence 000 0 001111110 110
Q ss_pred -CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 239 -NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 239 -~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
..|-..++||++++||++.+.|++.+.+++++|+|++...+.... . + .....++++||+++||+++|||++|.|
T Consensus 243 t~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~~i~g~~~~~~~~~~-~--~--~~~~~a~~~al~~agl~~~did~~e~~ 317 (393)
T PRK08235 243 TAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKD-F--P--RTPGYAINALLEKTGKTVEDIDLFEIN 317 (393)
T ss_pred eccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccChhh-h--c--chHHHHHHHHHHHhCCCHHHCCeehhc
Confidence 012223599999999999999999999999999998765432211 1 1 234579999999999999999999988
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
...+. .|.. ..+.|+-. ..++++.+.+..+||+.||+|+..++.++.+|+.+
T Consensus 318 d~f~~----~~l~-~~e~lg~~----------~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~~~------------- 369 (393)
T PRK08235 318 EAFAA----VALA-STEIAGID----------PEKVNVNGGAVALGHPIGASGARIIVTLIHELKRR------------- 369 (393)
T ss_pred chhHH----HHHH-HHHHhCCC----------cccCCcCCchHHhCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 44431 1222 22334310 13567778888889999999999999999999762
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++.+++.+..||.-..+|||.
T Consensus 370 -------------------------~~~~g~~~~c~~gG~g~a~~~e~ 392 (393)
T PRK08235 370 -------------------------GGGIGIAAICSGGGQGDAVLIEV 392 (393)
T ss_pred -------------------------CCCeEEEEEcccccceEEEEEEe
Confidence 12457777778889999999985
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=203.94 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIED-AGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALed-AG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|+.++..+||++ +|+++++++ .||+|...... .....++..++...|+. -|+
T Consensus 26 ~~L~~~a~~~al~~~agl~~~~Id----~v~~G~~~~~~-------------------~~g~~~ar~~~~~~g~~~~~p~ 82 (385)
T TIGR02445 26 EDLSAHLMSKLLARNPKVDPAEVE----DIYWGCVQQTL-------------------EQGFNIARNAALLAQIPHTSAA 82 (385)
T ss_pred HHHHHHHHHHHHHhccCCCHHHcC----EEEEecccccc-------------------cccchHHHHHHHHCCCCCCcch
Confidence 57889999999995 699999998 68888642111 00012555666677764 488
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------------------hHH------HHHc------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------------------TIA------YYKA------ 224 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------------------~~~------~~~~------ 224 (831)
++|+++|+||+.|++.|++.|++|++|++||||+|.+..... .+. ..+.
T Consensus 83 ~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitre~ 162 (385)
T TIGR02445 83 VTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGKMHGISREQ 162 (385)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999998653211 000 0000
Q ss_pred ------------------CCC-------------------CCCCCCcc-------------ccC------CCCcceecCc
Q psy11395 225 ------------------GML-------------------SRDGICKT-------------FDK------NADGYVRGEG 248 (831)
Q Consensus 225 ------------------g~l-------------------s~~g~~~~-------------Fd~------~a~G~v~gEG 248 (831)
|.+ .++...|+ |+. ..|-..++||
T Consensus 163 ~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~~~~~~sDG 242 (385)
T TIGR02445 163 QDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVTAGTSSALSDG 242 (385)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCceecccCCCcCCc
Confidence 011 12211111 221 1222347999
Q ss_pred eEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHH
Q psy11395 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIE 328 (831)
Q Consensus 249 aaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E 328 (831)
++++||++++.|++.+++++++|+|++.+.... ..+ ..+...+++++|+++||+|+||||+|+|...+. .|
T Consensus 243 AaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~~--~~~---~~~~~~a~~~al~~AGi~p~DId~~Ei~daFa~----~~ 313 (385)
T TIGR02445 243 ASAMLVMSEQRANELGLKPRARIRSMAVAGCDP--SIM---GYGPVPATQKALKRAGLSISDIDVFELNEAFAA----QA 313 (385)
T ss_pred eEEEEEecHHHHHHCCCCeeEEEEEEEEcCCCC--ccc---chhHHHHHHHHHHHcCCCHHHcCEEEEccccHH----HH
Confidence 999999999999999999999999999874211 111 124567899999999999999999999977763 34
Q ss_pred HHHHHHH-hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCce
Q psy11395 329 IQGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLY 407 (831)
Q Consensus 329 ~~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~ 407 (831)
+..+... |.+.. ..++.+..-.-.+||+.||+|+..++.++..|++
T Consensus 314 l~~~e~lg~~~~g---------~~~vN~~GG~la~GhP~GATG~r~v~~l~~~l~~------------------------ 360 (385)
T TIGR02445 314 LPCLKDLGLLDKM---------DEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ------------------------ 360 (385)
T ss_pred HHHHHHcCCCCCC---------CCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh------------------------
Confidence 4444332 11110 0123333333335999999999888888855533
Q ss_pred eecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 408 IIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 408 ~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+.+++++++.|-||.-..+|||.
T Consensus 361 --------------~~~~~Gl~~~~~g~g~g~a~~~e~ 384 (385)
T TIGR02445 361 --------------KDATFGLATMCIGLGQGIATVFER 384 (385)
T ss_pred --------------cCCCeEEEEEecccChhheEEEEe
Confidence 023578999999999999999985
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=203.43 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+|||+++++++. +++|...++.. ....+...+|++| |.+
T Consensus 22 ~~~La~~A~~~Al~dAGl~~~dID~----~~~g~~~~~~~-----------------------~~~~~~~~lGl~~~~~~ 74 (391)
T PRK08256 22 YPDMAAEAGRAALADAGIDYDAVQQ----AYVGYVYGDST-----------------------SGQRALYEVGMTGIPIV 74 (391)
T ss_pred HHHHHHHHHHHHHHHcCCChHHCCe----eEEEEEeCCcc-----------------------hhHHHHHHcCCCCCCCc
Confidence 4689999999999999999988885 44543321110 0012566789998 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cch---------hHHHH-------H-cCCCCCC--------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSN---------TIAYY-------K-AGMLSRD-------- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~---------~~~~~-------~-~g~ls~~-------- 230 (831)
+|+++|+|++.||..|+++|++|++|++||+|++.+.. +.. +..+. . .+...+.
T Consensus 75 ~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 154 (391)
T PRK08256 75 NVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPALRMFGGAGR 154 (391)
T ss_pred ccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999998642 110 00000 0 0010000
Q ss_pred -----------------------CCCccc-------c--------------CCCCcceecCceEEEEecchhhhhhCCCc
Q psy11395 231 -----------------------GICKTF-------D--------------KNADGYVRGEGAVMLMLKPLSVALNDHDN 266 (831)
Q Consensus 231 -----------------------g~~~~F-------d--------------~~a~G~v~gEGaaavvL~~~~~A~~~g~~ 266 (831)
..-.|. + ...|-..++||++++||.+.+.|++.+.+
T Consensus 155 ~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~~~a~~~~~~ 234 (391)
T PRK08256 155 EHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSEEFARKHGLD 234 (391)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecHHHHHhcCCC
Confidence 000110 0 01122236999999999999999888767
Q ss_pred eEEEEeeeeeccCCCCCCCC-C---C-CHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhh
Q psy11395 267 IYAIIKGSAITHNGQSNGLT-A---P-NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSII 340 (831)
Q Consensus 267 i~a~I~g~~~~~dg~~~~~~-~---p-~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~ 340 (831)
++++|+|.+..++....... . . ...+...+++++|+++|++++|||++|+|...|.. |...+... |.+..
T Consensus 235 ~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ag~~~~DiD~~ei~d~f~~~----~l~~le~lg~~~~G 310 (391)
T PRK08256 235 RAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQAGIGPEDIDVVELHDCFSAN----ELLTYEALGLCPEG 310 (391)
T ss_pred CCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEeeccCCcHH----HHHHHHHcCCCCCC
Confidence 88999998876553221100 0 1 12345679999999999999999999999998843 44444433 22211
Q ss_pred hhhc----ccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeeccccc
Q psy11395 341 TYKK----NIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQD 414 (831)
Q Consensus 341 ~~~~----~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~ 414 (831)
.... ........++|...-+. .||+.||+|+..++.++++|+.+.-..+
T Consensus 311 e~~~~~~~G~~~~~G~~pvN~~GG~ls~Ghp~gasG~~~~~e~~~QL~g~ag~~Q------------------------- 365 (391)
T PRK08256 311 EAEKFIDDGDNTYGGRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGTAGARQ------------------------- 365 (391)
T ss_pred chHHHHHCCCccCCCCeeeCCCCccccCCCCccHHHHHHHHHHHHHhcCCcCCCc-------------------------
Confidence 0000 00011123444333333 3999999999999999999987521111
Q ss_pred CccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 415 WVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 415 w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
..+.+++++++.|.|.++...||+
T Consensus 366 ------v~~~~~~l~~~~G~~~~~~~~v~~ 389 (391)
T PRK08256 366 ------VEGARLALQHNLGLGGACVVTLYQ 389 (391)
T ss_pred ------CCccceEEEeccccceeEEEEEEe
Confidence 123568999999965555555554
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-20 Score=205.79 Aligned_cols=242 Identities=16% Similarity=0.199 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.++..+||+|+|+++++++ .||+|+...+-. . ...++..++...|+. -|.+
T Consensus 27 ~eL~~~a~~~al~~agi~~~~Id----~v~~G~~~~~~~----------------~---~~~~ar~~~~~~Glp~~~p~~ 83 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGDDIE----DVILGCTNQAGE----------------D---SRNVARNALLLAGLPVTVPGQ 83 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccccc----------------c---cccHHHHHHHhcCCCCCCcee
Confidence 56889999999999999999988 688886432110 0 012344577888885 5999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh------------HHHHH--------cCC---CCC----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT------------IAYYK--------AGM---LSR---- 229 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~------------~~~~~--------~g~---ls~---- 229 (831)
+|+++|+||+.|++.|++.|++|++|++||||+|.+...... ..+.. ..+ ...
T Consensus 84 tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~mg 163 (401)
T PRK08131 84 TVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKIVAQYGNDSMP 163 (401)
T ss_pred eeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCcccccccccccccCcchhhhhhcccccCcccccccccCCHH
Confidence 999999999999999999999999999999999987532110 00000 000 000
Q ss_pred ---------------------------------CCCC----ccccCC---------------------------------
Q psy11395 230 ---------------------------------DGIC----KTFDKN--------------------------------- 239 (831)
Q Consensus 230 ---------------------------------~g~~----~~Fd~~--------------------------------- 239 (831)
.+.. .|.+.+
T Consensus 164 ~~ae~~~~~ygitre~~d~vA~~S~~~~~~a~~~~~~~~~i~pi~v~~~~~~~~~~v~~De~~r~~~~~e~L~~l~p~f~ 243 (401)
T PRK08131 164 ETGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEVPQGRKLPPKLVAEDEHPRPSSTVEALTKLKPLFE 243 (401)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCCceeeEEeccccCCCceEEecCCCCCCCCCHHHHhcCCCCCC
Confidence 0100 011100
Q ss_pred ------CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcce
Q psy11395 240 ------ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGY 313 (831)
Q Consensus 240 ------a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ 313 (831)
.|-..++||++++||.+++.|++.+.+++++|+|++...+... ....+...+++++|+++||+++|||+
T Consensus 244 ~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~~~-----~~~~~~~~a~~~a~~~agl~~~did~ 318 (401)
T PRK08131 244 GGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVEPR-----IMGIGPVEAIKKALARAGLTLDDMDI 318 (401)
T ss_pred CCCccCCcCCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEeccCCc-----cccchHHHHHHHHHHHcCCCHHHCCe
Confidence 0333478999999999999999999999999999988755321 11235678999999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhc
Q psy11395 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 314 ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~ 383 (831)
+|.|...|.. |+..+ +.++-. ....+|+...+. +||+.||+|+..++.++.+|+.
T Consensus 319 ~ei~d~Fa~~----~l~~~-e~lg~~----------~~~~~vN~~GG~la~GhP~gAtG~~~~~el~~qL~~ 375 (401)
T PRK08131 319 IEINEAFASQ----VLGCL-KGLGVD----------FDDPRVNPNGGAIAVGHPLGASGARLALTAARELQR 375 (401)
T ss_pred ehhccHHHHH----HHHHH-HHcCCC----------CCCCCccCCccHHhcCCchhhhHHHHHHHHHHHHHh
Confidence 9999555422 22211 222210 012345444443 5999999999999999999986
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=205.14 Aligned_cols=257 Identities=16% Similarity=0.161 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|+.+++++||+|||+++++++ ++++|+...++. ...++..++..+|+. .|.+
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~~Id----~vi~g~~~~~~~--------------------~~~~a~~va~~lGl~~~~~~ 71 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPADID----AVVVGNAAGGRF--------------------QSFPGALIAEYLGLLGKPAT 71 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEeccccccc--------------------ccchHHHHHHHcCCCCccee
Confidence 467899999999999999988877 688876533221 123567899999994 5999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh---H------HHH---HcCCCCCC--------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT---I------AYY---KAGMLSRD-------------- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~---~------~~~---~~g~ls~~-------------- 230 (831)
+|+.+|+|++.+|+.|++.|++|++|++||+|+|.+...... . .+. ..+.+.+.
T Consensus 72 ~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~ 151 (375)
T cd00829 72 RVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRY 151 (375)
T ss_pred eEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976542110 0 000 01111100
Q ss_pred C---------------------------------------CCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEE
Q psy11395 231 G---------------------------------------ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAII 271 (831)
Q Consensus 231 g---------------------------------------~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I 271 (831)
| .+.|+. ..|...++||++++||.+.+.|++. .++++.|
T Consensus 152 g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~-~~~~~~~~DGaaa~vl~s~~~a~~~-~~~~~~i 229 (375)
T cd00829 152 GTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLR-LLDCCPVSDGAAAVVLASEERAREL-TDRPVWI 229 (375)
T ss_pred CCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCc-hhhcCCCCCceeEEEEecHHHHhhc-CCCCeEE
Confidence 0 001111 1344468999999999999999887 7789999
Q ss_pred eeeeeccCCCCCCCCC--CCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhh----c
Q psy11395 272 KGSAITHNGQSNGLTA--PNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYK----K 344 (831)
Q Consensus 272 ~g~~~~~dg~~~~~~~--p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~----~ 344 (831)
+|++..++........ ....+...+++++|++|||+++|||++|.|.++|.. +...+... |+...... .
T Consensus 230 ~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~d~F~~~----~l~~~e~lGl~~~g~~~~~~~~ 305 (375)
T cd00829 230 LGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIA----ELLALEDLGFCEKGEGGKLVRE 305 (375)
T ss_pred EEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH----HHHHHHHcCCCCCCchHHHHHC
Confidence 9999987765432111 245677899999999999999999999999999853 44443333 22211100 0
Q ss_pred ccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 345 NIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 345 ~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
........++|....+. .||+.||+|+..++.++.+|+..
T Consensus 306 g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qlrg~ 347 (375)
T cd00829 306 GDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGE 347 (375)
T ss_pred CCccCCCCccccCCCchhcCCCCccHHHHHHHHHHHHHhcCC
Confidence 00001122344444444 49999999999999999999875
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=202.78 Aligned_cols=265 Identities=16% Similarity=0.179 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+.+++.+||+|||+++++++ +|++|.... . .. ....++..+....|+ ..|.+
T Consensus 27 ~~L~~~a~~~al~dagl~~~~ID----~vv~g~~~~-~------------~~------~~~~~~~~~~l~~gl~~~~p~~ 83 (382)
T PRK07801 27 ADLGAHVLKGLVDRTGIDPAAVD----DVIFGCVDT-I------------GP------QAGNIARTSWLAAGLPEEVPGV 83 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEEeecc-C------------Cc------ccccHHHHHHHHcCCCCCCcee
Confidence 45889999999999999999998 688874310 0 00 000122223333444 46999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cc--h--hH-------------HH-HHcCCCCC--------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PS--N--TI-------------AY-YKAGMLSR-------- 229 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~--~--~~-------------~~-~~~g~ls~-------- 229 (831)
+|+++|+||+.|++.|+++|++|+||++||+|++.+.. |. . .. .+ ...+....
T Consensus 84 ~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~ 163 (382)
T PRK07801 84 TVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPISSAMTAGEQLGFTSPFAESKGWLHRYGDQEVSQFRGAEL 163 (382)
T ss_pred eecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcCCcccccccccccccCCcccccCcchhhhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999996533 21 0 00 00 00111000
Q ss_pred ----C------------------------CCC--c--ccc----------------------------CCCCcceecCce
Q psy11395 230 ----D------------------------GIC--K--TFD----------------------------KNADGYVRGEGA 249 (831)
Q Consensus 230 ----~------------------------g~~--~--~Fd----------------------------~~a~G~v~gEGa 249 (831)
. +.. . |++ ...|-..++||+
T Consensus 164 ~~~~yG~tre~~a~vav~~~~~a~~n~~ag~~~~~~~p~~~~~~d~~~~~~t~e~~~~~~~i~~~~pl~~~d~~~~~DGa 243 (382)
T PRK07801 164 IAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIVPVGGVTVDEGPRETSLEKMAGLKPLVEGGRLTAAVASQISDGA 243 (382)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCccccCCcCcCCHHHHhcCCCCCCCCCcccccCCCCCCce
Confidence 0 000 0 110 011223368999
Q ss_pred EEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHH
Q psy11395 250 VMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEI 329 (831)
Q Consensus 250 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~ 329 (831)
+++||.+.+.|++.+.+++++|.|++...+......+ +...++++||++|||+++|||++|.|...+. .|.
T Consensus 244 aa~il~s~e~a~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~a~~~a~~~agi~~~did~~e~~d~Fa~----~~~ 314 (382)
T PRK07801 244 SAVLLASERAVKRHGLTPRARIHHLSVRGDDPVFMLT-----APIPATRYALEKTGLSIDDIDVVEINEAFAP----VVL 314 (382)
T ss_pred EEEEEecHHHHHHCCCCccEEEEEEEEecCChHhhcc-----ChHHHHHHHHHHcCCCHHHcCEeeecccchH----HHH
Confidence 9999999999999998889999998765432111112 2246899999999999999999999988773 344
Q ss_pred HHHHHH-hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCcee
Q psy11395 330 QGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408 (831)
Q Consensus 330 ~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~ 408 (831)
..+... |.. .++...+-...+||+.||+|+..++.++.+|+.+
T Consensus 315 ~~~e~lG~~~------------~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~~------------------------ 358 (382)
T PRK07801 315 AWLKETGADP------------AKVNPNGGAIALGHPLGATGAKLMTTLLHELERT------------------------ 358 (382)
T ss_pred HHHHHhCCCc------------hhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHhc------------------------
Confidence 444432 211 2455555555669999999999999999999871
Q ss_pred ecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 409 ~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.|++++++.|.||+.+.+||+.
T Consensus 359 --------------~~~~gl~~~~gggg~~~~~vl~~ 381 (382)
T PRK07801 359 --------------GGRYGLQTMCEGGGTANVTIIER 381 (382)
T ss_pred --------------CCCEEEEEEcccccceeEEEEEe
Confidence 12467888888889999888874
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=200.94 Aligned_cols=266 Identities=13% Similarity=0.133 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.++++++|+|+|+++++++ .|++|+..... .....++..++...|+. -|++
T Consensus 27 ~eL~~~a~~~aL~~agi~~~~Id----~v~~G~~~~~~-------------------~q~~~~ar~~~l~~Gl~~~~p~~ 83 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPGDVE----QVIGGCVTQAG-------------------EQSNNITRTAWLHAGLPYHVGAT 83 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccccc-------------------cccchHHHHHHHhCCCCCCCceE
Confidence 56889999999999999999988 58888642110 00112455666778885 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-hH---H----------H-------------HHcCC---
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-TI---A----------Y-------------YKAGM--- 226 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-~~---~----------~-------------~~~g~--- 226 (831)
+|+++|+||+.|++.|++.|++|++|++||||+|.|..... .. . + .+.|+
T Consensus 84 tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~~~~ygisre 163 (387)
T PRK07850 84 TIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERIAKRRGITRE 163 (387)
T ss_pred EEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCcccccccccccCccccccccCcchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999998754210 00 0 0 00000
Q ss_pred ---------------------CCC------------C----CC---------------------CccccC---C-CCcce
Q psy11395 227 ---------------------LSR------------D----GI---------------------CKTFDK---N-ADGYV 244 (831)
Q Consensus 227 ---------------------ls~------------~----g~---------------------~~~Fd~---~-a~G~v 244 (831)
+.. . +. ...|.. . .|-..
T Consensus 164 ~~d~~a~~sh~~a~~A~~~g~f~~ei~pv~~~~~~~~~np~~~~~~~~~D~~~r~~t~e~l~~l~p~~~~~~~t~~~~~~ 243 (387)
T PRK07850 164 DVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLRDTTMEGLAGLKPVLEGGIHTAGTSSQ 243 (387)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeeEeecccccccccCCCceEeecCCCcccCCHHHhccCCCCCCCCCccchhcCC
Confidence 000 0 00 012210 0 12234
Q ss_pred ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCC
Q psy11395 245 RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLG 324 (831)
Q Consensus 245 ~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~g 324 (831)
++||++++||.+.+.|++.|.++.+.|+|++....... . ...+...+++++|+++||+++|||++|.|...+.
T Consensus 244 ~sDGAaa~vl~see~A~~l~~~p~~~i~g~~~~~~~~~--~---~~~~~~~a~~~al~~agl~~~did~~ei~d~F~~-- 316 (387)
T PRK07850 244 ISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPY--Y---HLDGPVQATAKVLEKAGMKIGDIDLVEINEAFAS-- 316 (387)
T ss_pred cCCceEEEEEecHHHHHHcCCCCcEEEEEEEEeccCch--h---hcchHHHHHHHHHHHcCCCHHHcCeeeecccchH--
Confidence 68999999999999999999899999999986432111 1 1244578999999999999999999999977763
Q ss_pred CHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCC
Q psy11395 325 DPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDS 404 (831)
Q Consensus 325 D~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~ 404 (831)
.|+..+ +.|+-. . .++.+..-.-.+||+.||+|+..++.++.+|+.+
T Consensus 317 --~~l~~~-e~lg~~---------~-~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~-------------------- 363 (387)
T PRK07850 317 --VVLSWA-QVHEPD---------M-DKVNVNGGAIALGHPVGSTGARLITTALHELERT-------------------- 363 (387)
T ss_pred --HHHHHH-HHcCCC---------C-CCcCCCCchhhcCCCcchhHHHHHHHHHHHHHhc--------------------
Confidence 233333 233310 0 2344444444569999999999999999999752
Q ss_pred CceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 405 HLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 405 ~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++.+++..+-||....+|||.
T Consensus 364 ------------------~~~~g~~~~c~~gg~g~a~~~e~ 386 (387)
T PRK07850 364 ------------------DKSTALITMCAGGALSTGTIIER 386 (387)
T ss_pred ------------------CCCeEEEEEccccCceeEEEEEe
Confidence 23568888888899999999985
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=203.00 Aligned_cols=276 Identities=16% Similarity=0.171 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|+..... . ...++..++...|+. -|++
T Consensus 30 ~eL~~~a~~~al~~agl~~~~ID----~vi~G~~~~~~-----------------~---~~~~ar~~a~~aGl~~~~P~~ 85 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPELIE----QLVFGQVVQMP-----------------E---APNIAREIVLGTGMNVHTDAY 85 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEeccCCCC-----------------C---ccHHHHHHHHHCCCCCCCcce
Confidence 56889999999999999999988 68888642100 0 123566788999996 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH-------------------H---HHH----------c
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI-------------------A---YYK----------A 224 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~-------------------~---~~~----------~ 224 (831)
+|+++|+||+.|++.|++.|++|++|++||||+|.+....... . +.. .
T Consensus 86 tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (428)
T PRK08963 86 SVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLRDLLPVPP 165 (428)
T ss_pred eehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCCCccccccccccchhccccccccCcccccccccchhhccccCc
Confidence 9999999999999999999999999999999999875422100 0 000 0
Q ss_pred CC---------------------CCC-------------------CCC---------Ccccc------------C-----
Q psy11395 225 GM---------------------LSR-------------------DGI---------CKTFD------------K----- 238 (831)
Q Consensus 225 g~---------------------ls~-------------------~g~---------~~~Fd------------~----- 238 (831)
++ +++ +|. ..|+. .
T Consensus 166 ~~~~~~~~~~m~~~A~~~~~~ygisre~~~~~avksh~~a~~~~~~g~~~~ei~p~~~~p~a~~~~~D~~~r~~~t~e~~ 245 (428)
T PRK08963 166 AVAEYSTGLRMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDEVMTAHVPPYKQPLEEDNNIRGDSTLEDY 245 (428)
T ss_pred ccccccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeEEecCCceeeCCCCCCCCCCCHHHH
Confidence 00 000 000 00111 0
Q ss_pred -------C-CCcc-------eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy11395 239 -------N-ADGY-------VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303 (831)
Q Consensus 239 -------~-a~G~-------v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~ 303 (831)
+ .+|. .++||++++||.+.+.|++.+.++.+.|+|++........ . ...+...+++++|++
T Consensus 246 ~~~~~v~~p~~g~lt~~~~~~~~DGAaA~vl~see~A~~l~~~p~~~i~g~~~~~~~~~~---~-~~~~~~~a~~~al~~ 321 (428)
T PRK08963 246 AKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFAAIDVWQ---D-MLLGPAYATPLALER 321 (428)
T ss_pred hcCCccccCCCCceehhhcCCCCCceEEEEEecHHHHHHcCCCccEEEEEEecccCCchh---h-hhhHHHHHHHHHHHH
Confidence 0 1122 2599999999999999999999999999998875411100 0 123345789999999
Q ss_pred cCCCCCCcceEEecCCCCCCCCHHHHHHHHHH----hhhhhhhhccc-cc-ccccccc-cccCCCCcccchhhhHHHHHH
Q psy11395 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA----FHSIITYKKNI-KN-FYEKCGL-GSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 304 Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~----f~~~~~~~~~~-~~-~~~~~~v-gs~K~~iGH~~~AsG~~~lik 376 (831)
+||+++|||++|.|...+. .|+..+... |.......... +. ...++.+ |..++ .||+.||+|+..++.
T Consensus 322 AGl~~~DiD~~Ei~d~Fa~----~~l~~~e~l~~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la-~GhP~gasG~~~~~e 396 (428)
T PRK08963 322 AGLTLADLTLIDMHEAFAA----QTLANLQMFASERFAREKLGRSQAIGEVDMSKFNVLGGSIA-YGHPFAATGARMITQ 396 (428)
T ss_pred cCCCHHHCCEEEEccccHH----HHHHHHHHhcCchhhhhcccccccCCCCCCCccCCCCCHHh-cCCCccccHHHHHHH
Confidence 9999999999999998883 344333322 11100000000 00 0012222 33332 499999999999999
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++.+|+.+ ..++++++..+-||....+|||.
T Consensus 397 ~~~qLrg~--------------------------------------~g~~gl~~~c~ggG~g~a~~ie~ 427 (428)
T PRK08963 397 TLHELRRR--------------------------------------GGGLGLTTACAAGGLGAAMVLEV 427 (428)
T ss_pred HHHHHhhc--------------------------------------CCCEEEEEEccccChhhEEEEEe
Confidence 99999762 12468999999999999999984
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=199.84 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++.+||+|||+++++++ +|++|.....+ .+ .+.....++..+|+.+ |+++
T Consensus 38 ~eL~~eA~~~Al~dagl~~~dID----~vv~~~~~~~~-----------------~g--~~~~~~~~~~~lGl~~~~~~~ 94 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLADID----GSVASYFSDHF-----------------QR--QLLAGIMVQDYLGLVPKPSKR 94 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC----EEEEecccccc-----------------cc--cchhhHHHHHhcCCCCCceEE
Confidence 47899999999999999999998 56665422111 01 1112234678999976 9999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH--HHH---------H-cCCCCC----------------
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI--AYY---------K-AGMLSR---------------- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~--~~~---------~-~g~ls~---------------- 229 (831)
|+++|+|++.||+.|++.|++|+||++||+|++.+....... .+. . .+...+
T Consensus 95 v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a~ry~~~yG~ 174 (430)
T PRK06365 95 IEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHVNTWKGNEFIALASDTNFDYPLGGFYTGYYAMMAVRHMYEFGT 174 (430)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccccchhhhhhhcccccccccccccCccHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999765422100 000 0 000000
Q ss_pred --C------------CCCccccCC---------------------CCcceecCceEEEEecchhhhhhCCCceEEEEeee
Q psy11395 230 --D------------GICKTFDKN---------------------ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGS 274 (831)
Q Consensus 230 --~------------g~~~~Fd~~---------------------a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~ 274 (831)
+ ....||... .|-..++||++++||.+.+.|++.++++. .|+++
T Consensus 175 t~e~la~vav~~~~~A~~NP~A~~~~~~t~e~v~~s~~i~~Plt~~d~~~~sDGAaAvvl~See~A~~l~~~pv-~i~g~ 253 (430)
T PRK06365 175 TVEQLAKVSVKNHGNAIHNPFAQSPMKITVEDVRKSPMVSYPLTRLDVCAMSDGAACAILASEDKAFEITDKPV-LIKAI 253 (430)
T ss_pred CHHHHHHHHHHHHHHHhhCcHhhcCCCCCHHHHhcCCccccCcchhhcCCcCCceEEEEEecHHHHHhcCCCCe-EEEEE
Confidence 0 011122111 12223689999999999999998776653 35555
Q ss_pred eeccCCCCCCC----C-------------------CCCHHHHHHHHHHHHHHcCCC--CCCcceEEecCCCCCCCCHHHH
Q psy11395 275 AITHNGQSNGL----T-------------------APNPIQQSYLLQKAWNESNID--VRSLGYIECHGTGTKLGDPIEI 329 (831)
Q Consensus 275 ~~~~dg~~~~~----~-------------------~p~~~~~~~~i~~al~~Agl~--~~dId~ie~HgtGT~~gD~~E~ 329 (831)
+..+++..... . .........+++++|++|||+ ++|||++|.|...|.. |+
T Consensus 254 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D~Fa~~----~l 329 (430)
T PRK06365 254 GTGSDTLRLADRPFGEVPLLPNESPDDYKDLRYPGVHSFRAGRMAAKEAYEMAGITDPLNDLDLIELHDAYTSS----EI 329 (430)
T ss_pred EEeccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCCCHHHCCEEEeecCCcHH----HH
Confidence 55444321100 0 012234568999999999997 7999999999988843 44
Q ss_pred HHHHHH-hhhhhhhhc----ccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 330 QGLKNA-FHSIITYKK----NIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 330 ~al~~~-f~~~~~~~~----~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
..+... |+....... .......+++|+..-+. .||+.||+|+..++.++++|+.+
T Consensus 330 ~~lE~lGl~~~Ge~~~~~~~G~~~~~G~~piNt~GG~la~Ghp~GatG~~~~~e~~~QLrG~ 391 (430)
T PRK06365 330 QTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGR 391 (430)
T ss_pred HHHHHcCCCCCCchHHHHHCCCcCCCCCccccCCCchhcCCCcccHHHHHHHHHHHHHHhcc
Confidence 443332 221110000 00001123444333333 39999999999999999999985
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=199.56 Aligned_cols=250 Identities=13% Similarity=0.077 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++.+||+|||+++++++ ++++++.... .....++..+|+++ |.+.
T Consensus 29 ~eL~~eA~~~Al~dAgl~~~dID----~iv~~~~~~~------------------------~~~~~la~~lGl~~~~~~~ 80 (384)
T PRK06158 29 MELLAQAAHRALADAGLTMADVD----GLFTASPDDA------------------------LWGLSVAEYLGIRPRFVDG 80 (384)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEecCCCC------------------------CcHHHHHHHcCCCCeeecc
Confidence 46889999999999999999988 6777753100 01135888899976 7888
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEe-cccccccc---------------------chhHH------HHHcCCC--
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVG-GINLILHP---------------------SNTIA------YYKAGML-- 227 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvg-Gv~~~~~p---------------------~~~~~------~~~~g~l-- 227 (831)
+.++|+|++.+|+.|++.|++|.+|++||+ |.+.+... ...+. +.+.|..
T Consensus 81 ~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym~~yG~t~e 160 (384)
T PRK06158 81 TMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHMHQYGTTRE 160 (384)
T ss_pred ccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHHHHHCcCHH
Confidence 999999999999999999999999999975 66543210 00000 0011100
Q ss_pred ---------------CCC----------------CCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeee
Q psy11395 228 ---------------SRD----------------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276 (831)
Q Consensus 228 ---------------s~~----------------g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~ 276 (831)
.|. -.+.|+.. .|...++||++++||++++.|++.++++ +.|+|++.
T Consensus 161 ~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~~-v~i~g~~~ 238 (384)
T PRK06158 161 QLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRPP-VYVLGAAA 238 (384)
T ss_pred HHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCCc-EEEEEEEE
Confidence 000 01222221 4556789999999999999998876653 55777776
Q ss_pred ccCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc----cccccc
Q psy11395 277 THNGQSNG-LTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK----NIKNFY 350 (831)
Q Consensus 277 ~~dg~~~~-~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~----~~~~~~ 350 (831)
.++..... ...........++++||++|||+|+|||++|.|...|.. |...+... |++...... ......
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~ElyD~Fs~~----~l~~~E~lG~~~~Ge~~~~~~~G~~~~~ 314 (384)
T PRK06158 239 ATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELYDAFTIN----TILFLEDLGFCAKGEGGAFVEGGRIAPG 314 (384)
T ss_pred ecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEecCCchHH----HHHHHHHcCCCCCCcHHHHHHCCCCccC
Confidence 65533211 111223456789999999999999999999999998843 44444332 322111100 000111
Q ss_pred cccccc---ccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 351 EKCGLG---SVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 351 ~~~~vg---s~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
.++||+ ..++. ||+ ||+|+.+++.++++|+..
T Consensus 315 G~~PvN~sGG~ls~-Ghp-gatG~~~~~E~~~QLrg~ 349 (384)
T PRK06158 315 GRLPVNTNGGGLSC-VHP-GMYGLFLLIEAVRQLRGE 349 (384)
T ss_pred CCccccCCChhhcC-CCC-chhhHHHHHHHHHHHcCC
Confidence 234443 44433 999 999999999999999874
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=197.24 Aligned_cols=265 Identities=17% Similarity=0.174 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+.+++.+||+|+|+++++++ .|++|..... +.....++..+...-|| .-|.+
T Consensus 27 ~~L~~~a~~~al~~a~l~~~~Id----~vi~G~~~~~-------------------~~~~~~~ar~~~l~~gl~~~vP~~ 83 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPALIE----DVIMGCVSQV-------------------GEQATNVARNAVLASKLPESVPGT 83 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccc-------------------ccccccHHHHHHHHcCCCCCCceE
Confidence 67889999999999999999998 5888864310 00001122222333344 55999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-hH---------------HHHH-cC--C-----------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-TI---------------AYYK-AG--M----------- 226 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-~~---------------~~~~-~g--~----------- 226 (831)
+|+++|+||+.|++.|++.|++|++|++||||+|.|..... .. .+.. .. .
T Consensus 84 tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aae~~a 163 (390)
T PRK06504 84 SIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQFTGAEMMA 163 (390)
T ss_pred EEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCCccccccccccccccccccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998753210 00 0000 00 0
Q ss_pred ----CCC-------------------CC-------------------------------------CCccccC-----CCC
Q psy11395 227 ----LSR-------------------DG-------------------------------------ICKTFDK-----NAD 241 (831)
Q Consensus 227 ----ls~-------------------~g-------------------------------------~~~~Fd~-----~a~ 241 (831)
+++ .+ ..+|... -.|
T Consensus 164 ~~ygisre~~d~~A~ksh~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~~De~~r~~~t~e~l~~~~~~~~~g~lt~~n 243 (390)
T PRK06504 164 KKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHTVDEGIRFDATLEGIAGVKLIAEGGRLTAAT 243 (390)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHhHHcCCCccccccccccCCCCCceEEccCCCCCCCCCHHHHhcCCCCCCCCCCcCcc
Confidence 000 00 0011100 012
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
-..++||++++||.+.+.|++.+.++.+.|++++...+... . ...+...+++++|+++||+++|||++|.|...|
T Consensus 244 ~s~~~DGAaA~vl~s~~~A~~l~~~p~~~i~~~~~~~~~~~---~--~~~~~~~a~~~a~~~agl~~~Did~~Ei~d~Fa 318 (390)
T PRK06504 244 ASQICDGASGVMVVNERGLKALGVKPLARIHHMTVIGGDPV---I--MLEAPLPATERALKKAGMKIDDIDLYEVNEAFA 318 (390)
T ss_pred CCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEeecCch---h--hhccHHHHHHHHHHHcCCCHHHCCEEEecccch
Confidence 22368999999999999999999888888888776433211 1 122445689999999999999999999998887
Q ss_pred CCCCHHHHHHHHHH-hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 322 ~~gD~~E~~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
. .|+..+... |.. .++.+..-.-.+||+.||+|+..+..++.+|++.
T Consensus 319 ~----~~l~~~e~lG~~~------------~pvN~~GG~la~Ghp~gatG~r~~~~l~~~lr~~---------------- 366 (390)
T PRK06504 319 S----VPLAWLKATGADP------------ERLNVNGGAIALGHPLGASGTKLMTTLVHALKQR---------------- 366 (390)
T ss_pred H----HHHHHHHHhCCCC------------CCcCCCCcHHhcCCCcchhHHHHHHHHHHHHHhh----------------
Confidence 4 344443332 221 2344444444469999999999999999999751
Q ss_pred CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 401 ~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.+++++++.|.||..+.+||+.
T Consensus 367 ----------------------~~~~gl~~~~~ggg~g~a~ile~ 389 (390)
T PRK06504 367 ----------------------GKRYGLQTMCEGGGMANVTIVER 389 (390)
T ss_pred ----------------------CCCeEEEEEeecccceeEEEEEe
Confidence 12467888888788888888874
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=202.81 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++++||+|||+++++++ .|++++...+. ......+..++..+|+++ |.++
T Consensus 24 ~~La~~A~~~Al~dAgl~~~dId----~vi~~~~~~~~-------------------~~~~~~a~~va~~lG~~~~~~~~ 80 (399)
T PRK06059 24 VEYGVVAARAALADAGLDWRDVQ----LVVGADTIRNG-------------------YPGFVAGATFAQALGWNGAPVSS 80 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCc-------------------cCCccHHHHHHHHhCCCCCceec
Confidence 56889999999999999988887 56666432110 001123567899999988 8999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc--h--h-----HHHHH---cCCCCC----------------
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS--N--T-----IAYYK---AGMLSR---------------- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~--~--~-----~~~~~---~g~ls~---------------- 229 (831)
|+++|+|++.||.+|+++|++|++|.+||+|+|.+.... . . ..+.. .++..+
T Consensus 81 v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~~~~~yg~ 160 (399)
T PRK06059 81 SYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLARRRMDLYGA 160 (399)
T ss_pred ccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999754310 0 0 00000 111000
Q ss_pred --------------CCCCcc-------cc--------------CCCCcceecCceEEEEecchhhhhhC--CCceEEEEe
Q psy11395 230 --------------DGICKT-------FD--------------KNADGYVRGEGAVMLMLKPLSVALND--HDNIYAIIK 272 (831)
Q Consensus 230 --------------~g~~~~-------Fd--------------~~a~G~v~gEGaaavvL~~~~~A~~~--g~~i~a~I~ 272 (831)
.+.-.| .+ ..-|-..++|||+++||.+.+.|++. +.+..++|+
T Consensus 161 s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~~~~~v~I~ 240 (399)
T PRK06059 161 TVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGSVAGVPSVR 240 (399)
T ss_pred CHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhccccCCceEEE
Confidence 000011 00 01133346899999999999999887 666778899
Q ss_pred eeeeccCCCC------CCCC--------CCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hh
Q psy11395 273 GSAITHNGQS------NGLT--------APNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FH 337 (831)
Q Consensus 273 g~~~~~dg~~------~~~~--------~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~ 337 (831)
|++...+... ..+. .++......+++++|+++||+++|||++|.|...|.. |+..+... |.
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~agl~~~Did~~El~d~f~~~----~l~~~e~lGl~ 316 (399)
T PRK06059 241 AISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEAGIGPEDLSLAEVYDLSTAL----ELDWYEHLGLC 316 (399)
T ss_pred EEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCcEEeecccChHH----HHHHHHHcCCC
Confidence 9887543211 0111 1122224578999999999999999999999988743 44444322 22
Q ss_pred hhhhhh----cccccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeec
Q psy11395 338 SIITYK----KNIKNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410 (831)
Q Consensus 338 ~~~~~~----~~~~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~ 410 (831)
...... ........+++| |..++ .||+.||+|+..++.++++|+...-..+
T Consensus 317 ~~G~~~~~~~~G~~~~~G~~pvN~~GG~la-~Ghp~gatG~~~~~e~~~qLrg~ag~~Q--------------------- 374 (399)
T PRK06059 317 PKGEAEALLRSGATTLGGRIPVNPSGGLAC-FGEAIPAQAIAQVCELTWQLRGQAGGRQ--------------------- 374 (399)
T ss_pred CCCcHHHHHHCCCccCCCCeeecCCCcccc-CCccCCccHHHHHHHHHHHhccCcCCcc---------------------
Confidence 110000 000001122344 33333 3999999999999999999987421111
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.++.+++++.+.|.+|..+.+||++
T Consensus 375 ----------v~~a~~gl~~~~g~~g~~~~~~l~~ 399 (399)
T PRK06059 375 ----------VEGARVGITANQGLFGHGSSVIVAR 399 (399)
T ss_pred ----------CCCccEEEEeccCCcccceEEEecC
Confidence 1235678888888889999999874
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=197.14 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++.+||+|||+++++++ +++++++ .++.. +. ...+..++..+|+++ |++.
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~dID----~iv~~~~-~~~~~----------------~~--~~~~~~va~~LGl~~~~~~~ 81 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWDDID----AVVVGKA-PDFFE----------------GV--MMPELFLADALGATGKPLIR 81 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEecc-ccccc----------------cc--cCchHHHHHhcCCCCCceEE
Confidence 46889999999999999999998 6777763 22210 00 012246889999976 8899
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh--------------------H------HHHHcCCCCC--
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT--------------------I------AYYKAGMLSR-- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~--------------------~------~~~~~g~ls~-- 229 (831)
|+++|+|+..+++.|++.|++|++|.+||.|++.+...... + .+.+.|....
T Consensus 82 v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~~G~~~e~l 161 (386)
T PRK08313 82 VHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRRSGAPEHIG 161 (386)
T ss_pred EeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999865331000 0 0111222110
Q ss_pred ---------CCCCccccC----------------------CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeecc
Q psy11395 230 ---------DGICKTFDK----------------------NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH 278 (831)
Q Consensus 230 ---------~g~~~~Fd~----------------------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~ 278 (831)
.+.-+|+.. .-|-..++||++++||.+.+.|++.+.++.++|+|++..+
T Consensus 162 a~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~I~g~~~~~ 241 (386)
T PRK08313 162 AMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAWIHGTAMRT 241 (386)
T ss_pred HHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeEEEEEEEEe
Confidence 011112111 1223346999999999999999988888888999998876
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHcCCC--CCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc----cccccc
Q psy11395 279 NGQSNG-LTAPNPIQQSYLLQKAWNESNID--VRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK----NIKNFY 350 (831)
Q Consensus 279 dg~~~~-~~~p~~~~~~~~i~~al~~Agl~--~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~----~~~~~~ 350 (831)
+..... .......+...++++||++||++ ++|||++|.|...|.. |...+... |........ ......
T Consensus 242 ~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~F~~~----~~~~~e~lGl~~~G~~~~~~~~G~~~~~ 317 (386)
T PRK08313 242 EPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVPFSWF----EPMWLENLGFAPEGEGWKLTEAGETAIG 317 (386)
T ss_pred cCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccCChHH----HHHHHHHcCCCCCCchHHHHHCCCcCCC
Confidence 543211 11122356678999999999997 6999999999998843 44443332 222110000 000111
Q ss_pred ccccc---cccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 351 EKCGL---GSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 351 ~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
.++|| |..++ ||+.||+|+.+++.++++|+..
T Consensus 318 G~~pvN~~GG~l~--g~p~gatG~~~~~e~~~qlrG~ 352 (386)
T PRK08313 318 GRLPVNPSGGVLS--SNPIGASGMIRFAEAALQVMGK 352 (386)
T ss_pred CCccccCCCcccc--cCCCcHHHHHHHHHHHHHhccc
Confidence 33455 55554 9999999999999999999885
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=200.76 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..|+.+++.+||+|+|+++++++ +|++|+..... . ...++..++..+|+.. |.+
T Consensus 27 ~~L~~~a~~~al~dagi~~~dID----~vi~g~~~~~~-----------------~---~~~~a~~~~~~~Gl~~~~p~~ 82 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPALVQ----EVIMGNVIQAG-----------------V---GQNPAGQAAYHAGLPFGVTKY 82 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCC-----------------c---cCcHHHHHHHHCCCCCCCcce
Confidence 56889999999999999999998 68888642111 0 0113566888999964 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc---------h--hH-----HHHH----cCCCCC-------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS---------N--TI-----AYYK----AGMLSR------- 229 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~---------~--~~-----~~~~----~g~ls~------- 229 (831)
+|+++|+||+.|+..|+++|++|+||++||+|+|.+.... . +. .+.. .++..+
T Consensus 83 ~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ma 162 (388)
T PRK06366 83 TVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLIDAFYFEHMG 162 (388)
T ss_pred eeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccccCcccccccccccccccccccchhhhhhcccCccccccCccHH
Confidence 9999999999999999999999999999999998764210 0 00 0000 111000
Q ss_pred --------------------------------C-CCCc----cc------------c----------CCCCcc-------
Q psy11395 230 --------------------------------D-GICK----TF------------D----------KNADGY------- 243 (831)
Q Consensus 230 --------------------------------~-g~~~----~F------------d----------~~a~G~------- 243 (831)
. ++.+ || + .+.+|.
T Consensus 163 l~A~~~~~~yGitrE~~a~vAv~s~~~A~~np~ag~~~~ei~p~~~~~~d~~~r~~t~e~~~~s~~v~~p~g~lt~~d~s 242 (388)
T PRK06366 163 VSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFNDLDRDEGIRKTTMEDLAKLPPAFDKNGILTAGNSA 242 (388)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHhcCCcccccccccccccccCcccCCHHHHhhCCCccCCCCCEehhhcC
Confidence 0 1110 01 0 012232
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCC
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKL 323 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~ 323 (831)
.++||++++||.+.+.|++.+.++.++|+|++.......... .+...+++++|++|||+++|||++|.|...+.
T Consensus 243 ~~sDGAaAvvl~See~A~~l~~~pv~~I~g~~~~~~~~~~~~-----~~~~~A~~~al~~Agl~~~DiDv~Ei~daFa~- 316 (388)
T PRK06366 243 QLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLDFV-----EAPIPATRKLLEKQNKSIDYYDLVEHNEAFSI- 316 (388)
T ss_pred CcccceeEEEEecHHHHHHcCCCcCEEEEEEEEEecCHHHhc-----ccHHHHHHHHHHHcCCCHHHcceeeccchhHH-
Confidence 259999999999999999999899999999988754221111 12358999999999999999999999987773
Q ss_pred CCHHHHHHHHHHhhhhhhhhcccccccccc-cccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCC
Q psy11395 324 GDPIEIQGLKNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLD 402 (831)
Q Consensus 324 gD~~E~~al~~~f~~~~~~~~~~~~~~~~~-~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~ 402 (831)
.|+..+... +-. . .++ +-|+.++. ||+.||+|+..++.++.+|+.+
T Consensus 317 ---~~l~~le~l-gl~---------g-~~vN~~GG~la~-GHP~GatG~~~~~~l~~qL~~~------------------ 363 (388)
T PRK06366 317 ---ASIIVRDQL-KID---------N-ERFNVNGGAVAI-GHPIGNSGSRIIVTLINALKTR------------------ 363 (388)
T ss_pred ---HHHHHHHHh-CCC---------C-CccCCCCchhhh-CCCcCCCHHHHHHHHHHHHHhc------------------
Confidence 344444333 100 0 122 23454444 9999999999999999999762
Q ss_pred CCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 403 ~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++.+++..+-||.-..+|||.
T Consensus 364 --------------------~~~~g~~~~c~~gg~g~a~~~e~ 386 (388)
T PRK06366 364 --------------------HMKTGLATLCHGGGGAHTLTLEM 386 (388)
T ss_pred --------------------CCCeEEEEEecccChhhEEEEEe
Confidence 23567888888899999999985
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-19 Score=198.82 Aligned_cols=259 Identities=19% Similarity=0.181 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCC--CCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH-------HHc
Q psy11395 99 QRILLELSWKTIEDAGYDSSK--LSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS-------YFY 169 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~--~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris-------~~l 169 (831)
..|+.+++++||+|||+++++ ++ +||+|....... .+ ...++..++ ..+
T Consensus 49 ~eL~~~a~~~al~~agl~~~d~~ID----~vi~G~~~~~~~----------------~~--~~~~a~~~~~~~gl~~~~~ 106 (438)
T PTZ00455 49 EELLATAIQGTLENTGLDGKAALVD----KVVVGNFLGELF----------------SS--QGHLGPAAVGSLGQSGASN 106 (438)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCcC----EEEEEecccccc----------------cc--ccchHHHHHHhccCccccc
Confidence 568899999999999999988 88 678876422110 00 011222333 455
Q ss_pred CCCC-CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch--------------------------hH---
Q psy11395 170 NFTG-PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN--------------------------TI--- 219 (831)
Q Consensus 170 gl~G-ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~--------------------------~~--- 219 (831)
|+.+ |+++|+++|+||+.|++.|+++|++|++|++||+|+|.+..... ++
T Consensus 107 gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 186 (438)
T PTZ00455 107 ALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFTFPCLFAKR 186 (438)
T ss_pred ccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcchHHHHHHH
Confidence 6654 99999999999999999999999999999999999997543110 00
Q ss_pred --HHHHcCCCCCC------------CCCccc----------cC----------------------CCCcceecCceEEEE
Q psy11395 220 --AYYKAGMLSRD------------GICKTF----------DK----------------------NADGYVRGEGAVMLM 253 (831)
Q Consensus 220 --~~~~~g~ls~~------------g~~~~F----------d~----------------------~a~G~v~gEGaaavv 253 (831)
.+.+.+-++.. +.-+|+ +. -.|-..++||++++|
T Consensus 187 ~~ym~~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~sDGAaA~v 266 (438)
T PTZ00455 187 MKYIQEHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQVSDGGAGLV 266 (438)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCccccceEEE
Confidence 01111111110 111121 10 112223589999999
Q ss_pred ecchhhhhhCCCce----EEEEeeeeeccCCCCCCCCC-CCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHH
Q psy11395 254 LKPLSVALNDHDNI----YAIIKGSAITHNGQSNGLTA-PNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIE 328 (831)
Q Consensus 254 L~~~~~A~~~g~~i----~a~I~g~~~~~dg~~~~~~~-p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E 328 (831)
|.+.+.|++.+.++ .++|+|++...+........ ........+++++|++||++++|||++|.|...|. .|
T Consensus 267 l~See~A~~l~~~p~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~AGl~~~DiD~~Ei~daFa~----~~ 342 (438)
T PTZ00455 267 LASEEGLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFTSRAAAQKALSMAGVKPSDLQVAEVHDCFTI----AE 342 (438)
T ss_pred EecHHHHHhcCCCCCCCccEEEEEEEEecCCcccCccccccchHHHHHHHHHHHHcCCCHHHCcEeeecccChH----HH
Confidence 99999999988777 79999998876532110000 01112268999999999999999999999988874 34
Q ss_pred HHHHHHH-hhhhhhhhccc----ccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 329 IQGLKNA-FHSIITYKKNI----KNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 329 ~~al~~~-f~~~~~~~~~~----~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
+..+... |.......... ......++| |..++ .||+.||+|+..++.++.+|+.+
T Consensus 343 l~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la-~GHP~gAtG~~~v~e~~~QLrg~ 405 (438)
T PTZ00455 343 LLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLS-FGHPVGATGVKQIMEVYRQMKGQ 405 (438)
T ss_pred HHHHHHcCCCCCCchHHHHhcCCcccCCCceeeCCCchhh-cCCCcchHHHHHHHHHHHHHhhc
Confidence 4444333 22210000000 000012233 33333 49999999999999999999863
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=196.23 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+|||+++++++ +|++|+...++. .+ .....++..+|+.+ |.+
T Consensus 27 ~~~L~~ea~~~AL~dagl~~~dID----~v~vg~~~~~~~----------------~~----~~~~~~a~~lGl~~~~~~ 82 (398)
T PRK06157 27 AEDLMVEAFLEALADAGIEPKDID----AAWFGTHYDEIG----------------SG----KSGTPLSRALRLPNIPVT 82 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccccc----------------cc----chhHHHHHHcCCCCCCEE
Confidence 367899999999999999999998 688886432210 00 01134677899976 888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch--hH------HHH---------------------HcCCC
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN--TI------AYY---------------------KAGML 227 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~--~~------~~~---------------------~~g~l 227 (831)
+|+++|+|++.||++|+++|++|+||++||+|+|.+..... .. .+. +.|+.
T Consensus 83 ~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~yG~t 162 (398)
T PRK06157 83 RVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASAYAAKYGVS 162 (398)
T ss_pred EEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999997543110 00 000 00000
Q ss_pred C---------------------CCC------------CCcc-cc--CCCCcceecCceEEEEecchhhhhhCCCceEEEE
Q psy11395 228 S---------------------RDG------------ICKT-FD--KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAII 271 (831)
Q Consensus 228 s---------------------~~g------------~~~~-Fd--~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I 271 (831)
. ++. ..++ ++ ..-|-..++||++++||.+.+.|++.+++..+.|
T Consensus 163 ~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~~~v~I 242 (398)
T PRK06157 163 REDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLGLFDCCGVSDGAAAAIVTTPEIARALGKKDPVYV 242 (398)
T ss_pred HHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCchhccCCCCCccEEEEEecHHHHHhhCCCCCeEE
Confidence 0 000 0001 00 0113334799999999999999998887678889
Q ss_pred eeeeeccCCCCCC---CCCCC-HHHHHHHHHHHHHHcCCC--CCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc
Q psy11395 272 KGSAITHNGQSNG---LTAPN-PIQQSYLLQKAWNESNID--VRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK 344 (831)
Q Consensus 272 ~g~~~~~dg~~~~---~~~p~-~~~~~~~i~~al~~Agl~--~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~ 344 (831)
+|++..++..... -..|. ......+++++|++|||+ ++|||++|.|...|.. |+..+... |+.......
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~D~Fs~~----~l~~~e~lGl~~~Ge~~~ 318 (398)
T PRK06157 243 KALQLAVSNGWELQYNGWDGSYFPTTRIAARKAYREAGITDPREELSMAEVHDCFSIT----ELVTMEDLGLSERGQAWR 318 (398)
T ss_pred EEEEEecccccccccccccccccHHHHHHHHHHHHHcCCCCchhcCCEEEEecCChHH----HHHHHHHcCCCCCCchHH
Confidence 9998765422110 01111 223457899999999998 7999999999988843 44444433 222110000
Q ss_pred ----ccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 345 ----NIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 345 ----~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
........++|...-+. .||+.||+|+..++.++.+|+.+
T Consensus 319 ~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~ 364 (398)
T PRK06157 319 DVLDGFFDADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGR 364 (398)
T ss_pred HHHCCCccCCCCeeecCCCCcccCCCcccHhHHHHHHHHHHHhccc
Confidence 00001123444333332 39999999999999999999885
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=194.04 Aligned_cols=258 Identities=15% Similarity=0.157 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|+.+++++||+|||+++.+++ ++++++....+ .+ ....+..++..+|+. .|.+
T Consensus 29 ~~~L~~~A~~~Al~dagl~~~dID----~~i~~~~~~~~-----------------~~--~~~~a~~l~~~lG~~~~~~~ 85 (392)
T PRK06065 29 PQELAWEAASKALDEAGLELKDID----CVVIGSAPDAF-----------------DG--VHMKGEYLSHGSGGIRKPVS 85 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEeccCCcc-----------------cc--cccHHHHHHHHcCCCCCCeE
Confidence 367999999999999999999998 67777521111 00 123456688999987 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch----hH--------------------H------HHHcCC
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN----TI--------------------A------YYKAGM 226 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~----~~--------------------~------~~~~g~ 226 (831)
.|+++|+|+..||..|+++|++|.+|.+||+|++.+..... .. . +.+.|.
T Consensus 86 ~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a~rym~~yG~ 165 (392)
T PRK06065 86 RVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEMHRYMATYGI 165 (392)
T ss_pred EEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999987422100 00 0 000110
Q ss_pred CCCC-----------CCCccccC---------------------CCCcceecCceEEEEecchhhhhhCCCceEEEEeee
Q psy11395 227 LSRD-----------GICKTFDK---------------------NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGS 274 (831)
Q Consensus 227 ls~~-----------g~~~~Fd~---------------------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~ 274 (831)
-..+ +.-+|+.. .-|-..++||++++||.+.+.|++.++++. .|+|+
T Consensus 166 ~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~l~d~~~~~DGAaA~vl~s~e~A~~l~~~~v-~I~g~ 244 (392)
T PRK06065 166 KKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQLLDVSPVSDGAAAIVLASEDLARRYTDTPV-WVEGV 244 (392)
T ss_pred CHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEeCHHHHHhcCCCCE-EEEEE
Confidence 0000 01111110 012224799999999999999998876654 48888
Q ss_pred eeccCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCC--CCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc----cc
Q psy11395 275 AITHNGQSNGLT-APNPIQQSYLLQKAWNESNIDV--RSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK----NI 346 (831)
Q Consensus 275 ~~~~dg~~~~~~-~p~~~~~~~~i~~al~~Agl~~--~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~----~~ 346 (831)
+..++....... .....+...+.+++|+++|+++ +|||++|.|...|.. |+..+... |++.+.... ..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~D~Fs~~----~l~~~E~lG~~~~G~~~~~~~~g~ 320 (392)
T PRK06065 245 GWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPYDPFDYK----ELHHLEGLQLAKRGEAPKLLKEGV 320 (392)
T ss_pred EEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEecCCChHH----HHHHHHHcCCCCCCcHHHHHHCCC
Confidence 876554321111 1123445689999999999985 999999999998843 44333322 111110000 00
Q ss_pred ccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 347 KNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 347 ~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
......++| |+.++. ||+.||+|+.+++.+++||+..
T Consensus 321 ~~~~G~~pvN~~GG~la~-Ghp~gatG~~~~~e~~~QLrg~ 360 (392)
T PRK06065 321 FDIDGDIPSSPSGGLLGV-GNPIAAAGLMKVISIYWQLKGT 360 (392)
T ss_pred ccCCCCeeecCCCccccC-CCCccHHHHHHHHHHHHHHhcc
Confidence 011123344 444443 9999999999999999999875
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=196.12 Aligned_cols=252 Identities=18% Similarity=0.151 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++.+||+|||+++.+++ +++.+.. . . +. ....++..+|+++ |...
T Consensus 26 ~~L~~eA~~~Al~DAgl~~~dID----~~~~~~~---~------------~-----~~----~~~~~~~~lGl~~~~~~~ 77 (388)
T PRK08142 26 AQLHAEVAKGALADAGLSLADVD----GYFCAGD---A------------P-----GL----GPASMVDYLGLKLRHVDS 77 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEcCC---C------------C-----Cc----cHHHHHHhCCCCCeeecc
Confidence 46889999999999999999998 3443110 0 0 00 0134888999976 8889
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc-h-h-----H------HHH-HcCCCCC--------------
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS-N-T-----I------AYY-KAGMLSR-------------- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~-~-~-----~------~~~-~~g~ls~-------------- 229 (831)
++++|+|+..++..|+++|++|.||++||+|++.+.... . . . .+. ..|+..+
T Consensus 78 v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~a~~ym~~y 157 (388)
T PRK08142 78 TETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMCAMRHMHEY 157 (388)
T ss_pred ccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988743210 0 0 0 000 0011100
Q ss_pred ----------------CCCCccccC---------------------CCCcceecCceEEEEecchhhhhhCCCceEEEEe
Q psy11395 230 ----------------DGICKTFDK---------------------NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272 (831)
Q Consensus 230 ----------------~g~~~~Fd~---------------------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~ 272 (831)
...-+|+.. .-|...++||++++||.+.+.|++.+ ++.+.|+
T Consensus 158 G~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~-~~~v~I~ 236 (388)
T PRK08142 158 GTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK-RPLVKVL 236 (388)
T ss_pred CcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC-CCCEEEE
Confidence 001111110 12334469999999999999998876 4568899
Q ss_pred eeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhc-----cc
Q psy11395 273 GSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKK-----NI 346 (831)
Q Consensus 273 g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~-----~~ 346 (831)
|++..++................++++||++||++|+|||++|.|.+.|.. |...+... |++.+.... ..
T Consensus 237 g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD~Fs~~----~~~~~E~lGl~~~Ge~~~~v~~g~~ 312 (388)
T PRK08142 237 GAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTIT----VLMQLEDLGFCKKGEGGKFVADGNL 312 (388)
T ss_pred EEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEeccchHH----HHHHHHHcCCCCCCchHHHHHCCCc
Confidence 998876653321111223455689999999999999999999999998854 44444333 322211100 00
Q ss_pred ccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 347 KNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 347 ~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
......+|| |..+++ ||+.+|+|+.+++.+++||+..
T Consensus 313 ~~~~G~lPvN~sGG~l~~-G~p~gatG~~~~~E~~~QLrG~ 352 (388)
T PRK08142 313 ISGVGKLPFNTDGGGLCN-NHPANRGGMTKVIEAVRQLRGE 352 (388)
T ss_pred ccCCCCccccCCChhhcC-CCcCcccHHHHHHHHHHHHcCC
Confidence 000134666 666666 9999999999999999999874
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=194.55 Aligned_cols=261 Identities=17% Similarity=0.154 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLL 177 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~t 177 (831)
..|+.+++.+||+|||+++++++ +|++|+...++.. .. .... ..+. ....++.| |+++
T Consensus 27 ~eLa~eA~~~AL~dAgl~~~dID----~vi~g~~~~~~~~----------~~----~~~~-~~~~--~~~~~~~g~~~~~ 85 (403)
T PRK06289 27 ADLTREVVDGTLAAAGVDADDIE----VVHVGNFFGELFA----------GQ----GHLG-AMPA--TVHPALWGVPASR 85 (403)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccccccc----------cc----cccc-hHHH--HHhhcCCCCceee
Confidence 57889999999999999999998 6888876444310 00 0000 1111 12334444 8999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH---HH------HHcCC---CC-C---------------
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI---AY------YKAGM---LS-R--------------- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~---~~------~~~g~---ls-~--------------- 229 (831)
|+++|+|++.||+.|+.+|++|+||++||+|++.+....... .+ ...++ .. +
T Consensus 86 v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~y~~~yG 165 (403)
T PRK06289 86 HEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFARVADEYDRRYG 165 (403)
T ss_pred cccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998754321100 00 00000 00 0
Q ss_pred ---------------CCCCccccCC--------------------------CCcceecCceEEEEecchhhhhhCCC-ce
Q psy11395 230 ---------------DGICKTFDKN--------------------------ADGYVRGEGAVMLMLKPLSVALNDHD-NI 267 (831)
Q Consensus 230 ---------------~g~~~~Fd~~--------------------------a~G~v~gEGaaavvL~~~~~A~~~g~-~i 267 (831)
...-+|.... .|-..++||++++||.+.+.|++.+. ++
T Consensus 166 ~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~a~~l~~~~~ 245 (403)
T PRK06289 166 LDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDAYLRDYADARP 245 (403)
T ss_pred CCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHHHHHHhccCCC
Confidence 0011111000 11123589999999999999988776 67
Q ss_pred EEEEeeeeeccCCCCCCC------CCC-CHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhh
Q psy11395 268 YAIIKGSAITHNGQSNGL------TAP-NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSI 339 (831)
Q Consensus 268 ~a~I~g~~~~~dg~~~~~------~~p-~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~ 339 (831)
.++|+|++..++...... ..| .......+.++||++|||+++|||++|.|...|.. |+..+... |++.
T Consensus 246 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~D~fa~~----~l~~le~lGl~~~ 321 (403)
T PRK06289 246 IPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVHDCFTPS----EYLAIDHIGLTGP 321 (403)
T ss_pred CEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeeeccchHH----HHHHHHHcCCCCC
Confidence 799999987654321100 011 12335679999999999999999999999998853 44333332 3321
Q ss_pred hhhhccc----ccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 340 ITYKKNI----KNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 340 ~~~~~~~----~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
+...... ......++|+..-+. .||+.||+|+..++.++.+|+.+
T Consensus 322 Ge~~~~v~~G~~~~~G~lpvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~ 372 (403)
T PRK06289 322 GESWKAIENGEIAIGGRLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGT 372 (403)
T ss_pred CcHHHHHhcCCcccCCCeeEcCCCCccccCCCccchHHHHHHHHHHHHhcc
Confidence 1110000 001123444333333 39999999999999999999874
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=196.31 Aligned_cols=276 Identities=16% Similarity=0.191 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+.+++.+||+|||+++++++ +|++|+..... . ...++..++..+|+. .|.+
T Consensus 28 ~~L~~~A~~~Al~dAgl~~~dID----~vi~g~~~~~~-------------------~-~~~~a~~v~~~lGl~~~~p~~ 83 (426)
T PRK08170 28 SDLAVAAGRALLNRQPFAPDDLD----EVILGCAMPSP-------------------D-EANIARVVALRLGCGEKVPAW 83 (426)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCC-------------------C-cChHHHHHHHHhCcCCCceee
Confidence 56889999999999999999998 68888653210 0 013556788999994 4999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cc---h------------------h-------HHHHH----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PS---N------------------T-------IAYYK---- 223 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~---~------------------~-------~~~~~---- 223 (831)
+|+++|+|++.|++.|+++|++|.+|++||+|+|.+.. |. . + ..+..
T Consensus 84 ~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T PRK08170 84 TVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGWYAAKSIGQKLAALGKLRPSYLAPVIG 163 (426)
T ss_pred eccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecccCCccccccccccchhccccccccCccccccccccccccccccc
Confidence 99999999999999999999999999999999996543 10 0 0 00000
Q ss_pred --cCCCCC----C----------------------------C-CC------------------ccccC------------
Q psy11395 224 --AGMLSR----D----------------------------G-IC------------------KTFDK------------ 238 (831)
Q Consensus 224 --~g~ls~----~----------------------------g-~~------------------~~Fd~------------ 238 (831)
.++..+ . . .. +|++.
T Consensus 164 ~~~g~~~~~~~~~~a~~a~~~~~~ygitre~~a~vav~s~~~a~~A~~~g~~~~i~pv~~~~~np~a~de~~r~~~t~e~ 243 (426)
T PRK08170 164 LLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLKEVVPLFDRDGKFYDHDDGVRPDSSMEK 243 (426)
T ss_pred cCccccccccCcCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcceEeeeecCCCCeeccCCCCCCCCCHHH
Confidence 010000 0 0 00 11111
Q ss_pred --------C--------CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHH
Q psy11395 239 --------N--------ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWN 302 (831)
Q Consensus 239 --------~--------a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~ 302 (831)
+ .|-..++||++++||.+++.|++.+.++.++|.+++....... .+ ..+...+++++|+
T Consensus 244 ~~~~~~v~~~p~~~lt~~~~s~~~DGAaA~vl~s~e~A~~~~~~p~~~i~~~~~~~~~~~--~~---~~~~~~a~~~al~ 318 (426)
T PRK08170 244 LAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWAALDPS--QM---GLGPVHAATPLLQ 318 (426)
T ss_pred HhcCCCcccCCCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEeeEeeeCch--hh---cccHHHHHHHHHH
Confidence 0 2223468999999999999999999999889999877543211 11 1245689999999
Q ss_pred HcCCCCCCcceEEecCCCCCCCCHHHHHHHHH---H-hhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHH
Q psy11395 303 ESNIDVRSLGYIECHGTGTKLGDPIEIQGLKN---A-FHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILK 376 (831)
Q Consensus 303 ~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~---~-f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik 376 (831)
+|||+++|||++|.|...+.. |+..+.. . |++...............+|+-.-+. +||+.||+|+..++.
T Consensus 319 ~aGl~~~did~~ei~daFa~~----~l~~l~~le~lGf~~~G~g~~~~~G~~~~~pvN~~GG~la~GHP~GAtG~~~~~~ 394 (426)
T PRK08170 319 RHGLTLEDLDLWEINEAFAAQ----VLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGARIVLH 394 (426)
T ss_pred HcCCCHHHcCEEEecchhHHH----HHHHHHHhccccchhcccccccccCCCCcceecCCCCHHHhCCCccCccHHHHHH
Confidence 999999999999999777732 3322221 1 22211110000000011233222222 399999999999999
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++.+|++. +.++++++...-||.-..+|||+
T Consensus 395 l~~~l~~~--------------------------------------~~~~g~~~~c~~gg~g~a~~~e~ 425 (426)
T PRK08170 395 LLHALKRR--------------------------------------GTKRGIAAICIGGGQGGAMLLER 425 (426)
T ss_pred HHHHHHhh--------------------------------------CCCeEEEEEecCCChhheEEEEe
Confidence 99998761 23578888889999999999985
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=196.76 Aligned_cols=251 Identities=17% Similarity=0.167 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-C-Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-G-PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-ps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|..... +. ...++..++...||. + |.+
T Consensus 32 ~~L~~~a~~~al~~agl~~~~Id----~vi~G~~~~~-------------------~~-~~~~ar~~~l~aGl~~~~p~~ 87 (430)
T TIGR02446 32 VDLGKMVVSELLARSEIDPKLIE----QLVFGQVVQM-------------------PE-APNIAREIVLGTGMNVHTDAY 87 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCc-------------------Cc-cchHHHHHHHhCCCCCCCchh
Confidence 56889999999999999999988 5888864210 00 123666777778986 4 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cchhH----------------H--H---HH------c----
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSNTI----------------A--Y---YK------A---- 224 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~~~----------------~--~---~~------~---- 224 (831)
+|+++|+||+.|++.|+++|++|++|++||||+|.+.. |.... . + .. .
T Consensus 88 ~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
T TIGR02446 88 SVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGLKDLMPVPP 167 (430)
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEcccCCcccccccccccccccccccccCccccccccchhhhhcccCc
Confidence 99999999999999999999999999999999999853 21000 0 0 00 0
Q ss_pred -------CC--------------CCCC------------CC----------------Ccc--------------------
Q psy11395 225 -------GM--------------LSRD------------GI----------------CKT-------------------- 235 (831)
Q Consensus 225 -------g~--------------ls~~------------g~----------------~~~-------------------- 235 (831)
+. +++. .. .+|
T Consensus 168 ~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~a~~A~~~g~~~~ei~p~~~np~a~~~~~D~~~r~~~t~e~~ 247 (430)
T TIGR02446 168 AVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGEVMTAFPPPYKQWIAEDNNIRHNSTLAGY 247 (430)
T ss_pred ccccccCCCcHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeeeeeecCCceEecccCCCCCCCCHHHH
Confidence 00 0000 00 011
Q ss_pred ------ccC------CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy11395 236 ------FDK------NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303 (831)
Q Consensus 236 ------Fd~------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~ 303 (831)
|+. ..|-..++||++++||.+.+.|++.+.++.+.|+|++........ .. ..+...+++++|++
T Consensus 248 ~~~~~i~~p~~g~lt~~~~~~~~DGAaA~il~se~~A~~l~~~p~~~i~~~~~~~~~~~~-~~---~~~~~~a~~~al~~ 323 (430)
T TIGR02446 248 AKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVWQ-DM---LMGPSYATPLALQR 323 (430)
T ss_pred hcCCceecCCCCceechhcCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEeeccCchH-hh---cccHHHHHHHHHHH
Confidence 110 112233599999999999999999998888999998765221100 01 11224688999999
Q ss_pred cCCCCCCcceEEecCCCCCCCCHHHHHHHHHH----hhhhh--hh-hccccccccccc-ccccCCCCcccchhhhHHHHH
Q psy11395 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA----FHSII--TY-KKNIKNFYEKCG-LGSVKTNLGHLEAASGITGIL 375 (831)
Q Consensus 304 Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~----f~~~~--~~-~~~~~~~~~~~~-vgs~K~~iGH~~~AsG~~~li 375 (831)
|||+++|||++|.|...+. .|+..+... |.... .. .....+. .++. -|+.++ .||+.||+|+..++
T Consensus 324 Agl~~~Did~~Ei~daFa~----~~l~~~e~lg~~~~~~~~~g~~~~~G~~~~-~pvN~~GG~la-~GhP~gatG~~~v~ 397 (430)
T TIGR02446 324 AGLALSDLTLIDMHEAFAA----QTLANVQMFASDKFAQENLGRSKAMGEIDM-SKFNVLGGSIA-YGHPFAATGARMIT 397 (430)
T ss_pred cCCCHHHCCEEEeccccHH----HHHHHHHHhcCcchhhhcccccccCCCCCC-CccCCCCCHHh-cCCCccccHHHHHH
Confidence 9999999999999988874 344444433 22210 00 0000000 1222 233333 49999999999999
Q ss_pred HHHHHHhc
Q psy11395 376 KIILCLKN 383 (831)
Q Consensus 376 k~~l~L~~ 383 (831)
.++.+|+.
T Consensus 398 e~~~qL~g 405 (430)
T TIGR02446 398 QTLRELKR 405 (430)
T ss_pred HHHHHHhh
Confidence 99999976
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=190.50 Aligned_cols=264 Identities=16% Similarity=0.187 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+..+..++|+++|+++++++. |++|..... +.....++..++..-|| +-|.+
T Consensus 30 ~~L~~~~~~~~l~r~~i~~~~id~----vi~G~~~~~-------------------g~~g~n~aR~~al~aglp~~vp~~ 86 (417)
T PRK06025 30 QHLAATVLKALAERNGLNTADVDD----IIWSTSSQR-------------------GKQGGDLGRMAALDAGYDIKASGV 86 (417)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCCE----EEEEcCCCc-------------------CcccCcHHHHHHHhCCCCCCCCee
Confidence 456777899999999999998884 777764211 11012367777777787 56999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHH-----------HHH--c-------------------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIA-----------YYK--A------------------- 224 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~-----------~~~--~------------------- 224 (831)
||+..|+|||.|+.+|++.|++|++|++|+||+|.|.....+.. ... .
T Consensus 87 tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mg~~ae~~a 166 (417)
T PRK06025 87 TLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQGVCGDAIA 166 (417)
T ss_pred eeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcccccccccCCCCcccccccCcccccccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999873321100 000 0
Q ss_pred ---------------------------CC----------------CCCCCCC------------c-cccC------CCCc
Q psy11395 225 ---------------------------GM----------------LSRDGIC------------K-TFDK------NADG 242 (831)
Q Consensus 225 ---------------------------g~----------------ls~~g~~------------~-~Fd~------~a~G 242 (831)
|. +..|... + .|+. ..+|
T Consensus 167 ~~~~isRe~~D~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~~~~~~De~~R~~~t~e~la~L~p~F~~~~~~~~~~~g 246 (417)
T PRK06025 167 TMEGITREALDALGLESQRRAARAIKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIADYPLDDKG 246 (417)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEeeEEcCCCCEEecCCCCCCCCCCHHHHcCCCCCccccccccccCCc
Confidence 00 0111111 1 1432 0134
Q ss_pred c-------------------------eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHH
Q psy11395 243 Y-------------------------VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL 297 (831)
Q Consensus 243 ~-------------------------v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i 297 (831)
. .++||++++||++.+.|++.|.+++++|.|++...+..... ..+...++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~vTagNss~~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~~p~~~-----~~~p~~Ai 321 (417)
T PRK06025 247 TTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDDPTLM-----LNAPVPAA 321 (417)
T ss_pred cccccccccccccccccccccccccCCCCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCchhh-----cccHHHHH
Confidence 4 25899999999999999999999999999998875433211 12335799
Q ss_pred HHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHH
Q psy11395 298 QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGIL 375 (831)
Q Consensus 298 ~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~li 375 (831)
+++|+++|++++|||++|.| |......+ .+.++-. ..++.+..-+..+||+.|++|++.++
T Consensus 322 ~~aL~~AGl~~~DID~~ei~-------eaFa~~~l~~~~~lg~~----------~~~vN~~GG~ia~GHp~GaTGa~~v~ 384 (417)
T PRK06025 322 KKVLAKAGLTKDDIDLWEIN-------EAFAVVAEKFIRDLDLD----------RDKVNVNGGAIALGHPIGATGSILIG 384 (417)
T ss_pred HHHHHHcCCCHHHCcEEEEc-------hHHHHHHHHHHHHcCCC----------hhhccccCCHHhcCCchhHHHHHHHH
Confidence 99999999999999999998 33333222 2222210 13456666667789999999999999
Q ss_pred HHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 376 KIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 376 k~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.++.+|+.+ +.+++++.-.+.||.-..+|||.
T Consensus 385 ~ll~qL~~~--------------------------------------g~~~Gl~~~c~~GG~g~A~lle~ 416 (417)
T PRK06025 385 TVLDELERR--------------------------------------GLKRGLVTMCAAGGMAPAIIIER 416 (417)
T ss_pred HHHHHHHHh--------------------------------------CCCeEEEEEEeeccceeEEEEEe
Confidence 999999652 12456777778899999999985
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=191.64 Aligned_cols=257 Identities=17% Similarity=0.139 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHH-HHHHHcCCCC-C
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLAN-RISYFYNFTG-P 174 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~-ris~~lgl~G-p 174 (831)
....|+.+++.+||+|+|+++++++ .|++|+...++. + ..++. .+...+++.+ |
T Consensus 22 ~~~el~~~a~~~Al~~agl~p~dID----~vi~g~~~~~~~-----------------g---~~~~~~~~~~~lg~~~~p 77 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGVAAGAVE----EACLGQVLGAGE-----------------G---QNCAQQAAMHAGGLQEAP 77 (393)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEEccCCcc-----------------c---CcHHHHHHHHcCCCCCCc
Confidence 3467888999999999999999988 688887654431 0 01122 2556678766 9
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc-h------hHH-H-----------------------HH
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS-N------TIA-Y-----------------------YK 223 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~-~------~~~-~-----------------------~~ 223 (831)
+++|+++|+|++.|++.|+++|++|++|++||+|+|.+.... . ... . .+
T Consensus 78 ~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~s~~~~~~~~~ 157 (393)
T cd00826 78 AIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQAGAEAAEK 157 (393)
T ss_pred EEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccchhHHHHHHhCChhhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999864321 0 000 0 01
Q ss_pred cCCCCC--------C--C----CCccccC------------------------CCCcceecCceEEEEecchhhhhhCCC
Q psy11395 224 AGMLSR--------D--G----ICKTFDK------------------------NADGYVRGEGAVMLMLKPLSVALNDHD 265 (831)
Q Consensus 224 ~g~ls~--------~--g----~~~~Fd~------------------------~a~G~v~gEGaaavvL~~~~~A~~~g~ 265 (831)
.|.... . + ...|+.. ..|-..++||++++||.+.+.|++.|.
T Consensus 158 ~G~~~e~~a~v~~~~~~~~~~a~~np~a~~~~~~t~e~~~~~~~i~~~~~pl~~~~~~~~~DGAAA~vl~S~~~a~~l~l 237 (393)
T cd00826 158 DGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSEAEAQKHGL 237 (393)
T ss_pred cCCCHHHEEEEEEecCCCCEEEecCCCCCCCCCCCHHHHhcCCCccCCCCCEechhcCCcCCCeEEEEEecHHHHHHcCC
Confidence 111100 0 0 0001111 011122589999999999999988773
Q ss_pred -ceEEEEeeeeeccCCCCCCCCCC------CHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hh
Q psy11395 266 -NIYAIIKGSAITHNGQSNGLTAP------NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FH 337 (831)
Q Consensus 266 -~i~a~I~g~~~~~dg~~~~~~~p------~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~ 337 (831)
.-...|++.+...+.... ...| ...+...+++++|++|||+++|||++|.|...+. .|+..+... |.
T Consensus 238 ~~~~v~i~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~al~~Agi~~~DID~~Ei~d~Fa~----~~l~~~e~lgl~ 312 (393)
T cd00826 238 QSKAREIQALEMITDMAST-FEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAA----NACATNEALGLC 312 (393)
T ss_pred cccccccceEEEEEeeecc-ccCccccccccceeHHHHHHHHHHHcCCCHHHcCeeehhhhhHH----HHHHHHHHhCCC
Confidence 112344444333221110 0111 2334578999999999999999999999977763 344444433 22
Q ss_pred hhhhhhccc----ccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 338 SIITYKKNI----KNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 338 ~~~~~~~~~----~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
......... ......++| |+.++. ||+.||+|+..++.++++|+.
T Consensus 313 ~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~-GhP~gAtG~~~~~e~~~qL~g 364 (393)
T cd00826 313 PEGQGGALVDRGDNTYGGKSIINPNGGAIAI-GHPIGASGAAICAELCFELKG 364 (393)
T ss_pred cccchhhhhhcCccccCCcceECCCCchhhc-CCCccccHHHHHHHHHHHHhh
Confidence 211000000 000112344 333333 999999999999999999976
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=192.40 Aligned_cols=224 Identities=15% Similarity=0.184 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCcc
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSL 176 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~ 176 (831)
....|+.+++.+||++||+++++++ .|++++...++ .....+..|...||++++++
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~~Id----~li~~~~~~~~--------------------~~p~~a~~v~~~Lgl~~~~~ 149 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAEDID----AVIVACSNMQR--------------------AYPAMAIEIQQALGIEGFAF 149 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCCCC--------------------CCcHHHHHHHHhcCCCCcEE
Confidence 3457999999999999999998887 57777653322 01224677999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||..|+++|++|.+|.+||+|+|.+.... -|+....++++||||+|+||++
T Consensus 150 ~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~------------------~~~d~~~~~lfGDgAaA~vL~~ 211 (372)
T PRK07515 150 DMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICSGHL------------------NFRDRDSHFIFGDVATAVIVER 211 (372)
T ss_pred EecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeecccccc------------------cccCCCCCEEecCccEEEEEee
Confidence 9999999999999999999999999999999999743110 1222235799999999999998
Q ss_pred hhhhhhCC-CceEEEEeeeeecc-----CCCC-----CCCCCC------CHH--------HHHHHHHHHHHHcCCCCCCc
Q psy11395 257 LSVALNDH-DNIYAIIKGSAITH-----NGQS-----NGLTAP------NPI--------QQSYLLQKAWNESNIDVRSL 311 (831)
Q Consensus 257 ~~~A~~~g-~~i~a~I~g~~~~~-----dg~~-----~~~~~p------~~~--------~~~~~i~~al~~Agl~~~dI 311 (831)
.+.+..++ ..|++......... .|.. .....+ ++. ...++|+++|+++|++++||
T Consensus 212 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~dI 291 (372)
T PRK07515 212 ADTATSAGGFEILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPADV 291 (372)
T ss_pred ccccccCCCceEEEEEeecccccceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 76553222 24555432110000 1100 001111 222 25688999999999999999
Q ss_pred ceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHH
Q psy11395 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik 376 (831)
|||.+|.+++.+.|.+ +.++|+..... ...+ .+-..+||+.+|+=...|-.
T Consensus 292 d~~~~Hq~~~~~~d~~----~~~llg~~~~~--------~~~~--~~~~~~GNt~sasi~~~L~~ 342 (372)
T PRK07515 292 KRFWLHQANINMNQLI----GKKVLGRDATP--------EEAP--VILDEYANTSSAGSIIAFHK 342 (372)
T ss_pred CEEEECCCCHHHHHHH----HHHhccCCCCh--------hhce--EeHHhcCCchhhHHHHHHHH
Confidence 9999999999988875 23334421100 1111 12356799999886555543
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-18 Score=189.88 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHH--cCCCCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYF--YNFTGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~--lgl~Gps~ 176 (831)
..|+.+++++||+|+|+++++++ .|++|+....- . ...++..++.. ++...|++
T Consensus 32 ~eL~~~a~~~al~~agl~~~~Id----~vv~G~~~~~~-------------------~-~~~~~r~~~l~~gl~~~~p~~ 87 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGERLG----EVVAGAVLKHS-------------------R-DFNLTRECVLGSALSPYTPAY 87 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccCC-------------------c-cccHHHHHHHHcCCCCCCcee
Confidence 46889999999999999999998 58888642200 0 01134444444 45568999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-H---------------------------HHH------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-I---------------------------AYY------ 222 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-~---------------------------~~~------ 222 (831)
+|+++|+||+.|+..|++.|++|.+|++||||+|.+...... . ...
T Consensus 88 ~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (427)
T PRK09268 88 DLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLELNRAKTTGDRLKALGKLRPKHLAPEIP 167 (427)
T ss_pred eeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccCCCcccccccccccccccccccccCcccccccccccccccccCc
Confidence 999999999999999999999999999999999986532100 0 000
Q ss_pred H-----cCC--------------CCCC-------------------C----CCcc-------------------------
Q psy11395 223 K-----AGM--------------LSRD-------------------G----ICKT------------------------- 235 (831)
Q Consensus 223 ~-----~g~--------------ls~~-------------------g----~~~~------------------------- 235 (831)
. .+. ++.. | ...|
T Consensus 168 ~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~A~~A~~~g~~~~einP~~~~~~D~~~r~~~t~e~l~~~~~v 247 (427)
T PRK09268 168 RNGEPRTGLSMGEHAAITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFLGLTRDNNLRPDSSLEKLAKLKPV 247 (427)
T ss_pred cccccccCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccCccCcccCCCCCCCCCHHHHhCCCcc
Confidence 0 000 0000 0 0022
Q ss_pred ccCCCCcce-------ecCceEEEEecchhhhhhCCCceEEEE-eeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy11395 236 FDKNADGYV-------RGEGAVMLMLKPLSVALNDHDNIYAII-KGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307 (831)
Q Consensus 236 Fd~~a~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~I-~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~ 307 (831)
|+...+|.+ ++||++++||.+.+.|++.+.++.++| .+....++..... ..-..+...+++++|++|||+
T Consensus 248 ~~p~~~g~lt~~n~~~~~DGAaAvvl~s~~~A~~l~~~p~~~i~~~~~~~~~~~~~~--~~~~~~~~~a~~~a~~~AGl~ 325 (427)
T PRK09268 248 FGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVHGK--EGLLMAPAYAVPRLLARNGLT 325 (427)
T ss_pred cccCCCCceeccccCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEEcCCccccc--chhhccHHHHHHHHHHHcCCC
Confidence 222113433 689999999999999999888887777 5555555532100 001124456999999999999
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhcccccccccccccccCCC--CcccchhhhHHHHHHHHHHHhcC
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKKNIKNFYEKCGLGSVKTN--LGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~~~~~~~~~~~vgs~K~~--iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
++|||++|.|...+.. -.+|+..+... |++..............++|+..-+. +||+.||+|+..++.++.+|+.+
T Consensus 326 ~~Did~~Ei~d~Fa~~-~l~~l~~~e~lG~~~~g~g~~~~~G~~~~~pvN~~GG~la~GhP~gATG~~~v~e~~~QL~~~ 404 (427)
T PRK09268 326 LQDFDFYEIHEAFASQ-VLATLKAWEDEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGRIVATLAKLLAEK 404 (427)
T ss_pred HHHCCEEEeccccHHH-HHHHHHHhhhccccccccccccccCcCCCcccCCCcCHHhcCCCcccchHHHHHHHHHHHHhc
Confidence 9999999999888743 12233222211 22211110000000012344333333 39999999999999999999762
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 385 KLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 385 ~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++++++..+-||.-..+|||.
T Consensus 405 --------------------------------------~~~~gl~~~c~~gG~g~a~~~e~ 427 (427)
T PRK09268 405 --------------------------------------GSGRGLISICAAGGQGVTAILER 427 (427)
T ss_pred --------------------------------------CCCEEEEEEcccCchheEEEEeC
Confidence 23678999999999999999974
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=182.10 Aligned_cols=283 Identities=15% Similarity=0.145 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHcC-CCC-CCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCc
Q psy11395 99 QRILLELSWKTIEDAG-YDS-SKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG-~~~-~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps 175 (831)
..|+.+++++||+||| +++ ++++ |+++++. ..+. .. ......++..+|+. .|.
T Consensus 26 ~eL~~eA~~~Al~DAG~l~~~~dId----~~~~~~~-~~~~------------~~-------~~~~~~~~~~lg~~~~~~ 81 (385)
T PRK06066 26 REMMFEAASRAYKDAGNINPRRDVD----SFISCQE-DFWE------------GI-------AIADEFAPDQIGGAMRPT 81 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCChhcCC----EEEEecC-cccC------------cc-------cccchhHHHHcccCCCCe
Confidence 5689999999999999 986 6888 5766532 1110 00 00112355778885 487
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch------------------------hHHH------HHcC
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN------------------------TIAY------YKAG 225 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~------------------------~~~~------~~~g 225 (831)
+.| |+|+..+++.|+++|++|.||++||.|++.+..... ++.+ .+.|
T Consensus 82 ~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~p~~~~al~a~rym~~yG 158 (385)
T PRK06066 82 MTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSDILTFSDVVKFAMDPIYVRPIGPPNPHFIAGLDAVKFMSRKG 158 (385)
T ss_pred EEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccCccchhhhhhcccCcceecccCCCcHHHHHHHHHHHHHHHHC
Confidence 776 899999999999999999999999999886432100 0000 0111
Q ss_pred CCCCC-----------CCCccccC---------------------CCCcceecCceEEEEecchhhhhhCCCceEEEEee
Q psy11395 226 MLSRD-----------GICKTFDK---------------------NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKG 273 (831)
Q Consensus 226 ~ls~~-----------g~~~~Fd~---------------------~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g 273 (831)
....+ +.-+|... ..|-..++||++++||.+.+.|++.++++. +|+|
T Consensus 159 ~t~E~lA~Vavk~r~nA~~NP~A~~r~~~t~edvl~S~~ia~Pl~~~d~~~~~DGAaAvvl~s~~~a~~l~~~pv-~I~g 237 (385)
T PRK06066 159 ITREDLALVVEKNKKAGLSNPRASYASNISLEDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVAKKLTDDPV-WIKG 237 (385)
T ss_pred cCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCchhhccCCCCCceEEEEEeCHHHHHhcCCCCE-EEEE
Confidence 10000 00111100 123334799999999999999998887765 8998
Q ss_pred eeeccCCCCCCCCC-CCHHHHHHHHHHHHHHcCCC--CCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhh----cc
Q psy11395 274 SAITHNGQSNGLTA-PNPIQQSYLLQKAWNESNID--VRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYK----KN 345 (831)
Q Consensus 274 ~~~~~dg~~~~~~~-p~~~~~~~~i~~al~~Agl~--~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~----~~ 345 (831)
++..++........ ........+.+++|++|||+ ++|||++|.|...|.. |+..+... |+...... ..
T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~D~Ft~~----~l~~~e~lG~~~~Ge~~~~v~~G 313 (385)
T PRK06066 238 IGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVDDRYSYK----ELQHIEALRLSEEPEKDSLLREG 313 (385)
T ss_pred EEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEecCChHH----HHHHHHHcCCCCCCchHHHHHCC
Confidence 88765422211111 11233447999999999997 6999999999988853 44333322 22211100 00
Q ss_pred cccccccccccccCCCC--cccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNL--GHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENK 423 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~i--GH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~ 423 (831)
......++||...-+.+ ||+.||+|+.+++.++++|+.+.-.. +.+
T Consensus 314 ~~~~~G~~PvN~~GG~la~Ghp~gatG~~~v~e~~~QL~g~Ag~r--------------------------------Q~~ 361 (385)
T PRK06066 314 NFDPQGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGEAGAR--------------------------------QGK 361 (385)
T ss_pred CCCCCCCccccCCCchhcCCCccchhHHHHHHHHHHHHccccccc--------------------------------CCC
Confidence 00111334553333332 99999999999999999998742110 023
Q ss_pred ccEEEEcccC--CCCceeEEEEcc
Q psy11395 424 LRIAGVSSFG--SGGTNAHVVLSE 445 (831)
Q Consensus 424 ~r~a~v~sfG--~gG~nahvil~~ 445 (831)
.+++++.+.| ++++.+.+|||+
T Consensus 362 a~~~l~~~~gg~~~~~~~v~v~~~ 385 (385)
T PRK06066 362 AERAVVASWRGIPTLTGSVVVVER 385 (385)
T ss_pred CcEEEEcCCCccCCccEEEEEEeC
Confidence 5678888877 557777777763
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=178.53 Aligned_cols=258 Identities=18% Similarity=0.213 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-C-Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-G-PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-ps~ 176 (831)
..|+.++..+++ +|++ ++++ .||+|...+.. ..++..++...|+. + |++
T Consensus 26 ~~L~~~a~~~~~--~gi~-~~Id----~vi~G~~~~~~----------------------~~~~r~~~~~~Gl~~~~p~~ 76 (361)
T PRK06690 26 QQLAAPLLTFLS--KGME-REID----DVILGNVVGPG----------------------GNVARLSALEAGLGLHIPGV 76 (361)
T ss_pred HHHHHHHHHHHH--ccch-hhcC----EEEEEecCCCc----------------------chHHHHHHHHcCCCCCCCce
Confidence 567777777764 4885 6777 58888652210 12344577888886 4 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh--------------HH------HHHcCCCCC-------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT--------------IA------YYKAGMLSR------- 229 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~--------------~~------~~~~g~ls~------- 229 (831)
+|+++|+||+.|+..|++.|++|++|++||||+|.+...... +. +.+.|+...
T Consensus 77 tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitre~~d~~A~ 156 (361)
T PRK06690 77 TIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITREMQDEYAC 156 (361)
T ss_pred ehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999987642110 00 001110000
Q ss_pred -----------CCC---------------C--------------ccccCCCCcce-------ecCceEEEEecchhhhhh
Q psy11395 230 -----------DGI---------------C--------------KTFDKNADGYV-------RGEGAVMLMLKPLSVALN 262 (831)
Q Consensus 230 -----------~g~---------------~--------------~~Fd~~a~G~v-------~gEGaaavvL~~~~~A~~ 262 (831)
.+. . ..|+. +|.+ ++||++++||.+.+.|++
T Consensus 157 ~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~--~g~lt~~~~~~~~DGAaAvvl~s~e~A~~ 234 (361)
T PRK06690 157 LSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLH--NGTVTAGNSCGVNDGACAVLVMEEGQARK 234 (361)
T ss_pred HHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccC--CCceeccccCCCCCCeEEEEEecHHHHHH
Confidence 000 1 11221 2333 589999999999999999
Q ss_pred CCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhh
Q psy11395 263 DHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITY 342 (831)
Q Consensus 263 ~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~ 342 (831)
.|.++.+.|.|++....... . ...+...+++++|+++|++++|||++|.|...+.. +...+. .++-
T Consensus 235 lg~~p~~~i~~~~~~~~~~~--~---~~~~~~~a~~~al~~Agl~~~Did~~ei~eafa~~----~~~~~e-~lgl---- 300 (361)
T PRK06690 235 LGYKPVLRFVRSAVVGVDPN--L---PGTGPIFAVNKLLNEMNMKVEDIDYFEINEAFASK----VVACAK-ELQI---- 300 (361)
T ss_pred cCCCceEEEEEEEEeccCcc--c---chhHHHHHHHHHHHHcCCCHHHcCEeeecchhHHH----HHHHHH-hcCC----
Confidence 99999889999886532111 1 13467789999999999999999999999555422 222111 1110
Q ss_pred hcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccc
Q psy11395 343 KKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN 422 (831)
Q Consensus 343 ~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~ 422 (831)
...++.+.+..-.+||+.|++|+++++.++.+|+.+
T Consensus 301 ------~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~~-------------------------------------- 336 (361)
T PRK06690 301 ------PYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKRE-------------------------------------- 336 (361)
T ss_pred ------CchhcccCCcHHhccCchhhhHHHHHHHHHHHHHHh--------------------------------------
Confidence 002334433334459999999999999999998752
Q ss_pred cccEEEEcccCCCCceeEEEEcc
Q psy11395 423 KLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 423 ~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++..++...-||.-..+|||+
T Consensus 337 ~~~~g~~~~c~~gG~g~a~~~e~ 359 (361)
T PRK06690 337 DMKYGIATLGIGGGIGLALLFEK 359 (361)
T ss_pred CCCEEEEEEcccCcceeEEEEEe
Confidence 23567777788889899999985
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=178.40 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC---C
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG---P 174 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G---p 174 (831)
...|+.+++.+||+++|+++++++ .+++++...++ .....+.+|...+|+++ |
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~dId----~li~~~~~~~~--------------------~~p~~a~~v~~~lgl~~~~~~ 107 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTLDDID----CIICASGTIQQ--------------------AIPCTASLIQEQLGLQHSGIP 107 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCCCC--------------------CCccHHHHHHHHhCCCCCCce
Confidence 467999999999999999998887 47777654332 11245778999999975 8
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEe
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL 254 (831)
++.|+.+|+|++.||+.|.++|++|.++.+||+++|.+.... .++...++++.||||+|+||
T Consensus 108 ~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~~------------------~~~~~~~~~lfGDGAaA~ll 169 (329)
T PRK07204 108 CFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGL------------------NWGQNESCILFGDGAAAVVI 169 (329)
T ss_pred EEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCCC------------------CcccCcceEEEecccEEEEE
Confidence 999999999999999999999999999999999999742210 12223457889999999999
Q ss_pred cchhhhhhCCCceE-------------EEEeeeeeccCCCCCC-------CCCCCH--------HHHHHHHHHHHHHcCC
Q psy11395 255 KPLSVALNDHDNIY-------------AIIKGSAITHNGQSNG-------LTAPNP--------IQQSYLLQKAWNESNI 306 (831)
Q Consensus 255 ~~~~~A~~~g~~i~-------------a~I~g~~~~~dg~~~~-------~~~p~~--------~~~~~~i~~al~~Agl 306 (831)
++.+.. .++. ..+.+.+...+..... ....++ ....++++++|+++|+
T Consensus 170 ~~~~~~----~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl 245 (329)
T PRK07204 170 TKGDHS----SRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFIDKLLMDAGY 245 (329)
T ss_pred EEcCCC----CcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 875431 2222 2223222211100000 000111 1245889999999999
Q ss_pred CCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCcc
Q psy11395 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~i 386 (831)
+++||+++-.|..+.++ .+++.+.++-.. .+ +-.....+||+.+|+=...|... ++.+.+
T Consensus 246 ~~~did~~~~H~~~~~~-----~~~i~~~l~l~~----------e~--~~~~~~~~Gn~~sas~~~~L~~~---~~~g~~ 305 (329)
T PRK07204 246 TLADIDLIVPHQASGPA-----MRLIRKKLGVDE----------ER--FVTIFEDHGNMIAASIPVALFEA---IKQKKV 305 (329)
T ss_pred CHHHCCEEEeCCCCHHH-----HHHHHHHcCCCH----------HH--hhhhHhhhCcHHHHHHHHHHHHH---HHcCCC
Confidence 99999999999888764 345566664311 11 23566788999887765555543 333321
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 387 pp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
. +..++++.+||.|-+-+.++|+
T Consensus 306 ~-----------------------------------~Gd~vll~~~G~G~s~~~~ll~ 328 (329)
T PRK07204 306 Q-----------------------------------RGNKILLLGTSAGLSIGGILLE 328 (329)
T ss_pred C-----------------------------------CCCEEEEEEEchhhhheeeEEe
Confidence 1 2246888899999999999886
|
|
| >KOG1390|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=175.78 Aligned_cols=241 Identities=17% Similarity=0.155 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCC
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGP 174 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gp 174 (831)
+.++|...+...|||++++++++++. ||+|.- ...+.....+.+.+..-|| .-|
T Consensus 29 ~A~~Lgsvaikaalera~v~~~~v~e----Vi~GnV--------------------l~AnlGQapaRQaalgAGlp~sv~ 84 (396)
T KOG1390|consen 29 TATELGSVAIKAALERAVVPPSDVAE----VIFGNV--------------------LSANLGQAPARQAALGAGLPYSVP 84 (396)
T ss_pred chhhHHHHHHHHHHHhcCCCHHHhhh----hhhccc--------------------cccccCcchHHHHHhhcCCCccee
Confidence 35678899999999999999887764 555531 1222334567777777776 559
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCC----------CCCC--------------
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM----------LSRD-------------- 230 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~----------ls~~-------------- 230 (831)
+.||+--|+|+|.|+.+|+|.|+.|..|++++||.|.|.... ++...+.+. +..|
T Consensus 85 ~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP-~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y~~~~MG~~ 163 (396)
T KOG1390|consen 85 ATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVP-YLYVARGGVKYGGVQLVDGIVKDGLTDAYDKCHMGIC 163 (396)
T ss_pred eEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCc-chhhhccCcCcCCeeeeechhhcchHHHhccCCcchh
Confidence 999999999999999999999999999999999999987655 222222110 0000
Q ss_pred --------------------------------------------------------C------------CCc-cccCCCC
Q psy11395 231 --------------------------------------------------------G------------ICK-TFDKNAD 241 (831)
Q Consensus 231 --------------------------------------------------------g------------~~~-~Fd~~a~ 241 (831)
. ..+ .|- ...
T Consensus 164 aE~~a~~~~ItRe~QD~yAI~Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~k~~~~~~~~~l~~vF~-~~g 242 (396)
T KOG1390|consen 164 AENTAKKYQITREEQDAYAIESYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPKKGSNIEKLSKLRPVFK-EDG 242 (396)
T ss_pred HhhhHHHhCCcHhhhhhHHHHhHHHHHHHHhcCCCCCceeeEEEecCCCcEEeccchhhhcccchhhhccccceee-cCC
Confidence 0 011 121 122
Q ss_pred cc-------eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceE
Q psy11395 242 GY-------VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314 (831)
Q Consensus 242 G~-------v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~i 314 (831)
|+ .+.||++++||.+.+.+.+.|.+++|+|++++-...-...--+ +...++.++|++||+..+||||+
T Consensus 243 gTVTaaNAS~lnDGAAAvvL~s~e~~~~~glkPLArIv~~~dAa~~P~df~i-----aP~laipk~lk~aG~~~sdVd~~ 317 (396)
T KOG1390|consen 243 GTVTAANASTLNDGAAAVVLMSGEAAKELGLKPLARIVAWGDAATEPIDFTI-----APALAIPKALKKAGLEQSDVDYW 317 (396)
T ss_pred CeeccccccccCccceeeEEechhhHhHcCCchHHHHhhhhhhccChhhccc-----chHHHHHHHHHHcCcchhhhhHH
Confidence 22 3689999999999999999999999999999754221111112 33568999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 315 e~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
|.+ |+.++..+-.-....- ....+.+..---.||||+|+||+.-++..+..|+.
T Consensus 318 EiN----------EAFs~v~lA~iK~Lgl-----dP~kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 318 EIN----------EAFSVVVLANIKKLGL-----DPSKVNVHGGAVALGHPLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred hhh----------hhhhHHHHHHHHHhCC-----CHhhccCCCceeecCCCcCCcchhHHHHHHHHHHh
Confidence 965 4333221110000000 00223333333347999999999999999999987
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-16 Score=172.77 Aligned_cols=248 Identities=15% Similarity=0.141 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..|+.+++++||+|||+++++++ +++++.. .. .. ...++..+|+++ |..
T Consensus 25 ~~L~~eA~~~Al~DAgl~~~dID----~~~~~~~--~~--------------------~~---~~~l~~~lGl~~~~~~~ 75 (386)
T PRK07855 25 LRLACEAVLAALDDAGLAPSDVD----GLVTFTM--DT--------------------NP---EIAVARALGIGELKFFS 75 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEecC--cc--------------------cc---HHHHHHHCCCCCCccee
Confidence 46889999999999999999998 5665321 00 00 124888999977 446
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEecc--ccccccc------------h---hHHH-HHcCCCCCC--------
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGI--NLILHPS------------N---TIAY-YKAGMLSRD-------- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv--~~~~~p~------------~---~~~~-~~~g~ls~~-------- 230 (831)
.|.++|+|+..+|+.|++.|++|.||++||.|+ +...... . ...+ ...|+..+.
T Consensus 76 ~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~ 155 (386)
T PRK07855 76 RIHYGGGAACATVQQAAMAVATGVADVVVCYRAFNERSGMRFGQGQTGLAENPTSTGVDYGWSYPHGLLTPAAWVAMLAR 155 (386)
T ss_pred eecCCcHHHHHHHHHHHHHHHCCCCCEEEEEeecccccccccccccccccccccccccchhhhhhcCCCChHHHHHHHHH
Confidence 789999999999999999999999999999987 2210000 0 0000 011211100
Q ss_pred -----------------------CCCccccCC----------------------CCcceecCceEEEEecchhhhhhCCC
Q psy11395 231 -----------------------GICKTFDKN----------------------ADGYVRGEGAVMLMLKPLSVALNDHD 265 (831)
Q Consensus 231 -----------------------g~~~~Fd~~----------------------a~G~v~gEGaaavvL~~~~~A~~~g~ 265 (831)
+.-+|+... -|-..++||++++||.+.+.|++.++
T Consensus 156 ~ym~~~G~t~e~lA~vavk~~~~A~~NP~A~~~~~~~t~e~vl~s~~Ia~Pl~~~d~~~~sDGAaAvvl~see~A~~l~~ 235 (386)
T PRK07855 156 RYMHEYGATSEDFGRVAVADRKHAATNPKAWFYGRPITLEDHQNSRWIAEPLRLLDCCQESDGAVALVVTSAERARDLKQ 235 (386)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhcChHhhhcCCCCCHHHHhcCCcccCCchhhhcCCcCCceEEEEEecHHHHhhCCC
Confidence 111221111 12234699999999999999988876
Q ss_pred ceEEEEeeeeeccCCCCCCC-----CCC-CHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhh
Q psy11395 266 NIYAIIKGSAITHNGQSNGL-----TAP-NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHS 338 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~-----~~p-~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~ 338 (831)
++ ..|+|++..++.....+ ..+ .......++++||++|||+++|||++|.|.+.|. .|+..+... |++
T Consensus 236 ~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~D~Ft~----~~l~~~E~lG~~~ 310 (386)
T PRK07855 236 RP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILYDHFTP----FVLMQLEELGFCG 310 (386)
T ss_pred CC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEeccCCcH----HHHHHHHHcCCCC
Confidence 65 48999987654331111 011 1233457999999999999999999999999985 355444433 332
Q ss_pred hhhhhc----ccccccccccc---cccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 339 IITYKK----NIKNFYEKCGL---GSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 339 ~~~~~~----~~~~~~~~~~v---gs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
...... ........+|| |..+++ ||+. |+.+++.+++||+.+
T Consensus 311 ~Ge~~~~v~~G~~~~~G~lPvN~sGGll~~-gh~~---G~~~i~E~~~QLrG~ 359 (386)
T PRK07855 311 RGEAKDFIADGALELGGRLPINTHGGQLGE-AYIH---GMNGIAEAVRQLRGT 359 (386)
T ss_pred CCcHHHHHHCCCcccCCcccccCCCccccc-Cchh---hHHHHHHHHHHHhCC
Confidence 211110 01111245777 777776 8976 999999999999985
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=170.03 Aligned_cols=290 Identities=18% Similarity=0.269 Sum_probs=188.0
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE 93 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~ 93 (831)
.|.|.++|..+|.-..+.+++++.+.... +|-. ...+ +....+ ..+
T Consensus 3 ~v~I~ai~~~lP~~~~~~~~~~~~~~~~~---------~~i~--------~~~g------------i~~r~~-~~~---- 48 (319)
T PRK09352 3 YAKILGTGSYLPERVVTNDDLEKMVDTSD---------EWIV--------TRTG------------IKERRI-AAP---- 48 (319)
T ss_pred ceEEEEEEEECCCeEEcHHHHHHHcCCCH---------HHhh--------hhcC------------eEEEEe-CCC----
Confidence 58899999999987667788887642111 1100 0000 000000 000
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G 173 (831)
-.....|+.+++.+||+++|+++++++ .|++|++..++. ....+.+|+..+|+.+
T Consensus 49 -~~~~~~la~~A~~~al~~agl~~~~id----~vi~~~~~~~~~--------------------~~~~~~~i~~~lG~~~ 103 (319)
T PRK09352 49 -DETTSDLATEAAKKALEAAGIDPEDID----LIIVATTTPDYA--------------------FPSTACLVQARLGAKN 103 (319)
T ss_pred -CCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CchHHHHHHHHhCCCC
Confidence 023578999999999999999998887 588877543220 1124678999999988
Q ss_pred -CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEE
Q psy11395 174 -PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252 (831)
Q Consensus 174 -ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaav 252 (831)
|.++|.++|+|++.||..|++.|++|++|.+||+|+|.+.... . ++....++++||||+++
T Consensus 104 ~~~~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~-----------~-------~~~~~~~~~~gDGaaA~ 165 (319)
T PRK09352 104 AAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIV-----------D-------WTDRSTCVLFGDGAGAV 165 (319)
T ss_pred CcEeeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc-----------C-------cccCCceEEEeccceEE
Confidence 9999999999999999999999999999999999999853211 0 11223467899999999
Q ss_pred EecchhhhhhCCCceEEEEeeeeeccCCCCC-CCC-------CC--------C--------HHHHHHHHHHHHHHcCCCC
Q psy11395 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQSN-GLT-------AP--------N--------PIQQSYLLQKAWNESNIDV 308 (831)
Q Consensus 253 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-~~~-------~p--------~--------~~~~~~~i~~al~~Agl~~ 308 (831)
||++.... .+ .++...++|... .+. .| . .....++++++|+++|+++
T Consensus 166 ll~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~~ 236 (319)
T PRK09352 166 VLGASEEP-----GI----LSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTP 236 (319)
T ss_pred EEEEcCCC-----Ce----EEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99975432 12 222222222110 000 00 0 1234568999999999999
Q ss_pred CCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 309 RSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 309 ~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
+||+|+..|..+...- ..+.+.++-.. .++ -.....+||+.+|+=+..|..++ +.+.+
T Consensus 237 ~di~~~~~h~~~~~~~-----~~~~~~lg~~~----------~~~--~~~~~~~Gn~~~a~~~~~L~~~~---~~g~~-- 294 (319)
T PRK09352 237 EDIDWLVPHQANLRII-----DATAKKLGLPM----------EKV--VVTVDKYGNTSAASIPLALDEAV---RDGRI-- 294 (319)
T ss_pred HHCCEEEECCCCHHHH-----HHHHHHhCCCH----------HHh--hhhHHhhCCHHHHHHHHHHHHHH---HcCCC--
Confidence 9999999996554332 22333333210 111 12335789999998777776554 33221
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
....+.++-|||.|-+-..++|+
T Consensus 295 ---------------------------------~~Gd~vll~s~G~G~~~~~~ll~ 317 (319)
T PRK09352 295 ---------------------------------KRGDLVLLEGFGGGLTWGAALVR 317 (319)
T ss_pred ---------------------------------CCCCEEEEEEEchhheeEEEEEE
Confidence 11245788899999988888886
|
|
| >KOG1406|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-17 Score=161.92 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cccccc
Q psy11395 101 ILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSLLID 179 (831)
Q Consensus 101 l~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~tv~ 179 (831)
++-|+...||.|+|+..++++..-+|.++|-+.- ..|.-|.+|++| |.+.|+
T Consensus 32 ~a~ea~tkal~da~ikys~vqqa~vgyvfgdstc---------------------------gqraiyevgmtgipi~nvn 84 (408)
T KOG1406|consen 32 FAKEAITKALQDAGIKYSEVQQAVVGYVFGDSTC---------------------------GQRAIYEVGMTGIPIYNVN 84 (408)
T ss_pred HHHHHHHHHHHhcCCCHHHHHhhhheeeecCCcc---------------------------chHHHHhccccCcceeecc
Confidence 4567899999999999999988888888876532 235667899999 999999
Q ss_pred cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH-HHHH-------------cCCCCC----------------
Q psy11395 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI-AYYK-------------AGMLSR---------------- 229 (831)
Q Consensus 180 taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~-~~~~-------------~g~ls~---------------- 229 (831)
+.|+++..||.+|.+.|++|..|++|+.|.|.|..-.... .+.+ .--|++
T Consensus 85 nncatgssalflakqiiesgn~dcvlalgfekm~~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaqmfgnagkehm 164 (408)
T KOG1406|consen 85 NNCATGSSALFLAKQIIESGNSDCVLALGFEKMERGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQMFGNAGKEHM 164 (408)
T ss_pred CccccCchHHHHHHHHHhcCCcceEEeechhhhCCcccchhhhhccCcchhhHHHHHhhccCCCCcchHHHhhhhHHHHH
Confidence 9999999999999999999999999999998753211000 0000 000000
Q ss_pred -------------------CCCCccccCCCCcce---------------------ecCceEEEEecchhhhhhCCCceEE
Q psy11395 230 -------------------DGICKTFDKNADGYV---------------------RGEGAVMLMLKPLSVALNDHDNIYA 269 (831)
Q Consensus 230 -------------------~g~~~~Fd~~a~G~v---------------------~gEGaaavvL~~~~~A~~~g~~i~a 269 (831)
.....|+++-.|-|. .+||+++.||.++...++.|..-.|
T Consensus 165 ekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseafv~k~gl~~qa 244 (408)
T KOG1406|consen 165 EKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAFVRKHGLEKQA 244 (408)
T ss_pred HHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHHHHhcccHHHH
Confidence 012234443333332 5899999999999988888866555
Q ss_pred -EEeeeeeccCCCCCC-----CCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhh
Q psy11395 270 -IIKGSAITHNGQSNG-----LTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYK 343 (831)
Q Consensus 270 -~I~g~~~~~dg~~~~-----~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~ 343 (831)
+|.|.-+.+|-.+.- +-.-..+..+.+.++.+++.|++|.||++||.|.+..+ ++.+-.+||.-.- .+...
T Consensus 245 veivg~em~td~ps~faeks~ikm~gfdm~~~aa~~l~aksgltpndvqvielhdcfs~-nelityealglcp--egqg~ 321 (408)
T KOG1406|consen 245 VEIVGMEMATDPPSTFAEKSLIKMAGFDMTRLAAKRLFAKSGLTPNDVQVIELHDCFSA-NELITYEALGLCP--EGQGG 321 (408)
T ss_pred HHHHHHHhccCCchhhhhhhhhhhhcchHHHHHHHHHHHHcCCCcccceEEEeecccch-hhhhhHHHhcCCC--CCCCc
Confidence 477777776654321 11112356678899999999999999999999999875 4555555554221 11100
Q ss_pred c----ccccccccccccccCCCC--cccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcc
Q psy11395 344 K----NIKNFYEKCGLGSVKTNL--GHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVK 417 (831)
Q Consensus 344 ~----~~~~~~~~~~vgs~K~~i--GH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~ 417 (831)
. ...-...+..|....+.| ||++||.|+++.+..+.+|+...--.+
T Consensus 322 ~~vdrgdntyggkwvinpsggliskghplgatglaqcaelcwqlrg~agkrq---------------------------- 373 (408)
T KOG1406|consen 322 EFVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGLAGKRQ---------------------------- 373 (408)
T ss_pred eeeecCCCccCceEEECCCCccccCCCcCccchHHHHHHHHHHHhhhhcccc----------------------------
Confidence 0 000011223343333333 999999999999999999986321110
Q ss_pred ccccccccEEEEcccCCCCceeEEEE
Q psy11395 418 PKYENKLRIAGVSSFGSGGTNAHVVL 443 (831)
Q Consensus 418 ~~~~~~~r~a~v~sfG~gG~nahvil 443 (831)
....+.++-++.|+||.....+.
T Consensus 374 ---vpnakvalqhnlgiggavvv~ly 396 (408)
T KOG1406|consen 374 ---VPNAKVALQHNLGIGGAVVVALY 396 (408)
T ss_pred ---CCCchhhhhhccCcCceeEEEEe
Confidence 01235677888899997665554
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=159.90 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=154.1
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE 93 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~ 93 (831)
.+.|+|+|...|.-..+.+++-..+..-..+|.... ||.++...
T Consensus 3 ~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rt------------------------------------Gir~R~~a 46 (323)
T COG0332 3 NAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRT------------------------------------GIRERRIA 46 (323)
T ss_pred cceEEEEEeecCCcccChHHHHhccCCCcceeeeec------------------------------------CCceeeec
Confidence 478999999999876676776533332222222111 12111111
Q ss_pred c-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC
Q psy11395 94 S-MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT 172 (831)
Q Consensus 94 ~-mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 172 (831)
. -.-...|+.+|+++||++||+++++++ -|++.+++.++. .+..|.+|...||++
T Consensus 47 ~~~e~~s~la~~Aa~~AL~~Agi~~~dID----lII~aT~tpd~~--------------------~Ps~A~~vq~~LG~~ 102 (323)
T COG0332 47 ADDETTSDLAVEAARKALEDAGISPDDID----LIIVATSTPDHL--------------------FPSTACLVQARLGLG 102 (323)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCcccC--------------------CChHHHHHHHHhCCC
Confidence 1 123567999999999999999999998 688888877662 345789999999998
Q ss_pred C-CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 173 G-PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 173 G-ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+ +++-+..+||+.++||..|.++|++|.++.+||.|.|.+.. .+ -|..+...+.+||||||
T Consensus 103 ~~~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~S~-----------~l-------d~~dR~t~vlFgDGAgA 164 (323)
T COG0332 103 GAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSR-----------IL-------DWTDRDTCVLFGDGAGA 164 (323)
T ss_pred CcceeechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHhhc-----------cC-------CHhhccceEEEcCCceE
Confidence 8 99999999999999999999999999999999999998521 11 12233466789999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeeccCCCCC-------------------CCCCCC--------HHHHHHHHHHHHHHc
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQSN-------------------GLTAPN--------PIQQSYLLQKAWNES 304 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-------------------~~~~p~--------~~~~~~~i~~al~~A 304 (831)
|||++.+ .+. . |..+...+||... ....-. ...+.++++++|+++
T Consensus 165 vvl~~~~--~~~--~----i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~~~L~~~ 236 (323)
T COG0332 165 VVLEATE--DDN--G----ILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKA 236 (323)
T ss_pred EEEecCC--CCc--C----eeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999875 111 1 2222222222110 000111 245678899999999
Q ss_pred CCCCCCcceEEec
Q psy11395 305 NIDVRSLGYIECH 317 (831)
Q Consensus 305 gl~~~dId~ie~H 317 (831)
|++++||||+..|
T Consensus 237 ~l~~~dId~~vpH 249 (323)
T COG0332 237 GLTPEDIDWFVPH 249 (323)
T ss_pred CCCHHHCCEEccc
Confidence 9999999999999
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-15 Score=169.90 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHcCCC--CCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cc
Q psy11395 99 QRILLELSWKTIEDAGYD--SSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~--~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps 175 (831)
..|+.+++++||+|||++ +++++ +++++.... +. ....+..++..+|+.. +.
T Consensus 28 ~~L~~eA~~~Al~DAGl~~~~~dID----~v~v~~~~~-~~--------------------~~~~~~~la~~lGl~p~~~ 82 (498)
T PRK08257 28 VDLMAAAARAAAADAGADAVLEAID----SVAVVNQLS-WR--------------------YRDPPGLLAERLGADPART 82 (498)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHCC----EEEEecccc-cc--------------------ccCHHHHHHHHcCCCCcce
Confidence 568999999999999998 88888 577664321 10 0123467889999964 55
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-----------------------------HHHHHcCC
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-----------------------------IAYYKAGM 226 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-----------------------------~~~~~~g~ 226 (831)
....++|+|+..+|+.|++.|++|+||++||+|++.+...... ......|+
T Consensus 83 ~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~G~ 162 (498)
T PRK08257 83 VYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQSTATKLRKAGEKLDWTPQDEGPLADRGGDPRPMASPAELRHGL 162 (498)
T ss_pred eEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccccchhccccccccccccccccccccccccccccchhhhhcCC
Confidence 5566788899999999999999999999999999975321000 00001121
Q ss_pred CCCC-----------------------------------C-------CCcccc-------------------CCCCccee
Q psy11395 227 LSRD-----------------------------------G-------ICKTFD-------------------KNADGYVR 245 (831)
Q Consensus 227 ls~~-----------------------------------g-------~~~~Fd-------------------~~a~G~v~ 245 (831)
..+. . ..++++ .--+-...
T Consensus 163 ~~p~~~yal~a~ay~~~~G~t~e~~~a~~a~l~~~~~~~Aa~NP~A~~r~~~t~eevl~~~~~~rmIa~Pl~~ldca~~~ 242 (498)
T PRK08257 163 DRPVYVYPLFENALRAALGRSPEEHRAEMGELWAPFSAVAAKNPHAWIPRERSAEEIVTPTPDNRMIAWPYTKLMNANDM 242 (498)
T ss_pred CCcchHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhhCHHHhhCCCCCHHHHhcccCCCCeeeCCccHhhcCCCC
Confidence 1110 0 001111 10011125
Q ss_pred cCceEEEEecchhhhhhCCC--ceEEEEeeeeeccCCCCCCCCCC---CHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 246 GEGAVMLMLKPLSVALNDHD--NIYAIIKGSAITHNGQSNGLTAP---NPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 246 gEGaaavvL~~~~~A~~~g~--~i~a~I~g~~~~~dg~~~~~~~p---~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+||++++||.+.+.|++.+. .-...|.|++..++..... ..+ ...+...+.++||++|||+++|||++|.|.+.
T Consensus 243 ~DGaaAvil~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~-~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~~elydcF 321 (498)
T PRK08257 243 VDQGAAVLLTSVAKARRLGVPEDRWVYLHGGADAHDPYDIL-ERPDLHRSPAIRAAGRRALALAGLGIDDIDAFDLYSCF 321 (498)
T ss_pred cccceEEEEeeHHHHHhcCCCCCceEEEEEEEEeeCccccc-cccccccChHHHHHHHHHHHHhCCCHHHCCEEEeccCC
Confidence 89999999999999998872 2356688988877643211 111 12345578999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHH-hhhhhhhhcccccccccccc-cccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 321 TKLGDPIEIQGLKNA-FHSIITYKKNIKNFYEKCGL-GSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 321 T~~gD~~E~~al~~~-f~~~~~~~~~~~~~~~~~~v-gs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
+. .|..++... |+... ..++.+ |..+ ..||+.+++|+.+++.++.+|+.
T Consensus 322 ~~----~~~~~~E~LGl~~~g---------~~pvN~sGGl~-s~G~P~~a~g~~~i~E~v~QLRg 372 (498)
T PRK08257 322 PS----AVQVAARELGLDLDD---------PRPLTVTGGLP-FFGGPGNNYVTHAIAEMVERLRA 372 (498)
T ss_pred HH----HHHHHHHHcCcCCCC---------CCCcCCCcChh-hcCCchhhHHHHHHHHHHHHHhh
Confidence 84 355555544 43211 012333 3333 35999999999999999999986
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-15 Score=161.21 Aligned_cols=246 Identities=15% Similarity=0.225 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|+.+++.+||+++|+++++++ .|++++...++. ....+.+|+..||++ .+.+
T Consensus 53 ~~~la~~A~~~al~~ag~~~~~Id----~li~~~~~~~~~--------------------~~~~a~~l~~~lg~~~~~~~ 108 (325)
T PRK12879 53 TSDLAIKAAERALARAGLDAEDID----LIIVATTTPDYL--------------------FPSTASQVQARLGIPNAAAF 108 (325)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CChHHHHHHHHhCCCCCcEE
Confidence 567899999999999999998887 577776543321 123567899999997 4889
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||+.|+++|++|.++.+||+++|.+.... .++.....+++||||+++||++
T Consensus 109 ~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~~------------------~~~~~~~~~~~GDgAaA~ll~~ 170 (325)
T PRK12879 109 DINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVT------------------DYTDRTTCILFGDGAGAVVLEA 170 (325)
T ss_pred EECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC------------------CccccCceEEEeecceEEEEEe
Confidence 9999999999999999999999999999999999742210 1111234578999999999987
Q ss_pred hhhhhhCCCceEEEE-------------eeeeeccCC---CCCCCCCCC--------HHHHHHHHHHHHHHcCCCCCCcc
Q psy11395 257 LSVALNDHDNIYAII-------------KGSAITHNG---QSNGLTAPN--------PIQQSYLLQKAWNESNIDVRSLG 312 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I-------------~g~~~~~dg---~~~~~~~p~--------~~~~~~~i~~al~~Agl~~~dId 312 (831)
.+. +..+.... .+.+...+. ........+ .....++++++|+++|++++||+
T Consensus 171 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~did 246 (325)
T PRK12879 171 TEN----EPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVLEKAGLTKDDID 246 (325)
T ss_pred cCC----CCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 543 11222111 111110000 000000011 12235688999999999999999
Q ss_pred eEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCC
Q psy11395 313 YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNF 392 (831)
Q Consensus 313 ~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~ 392 (831)
|+-.|-.+.++ .+.+.+.++-.. .++.. ....+||+.+|+=...|..++ +.+.+.
T Consensus 247 ~~~~h~~~~~~-----~~~~~~~lg~~~----------~~~~~--~~~~~Gn~~sas~~~~L~~~~---~~g~~~----- 301 (325)
T PRK12879 247 WVIPHQANLRI-----IESLCEKLGIPM----------EKTLV--SVEYYGNTSAATIPLALDLAL---EQGKIK----- 301 (325)
T ss_pred EEEECCCCHHH-----HHHHHHHcCCCH----------HHhhh--hHhhhCchHHHHHHHHHHHHH---HcCCCC-----
Confidence 99999655332 334555554211 11222 346789999998777775543 333221
Q ss_pred CCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 393 YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 393 ~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..+.++-+||.|-+-..++++
T Consensus 302 ------------------------------~Gd~vll~~~G~G~~~~~~l~~ 323 (325)
T PRK12879 302 ------------------------------PGDTLLLYGFGAGLTWAALLVK 323 (325)
T ss_pred ------------------------------CCCEEEEEEEchhhhhEEEEEE
Confidence 1235888899999998888886
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-15 Score=161.75 Aligned_cols=239 Identities=17% Similarity=0.053 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-C-Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-G-PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-ps~ 176 (831)
..|+.+++++||+|||+++++++ +++.+.+ ++. ... .... ..++..+|+. + |.+
T Consensus 25 ~el~~eA~~~Al~DAgl~~~dID----~~~~~~~--~~~-----------~~~----~~~~---~~~~~~~G~~~~~~~~ 80 (352)
T PRK07937 25 VEMLMPCFAELYAELGITKSDIG----FWCSGSS--DYL-----------AGR----AFSF---ISAIDSIGAVPPINES 80 (352)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEcc--ccc-----------ccc----ccch---hhHHhhccCCCCCceE
Confidence 56899999999999999999998 4543321 110 000 0000 1244556763 3 444
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-----------------cch-----hHH------HHHcCCCC
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-----------------PSN-----TIA------YYKAGMLS 228 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-----------------p~~-----~~~------~~~~g~ls 228 (831)
.+. ++|..||+.|+++|++|.||++||.|++.+.. |.. ++. +.+.|...
T Consensus 81 ~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~ym~~yG~t~ 157 (352)
T PRK07937 81 HVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARAGLDAGKWTE 157 (352)
T ss_pred Eec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHHHHHHhCCCH
Confidence 454 46888999999999999999999999886421 000 000 00111100
Q ss_pred C-----------CCCCccccCC-------------------CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeecc
Q psy11395 229 R-----------DGICKTFDKN-------------------ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH 278 (831)
Q Consensus 229 ~-----------~g~~~~Fd~~-------------------a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~ 278 (831)
. .+.-+|+..- -|-..++||++++||.+.+.|++.++++ +.|+|++..+
T Consensus 158 e~lA~vavk~r~nA~~NP~A~~rit~edvl~s~~ia~PL~l~d~~~~~DGAaA~vl~s~~~A~~l~~~p-v~I~g~~~~~ 236 (352)
T PRK07937 158 EQMAEVAARSRADARRNPSAEPSISVDELLARPYFADPLRRHDIAPITDGAAAVVLAAGDRARELRERP-AWITGIEHRI 236 (352)
T ss_pred HHHHHHHHHHHHHHhhCchhhccCCHHHHhcCCcccCCchhhcCCCCCCcceEEEEecHHHHHHcCCCc-EEEEEEEEee
Confidence 0 0111221111 1222469999999999999999988777 8999998876
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH-cCCCCCCcceEEecCCCCCCCCHHHHHHHHHH-hhhhhhhhccccccccccccc
Q psy11395 279 NGQSNGLTAPNPIQQSYLLQKAWNE-SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA-FHSIITYKKNIKNFYEKCGLG 356 (831)
Q Consensus 279 dg~~~~~~~p~~~~~~~~i~~al~~-Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~-f~~~~~~~~~~~~~~~~~~vg 356 (831)
+..... ..+ .....++++++++ ||++|+|||++|.|...|.. |+..+... |+.. ..-.+-|
T Consensus 237 ~~~~~~--~~d-~~~~~~~~~a~~~aAgi~~~diD~~Ei~D~F~~~----~l~~~e~lGl~g~----------~pvN~~G 299 (352)
T PRK07937 237 ESPSLG--ARD-LTRSPSTALAAEAATGGDAGGVDVAELHAPFTHQ----ELILREALGLGDK----------TKVNPSG 299 (352)
T ss_pred CCcccc--ccc-cccHHHHHHHHHHhcCCCHHHCCEEEEeCCChHH----HHHHHHHcCCCCC----------CCcCCCc
Confidence 543311 111 1112344556666 59999999999999988843 44433322 2110 0112346
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 357 SVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 357 s~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
+.++ ||+.||+|+..++.+++||+.+
T Consensus 300 G~l~--ghp~gatG~~~~~e~~~QL~g~ 325 (352)
T PRK07937 300 GALA--ANPMFAAGLERIGEAARHIWDG 325 (352)
T ss_pred cchh--cCchhHHHHHHHHHHHHHHhcc
Confidence 6665 9999999999999999999874
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-15 Score=160.53 Aligned_cols=242 Identities=17% Similarity=0.252 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+++|+++++++ .+++++...++. ....+.+++..+|+++ |.+
T Consensus 51 ~~~la~~A~~~al~~agl~~~~Id----~~i~~~~~~~~~--------------------~~~~a~~l~~~lGl~~~~~~ 106 (318)
T TIGR00747 51 SSTMGFEAAKRAIENAGISKDDID----LIIVATTTPDHA--------------------FPSAACMVQAYLGIKGIPAF 106 (318)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCCCCC--------------------CChHHHHHHHHhCCCCCcEe
Confidence 467899999999999999998887 577776543320 1124678999999998 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||+.|+++|++|.++.+||+|+|.+.... ++.+ ....+++|||++++||.+
T Consensus 107 ~v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~~-----------------~~~~-~~~~~~~GDGAaA~lL~~ 168 (318)
T TIGR00747 107 DLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTL-----------------DWTD-RGTCVLFGDGAGAVVLGE 168 (318)
T ss_pred ehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC-----------------CcCC-CCeEEEEecceeEEEEee
Confidence 9999999999999999999999999999999999853321 1111 223567999999999987
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCCC-CCCCC----------------C-------HHHHHHHHHHHHHHcCCCCCCcc
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQSN-GLTAP----------------N-------PIQQSYLLQKAWNESNIDVRSLG 312 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~~-~~~~p----------------~-------~~~~~~~i~~al~~Agl~~~dId 312 (831)
.+... .+ .++...+++... ....| . .....++++++|+++|++++||+
T Consensus 169 ~~~~~----~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~di~ 240 (318)
T TIGR00747 169 SEDPG----GI----ISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPEDID 240 (318)
T ss_pred cCCCC----cE----EEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 54321 12 222222222110 00000 0 12345678999999999999999
Q ss_pred eEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCC
Q psy11395 313 YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNF 392 (831)
Q Consensus 313 ~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~ 392 (831)
|+..|..+.++-+ .+.+.++-.. .++. ... ..+||+.+|+=...|..++ +++.+.
T Consensus 241 ~~~~h~~~~~~~~-----~~~~~lgi~~----------~k~~-~~~-~~~Gn~~sas~~~~L~~~~---~~~~~~----- 295 (318)
T TIGR00747 241 WFVPHQANLRIIE-----ALAKRLELDM----------SQVV-KTV-HKYGNTSAASIPLALDELL---RTGRIK----- 295 (318)
T ss_pred EEEECCCCHHHHH-----HHHHHcCCCH----------HHee-ehH-hhhCCHHHHHHHHHHHHHH---HcCCCC-----
Confidence 9999977655432 2334443211 1111 122 3489999998777775543 332221
Q ss_pred CCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 393 YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 393 ~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
...+.++-+||.|.+-..++|+
T Consensus 296 ------------------------------~Gd~vll~~~G~G~t~~~~~l~ 317 (318)
T TIGR00747 296 ------------------------------PGDLLLLVAFGGGLTWGAALVR 317 (318)
T ss_pred ------------------------------CCCEEEEEEEehhheeeEEEEE
Confidence 1245788899999998888875
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=162.58 Aligned_cols=214 Identities=18% Similarity=0.232 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC-CCCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-TGPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl-~Gps~ 176 (831)
...|+.+++.+||+++|+++++++ .+++++...++. ....+.+|+..+|+ +.|.+
T Consensus 50 ~~~la~~A~~~al~~ag~~~~~Id----~li~~~~~~~~~--------------------~~~~~~~l~~~lg~~~~~~~ 105 (320)
T cd00830 50 TSDLAVEAAKKALEDAGIDADDID----LIIVATSTPDYL--------------------FPATACLVQARLGAKNAAAF 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCCCCcEe
Confidence 578999999999999999988887 577776543321 12357889999999 56899
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||.+|+++|++|.++.+||+++|.+.... .|+....++++||||+++||++
T Consensus 106 ~v~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~------------------~~~~~~~~~~~GDgAaA~ll~~ 167 (320)
T cd00830 106 DINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRIL------------------DWTDRSTAVLFGDGAGAVVLEA 167 (320)
T ss_pred eccccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc------------------CcccCCceEEEeccceEEEEEe
Confidence 9999999999999999999999999999999999853211 1344456889999999999987
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCCCC--------CC----------------CCC-----HHHHHHHHHHHHHHcCCC
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQSNG--------LT----------------APN-----PIQQSYLLQKAWNESNID 307 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~~~--------~~----------------~p~-----~~~~~~~i~~al~~Agl~ 307 (831)
.+. +..+. ++...+++.... .. ... .....++++++|+++|++
T Consensus 168 ~~~----~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~ 239 (320)
T cd00830 168 TEE----DPGIL----DSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLT 239 (320)
T ss_pred cCC----CCcEE----EEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHHHHcCCC
Confidence 543 22333 333322221100 00 000 123467899999999999
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHH
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~ 378 (831)
++||+++..|..+...-+. +.+.++-.. .++ -..-..+||+.+|+=...|..++
T Consensus 240 ~~di~~~~~h~~~~~~~~~-----~~~~lgl~~----------~~~--~~~~~~~Gn~~sas~~~~L~~~~ 293 (320)
T cd00830 240 PDDIDWFVPHQANLRIIEA-----VAKRLGLPE----------EKV--VVNLDRYGNTSAASIPLALDEAI 293 (320)
T ss_pred HHHCCEEEECCCCHHHHHH-----HHHHhCCCH----------HHh--hhhHHhhCcHHHHHHHHHHHHHH
Confidence 9999999999877654332 344443210 111 12334789999999887776664
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=161.69 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++.+||+++|+++++++ .+++++...+|. ....+..|...+|+++ |++
T Consensus 63 ~~~La~~A~~~aL~~agi~~~dId----~li~~s~~~~~~--------------------~p~~a~~v~~~Lgl~~~~~~ 118 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLGDIE----LLACGTSQPDQL--------------------MPGHASMVHGELGAPPIEVV 118 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEECCCCcC--------------------ChHHHHHHHhhCCCCCCcee
Confidence 568999999999999999998887 577877654331 1123467888899876 889
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHH-cCCCCC--CCCCccccCCCCcceecCceEEEE
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYK-AGMLSR--DGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~-~g~ls~--~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
.|+.+|+|++.||+.|++.|++|.++.+||+|+|.+........+.. .+.+.. +..+++|+.+..|+++||||+|+|
T Consensus 119 ~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~v 198 (378)
T PRK06816 119 SSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVL 198 (378)
T ss_pred eecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEE
Confidence 99999999999999999999999999999999998654433221211 122222 345789999999999999999999
Q ss_pred ecchhhhhhCCCc--eEEEEeeee-e------------ccCCCCCCCC--C-------------CCHH--------HHHH
Q psy11395 254 LKPLSVALNDHDN--IYAIIKGSA-I------------THNGQSNGLT--A-------------PNPI--------QQSY 295 (831)
Q Consensus 254 L~~~~~A~~~g~~--i~a~I~g~~-~------------~~dg~~~~~~--~-------------p~~~--------~~~~ 295 (831)
|++.+.. .|.. +.....+.. . ..++...... . .+.. ....
T Consensus 199 l~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (378)
T PRK06816 199 LENKPRP--DGLSLRIDWIDLRSYAGELPVCMYAGAEKNEDGSLKGWSDYPPEEAEAASALSLKQDVRLLNENIVVYTIK 276 (378)
T ss_pred EEecCCC--CCceEEEEEEeeecccccCccceecCCccCCCCCccCcccCCHHHHHhccCchHHhHHHHHHHHhHHHHHH
Confidence 9865432 1221 111110110 0 0000000000 0 0111 1267
Q ss_pred HHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHH
Q psy11395 296 LLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGIL 375 (831)
Q Consensus 296 ~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~li 375 (831)
+++++|+++|++++|||++-.|-....+.+ ++.+.+..... + . ...++. ..-..+||+.+||-...|.
T Consensus 277 ~i~~~L~~~gl~~~DId~~v~Hq~n~~~~~-----~v~~~l~~~~~--g-l--~~~k~~--~~~~~~GNt~sAsipi~L~ 344 (378)
T PRK06816 277 PLLELVDKRNLDPDDIDYFLPHYSSEYFRE-----KIVELLAKAGF--M-I--PEEKWF--TNLATVGNTGSASIYIMLD 344 (378)
T ss_pred HHHHHHHHcCCChhhCCEEeeCcccHHHHH-----HHHHHHHhccC--C-C--ChhheE--EeccccccccchHHHHHHH
Confidence 788899999999999999999966554333 23333210000 0 0 001111 2223679999999777776
Q ss_pred HH
Q psy11395 376 KI 377 (831)
Q Consensus 376 k~ 377 (831)
.+
T Consensus 345 ~a 346 (378)
T PRK06816 345 EL 346 (378)
T ss_pred HH
Confidence 55
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-14 Score=156.11 Aligned_cols=288 Identities=17% Similarity=0.142 Sum_probs=178.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
..|-|+|+|..+|.-..+.+++.+.+.+.... ...+..+.. ...++..-.+ .++.
T Consensus 4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~-~~~~~~~i~---------~~~Gi~~R~~------~~~~--------- 58 (338)
T PRK09258 4 SNVAILSLAYELAPVVVTSSEIEERLAPLYER-LRLPPGQLE---------ALTGIRERRW------WPEG--------- 58 (338)
T ss_pred cceEEEEEEecCCCccCcHHHHHHHhhhcccc-cCCChhHhh---------hhcCceeEec------CCCC---------
Confidence 34899999999998777778887765432110 011111100 0001000000 0000
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT 172 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 172 (831)
.....|+.+++++||+++|+++++++ .|++++...++. ....+.+|...+|++
T Consensus 59 ---~~~~~la~~Aa~~aL~~ag~~~~~Id----~li~~s~~~~~~--------------------~p~~a~~v~~~lgl~ 111 (338)
T PRK09258 59 ---TQLSDGAIAAGRKALAEAGIDPSDIG----LLINTSVCRDYL--------------------EPATACRVHHNLGLP 111 (338)
T ss_pred ---CCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CChHHHHHHHHcCCC
Confidence 01457999999999999999998887 577776543331 123678899999996
Q ss_pred C--CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 173 G--PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 173 G--ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
. +.+.|..+|+|++.||+.|.+.|++|.++.+||+++|...... ...+ ..+..++..+.+|+..-.++..||||+
T Consensus 112 ~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~s~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~GDGA~ 188 (338)
T PRK09258 112 KSCANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESAREIV-EATI--DRLLAPETTREDFAQSFATLTLGSGAA 188 (338)
T ss_pred CCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEecccchhc-cchh--hhhccCccchhhhhhccceEEecccce
Confidence 3 8899999999999999999999999999999999999853221 1111 122222233356777677888999999
Q ss_pred EEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCC-------CCCH--------HHHHHHHHHHHHHcCCCCCCcceEE
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLT-------APNP--------IQQSYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~-------~p~~--------~~~~~~i~~al~~Agl~~~dId~ie 315 (831)
|+||.+.... ..+.. +.+....+++...... ..+. ....++++++|+++|++++||||+-
T Consensus 189 A~ll~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~did~~i 263 (338)
T PRK09258 189 AAVLTRGSLH-PRGHR----LLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEGVELAVDTWEAFLAQLGWAVEQVDRVI 263 (338)
T ss_pred EEEEecCCCC-CCcce----eeeeeeecCCCcccccccCccceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEe
Confidence 9999875421 11222 3333322222211110 0111 2344688899999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHH
Q psy11395 316 CHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKI 377 (831)
Q Consensus 316 ~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~ 377 (831)
.|-.+.+.-+ .+.+.++-.. .+... ..+ .+||+.+|+=...|..+
T Consensus 264 ~H~~~~~~~~-----~~~~~lgl~~----------~k~~~-~~~-~~GN~~sas~~~~L~~~ 308 (338)
T PRK09258 264 CHQVGAAHTR-----AILKALGIDP----------EKVFT-TFP-TLGNMGPASLPITLAMA 308 (338)
T ss_pred cCCCCHHHHH-----HHHHHhCCCH----------HHcee-hHh-hhCCcHHhHHHHHHHHH
Confidence 9977765433 3444443211 11211 333 68999999766666554
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-13 Score=150.14 Aligned_cols=246 Identities=18% Similarity=0.247 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++.+||+++|+++++++ -|++++...++. . ..+..|...||+++ |++
T Consensus 96 ~~~La~~Aa~~aL~~agi~~~dId----~li~~s~~~~~~----------------~-----~~a~~v~~~LG~~~~~~~ 150 (379)
T PLN02326 96 LTSLAVEAAKKALEMAGVDPEDVD----LVLLCTSSPDDL----------------F-----GSAPQVQAALGCTNALAF 150 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCcc----------------C-----cHHHHHHHHhCCCCCcee
Confidence 568999999999999999988876 466665433321 0 13557889999976 788
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||++|.+.|++|.++.+||+|+|.+... + .|+...+.+++||||+|+||++
T Consensus 151 dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s~~-----------~-------~~~d~~~~~lfGDGAaAvlL~~ 212 (379)
T PLN02326 151 DLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALSRY-----------V-------DWTDRGTCILFGDGAGAVVLQA 212 (379)
T ss_pred eccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhcCC-----------C-------CccccCceEEEcceeEEEEEEE
Confidence 999999999999999999999999999999999974211 1 1222345568999999999987
Q ss_pred hhhhhhCCCceEEE-Eeeee-------eccCCC--------C----------CCC--CCCCH--------HHHHHHHHHH
Q psy11395 257 LSVALNDHDNIYAI-IKGSA-------ITHNGQ--------S----------NGL--TAPNP--------IQQSYLLQKA 300 (831)
Q Consensus 257 ~~~A~~~g~~i~a~-I~g~~-------~~~dg~--------~----------~~~--~~p~~--------~~~~~~i~~a 300 (831)
.+... ..+... +...+ ....|. . ... ...++ ....++++++
T Consensus 213 ~~~~~---~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~ 289 (379)
T PLN02326 213 CDDDE---DGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAVRCVPQVIESA 289 (379)
T ss_pred cCCCC---CceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHHHHHHHHHHHHHH
Confidence 53221 122211 11000 000000 0 000 00010 1234678899
Q ss_pred HHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHH
Q psy11395 301 WNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILC 380 (831)
Q Consensus 301 l~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~ 380 (831)
|+++|++++|||+|-.|-.+-.+- +.+.+.++-.. .++. ..+ ..+||+.+|+=...|..++
T Consensus 290 L~~~gl~~~dId~~v~Hq~n~~~~-----~~~~~~Lgl~~----------ek~~-~~l-~~~GNt~sAsi~~~L~~~~-- 350 (379)
T PLN02326 290 LQKAGLTAESIDWLLLHQANQRII-----DAVAQRLGIPP----------EKVI-SNL-ANYGNTSAASIPLALDEAV-- 350 (379)
T ss_pred HHHcCCCHHHCCEEEECCCCHHHH-----HHHHHHcCCCH----------HHee-ecH-hhcCcHHHHHHHHHHHHHH--
Confidence 999999999999999996654332 23444443210 1222 233 4789999998777665553
Q ss_pred HhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 381 LKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 381 L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+.+.+ ++..++++.+||.|-+-..++|+
T Consensus 351 -~~g~~-----------------------------------~~Gd~vll~~~G~G~t~~~~ll~ 378 (379)
T PLN02326 351 -RSGKV-----------------------------------KKGDVIATAGFGAGLTWGSAIVR 378 (379)
T ss_pred -HcCCC-----------------------------------CCCCEEEEEEEChhheeeEEEEE
Confidence 23221 11246888999999998888875
|
|
| >KOG1389|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=145.60 Aligned_cols=239 Identities=19% Similarity=0.262 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH-HHcCC--CCCccc
Q psy11395 101 ILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS-YFYNF--TGPSLL 177 (831)
Q Consensus 101 l~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris-~~lgl--~Gps~t 177 (831)
|+..+....+|+-+++|..+...-+|-+++.+.+ ....|++ ++-|+ +-|..+
T Consensus 64 Ll~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-------------------------a~e~R~a~~~ag~P~tvpv~t 118 (435)
T KOG1389|consen 64 LLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-------------------------ASECRMAAFYAGFPETVPVRT 118 (435)
T ss_pred HHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcc-------------------------hHHHHHHHHHcCCCcccchhh
Confidence 4555667788999999888775333333332221 2233444 44455 569999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc--hh--------HHHH-------HcCCCCC-----------
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS--NT--------IAYY-------KAGMLSR----------- 229 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~--~~--------~~~~-------~~g~ls~----------- 229 (831)
|+.-|||+|.|+..-...|++|.+|+-|.+|+|.|.+.. .+ ..+. -+|..|.
T Consensus 119 vNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnva~rfgvsR~ 198 (435)
T KOG1389|consen 119 VNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENVAERFGVSRE 198 (435)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhcccCCCCCccccChhhhhhhHHhhcccccccchHHHHHHhCCChh
Confidence 999999999999999999999999999999999976542 10 0010 1111110
Q ss_pred -----------------------------------------------CCCCcc-------------ccCCC-----Ccce
Q psy11395 230 -----------------------------------------------DGICKT-------------FDKNA-----DGYV 244 (831)
Q Consensus 230 -----------------------------------------------~g~~~~-------------Fd~~a-----~G~v 244 (831)
|.-.|| |-+|. +..-
T Consensus 199 eqD~~Av~S~kkAa~A~~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkdGttTagNsSQ 278 (435)
T KOG1389|consen 199 EQDEAAVDSHKKAAAATAKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKDGTTTAGNSSQ 278 (435)
T ss_pred hhhHHHHHHHHHHHHHhhcCcchhheeeeeeeccCCcCCccceeEecCCCCCCCcchhHHhhcchhhhcCCccccCchhh
Confidence 001111 32221 1122
Q ss_pred ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCC
Q psy11395 245 RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLG 324 (831)
Q Consensus 245 ~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~g 324 (831)
.+||+++|+|.+.+.|.+.|.+|+++.+.+....-... ++ +.+.+.+|.++|+.+|+..+|||++|.+
T Consensus 279 vSDGa~aVLLmkRs~A~qlgLPvlgvfr~f~~vGv~P~--iM---GiGPavAIp~alk~aGL~v~did~FEIN------- 346 (435)
T KOG1389|consen 279 VSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVGVPPA--IM---GIGPAVAIPKALKAAGLEVDDIDLFEIN------- 346 (435)
T ss_pred cccchhhhhhhhhhhHhhcCCceeEEeeeeeeecCCHH--Hc---CCCchhhhHHHHHHcCCcccccceeehh-------
Confidence 69999999999999999999999999999876422111 11 2234678999999999999999999976
Q ss_pred CHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 325 DPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 325 D~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
|+.|-.-+|+.....-. ..++.+..-.-.|||++||+|+..++..+..|+++
T Consensus 347 ---EAFAsQ~~yc~~KL~ld-----~ekVN~~GGaiAlGHPlGatGAR~VaTlL~emKrr 398 (435)
T KOG1389|consen 347 ---EAFASQALYCRNKLGLD-----PEKVNVNGGAIALGHPLGATGARCVATLLHEMKRR 398 (435)
T ss_pred ---HHHHHHHHHHHHHhCCC-----HHHcCCCCceeeccCCcCCccHhHHHHHHHHHHhh
Confidence 66666656653211100 01222323333479999999999999999999885
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=147.94 Aligned_cols=240 Identities=21% Similarity=0.275 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++++||+++|+++++++ .|++|++..++. .+ .+..+...+|+++ +++
T Consensus 51 ~~~la~~A~~~aL~~ag~~~~dId----~vi~~s~~~~~~----------------~~-----~~~~v~~~Lg~~~~~~~ 105 (326)
T CHL00203 51 LTKLAAEAANKALDKAHMDPLEID----LIILATSTPDDL----------------FG-----SASQLQAEIGATRAVAF 105 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC----------------Cc-----hHHHHHHHhCCCCCcee
Confidence 467999999999999999998887 577776543321 00 2346888889876 788
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|..+|+|++.||+.|.++|++|.++.+||+|+|.+..- + .++...+.+++|||++|+||++
T Consensus 106 ~v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s~~-----------~-------~~~~~~~~~~fgDga~A~ll~~ 167 (326)
T CHL00203 106 DITAACSGFILALVTATQFIQNGSYKNILVVGADTLSKW-----------I-------DWSDRKTCILFGDGAGAAIIGA 167 (326)
T ss_pred eecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhhCc-----------C-------CcccCCceEEEcceeeEEEEEE
Confidence 999999999999999999999999999999999985321 0 1111235678999999999986
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCC----------------CCCCCCC---------H--------HHHHHHHHHHHHH
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQS----------------NGLTAPN---------P--------IQQSYLLQKAWNE 303 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~----------------~~~~~p~---------~--------~~~~~~i~~al~~ 303 (831)
.+. ..+. ++...++|.. .....|. + ....++++++|++
T Consensus 168 ~~~-----~~~~----~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~ 238 (326)
T CHL00203 168 SYE-----NSIL----GFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIKCLNA 238 (326)
T ss_pred cCC-----CCeE----EEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 432 1121 1111111110 0000111 0 1234578999999
Q ss_pred cCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 304 Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
+|++++|||++-.|-.+... .+++.+.++-.. .++. .+-..+||+.+|+=...|..+ +++
T Consensus 239 ~g~~~~did~~~~hq~~~~~-----~~~~~~~lgl~~----------~k~~--~~l~~~Gn~~sasi~~~L~~~---~~~ 298 (326)
T CHL00203 239 LNISIDEVDWFILHQANKRI-----LEAIANRLSVPN----------SKMI--TNLEKYGNTSAASIPLALDEA---IQN 298 (326)
T ss_pred cCCCHHHCCEEEECCCCHHH-----HHHHHHHhCCCH----------HHhh--hHHHhhCcHHHHHHHHHHHHH---HHh
Confidence 99999999999999666443 333444444210 1121 123467999988766666544 334
Q ss_pred CccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 384 KKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 384 ~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+.+. +..+.++-+||.|=+-..++++
T Consensus 299 g~~~-----------------------------------~Gd~vll~~~G~G~s~~~~v~~ 324 (326)
T CHL00203 299 NKIQ-----------------------------------PGQIIVLSGFGAGLTWGAIVLK 324 (326)
T ss_pred CCCC-----------------------------------CCCEEEEEEEchhhhheEEEEE
Confidence 3321 1246788889988887888775
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=144.66 Aligned_cols=242 Identities=18% Similarity=0.172 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEe-ccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIG-ASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps 175 (831)
...|+.+++.+||+++|+++++++ .+++. +...+|. ....+.+|...+|++. +.
T Consensus 53 ~~~la~~Aa~~aL~~ag~~~~dId----~li~~~~~~~~~~--------------------~p~~a~~l~~~lGl~~~~~ 108 (339)
T PRK06840 53 TSDMAIAAAKPALKQAGVDPAAID----VVIYIGSEHKDYP--------------------VWSSAPKIQHEIGAKNAWA 108 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEeccCCCCCC--------------------CCchHHHHHHHhCCCCccc
Confidence 567999999999999999998887 45443 3222221 1124678999999975 88
Q ss_pred cccccccchHHHHHHHHHHHHHc-CCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc--eecCceEEE
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKN-GESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY--VRGEGAVML 252 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~-G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~--v~gEGaaav 252 (831)
+.|..+|++++.||..|+++|++ |.++.+||.+.+..... + .|+....++ .+||||+|+
T Consensus 109 ~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~s~~-----------~-------~~~~~~~~~~~~~GDgAaA~ 170 (339)
T PRK06840 109 FDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRNSDL-----------V-------DYDNPRTRFMFNFAAGGSAA 170 (339)
T ss_pred ccccccchHHHHHHHHHHHHHhcCCCccEEEEEeecccccc-----------c-------CcCCCCeeeeccCCCceeEE
Confidence 88999999999999999999999 99999999888763210 0 011112232 369999999
Q ss_pred EecchhhhhhCCCceEEEEeeeeeccCCC------------CCC--------------CCCCC----------HHHHHHH
Q psy11395 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQ------------SNG--------------LTAPN----------PIQQSYL 296 (831)
Q Consensus 253 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~------------~~~--------------~~~p~----------~~~~~~~ 296 (831)
||++... +..+. ++...+++. ... ...+. .....++
T Consensus 171 ll~~~~~----~~~il----~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (339)
T PRK06840 171 LLKKDAG----KNRIL----GSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVSIPNFLKV 242 (339)
T ss_pred EEEecCC----CCceE----EEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhhHHHHHHHH
Confidence 9986432 22222 222222211 000 00011 0124578
Q ss_pred HHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHH
Q psy11395 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 297 i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik 376 (831)
++++|+++|++++|||++-.|-.+... .+.+.+.++-.. .+.. +...+||+.+|+=...|..
T Consensus 243 i~~~L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~Lgl~~----------~~~~---~~~~~Gn~~sas~~~~L~~ 304 (339)
T PRK06840 243 IREALRKSGYTPKDIDYLAILHMKRSA-----HIALLEGLGLTE----------EQAI---YLDEYGHLGQLDQILSLHL 304 (339)
T ss_pred HHHHHHHcCCCHHHCCEEEECCcCHHH-----HHHHHHHcCCCH----------HHeE---eHHhccchhhhhHHHHHHH
Confidence 999999999999999999887444322 233444443211 1121 2357899998887666654
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++ +.+.+. ...+.++.+||.|.+-..++|+-
T Consensus 305 ~~---~~~~~~-----------------------------------~Gd~ill~~~G~G~s~~~~~l~~ 335 (339)
T PRK06840 305 AL---EQGKLK-----------------------------------DGDLVVLVSAGTGYTWAATVIRW 335 (339)
T ss_pred HH---HcCCCC-----------------------------------CCCEEEEEEEehhhheeEEEEEe
Confidence 43 332210 12468889999999999999874
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=142.53 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC-CCCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-TGPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl-~Gps~ 176 (831)
...|+.+++.+||+++|+++++++ .|++|+....+. ....+.+|+..+|+ ..|.+
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~~~Id----~li~~~~~~~~~--------------------~~~~~~~i~~~lg~~~~~~~ 103 (324)
T cd00827 48 VPTMAVEAARRALERAGIDPDDIG----LLIVATESPIDK--------------------GKSAATYLAELLGLTNAEAF 103 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CccHHHHHHHHcCCCCCcee
Confidence 467899999999999999998887 577776543321 12356789999999 46999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||..|+++|++|.++.+||+|+|.+..... ..+.++++.|||++++||++
T Consensus 104 ~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~~-------------------~~~~~~~~~gdgaaA~ll~~ 164 (324)
T cd00827 104 DLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLD-------------------EGSALEPTLGDGAAAMLVSR 164 (324)
T ss_pred ehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhccc-------------------CCCCccccccCceEEEEEec
Confidence 99999999999999999999999999999999998643321 23457889999999999987
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCC---------CC------------CCCC---------CHHHHHHHHHHHHHHcCC
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQS---------NG------------LTAP---------NPIQQSYLLQKAWNESNI 306 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~---------~~------------~~~p---------~~~~~~~~i~~al~~Agl 306 (831)
.+.. .+..+... ...+++.. .. +... .......+++++|+++|+
T Consensus 165 ~~~~--~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (324)
T cd00827 165 NPGI--LAAGIVST----HSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRAGL 238 (324)
T ss_pred Cccc--ccCCceee----eeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHHHHHccc
Confidence 6542 01222222 11111110 00 0000 024457788999999999
Q ss_pred CCCCcceEEecCCCC-CCCCHHHHHHHHHHhhhhhhhhccccccccccccc--ccCCCCcccchhhhHHHHHHH
Q psy11395 307 DVRSLGYIECHGTGT-KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG--SVKTNLGHLEAASGITGILKI 377 (831)
Q Consensus 307 ~~~dId~ie~HgtGT-~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg--s~K~~iGH~~~AsG~~~lik~ 377 (831)
+ +||+|+..|-.+- ..-+. +.+.++-.. .++... ..-..+||+.+|+-...|-.+
T Consensus 239 ~-~~i~~~~~h~~~~~~~~~~-----~~~~l~~~~----------~~~~~~~~~~~~~~Gn~~sa~~~~~L~~~ 296 (324)
T cd00827 239 S-EDIDYFVPHQPNGKKILEA-----VAKKLGGPP----------EKASQTRWILLRRVGNMYAASILLGLASL 296 (324)
T ss_pred c-cccceeeccCchHHHHHHH-----HHHHccchH----------hhhccchhhHHHHhCchHHHHHHHHHHHH
Confidence 9 9999999996554 22222 222222100 011111 234567999998876666655
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-12 Score=138.60 Aligned_cols=239 Identities=14% Similarity=0.171 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
...|+.+|+.+||++||+++++++ ++++++...++. ....+..+...+|++ -+.
T Consensus 50 ~~~la~~Aa~~aL~~agl~~~dID----~li~~s~~~~~~--------------------~p~~a~~v~~~LGl~~~~~~ 105 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDPKDIG----AVYVGSESHPYA--------------------VKPTATIVAEAIGATPDLTA 105 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCcc--------------------ccchHHHHHHHcCCCCCceE
Confidence 468999999999999999999988 577776544331 112356788999985 378
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+.|..+|++++.||+.|.++|++|.++.+||.+.|.+.. .++ | ..-+..|||++|+||+
T Consensus 106 ~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~~-------------~~~------~--~~~~~~GDGAaA~vl~ 164 (345)
T TIGR00748 106 ADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQG-------------APG------D--ALEYTAGAGGAAYIIG 164 (345)
T ss_pred EEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeccc-------------CCC------c--cCcccCCCceEEEEEc
Confidence 899999999999999999999999999999999997521 011 1 1114569999999998
Q ss_pred chhhhhhCCCceEEEEeeee-eccCCCC---C-CC--------CCC---CHHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 256 PLSVALNDHDNIYAIIKGSA-ITHNGQS---N-GL--------TAP---NPIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~-~~~dg~~---~-~~--------~~p---~~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
+... ...+.+.. ...|+.. . +. ... -......+++++|+++|++++|||++-.|-.
T Consensus 165 ~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~ 236 (345)
T TIGR00748 165 EKNT--------VAYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQP 236 (345)
T ss_pred cCCc--------ceEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCCCHHHcCEEEeCCC
Confidence 5321 11222221 1111100 0 00 000 0122337788999999999999999999944
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
+-.+ .+.+.+.++-.. .++...-.-..+||+.+||=...|...+.. +.
T Consensus 237 ~~~~-----~~~~~~~lgl~~----------ek~~~~~~~~~~GNt~sAsipl~L~~~~~~-----~~------------ 284 (345)
T TIGR00748 237 NGKF-----YLVAARMLGFPK----------EQVKPGLLTPRIGNTYSGATPVGLSAVLDI-----AE------------ 284 (345)
T ss_pred ChHH-----HHHHHHHcCCCH----------HHeeccccccccCchhhhHHHHHHHHHHHh-----cC------------
Confidence 4332 222444443211 112221112468999999877777655321 10
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
...++++.+||.|-+-+.++++
T Consensus 285 -----------------------~Gd~vll~~~G~G~s~~~~~~~ 306 (345)
T TIGR00748 285 -----------------------PGDRILAVSYGSGAGSDAFSIV 306 (345)
T ss_pred -----------------------CCCEEEEEEecCCcceeEEEEE
Confidence 1136889999999988888884
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=140.86 Aligned_cols=239 Identities=18% Similarity=0.235 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
...|+.+|+.+||++||+++++++ .+++++...+|. ....+.++...+|++. +.
T Consensus 51 ~~~la~~Aa~~aL~~ag~~~~dId----~li~~s~~~~~~--------------------~p~~a~~v~~~Lgl~~~~~~ 106 (347)
T PRK04262 51 TATIAVEAARNALKRAGIDPKEIG----AVYVGSESHPYA--------------------VKPTATIVAEALGATPDLTA 106 (347)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCcc--------------------cccHHHHHHHHcCCCCCceE
Confidence 468999999999999999998887 577776544431 0123557889999964 77
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+.+..+|++++.||+.|.++|++|.++.+||.++|.... .+.. .+ -+..|||++++||.
T Consensus 107 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~~~~-------------~~~~---~~-----~~~~GDGA~A~ll~ 165 (347)
T PRK04262 107 ADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQG-------------APGD---AL-----EYTAAAGGAAFIIG 165 (347)
T ss_pred EEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeecc-------------CCCC---CC-----CCcCCCCcEEEEEe
Confidence 889999999999999999999999999999999997211 0110 01 12359999999998
Q ss_pred chhhhhhCCCceEEEEeeee-eccCCCCC----C---------CCC-CC-HHHHHHHHHHHHHHcCCCCCCcceEEecCC
Q psy11395 256 PLSVALNDHDNIYAIIKGSA-ITHNGQSN----G---------LTA-PN-PIQQSYLLQKAWNESNIDVRSLGYIECHGT 319 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~-~~~dg~~~----~---------~~~-p~-~~~~~~~i~~al~~Agl~~~dId~ie~Hgt 319 (831)
+.+. ...|.++. ...|+... + +.. |. .....++++++|+++|++++||+++-.|-.
T Consensus 166 ~~~~--------~~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~dId~~v~Hq~ 237 (347)
T PRK04262 166 KEEV--------IAEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLKPSDYDYAVFHQP 237 (347)
T ss_pred cCcc--------cceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcCHHHhceeecCCC
Confidence 6321 12233321 11111100 0 000 01 134567899999999999999999999954
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Q psy11395 320 GTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI 399 (831)
Q Consensus 320 GT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i 399 (831)
+..+.+. +.+.++-.. .++..+-+-..+||+.+|+=...|..++. . +.
T Consensus 238 n~~~~~~-----~~~~Lgl~~----------ek~~~~~~~~~~GNt~sAsi~~~L~~~~~---~--~~------------ 285 (347)
T PRK04262 238 NGKFPLR-----VAKMLGFTK----------EQVKPGLLTPYIGNTYSGSALLGLAAVLD---V--AK------------ 285 (347)
T ss_pred chHHHHH-----HHHHcCCCH----------HHhhccchhhhhCChHHHHHHHHHHHHHH---h--CC------------
Confidence 4443322 333332110 12222212356899999987777655431 1 10
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..+++..+||.|-+-..++++
T Consensus 286 -----------------------~Gd~vll~~~G~G~~~~~~~~~ 307 (347)
T PRK04262 286 -----------------------PGDRILVVSFGSGAGSDAFSIT 307 (347)
T ss_pred -----------------------CCCEEEEEecCCCcceeeEEEE
Confidence 1135888999988887777764
|
|
| >KOG1391|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=131.42 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
+..|...++..||..+++.++.++...+|-++.+++... +++..+....|+ .-|.
T Consensus 28 aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~aSSsDgI-----------------------Yl~RHvGL~~GvP~e~pA 84 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVGAEAVDHVIMGNVLASSSDGI-----------------------YLARHVGLRVGVPKETPA 84 (396)
T ss_pred hhhHHHHHHHHHHhhcCCChhhcceEEEeeeeeccCCce-----------------------EeeeccccccCCcCccCc
Confidence 456777889999999999999998766665555554221 122233333333 3499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch---------------------hHH----HH--------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN---------------------TIA----YY-------- 222 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~---------------------~~~----~~-------- 222 (831)
++|+.-|.|+.+++-.+||.|.-|+++++|+||+|.|..... |.. +.
T Consensus 85 LtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRnvRFGT~LG~~y~lED~LW~sLtD~y~kLpMa~TA 164 (396)
T KOG1391|consen 85 LTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFCVRNVRFGTKLGSDYKLEDSLWVSLTDQYVKLPMAMTA 164 (396)
T ss_pred eeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCcceeeeeeeccccccccchhhhHhhhccchhhhcchhhhH
Confidence 999999999999999999999999999999999987653211 000 00
Q ss_pred -----------------------------HcCCCCC------------------CCCCcc-------------ccCCCCc
Q psy11395 223 -----------------------------KAGMLSR------------------DGICKT-------------FDKNADG 242 (831)
Q Consensus 223 -----------------------------~~g~ls~------------------~g~~~~-------------Fd~~a~G 242 (831)
..|.+.. |.+.|| |. .||
T Consensus 165 EnL~~qyKisRee~DefaL~SQ~~Wkkaq~aG~fn~Ei~pI~~K~kkge~~f~vDEHpRp~TT~E~L~KLppvFk--KdG 242 (396)
T KOG1391|consen 165 ENLAVQYKISREECDEFALQSQQRWKKAQDAGYFNDEIAPIEVKTKKGEQTFQVDEHPRPQTTLEQLQKLPPVFK--KDG 242 (396)
T ss_pred HHhhhhheecHHHhhHHHhhhHHHHHhhhhcCcccccccceEEeeccCceeeEecCCCCccchHHHHhhCCchhc--cCC
Confidence 0011100 123332 32 344
Q ss_pred ce-------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEE
Q psy11395 243 YV-------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 243 ~v-------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie 315 (831)
.+ .+||++++++.+++..++.+.+++|+|.++....--.+.....| .-+|+.+|+.+|+...|||.||
T Consensus 243 ~VtAGnASGi~DGA~AvivAsEdavK~~NlkPLARiVays~vGcdP~IMGIGP-----vPAI~~vLKksGlkl~DiDl~E 317 (396)
T KOG1391|consen 243 TVTAGNASGIADGAGAVIVASEDAVKKHNLKPLARIVAYSVVGCDPSIMGIGP-----VPAISGVLKKSGLKLKDIDLVE 317 (396)
T ss_pred eeeccccccccCCceeEEEechhHHhhcCCchhhhhheeeeeccChhhccccC-----cHHHHHHHHHcCCcccccceEE
Confidence 44 68999999999999999999999999999876422222222223 4589999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 316 CHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 316 ~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
.+-...+ ...|..+.+.-. ..++.+..---.+||++||||.......+..|+++
T Consensus 318 vNEAFAp-----Q~LAv~r~L~ld----------~sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr 371 (396)
T KOG1391|consen 318 VNEAFAP-----QYLAVERSLDLD----------ISKLNVNGGAIALGHPLGASGSRITAHLVHELRRR 371 (396)
T ss_pred echhhch-----HHHHHHHhhCCC----------hhhccccCceeeccCccccCcchhhHHHHHHHHHc
Confidence 8732222 112222222210 12344444444579999999999999999988875
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=136.32 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+|+.+||+++|+++++++ -+++++...+|. ....+.+|...||++. +++
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~~Id----~li~~t~~~d~~--------------------~p~~a~~v~~~Lg~~~~~~~ 107 (326)
T PRK05963 52 LSDLAASAGDMALSDAGIERSDIA----LTLLATSTPDHL--------------------LPPSAPLLAHRLGLQNSGAI 107 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCCCCC--------------------CCcHHHHHHHHhCCCCCcee
Confidence 468999999999999999999887 577777655441 1235678999999955 888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|..+|++++.||..|..+|++|. +.+||.++|.+.. .+.+ +....++++||||+|+||++
T Consensus 108 di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~s~-----------~~~~-------~~~~~~~lfGDgA~A~ll~~ 168 (326)
T PRK05963 108 DLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILSR-----------RINM-------AERASAVLFADAAGAVVLAP 168 (326)
T ss_pred eccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechhhc-----------cCCc-------cccCceEEEeecceEEEEEe
Confidence 899999999999999999999985 8899998887321 1111 11234678999999999986
Q ss_pred hhhhhhCCCceEEE-Eeeeeec-------cCCCC---------CC--CCCCC--------HHHHHHHHHHHHHHcCCCCC
Q psy11395 257 LSVALNDHDNIYAI-IKGSAIT-------HNGQS---------NG--LTAPN--------PIQQSYLLQKAWNESNIDVR 309 (831)
Q Consensus 257 ~~~A~~~g~~i~a~-I~g~~~~-------~dg~~---------~~--~~~p~--------~~~~~~~i~~al~~Agl~~~ 309 (831)
.+.. ...+... +...+.. ..|.. .. +...+ .....++++++|+++|++++
T Consensus 169 ~~~~---~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~ 245 (326)
T PRK05963 169 SAKA---NSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQNVLASAAMTPQ 245 (326)
T ss_pred cCCC---CCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4321 1112111 1110000 00000 00 00001 12345678899999999999
Q ss_pred CcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 310 SLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 310 dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
|||++-.|-.+.. =.+.+.+.++-.. .++ + ..-..+||+.+|+=...|-.+ ++.+.+
T Consensus 246 did~~~~h~~~~~-----~~~~~~~~l~l~~----------~k~-~-~~l~~~Gn~~sas~~~~L~~~---~~~~~~--- 302 (326)
T PRK05963 246 DIDRFFPHQANAR-----IVDKVCETIGIPR----------AKA-A-STLETYGNSSAATIPLSLSLA---NLEQPL--- 302 (326)
T ss_pred HCCEEEeCCCCHH-----HHHHHHHHcCCCH----------HHh-h-hhHHhhCcHHHHHHHHHHHHH---HHhCCC---
Confidence 9999999955432 2233333333110 111 1 122467999766655444322 222211
Q ss_pred CCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 390 ~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
....++++-+||.|-+-..+||+
T Consensus 303 --------------------------------~~Gd~vll~~~G~G~~~~~~ll~ 325 (326)
T PRK05963 303 --------------------------------REGERLLFAAAGAGMTGGAVVMR 325 (326)
T ss_pred --------------------------------CCCCEEEEEEEehhhhheeeEEe
Confidence 12246888899999998888875
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-13 Score=149.43 Aligned_cols=95 Identities=25% Similarity=0.416 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCC--CCCCCCC-cceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cccc
Q psy11395 103 LELSWKTIEDAGYD--SSKLSGS-NTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSLL 177 (831)
Q Consensus 103 l~aa~~ALedAG~~--~~~~~~~-~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~t 177 (831)
.++...++.|+++. +.+++.. --.+++|+.... +.....++..++...|+.+ |.++
T Consensus 27 ~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~-------------------g~~~~~~ar~~a~~aGl~~~~p~~~ 87 (392)
T COG0183 27 AEALGAALIDAGLERAPADVDAADVDDVILGCVLQA-------------------GEQGQNIARQAALAAGLPGSVPAVT 87 (392)
T ss_pred HHHHHHHHHHHHhhhccccCCHHHhhhheecccccc-------------------ccccccHHHHHHHHcCCCCCCCceE
Confidence 44556677777763 2244433 224666643221 1123346778999999986 9999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccc
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~ 216 (831)
|+.+|+||+.|++.|++.|++|++|++||||+|.|....
T Consensus 88 V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~ 126 (392)
T COG0183 88 VNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAP 126 (392)
T ss_pred EeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCC
Confidence 999999999999999999999999999999999876544
|
|
| >KOG1392|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=128.92 Aligned_cols=279 Identities=17% Similarity=0.277 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
+.|.-++....|+...++.+.++ -+++|+-..+. -.+.+|...+..-|+ +-|..
T Consensus 67 hdlar~al~~ll~kt~lpke~~d----yii~gtviqev--------------------ktsniareaal~agfsdktpah 122 (465)
T KOG1392|consen 67 HDLAREALKALLEKTKLPKEQLD----YIICGTVIQEV--------------------KTSNIAREAALLAGFSDKTPAH 122 (465)
T ss_pred hHHHHHHHHHHHHhccCCHHHhc----eeeehhhHHHH--------------------hcchHHHHHHHhcCCCCCCccc
Confidence 45566666777888888877777 35666532211 123456556666666 56999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHH------------------------HHcCCCCCC--
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY------------------------YKAGMLSRD-- 230 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~------------------------~~~g~ls~~-- 230 (831)
||..+|-|+-+|+..+..+|.+|.||++++||||++.+....... .+..+|+|.
T Consensus 123 tvtmacissn~amttgmgliatg~~dvivaggvelmsdvpirhsrkmrklml~~nkak~~gqrl~l~s~fr~nflapelp 202 (465)
T KOG1392|consen 123 TVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSDVPIRHSRKMRKLMLGMNKAKDVGQRLKLGSQFRKNFLAPELP 202 (465)
T ss_pred eeeeehhccchhhhccceeEeeCCcCEEEEcceeecccCchhhhHHHHHHhhccccccchhhhhhHHhhhhhhccCcCcc
Confidence 999999999999999999999999999999999987654321110 001112111
Q ss_pred ----------------------------------------------------------C---------------------
Q psy11395 231 ----------------------------------------------------------G--------------------- 231 (831)
Q Consensus 231 ----------------------------------------------------------g--------------------- 231 (831)
|
T Consensus 203 avaefstgetmghsadrlaaafnvsr~eqdeyalrshtlakeaq~~g~ftdvvpfkv~gkd~~t~kdngirvssle~lak 282 (465)
T KOG1392|consen 203 AVAEFSTGETMGHSADRLAAAFNVSRREQDEYALRSHTLAKEAQKNGKFTDVVPFKVDGKDPKTIKDNGIRVSSLEKLAK 282 (465)
T ss_pred hheeccccccccccHHHHHHHhccchhhhhHHHHhhhHHHHHHHhcCcccceeeEecCCCCcceecCCCcccCCHHHHhh
Confidence 0
Q ss_pred ----CCccccC--CCCcceecCceEEEEecchhhhhhCCCceEEEEeeee-eccCCCCCCCCCCCHHHHHHHHHHHHHHc
Q psy11395 232 ----ICKTFDK--NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA-ITHNGQSNGLTAPNPIQQSYLLQKAWNES 304 (831)
Q Consensus 232 ----~~~~Fd~--~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~-~~~dg~~~~~~~p~~~~~~~~i~~al~~A 304 (831)
..+||.. .++...+-||+.+.++..++.|++.|-++.|.++.+- +.+|....-+..| ..+|.+.|++|
T Consensus 283 lkpafvkpygtvtaanasfltdgasa~limteekala~gykpkaylrdflyvsqdpkdqlllgp-----ay~ipkll~ka 357 (465)
T KOG1392|consen 283 LKPAFVKPYGTVTAANASFLTDGASAALIMTEEKALANGYKPKAYLRDFLYVSQDPKDQLLLGP-----AYVIPKLLDKA 357 (465)
T ss_pred cCchhccCcceeEecccchhcCcchhhhhhhHHHHHHcCCCchHHhhhheeeccCchhheeccc-----ccccHHHHHHc
Confidence 0111110 1233346899999999999999999999999999874 4566655444444 46889999999
Q ss_pred CCCCCCcceEEecCCCCCCCCHHHHHHHH-HHhhhhhhhhc-cc-cccccc--ccccccCCCCcccchhhhHHHHHHHHH
Q psy11395 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLK-NAFHSIITYKK-NI-KNFYEK--CGLGSVKTNLGHLEAASGITGILKIIL 379 (831)
Q Consensus 305 gl~~~dId~ie~HgtGT~~gD~~E~~al~-~~f~~~~~~~~-~~-~~~~~~--~~vgs~K~~iGH~~~AsG~~~lik~~l 379 (831)
|++..|||.+|.|-...-. -....+|+. ..|+..-.... .. .+.... .|=||. .|||++||.|+.-...+..
T Consensus 358 gltlkdid~feiheafagq-ilanlkamdsdwfck~ymgr~~kvg~ppl~k~nnwggsl--sighpfgatgvrl~mh~an 434 (465)
T KOG1392|consen 358 GLTLKDIDVFEIHEAFAGQ-ILANLKAMDSDWFCKEYMGRSGKVGRPPLDKLNNWGGSL--SIGHPFGATGVRLAMHSAN 434 (465)
T ss_pred CCcccccchhhhHHHHhHH-HHhhhhhhcchHHHHHHhcccCccCCCChHHhcccCcce--ecCCcccccchhhHHHHHh
Confidence 9999999999999432100 000122221 22332111100 00 000011 112232 4799999999987766655
Q ss_pred HHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 380 CLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 380 ~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
.|+. .+.+++.|-+...||....+++|.|+
T Consensus 435 rl~~--------------------------------------e~gqygvvaacaaggqgvamlieayp 464 (465)
T KOG1392|consen 435 RLKE--------------------------------------EKGQYGVVAACAAGGQGVAMLIEAYP 464 (465)
T ss_pred HHHh--------------------------------------hcCceeEeehhhcCCcceEEEeeccC
Confidence 5443 23468899999999999999999986
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=131.60 Aligned_cols=242 Identities=13% Similarity=0.159 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
...|+.+|+.+||+++|+++++++ .+++++.+.+|. ....+.+|...||++. ++
T Consensus 60 ~~~la~~Aa~~aL~~a~~~~~dId----~lI~~t~t~d~~--------------------~P~~a~~v~~~Lg~~~~~~~ 115 (353)
T PRK12880 60 VSDLGKHAANTLLQGLNIDKNSLD----ALIVVTQSPDFF--------------------MPSTACYLHQLLNLSSKTIA 115 (353)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCCCCceE
Confidence 578999999999999999999987 577888766652 2346888999999963 77
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+-|..+|++++.||..|.++|++|..+ +||.++|.... .+.++ ......++||||+|+||+
T Consensus 116 ~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~S~-----------~~~~~-------d~~~~~lFGDGAaA~vl~ 176 (353)
T PRK12880 116 FDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTLSK-----------FIHPK-------NMNLAPIFGDGVSATLIE 176 (353)
T ss_pred EehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhhhc-----------cCCcc-------cCCceeeecccceEEEEE
Confidence 899999999999999999999999999 88888876321 11111 112245789999999998
Q ss_pred chhhhhhCCCceEEEEeeeeec-------cCCCC-C-------C-C-----------CCCC-H-------HHHHHHHHHH
Q psy11395 256 PLSVALNDHDNIYAIIKGSAIT-------HNGQS-N-------G-L-----------TAPN-P-------IQQSYLLQKA 300 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~~~-------~dg~~-~-------~-~-----------~~p~-~-------~~~~~~i~~a 300 (831)
+.+.. . .+ ..+..-+.. ..|.. . . . ...+ . .....+++++
T Consensus 177 ~~~~~--~--~~-~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~ 251 (353)
T PRK12880 177 KTDFN--E--AF-FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIFNMALECEPKSFKEI 251 (353)
T ss_pred ecCCC--C--ce-EEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHH
Confidence 54321 1 11 111111100 00000 0 0 0 0011 1 1224688999
Q ss_pred HHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHH
Q psy11395 301 WNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILC 380 (831)
Q Consensus 301 l~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~ 380 (831)
|+++|++++|||++-.|= +...=.+++.+.++-.. .+++. .+-...|++.+||=...|-..+
T Consensus 252 L~~~gl~~~did~~v~HQ-----~~~~i~~~i~~~Lgl~~----------ek~~~-~~l~~~GNtssasip~~L~~~~-- 313 (353)
T PRK12880 252 LEFSKVDEKDIAFHLFHQ-----SNAYLVDCIKEELKLND----------DKVPN-FIMEKYANLSACSLPALLCELD-- 313 (353)
T ss_pred HHHcCCCHHHCCEEEECC-----CCHHHHHHHHHHhCCCH----------HHhhh-hhHHhhCCHHHHHHHHHHHHHH--
Confidence 999999999999999993 34444555666654211 11211 1123468887776544444331
Q ss_pred HhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 381 LKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 381 L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.+ +.+ ++..+||.|=+-+.++|+-
T Consensus 314 -~~~--------------------------------------~~~-~ll~~~G~G~s~g~~ll~~ 338 (353)
T PRK12880 314 -TPK--------------------------------------EFK-ASLSAFGAGLSWGSAVLNF 338 (353)
T ss_pred -HcC--------------------------------------CcE-EEEEEEchhhhheEeEEEE
Confidence 111 112 6788999999999999875
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=130.63 Aligned_cols=300 Identities=13% Similarity=0.113 Sum_probs=172.3
Q ss_pred EEEEcccccccCCCCCHHHHHHHHhcCCCce---eeCCcccCCCcccccccccCCCCcccccccC--cccCCCCC---CC
Q psy11395 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVI---EELNESRWIWPLEIDIKNKHKGINFGAFLKD--IECFDAPF---FK 86 (831)
Q Consensus 15 IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~FD~~~---f~ 86 (831)
+.|+|+|..+|...-+.+++++.+....... .....-+|-. ...++..-.+..+ .+.+++.. -.
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~gI~~R~~~~~~~~~~~~~~~~~~~~ 73 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLC--------AKTGIETRYLVLPGGEETYAPRPEMSPS 73 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHH--------hhcceeEEEEEecCchhhcCCccccCCC
Confidence 5799999999987778888888775432110 0000001100 0011110001111 11111110 01
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+..+-.........|+.+++.+||+++|+++++++ .|+++++.. | ....++.+|.
T Consensus 74 ~~~~~~~~~~~~~~la~~Aa~~aL~~a~~~~~~Id----~li~~s~~~-~--------------------~~P~~a~~i~ 128 (361)
T cd00831 74 LDERNDIALEEARELAEEAARGALDEAGLRPSDID----HLVVNTSTG-N--------------------PTPSLDAMLI 128 (361)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhCCCHHHCC----EEEEECCCC-C--------------------CCCCHHHHHH
Confidence 22233333445678999999999999999998887 566666432 2 1234677899
Q ss_pred HHcCCCC--Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc
Q psy11395 167 YFYNFTG--PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243 (831)
Q Consensus 167 ~~lgl~G--ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~ 243 (831)
..+|++. +++.|. .+|++++.||+.|..+|++|..+.|||.++|.+... +.++. ..+.--..+
T Consensus 129 ~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~~-----------~~~~d---~~~~~~~~~ 194 (361)
T cd00831 129 NRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSLW-----------YRGPD---HRSMLVGNA 194 (361)
T ss_pred HHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccce-----------eCCCC---cHHHhhhhh
Confidence 9999973 678898 899999999999999999999999999999974321 00000 000000356
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeecc--------------CCCCCCCC--CCC--HHHHHHHHHHHHHHc-
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH--------------NGQSNGLT--APN--PIQQSYLLQKAWNES- 304 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~--------------dg~~~~~~--~p~--~~~~~~~i~~al~~A- 304 (831)
++|||++|+||.+.+.... .......+.+..... .+....+. .+. .....++++++|+++
T Consensus 195 lfGDgaaA~ll~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~L~~~~ 273 (361)
T cd00831 195 LFGDGAAAVLLSNDPRDRR-RERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLRKLLARLG 273 (361)
T ss_pred hccCCceEEEEEcCCCccc-ccccceeeecccceeeecCCCceEEEEEcceEEEEeChhHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999987543210 001112222221110 00000000 011 234567889999999
Q ss_pred -CCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccc-cccCCCCcccchhhhHHHHHHH
Q psy11395 305 -NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL-GSVKTNLGHLEAASGITGILKI 377 (831)
Q Consensus 305 -gl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~v-gs~K~~iGH~~~AsG~~~lik~ 377 (831)
|++++||+++-.|-.+-++- +++.+.++-.. .++.. -.+-..+||+.+|+=...|..+
T Consensus 274 ~g~~~~did~~~~H~~~~~i~-----~~v~~~lgl~~----------~~~~~s~~~l~~~GN~~sasi~~~L~~~ 333 (361)
T cd00831 274 IGLFKLAFDHWCVHPGGRAVL-----DAVEKALGLSP----------EDLEASRMVLRRYGNMSSSSVLYVLAYM 333 (361)
T ss_pred CCCccccceEEEECCCChHHH-----HHHHHHcCCCH----------HHHHHHHHHHHHhCCchhccHHHHHHHH
Confidence 99999999999996655432 33444443211 11110 0122357999999866666655
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=126.46 Aligned_cols=344 Identities=14% Similarity=0.124 Sum_probs=195.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCC--cccccccCcccCCCCCC-----
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--NFGAFLKDIECFDAPFF----- 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~--~~~~~l~~~~~FD~~~f----- 85 (831)
-+..|.|+|...|.-...-+++++.+.+--+. ...+..+-....-+ ...++ ++-...++....++.++
T Consensus 15 ~~~~I~~igta~P~~~~~q~~~~~~~~~~~~~-~~~~~~~~~~~~i~----~~sgI~~R~~~~~~~~~~~~~~~~~~~~p 89 (393)
T PLN03172 15 GPATILAIGKATPANCVSQADYPDYYFRITNS-EHMTELKEKFKRMC----DKSMIKKRYMHLTEEILKENPNMCAYMAP 89 (393)
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHhcc-cCchHHHHHHHHHH----HhcCCCceeEeccchhhhhCccccccCCC
Confidence 45889999999998666767777766522110 00110000000000 01111 11111111111112222
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
++..+....+.-...|+.+|+.+||+++|+++++++ .++++++++.. ...++.+|
T Consensus 90 ~~~~r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId----~ii~~t~t~~~---------------------~P~~a~~l 144 (393)
T PLN03172 90 SLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKIT----HLVFCTTSGVD---------------------MPGADYQL 144 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEccCCCc---------------------CchHHHHH
Confidence 455666666667779999999999999999988886 46666654311 12478889
Q ss_pred HHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 166 SYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 166 s~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
...||++.- .+.+..+|++++.||..|.+.+++|....+||.++|.+... + ..++.+ ..+.--..
T Consensus 145 ~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~-----~-----~~~~d~--~~~~~v~~ 212 (393)
T PLN03172 145 TKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVT-----F-----RGPSDT--HLDSLVGQ 212 (393)
T ss_pred HHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhh-----h-----cccccc--cHHhhhcc
Confidence 999999863 35678999999999999999999999999999999985310 0 011000 00000124
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeee----eccCCCCC------CC---CCCC-----HHHHHHHHHHHHHHc
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA----ITHNGQSN------GL---TAPN-----PIQQSYLLQKAWNES 304 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~----~~~dg~~~------~~---~~p~-----~~~~~~~i~~al~~A 304 (831)
..+||||+|+||+..+... .....+ .|.++. ..+++... ++ ..+. .......+++.|++.
T Consensus 213 ~LFGDGAaAvVl~~~~~~~-~~~~~~-~i~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~~~~~L~~~ 290 (393)
T PLN03172 213 ALFGDGAAAVIIGADPDTK-IERPLF-EIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFAPI 290 (393)
T ss_pred chhcCceEEEEEecCCCCc-ccCcee-EEeeeccEEecCCcccccceEEcCCcEEEEechHHHHHHHHHHHHHHHHhhhc
Confidence 5689999999998643211 011222 333332 12222110 10 0011 234566788899999
Q ss_pred CCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHHHH-Hh
Q psy11395 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKIILC-LK 382 (831)
Q Consensus 305 gl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~l~-L~ 382 (831)
|++..||+++-.|=-|-. =++++.+.++-.. .++... .+-...|++-+|+=+..|-+.... ++
T Consensus 291 gl~~~di~~~~~Hqgg~~-----Il~~v~~~Lgl~~----------~~~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~ 355 (393)
T PLN03172 291 GINDWNSIFWIAHPGGPA-----ILDQVEIKLDLKE----------EKLRATRHVLSDYGNMSSACVLFILDEMRKKSIE 355 (393)
T ss_pred CCCccccceEEecCCcHH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHhCccHHhHHHHHHHHHHhhhhh
Confidence 999999999999954443 3445555554211 011110 122346888877755444433211 11
Q ss_pred cCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 383 NKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 383 ~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
.+.+. + .....+++..+||-|=+-..++|+..+
T Consensus 356 ~g~~~------------------------------~--G~~~~~~ll~afGpG~t~~~~ll~~~~ 388 (393)
T PLN03172 356 EGKGS------------------------------T--GEGLEWGVLFGFGPGLTVETVVLHSVP 388 (393)
T ss_pred cCCCC------------------------------C--CCCcceEEEEEeCCcceeeeeeeEecc
Confidence 11110 0 011246889999999999999998643
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=130.37 Aligned_cols=270 Identities=14% Similarity=0.139 Sum_probs=158.2
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+..+...+.+....|+.+|+.+||+++|+++++++ .|++++++.+| ....+..|.
T Consensus 97 ~~~r~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId----~li~~t~t~~~---------------------~P~~a~~v~ 151 (399)
T PLN03171 97 LDARLDIAADAVPELAAEAAKKAIAEWGRPAADIT----HLVVTTNSGAH---------------------IPGVDFRLV 151 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCC---------------------CCchHHHHH
Confidence 34444444556778999999999999999999887 57777765433 123567888
Q ss_pred HHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc
Q psy11395 167 YFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243 (831)
Q Consensus 167 ~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~ 243 (831)
..||++.- .+.+..+|++++.||..|.++|++|....|||.++|.+..- +.+..+. .++..-.+.
T Consensus 152 ~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s~~-----------~~~~d~~-~~~~~v~~~ 219 (399)
T PLN03171 152 PLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLL-----------FNGPDEG-CFQTLLNQG 219 (399)
T ss_pred HHhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccccc-----------cCCCCcc-cHHhhhccc
Confidence 99999753 45666799999999999999999999999999999984211 1100000 011111367
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCC-------------C-CCCCCC-HHHHHHHHHHHHHH-----
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQS-------------N-GLTAPN-PIQQSYLLQKAWNE----- 303 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~-------------~-~~~~p~-~~~~~~~i~~al~~----- 303 (831)
++||||+|+||++.+...+. .+..|.......++.+ . .+.... +....+.+++++++
T Consensus 220 LFGDGAaA~vl~~~~~~~~~---~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~vp~~i~~~l~~~l~~~l~~~ 296 (399)
T PLN03171 220 LFGDGAAAVIVGADADAAER---PLFEIVSAAQAIIPESDDAINMHFTEGGLDGNIGTRQVPGLIGDNIERCLLDAFAPL 296 (399)
T ss_pred cccCccEEEEEecCCCCCCC---CceEEEEeeeEEecCCchheEEEEEcCCceEEECchhHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999874432111 1223332222111111 0 111011 23344444666554
Q ss_pred ----cCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHH
Q psy11395 304 ----SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 304 ----Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~ 378 (831)
+|++++||+++ .|=.+ ..=++++.+.++-.. .++... .+-...|++.+||=...|-..+
T Consensus 297 ~~~~~g~~~~di~~~-~Hq~~-----~~il~~v~~~Lgl~~----------ek~~~s~~~l~~yGNtssaSip~~L~~~~ 360 (399)
T PLN03171 297 LGGDGGAEWNDLFWA-VHPGS-----SAILDQVDAALGLEP----------EKLAASRRVLSDYGNMFGATVIFALDELR 360 (399)
T ss_pred cccccCCCcccceEE-EcCCc-----HHHHHHHHHHcCCCH----------HHhHHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 58899999998 68333 333444555554211 111110 1123468888876544444332
Q ss_pred HHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 379 LCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 379 l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
...+.+ +.+ .....+++..+||.|=+-..++|+.
T Consensus 361 ~~~~~~-~~~--------------------------------G~~~d~vll~~fG~Glt~~~~ll~~ 394 (399)
T PLN03171 361 RQMEEA-AAA--------------------------------GAWPELGVMMAFGPGLTVDAMLLHA 394 (399)
T ss_pred hhHhhc-CCC--------------------------------CCCcceEEEEEEcccHHHHHHHhhc
Confidence 221110 000 0012468888999888887777764
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=124.10 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
...|+.+|+.+||++||+++++++ .+|+|.. .+ ....++.++..||+ |.+.
T Consensus 50 e~eLa~eAa~~ALekAGL~~~DID----~IIvGdl-~~----------------------Q~~~As~vA~~LGI--P~fd 100 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKKDDVD----FFLAGDL-LN----------------------QIITANFVARDLGI--PFLG 100 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEeCC-CC----------------------cccHHHHHHHHhCC--CEEE
Confidence 467999999999999999999988 5777641 00 01246778888886 8899
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
|.++|+|++.||..|+.+|++|.+|.+||++++.+.+.... .+....-|..+ ...-...++|||++||++.
T Consensus 101 V~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErq-----fr~p~eyg~q~----~~ta~~tgdGAGA~vl~~~ 171 (327)
T TIGR02845 101 LYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQ-----FRYPTEYGVQK----PPTAQWTVTGAGAVLLAST 171 (327)
T ss_pred EeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhh-----cccccccccCC----CCeeeEEEcccEEEEEeec
Confidence 99999999999999999999999999999998875432211 11111111111 2344578999999999864
Q ss_pred hhhhhCCCceEEE----EeeeeeccCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 258 SVALNDHDNIYAI----IKGSAITHNGQS-NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 258 ~~A~~~g~~i~a~----I~g~~~~~dg~~-~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
. .+-+|... |..+++. |... ..-+ ..+....|.+-+++.|.+|+|-|.|-+-.-|
T Consensus 172 ~----~~~~i~~~t~gkv~d~g~~-d~~nmgaam---apaa~dti~~h~~d~~~~~~~yd~i~tgdlg 231 (327)
T TIGR02845 172 G----GGPRITSATIGKVVDYGIT-DPLDMGAAM---APAAADTIEAHFKDTGRSVDDYDLIVTGDLA 231 (327)
T ss_pred C----CCCceEEEEEEEEEecCCC-Ccccchhhh---hHHHHHHHHHHHHHcCCChhhccEEEecchH
Confidence 2 34455433 3333332 1110 0112 3456788999999999999999999965444
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-12 Score=157.45 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=59.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccccCCCCCCCCceeeccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLICKKM 829 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 829 (831)
++||||||+|||||++++++||++|.+|+|+|++||++|||++.||++++. .+||+|+||-
T Consensus 4 ~~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~-~~gk~~~~~g 64 (1061)
T COG3321 4 EPIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPT-VPGKSYSRWG 64 (1061)
T ss_pred CcEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccc-cccccccccc
Confidence 569999999999999999999999999999999999999999999999998 9999999985
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-10 Score=125.76 Aligned_cols=344 Identities=11% Similarity=0.106 Sum_probs=198.5
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCC--cccccccCcccCCCCCC-----
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--NFGAFLKDIECFDAPFF----- 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~--~~~~~l~~~~~FD~~~f----- 85 (831)
-+..|.|+|.-+|.-...-+++++.+.+--.. ...+..+-....-++ ..++ ++-...+++...++.++
T Consensus 19 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~-~~~~~~~~~~~~i~~----~sgI~~R~~~~~~~~~~~~~~~~~~~~p 93 (401)
T PLN03170 19 GPATVLAIGTATPANCVHQADYPDYYFRITKS-EHMTELKEKFKRMCD----KSQIRKRYMHLTEEYLAENPNMCAYMAP 93 (401)
T ss_pred CCeEEEEEeecCCCccccHHHHHHHHHHHccc-cCchhHHHHHHHHHH----hCCCCceeEeccccchhhCccccccCCC
Confidence 45789999999998666777777777642210 011110000000000 1111 11111111111223333
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
++..+.....+-.-.|+.+|+.+||+++|+++++|+ .+++.++++ + ....++.+|
T Consensus 94 ~~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId----~lI~~T~Tg-~--------------------~~Ps~a~~l 148 (401)
T PLN03170 94 SLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKIT----HLVFCTTSG-V--------------------DMPGADYQL 148 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEccCC-C--------------------CCChHHHHH
Confidence 455666666666778999999999999999988886 466665432 1 023478889
Q ss_pred HHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 166 SYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 166 s~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
...||++.- .+.+..+|++++.||..|.+.+++|....|||.++|.+..-. . .++. .+ .+..-..
T Consensus 149 ~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~-----~-----~~~~-~~-~~~~~~~ 216 (401)
T PLN03170 149 TKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTF-----R-----GPSE-SH-LDSMVGQ 216 (401)
T ss_pred HHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhcc-----C-----Cccc-ch-hhhhhhh
Confidence 999999763 578999999999999999999999999999999999853110 0 0000 00 1111223
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeee--------------ccCCCCCCCC--CCC--HHHHHHHHHHHHHHc
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI--------------THNGQSNGLT--APN--PIQQSYLLQKAWNES 304 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~--------------~~dg~~~~~~--~p~--~~~~~~~i~~al~~A 304 (831)
.++||||+|+||.+.+... .......+.+... ...|....+. .|. ......+++++|+++
T Consensus 217 ~LFGDGAaAvVl~~~~~~~--~~~~~~~l~~~~~~~~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L~~~ 294 (401)
T PLN03170 217 ALFGDGAAAVIVGADPDER--VERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPL 294 (401)
T ss_pred hhhhceeEEEEEecCCccc--ccCCceEEeeccceEecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999998643210 0111112322211 0011100010 011 234566888999999
Q ss_pred CCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccc-cccCCCCcccchhhhHHHHHHHHHH-Hh
Q psy11395 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL-GSVKTNLGHLEAASGITGILKIILC-LK 382 (831)
Q Consensus 305 gl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~v-gs~K~~iGH~~~AsG~~~lik~~l~-L~ 382 (831)
|++++||+++-.|=-|.. =++++.+.++-.. .++.. -.+-...||+.+|+=...|-+.... ++
T Consensus 295 gl~~~di~~~v~Hqgg~~-----il~~v~~~Lgl~~----------~~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~ 359 (401)
T PLN03170 295 GITDYNSIFWVAHPGGPA-----ILDQVEAKVGLEK----------ERMRATRHVLSEYGNMSSACVLFILDEMRKRSAE 359 (401)
T ss_pred CCCccccCeEEecCCcHH-----HHHHHHHHcCCCh----------HHHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhh
Confidence 999999999999944433 3344445543211 11110 0122356999888866666554321 12
Q ss_pred cCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 383 NKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 383 ~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
.+.+.+- ....+++..+||-|=+-..++|+..+
T Consensus 360 ~g~~~~G--------------------------------~~~~~~ll~afGpG~t~~~~ll~~~~ 392 (401)
T PLN03170 360 DGQATTG--------------------------------EGFDWGVLFGFGPGLTVETVVLHSVP 392 (401)
T ss_pred cCCCCCC--------------------------------CCccEEEEEEeCchHhHHhHHheecc
Confidence 2222100 01246889999999899999998754
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=122.67 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..|+.+|+.+||+++ ++++++ .+++|+.++.+. ....+..|...||+++ +++
T Consensus 50 ~~la~~Aa~~aL~~a--~~~~Id----~li~~t~s~~~~--------------------~~s~a~~v~~~Lgl~~~~~~~ 103 (379)
T TIGR01835 50 VTMAASAAKPILDRN--DKQKID----MVIFGTESGIDQ--------------------SKAAAVYVHGLLGLQPFCRSF 103 (379)
T ss_pred HHHHHHHHHHHHHhC--CHhhCC----EEEEEeCCCCCC--------------------CCCHHHHHHHHhCCCCCceEE
Confidence 579999999999998 666666 577887655431 1236788999999974 788
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
-|..+|++++.||+.|+++|++|..+.+||.++|.... .. ....-...|+||+|+||.+
T Consensus 104 dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~----------~~-----------~~~~~~~~GdGA~A~Ll~~ 162 (379)
T TIGR01835 104 ELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKY----------GL-----------ESPGEPTQGAGAVAMLVSA 162 (379)
T ss_pred EeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhc----------cc-----------CCCCCccccCccEEEEEec
Confidence 99999999999999999999999999999999987211 00 0111235799999999975
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCC-----CCCCCC--CH--------HHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQS-----NGLTAP--NP--------IQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~-----~~~~~p--~~--------~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
. ..+...-.+....++... .+...| ++ .....++++.|+++|++++||+++-.|-..+
T Consensus 163 ~-------~~i~~~~~~~~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g~~~~did~~i~H~p~~ 235 (379)
T TIGR01835 163 D-------PKLLAINEDSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLSLADFAAFCFHVPFT 235 (379)
T ss_pred C-------CCeeEEeccceeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhCCCHHHcCEEEECCCCC
Confidence 3 223322112111111110 011112 11 2345788899999999999999999997666
Q ss_pred CC
Q psy11395 322 KL 323 (831)
Q Consensus 322 ~~ 323 (831)
++
T Consensus 236 ~~ 237 (379)
T TIGR01835 236 KM 237 (379)
T ss_pred cH
Confidence 54
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=119.39 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCC--
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGP-- 174 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gp-- 174 (831)
....|+.+|+.+||+++|+++++++ .|++++.. +|. ....+..|...||++.-
T Consensus 105 ~~~~La~~Aa~~aL~~ag~~~~dId----~lI~~t~t-~~~--------------------~P~~a~~l~~~LGl~~~~~ 159 (391)
T PLN03169 105 AVTQMAVEASLACIKEWGRPVSDIT----HLVYVSSS-EAR--------------------LPGGDLYLAKQLGLSPDVQ 159 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHCC----EEEEECcC-CCC--------------------CCcHHHHHHHHhCcCCcce
Confidence 4567999999999999999998887 46666653 441 12356788999999752
Q ss_pred -ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEE
Q psy11395 175 -SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 175 -s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
.+.+..||++++.||..|..+|++|....|||.++|....- +. .+ ...+ ++......++||||+|+|
T Consensus 160 ~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~s~~-----~~-----~~-~~~~-~~d~~~~~lFGDGAaA~v 227 (391)
T PLN03169 160 RVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETTILG-----FR-----PP-SPDR-PYDLVGAALFGDGAAAVI 227 (391)
T ss_pred eeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcChhh-----cc-----CC-Cccc-hhhhhhhhhccCceEEEE
Confidence 47789999999999999999999999999999999984210 00 00 0000 111223457899999999
Q ss_pred ecchhhhhhCCCceEEEEeeeee----cc----------CCCC--CCCCCCC--HHHHHHHHHHHHHHcCCCCCCcc--e
Q psy11395 254 LKPLSVALNDHDNIYAIIKGSAI----TH----------NGQS--NGLTAPN--PIQQSYLLQKAWNESNIDVRSLG--Y 313 (831)
Q Consensus 254 L~~~~~A~~~g~~i~a~I~g~~~----~~----------dg~~--~~~~~p~--~~~~~~~i~~al~~Agl~~~dId--~ 313 (831)
|+...... ....++ .+...+. .. .|.. .+...|. ......+++++|+++|++++||| +
T Consensus 228 l~~~~~~~-~~~~~~-~l~~~~~~~ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~~~gl~~~did~~~ 305 (391)
T PLN03169 228 IGADPIPV-SESPFF-ELHTAIQQFLPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMKKAGLVEKDYNDLF 305 (391)
T ss_pred EecCCCcc-cCCcce-EEEeeeeeEcCCCccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcce
Confidence 98643221 011122 1211111 00 0100 0000111 23456678999999999999998 8
Q ss_pred EEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHH
Q psy11395 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 314 ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik 376 (831)
+-.|=.+. .=++++.+.++-.. .++... .+-..+||+.+|+=...|-+
T Consensus 306 ~v~Hq~n~-----~il~~v~~~Lgl~~----------ek~~~s~~~l~~~GNtsSasip~~L~~ 354 (391)
T PLN03169 306 WAVHPGGP-----AILNRLEKKLKLAP----------EKLECSRRALMDYGNVSSNTIVYVLEY 354 (391)
T ss_pred EEecCCCH-----HHHHHHHHHcCCCH----------HHHHHHHHHHHHhCCchHhHHHHHHHH
Confidence 88884443 23334444443110 111110 11235699988875554443
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=115.85 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
...|+.+|+.+||++||+++++++ .+|+|... ++ ...++.++..+|+ |.+-
T Consensus 56 eseLa~eAa~~ALekAGI~~~DID----~lI~Gdll-~Q----------------------~~sAs~vA~~LGI--Pa~d 106 (337)
T PRK08304 56 ERKMMEDAIQQALQKANLKKSDID----YLLAGDLL-NQ----------------------IISANFAARELGI--PFLG 106 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCC-CC----------------------cchHHHHHHHhCC--cEEE
Confidence 467999999999999999999988 57777420 00 1245667778876 9999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
|.++|+|++.||..|+.+|++|.+|.+||++++.+..-... .+.=...|..||. .-...+.|+|++||.+.
T Consensus 107 V~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerq-----fr~P~eyg~qrp~----taqwtvtGAGA~i~~~~ 177 (337)
T PRK08304 107 LYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQ-----FRFPTEYGGQRPP----TAQWTVTGAGAVLLSRE 177 (337)
T ss_pred EeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhh-----ccCchhccccCCC----cceEEeeccEEEEEecC
Confidence 99999999999999999999999999999999875443211 1111112333332 22346899999999753
Q ss_pred hhhhhCCCceEEE----EeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 258 SVALNDHDNIYAI----IKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 258 ~~A~~~g~~i~a~----I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
..+-+|-.. |..+++. |... +-+--..+....|.+-+++.|.+|+|-|.|-+-.-|
T Consensus 178 ----~~~~~i~~~t~Gkv~D~g~~-d~~n--mgaaMapAa~dti~~h~~d~~~~~~~yDli~tGDlg 237 (337)
T PRK08304 178 ----GSGPRITHATIGKVVDLGIK-DPND--MGAAMAPAAADTIQQHFKDTGRSPEDYDLIVTGDLG 237 (337)
T ss_pred ----CCCceEEEEeEEEEEecCCC-Cccc--chhhhhHHHHHHHHHHHHHcCCChhhccEEEEcchH
Confidence 223333322 2333321 1110 111113456788999999999999999999965444
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=119.57 Aligned_cols=307 Identities=12% Similarity=0.121 Sum_probs=174.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCC--cccccccC-----cccCCCCCC
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--NFGAFLKD-----IECFDAPFF 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~--~~~~~l~~-----~~~FD~~~f 85 (831)
-+..|.|+|..+|.-...-+++++.+.+--.. ...+..+-....-+ ...++ ++-..-++ ...++...-
T Consensus 15 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~-~~~~~~~~~~~~i~----~~sgI~~R~~~~~~~~~~~~~~~~~~~~p 89 (391)
T PLN03173 15 GPATIMAIGTSTPPNCVDQSTYPDYYFRITNS-EHKVELKEKFKRMC----EKSMIKKRYMHLTEEILKENPSVCEYMAP 89 (391)
T ss_pred CCeEEEEEEccCCCcccCHHHHHHHHHHHhcc-ccchhHHHHHHHHH----HhCCCCeeeEeccchhhhhCcccccccCC
Confidence 46889999999997666667777776532210 00010000000000 00111 11111111 111121112
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
++..+......-...|+.+|+.+||+++|+++++++ -|++.++++ +. ...++.+|
T Consensus 90 ~~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId----~li~~t~t~-~~--------------------~P~~a~~l 144 (391)
T PLN03173 90 SLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKIT----HLVFCTTSG-VD--------------------MPGADYQL 144 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEccCC-Cc--------------------ccHHHHHH
Confidence 445555555666778999999999999999998887 466666532 10 12477889
Q ss_pred HHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 166 SYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 166 s~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
...||++.- .+.+..||++++.||..|.+.++++....+||.++|.+.... ..++.+ ..+.--..
T Consensus 145 ~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~----------~~~~d~--~~~~~v~~ 212 (391)
T PLN03173 145 TKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTF----------RGPSDT--HLDSLVGQ 212 (391)
T ss_pred HHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhhhhh----------CCcccc--chhhhhhh
Confidence 999999863 457899999999999999999999999999999999843100 011100 00000123
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeee----eccCCCC------CC----C--CCCC--HHHHHHHHHHHHHHc
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA----ITHNGQS------NG----L--TAPN--PIQQSYLLQKAWNES 304 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~----~~~dg~~------~~----~--~~p~--~~~~~~~i~~al~~A 304 (831)
..+||||||+||+..+.. ....+.+ .|.++. ..+++.. .+ + ..|. .......++++|++.
T Consensus 213 ~LFGDGAaAvvl~~~~~~-~~~~~~~-~l~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~~~~~i~~~L~~~ 290 (391)
T PLN03173 213 ALFGDGAAAIIIGSDPVL-GVEKPLF-ELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPL 290 (391)
T ss_pred hhhcCceEEEEEeCCCCC-CcCCcce-EEEeeeeEEecCCccceeeEEEcCceEEEEecHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999999863211 0011112 232221 1111110 01 0 1111 234567888999999
Q ss_pred CCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHH
Q psy11395 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 305 gl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~ 378 (831)
|++++||+++-.|=-|-++ ++++.+.++-.. .++... .+-...|++.+||=...|-+..
T Consensus 291 gl~~~di~~~v~Hqgg~~I-----l~~v~~~LgL~~----------ekl~~s~~vl~~yGNtSSaSv~~vL~~~~ 350 (391)
T PLN03173 291 GISDWNSLFWIAHPGGPAI-----LDQVEAKLALKP----------EKLRATRHVLSEYGNMSSACVLFILDEMR 350 (391)
T ss_pred CCCccccCeEEECCCcHHH-----HHHHHHHcCCCh----------HHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 9999999999999555443 444555554211 111110 1233468888887555555543
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=117.88 Aligned_cols=306 Identities=11% Similarity=0.143 Sum_probs=172.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCC--cccccccCcccCCCCCC-----
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI--NFGAFLKDIECFDAPFF----- 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~--~~~~~l~~~~~FD~~~f----- 85 (831)
.+..|.|+|...|.-...-+++++.+.+--.. ...+..+-....-+ ...++ ++-..-++....++.|.
T Consensus 14 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~-~~~~~~~~~~~~i~----~~sgI~~R~~~~~~~~~~~~~~~~~~~~p 88 (389)
T PLN03168 14 GPACVLGIGTAVPPAEFLQSEYPDFFFNITNC-GEKEALKAKFKRIC----DKSGIRKRHMFLTEEVLKANPGICTYMEP 88 (389)
T ss_pred CCeEEEEEeccCCCcccCHHHHHHHHHHhccc-cCcHHHHHHHHHHH----HhcCCCeeeeeccccchhhCcccccccCC
Confidence 56889999999997666667777766542210 00110000000000 00111 11111111111112221
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
.+..+...+..-...|+.+|+.+||+++|+++++|+ .|+++++++ |. ...++.+|
T Consensus 89 s~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId----~lI~~T~Tg-~~--------------------~Ps~a~~l 143 (389)
T PLN03168 89 SLNVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDIT----HIVFATTSG-VN--------------------MPGADHAL 143 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCC-CC--------------------CccHHHHH
Confidence 344555555666778999999999999999999887 577777654 21 12367889
Q ss_pred HHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 166 SYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 166 s~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
...||++.- .+.+..||++++.||..|...|++|....|||.++|.+..- +. .++. ...+..-..
T Consensus 144 ~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S~~-----~~-----~~~~--~~~~~~~~~ 211 (389)
T PLN03168 144 AKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAVT-----YR-----APSE--NHLDGLVGS 211 (389)
T ss_pred HHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhhhh-----cc-----Cccc--ccHHHHhcc
Confidence 999999762 68899999999999999999999999999999999985321 10 0000 001111234
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeee-c--cCCCC------CCC----CC--CC--HHHHHHHHHHHHHHcC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI-T--HNGQS------NGL----TA--PN--PIQQSYLLQKAWNESN 305 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~-~--~dg~~------~~~----~~--p~--~~~~~~~i~~al~~Ag 305 (831)
..+||||||+||+..+... .+..++........ - ++|.. .++ .. |. ......+++++++..|
T Consensus 212 ~LFGDGAaAvvl~~~~~~~-~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~~~~ 290 (389)
T PLN03168 212 ALFGDGAGVYVVGSDPKPE-VEKALFEVHWAGETILPESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARKCVG 290 (389)
T ss_pred ccccCccEEEEEecCCCCc-cCCcceEEEeeeeEEEcCCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999998643211 01123332222110 0 11110 000 11 11 1334667778888888
Q ss_pred CCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHH
Q psy11395 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 306 l~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik 376 (831)
+...|++++-.|=-|-++ ++++.+.++-.. .++... .+-...|++-+||=...|-+
T Consensus 291 ~~~~d~~~~v~Hqgg~~I-----l~~v~~~Lgl~~----------ek~~~s~~vl~~yGNtSSaSv~~vL~~ 347 (389)
T PLN03168 291 SPDWNEMFWAVHPGGPAI-----LDQVEAKLKLTK----------DKMQGSRDILSEFGNMSSASVLFVLDQ 347 (389)
T ss_pred CCccccceEEecCCcHHH-----HHHHHHHcCCCH----------HHHHHHHHHHHHhCccHhhhHHHHHHH
Confidence 887888888899555443 444444443211 111110 12345688888875544433
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-08 Score=110.82 Aligned_cols=272 Identities=12% Similarity=0.096 Sum_probs=163.0
Q ss_pred cCCCCCCCCChh--hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCc
Q psy11395 79 CFDAPFFKISPI--EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGN 156 (831)
Q Consensus 79 ~FD~~~f~i~~~--ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~ 156 (831)
.+-+.++.++|. -..........+-.++.++|+++|+++++++ -+++. ++.++
T Consensus 167 y~P~~~~~~~~~~~~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID----~LIv~-cS~~~-------------------- 221 (521)
T PLN02854 167 YLPRGITSRPPNLCMEEARAEAEAVMFGALDSLFSKTGVKPRDIG----ILIVN-CSLFN-------------------- 221 (521)
T ss_pred ccCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEE-CCCCC--------------------
Confidence 455556666663 2233344556777788999999999998886 34443 33322
Q ss_pred chhHHHHHHHHHcCCCC--Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCC
Q psy11395 157 SMAVLANRISYFYNFTG--PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGIC 233 (831)
Q Consensus 157 ~~~~~a~ris~~lgl~G--ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~ 233 (831)
....++.+|...||++. .++.|+ .|||+++.||..|.+.|++|....|||.++|.+. ...+. |
T Consensus 222 p~PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S-~~~y~-----------g-- 287 (521)
T PLN02854 222 PTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT-LNWYF-----------G-- 287 (521)
T ss_pred CCCCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee-cCCCC-----------C--
Confidence 12347888999999973 678888 8999999999999999999999999999999853 11100 0
Q ss_pred ccccCCCC---cceecCceEEEEecchhhhhhCCC---ceEEEEeeeeeccC--------------CC-CCCC--CCCC-
Q psy11395 234 KTFDKNAD---GYVRGEGAVMLMLKPLSVALNDHD---NIYAIIKGSAITHN--------------GQ-SNGL--TAPN- 289 (831)
Q Consensus 234 ~~Fd~~a~---G~v~gEGaaavvL~~~~~A~~~g~---~i~a~I~g~~~~~d--------------g~-~~~~--~~p~- 289 (831)
+.... -..+||||||+||.+.... .+. ++...+ .+....| |. ...+ ..|.
T Consensus 288 ---~Drs~lv~~~LFgDGAAAvlLs~~~~~--~~~~k~~L~~~v-~t~~~ad~~~~~~i~~~~d~~G~~g~~lsk~l~~v 361 (521)
T PLN02854 288 ---NDRSMLLCNCIFRMGGAAVLLSNKARD--RKRSKYQLVHTV-RTHKGADDKNYNCVYQREDDKGTIGVSLARELMAV 361 (521)
T ss_pred ---CchhhhcceeeeccceeEEEEeccccc--ccccchheeeEE-EEEEeeCCCccCeEEeccCCCCcccccccccccch
Confidence 11111 3568999999999863311 111 111111 1111111 11 0000 0000
Q ss_pred -HHH---------------------HHHHHHHHHHHcCCCC------CCcceEEecCCCCCCCCHHHHHHHHHHhhhhhh
Q psy11395 290 -PIQ---------------------QSYLLQKAWNESNIDV------RSLGYIECHGTGTKLGDPIEIQGLKNAFHSIIT 341 (831)
Q Consensus 290 -~~~---------------------~~~~i~~al~~Agl~~------~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~ 341 (831)
+.. ....+++.|.++|+.+ .||+++-.|--|..+ ++++.+.++-...
T Consensus 362 a~~~l~~~i~~~g~~Vl~~se~~~f~~~~i~~~L~~~gl~~~~pd~~~didhf~iHqggr~I-----Id~v~k~LgL~~~ 436 (521)
T PLN02854 362 AGDALKTNITTLGPLVLPLSEQFMFFVTLVRRKLLKAKVKPYIPDFKLAFEHFCIHAGGRAV-----LDELQKNLQLSDW 436 (521)
T ss_pred hhhhhhhhhhhccccccchHHHHHHHHHHHHHHHHHcCCCccCCcccccCcEEEECCCCHHH-----HHHHHHHcCCCcc
Confidence 000 2456788899999987 699999999666543 3445444432100
Q ss_pred hhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccc
Q psy11395 342 YKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYE 421 (831)
Q Consensus 342 ~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~ 421 (831)
+.-+.-..-..+|++-+||=...|..+. ++|.+
T Consensus 437 ---------~~e~sr~tL~rfGNTSSASI~~~L~~~~---~kGri----------------------------------- 469 (521)
T PLN02854 437 ---------HMEPSRMTLHRFGNTSSSSLWYELAYTE---AKGRV----------------------------------- 469 (521)
T ss_pred ---------cccchHHHhhhcCChHhhHHHHHHHHHH---HcCCC-----------------------------------
Confidence 0001112223468888777555554442 23221
Q ss_pred ccccEEEEcccCCCCceeEEEEcccc
Q psy11395 422 NKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 422 ~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
++..++..-+||.|=+-..+|++-..
T Consensus 470 k~GD~Vl~iaFGsGft~~sav~~~~~ 495 (521)
T PLN02854 470 SAGDRVWQIAFGSGFKCNSAVWKALR 495 (521)
T ss_pred CCCCEEEEEEEchhhhhhheeeEEec
Confidence 12246788899998888888887543
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=89.23 Aligned_cols=57 Identities=26% Similarity=0.631 Sum_probs=54.1
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l 696 (831)
+.++.++|+++++|+++|+||+.+++++..|+++||+.++..++|++||+++|++||
T Consensus 11 l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 11 LGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred HCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 356678999999999999999999999999999999999999999999999999986
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=111.64 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH---HHcCCCC-
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS---YFYNFTG- 173 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris---~~lgl~G- 173 (831)
..-|+.+|+..||+++|+++++|+ -|++|+.+..+. ....|..|. ..+|.+.
T Consensus 53 ~~tmA~~AA~~aL~~agid~~~Id----llivaTeT~~d~--------------------~ps~A~~v~~ll~~LG~~~~ 108 (459)
T PLN02577 53 VISMSLTVVKSLLEKYNIDPKQIG----RLEVGSETVIDK--------------------SKSIKTFLMQLFEESGNTDI 108 (459)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCchHHHHHHHHHHhCCCCc
Confidence 457999999999999999999887 588898766541 112344443 4556644
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCC--CEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGES--SQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~--d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+++-+..+|++++.||..|.++|++|.. +.+||+|+|....-. + + + + ..-|+||+|
T Consensus 109 ~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~--------~---~-~--e--------~t~GdGA~A 166 (459)
T PLN02577 109 EGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAE--------G---P-A--R--------PTGGAGAVA 166 (459)
T ss_pred EEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccC--------C---C-C--C--------CCCCcceEE
Confidence 7888999999999999999999999985 999999999832110 0 0 0 1 112999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCC-----------------HHHHHHHHHHHHHHc------CCCC
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-----------------PIQQSYLLQKAWNES------NIDV 308 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~-----------------~~~~~~~i~~al~~A------gl~~ 308 (831)
+||.+.. .+ -+-....|..+.+ ...+..|+ .+....++++.+++. |+.+
T Consensus 167 ~lv~~~~----~~-~l~~~~~g~~~~~---~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g~~~ 238 (459)
T PLN02577 167 MLVGPNA----PI-VFESKYRGSHMAH---VYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSI 238 (459)
T ss_pred EEEccCC----Cc-eeecccccccCcc---cchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccCCCH
Confidence 9997521 10 0111112222210 00011111 123344555555555 8899
Q ss_pred CCcceEEecCCCCCCC
Q psy11395 309 RSLGYIECHGTGTKLG 324 (831)
Q Consensus 309 ~dId~ie~HgtGT~~g 324 (831)
+|+||+..|-..|+++
T Consensus 239 ~d~d~~vfHqP~~km~ 254 (459)
T PLN02577 239 SDADYFVFHAPYNKLV 254 (459)
T ss_pred HHcCEEEecCCccchh
Confidence 9999999998888765
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=98.72 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
...|+.+|+.+||++||+++++++ .+|+|...+. .+.++.++..||+ |.+-
T Consensus 54 E~~L~~EA~~~AL~kAGI~~~DID----~i~vGdL~nQ-----------------------~ipssfvar~LGI--P~~g 104 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKLRKEDIQ----FFLAGDLMNQ-----------------------ITPTSFAARTLGI--PYLG 104 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCC-----------------------cCcHHHHHHHhCC--Cccc
Confidence 457999999999999999999988 5777765311 1234467777774 7899
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
|.+|||++..||..|+.+|++|.+|.+||+-+.-..+... +.++=...|..||.... = .--|+|++||.+.
T Consensus 105 V~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aEr-----qfR~P~eyG~Qrp~taq--w--TvTgaga~~l~~~ 175 (334)
T PRK12404 105 LFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEK-----QFRYPTEYGGQKPPTAQ--W--TVTGAGAAILSKT 175 (334)
T ss_pred eeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhh-----hccCcccccCcCCCccc--E--EEEceEEEEEecC
Confidence 9999999999999999999999999999998765433221 11222223455554322 2 2347788888653
Q ss_pred hhhhhCCCceEEE----EeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 258 SVALNDHDNIYAI----IKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 258 ~~A~~~g~~i~a~----I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
..+-+|... |..+++. |... +-+--..+....|.+-+++.|.+|+|-|.|-+-.-|
T Consensus 176 ----~~~~~i~~~T~Gkv~D~g~~-d~~n--MGaaMAPAA~dti~~h~~d~~~~~~~yDlI~TGDLg 235 (334)
T PRK12404 176 ----GDGPRVTSATIGRVVDMGLT-DPFN--MGGAMAPAAVDTIEAHLRDRQIDASYYDLIVTGDLG 235 (334)
T ss_pred ----CCCceEEEEEEEEEEecCCC-Cccc--chhhhhHHHHHHHHHHHHHhCCChhhccEEEEcchH
Confidence 233344332 2333321 1110 111113456788999999999999999999965444
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=104.44 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG- 173 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G- 173 (831)
......++..|+.+||+++|+++++|+ -+++ +++..+ ....++.+|...||++.
T Consensus 169 ~~ea~~l~~~A~~~aL~kaGi~p~dID----~LVv-~cS~~~--------------------~~PSlaa~V~~~LGlr~~ 223 (502)
T PLN02377 169 REEAEQVMFGALDNLFANTNVNPKDIG----ILVV-NCSLFN--------------------PTPSLSAMIVNKYKLRGN 223 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEE-ECCCCC--------------------CCCcHHHHHHHHhCCCCC
Confidence 344668899999999999999998887 3444 443332 12347888999999974
Q ss_pred -Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCC----cceecC
Q psy11395 174 -PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNAD----GYVRGE 247 (831)
Q Consensus 174 -ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~----G~v~gE 247 (831)
.++.++ .||++++.||..|.+.|++|....|||.++|.+..... ++.+.. ...+|+
T Consensus 224 v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~------------------~~d~~s~lv~n~LFgD 285 (502)
T PLN02377 224 IRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWY------------------FGNKKSMLIPNCLFRV 285 (502)
T ss_pred CeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEeccccccC------------------CCCCccccccceeecc
Confidence 788899 69999999999999999999999999999998532110 111122 356799
Q ss_pred ceEEEEecch
Q psy11395 248 GAVMLMLKPL 257 (831)
Q Consensus 248 GaaavvL~~~ 257 (831)
||||+||++.
T Consensus 286 GAaAvlLs~~ 295 (502)
T PLN02377 286 GGSAVLLSNK 295 (502)
T ss_pred ccEEEEEecc
Confidence 9999999863
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-09 Score=139.45 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=58.8
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccccCCCCCCCCceeeccc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLICKKM 829 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 829 (831)
.++||||||+||||++.++++||++|.+|+++|+++|++||+.+.||++++. .++++|++|-
T Consensus 6 ~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~-~~~~~~~~~g 67 (2582)
T TIGR02813 6 DMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKS-EADKSYCKRG 67 (2582)
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCcccc-ccCCccccee
Confidence 3789999999999999999999999999999999999999999999999998 8999998873
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-08 Score=107.24 Aligned_cols=94 Identities=24% Similarity=0.368 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
.+.|+.+++.++|+++|+++++++ .|++|+...... ...++..++...|| +-|.
T Consensus 26 ~~~L~~~a~~~al~~~~i~~~~Id----~v~~G~~~~~~~--------------------g~~~ar~~~l~aGl~~~vp~ 81 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDPEDID----AVIVGNVLQEGE--------------------GQNIARQAALAAGLPESVPA 81 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHGGGEE----EEEEE-SSSCTT--------------------TCHHHHHHHHHTTS-TTSEE
T ss_pred HHHHHHHHHHHHHHhcccchhhhh----hcCccccccccc--------------------chhhhhhhhhhcccccccce
Confidence 456889999999999999999988 688887643221 22356677777887 3499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEecccccccc
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHP 215 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p 215 (831)
++|+.+|+||+.||++|++.|++|+.|++||||+|.|...
T Consensus 82 ~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~ 121 (264)
T PF00108_consen 82 TTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRV 121 (264)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTS
T ss_pred eeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccccc
Confidence 9999999999999999999999999999999999997554
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-06 Score=92.48 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCC--c
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGP--S 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gp--s 175 (831)
..-|+++|+.++|.++++++.++. .|++|+.+.-|.. =..+..|+..||+.-- +
T Consensus 51 ~vTmaveAA~~~l~r~~~D~~~Ig----~v~vgTES~~d~~--------------------K~~at~v~~~lg~~~~~~~ 106 (377)
T COG3425 51 AVTMAVEAARNALKRADIDPSKIG----AVIVGSESGPDAV--------------------KPTATIVAEALGLNPSARA 106 (377)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCc----eEEEecCCCcccc--------------------cchHHHHHHHhCCCCceeh
Confidence 456899999999999999988876 6999998766531 1256678889998643 3
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+-+..||-++..||+.|..++.+|..+.+||.|.|....- + + +.--+.-|.|++|+|+.
T Consensus 107 ~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~-------------~-~-------~~~E~t~GAGavA~lIg 165 (377)
T COG3425 107 ADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA-------------P-G-------DALEYTAGAGAVAFLIG 165 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC-------------C-C-------cccCccCCCceEEEEEc
Confidence 3377899999999999999999999999999999973210 0 0 01112358899999997
Q ss_pred chhhhhhCCCceEEEEeeeeeccCC-C----CCCCCCCC----------HHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 256 PLSVALNDHDNIYAIIKGSAITHNG-Q----SNGLTAPN----------PIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~~~~dg-~----~~~~~~p~----------~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
. +.++.+++.+.+....- . ..+...|. ......+.+..+++.|++++|.||+..|-+.
T Consensus 166 ~-------n~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~ 238 (377)
T COG3425 166 K-------NPPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPN 238 (377)
T ss_pred c-------CCCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCChhhhCeEEecCCC
Confidence 4 24566666565543321 1 11112222 1456677788889999999999999999888
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCC-CCcccchhhhHHHHHHHHHH
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKT-NLGHLEAASGITGILKIILC 380 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~-~iGH~~~AsG~~~lik~~l~ 380 (831)
+++. ..++..+.-.. ..+.-|-+-+ ++|.+..+|...+|+.++-.
T Consensus 239 ~k~~----~ka~k~l~~~~-----------e~v~~~l~~~~~vGN~YtgS~~L~Las~L~~ 284 (377)
T COG3425 239 GKFP----KKAAKSLGFKE-----------EQVKPGLVYPQRIGNTYTGSLLLGLASLLDN 284 (377)
T ss_pred CchH----HHHHHHhCccH-----------hhcCccchhhhhcCcccchhHHHHHHHHHhh
Confidence 8653 33333332110 1122222223 68999999999999988653
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-07 Score=103.51 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G 173 (831)
..+....++.+|+.+||+++|+++++++ -+++.++..+ ....++.+|...||++.
T Consensus 144 ~~~ea~~la~~Aa~~aL~~agi~p~dId----~lIv~tst~~---------------------~~Pslaa~V~~~lGlr~ 198 (478)
T PLN02932 144 SRKETEEVIIGAVDNLFRNTGISPSDIG----ILVVNSSTFN---------------------PTPSLSSILVNKFKLRD 198 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEccCCC---------------------CCCcHHHHHHHHhCCCC
Confidence 3445678999999999999999998887 4666665431 12347889999999963
Q ss_pred --Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 174 --PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 174 --ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
.++.|+ .||++++.||..|.+.|++|....|||.++|.+...... +..+. ..-....+|||+|
T Consensus 199 ~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~~------------~d~r~--~l~t~~LFgDGAA 264 (478)
T PLN02932 199 NIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNLYL------------GNNKS--MLVTNCLFRIGGA 264 (478)
T ss_pred CceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeecccccCC------------Ccchh--hhccceeecccce
Confidence 788898 899999999999999999999999999999985432110 00000 0012456899999
Q ss_pred EEEecch
Q psy11395 251 MLMLKPL 257 (831)
Q Consensus 251 avvL~~~ 257 (831)
|+||+..
T Consensus 265 AvlLs~~ 271 (478)
T PLN02932 265 AILLSNR 271 (478)
T ss_pred EEEEecc
Confidence 9999864
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.2e-08 Score=89.81 Aligned_cols=121 Identities=21% Similarity=0.167 Sum_probs=77.7
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
+|+|+|.+++......... ..+...+++++|+++|++++|||++|.|...+. .++..+. .++-..
T Consensus 2 ~pla~i~~~~~~~~~P~~~-----~~~p~~A~~~al~~ag~~~~did~~Ei~EaFA~----~~l~~~~-~lg~~~----- 66 (123)
T PF02803_consen 2 KPLARIVGYASAGVDPEDM-----GLGPVPAARKALERAGLTPDDIDVIEINEAFAA----QVLAFLE-ALGLDP----- 66 (123)
T ss_dssp -ESEEEEEEEEEE--GGGG-----GGTHHHHHHHHHHHHT--GGGESEEEE--SBHH----HHHHHHH-HHTTGG-----
T ss_pred CeEEEEEEEEEEecCHHHh-----CchHHHHHHHHHHHhCCCccccchhhccchhhh----HHHHhhc-cccccc-----
Confidence 5788999988753221111 234467999999999999999999999966652 2332222 222100
Q ss_pred cccccccc-cccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccc
Q psy11395 346 IKNFYEKC-GLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKL 424 (831)
Q Consensus 346 ~~~~~~~~-~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~ 424 (831)
.++ +-|+..+ +|||.||||+..++.++.+|+++ ..
T Consensus 67 -----~~vN~~GG~la-~GHP~gasG~r~~~~l~~~L~~~--------------------------------------~~ 102 (123)
T PF02803_consen 67 -----EKVNPNGGALA-LGHPLGASGARLVVELAHQLRRR--------------------------------------GG 102 (123)
T ss_dssp -----GGBSTT--HHH-H-BHTTTHHHHHHHHHHHHHHHH--------------------------------------TT
T ss_pred -----cccCccccccc-ccccccccccchhhhhHHHHHHh--------------------------------------ch
Confidence 122 2344444 59999999999999999999762 12
Q ss_pred cEEEEcccCCCCceeEEEEcc
Q psy11395 425 RIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 425 r~a~v~sfG~gG~nahvil~~ 445 (831)
++.+++..+-||....+|||+
T Consensus 103 ~~gla~~~~ggG~g~a~ller 123 (123)
T PF02803_consen 103 RYGLAAICAGGGQGSAVLLER 123 (123)
T ss_dssp SEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhHHhcccceeeEEEEEEC
Confidence 567888888999999999985
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=97.22 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHc---CCCC-
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFY---NFTG- 173 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~l---gl~G- 173 (831)
..-|+++|+..+|+++|+++++|+ -|++|+.++++. ....+..|...| |++.
T Consensus 50 ~~tma~~AA~~lL~~a~id~~~Id----~Liv~TeS~~d~--------------------sps~a~~v~~lL~~lG~~~~ 105 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYNQIG----RLEVGTETIIDK--------------------SKSVKTVLMQLFEESGNTDV 105 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEECCCCCCC--------------------CCchHHHHHHHHHhcCCCCc
Confidence 457899999999999999998887 588888776652 112455555544 4433
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCC--CEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGES--SQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~--d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
.++-+..+|+++..||..|..+|++|.. +.|||.|.|..... ++... ...|+||+|
T Consensus 106 ~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~--------------~~~~~--------~t~GaGAvA 163 (454)
T TIGR01833 106 EGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYA--------------KGNAR--------PTGGAGAVA 163 (454)
T ss_pred eEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecccccc--------------CCCee--------eccccceEE
Confidence 6778999999999999999999999974 99999999983211 11111 134999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeeccCCC--CCCCCC--C------CHHHHHHHHHHHH-----------HHc----CC
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQ--SNGLTA--P------NPIQQSYLLQKAW-----------NES----NI 306 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~--~~~~~~--p------~~~~~~~~i~~al-----------~~A----gl 306 (831)
+||.+... +.-+. .+.++.+.+.+. ...... | +.....+++.++| +++ +.
T Consensus 164 mLv~~~~~-~~~~~----~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~~~a~~~~~~~~~~ 238 (454)
T TIGR01833 164 MLIGPNAP-IVFER----GLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKF 238 (454)
T ss_pred EEeccCcc-ceecC----ccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 99975332 11111 122333322221 111111 1 1223344433333 333 57
Q ss_pred CCCCcceEEecCCCCCCCC
Q psy11395 307 DVRSLGYIECHGTGTKLGD 325 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD 325 (831)
.++|++|+-.|-..++++-
T Consensus 239 ~~~dfd~~~fH~P~~km~~ 257 (454)
T TIGR01833 239 TLNDFDYMVFHSPYCKLVQ 257 (454)
T ss_pred CHhHcCEEeccCCcccHHH
Confidence 8899999999998887653
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-07 Score=102.46 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=95.9
Q ss_pred CCCCCCCCChhh--hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcc
Q psy11395 80 FDAPFFKISPIE--AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNS 157 (831)
Q Consensus 80 FD~~~f~i~~~e--a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (831)
+-+..+.++|.. .........++..|+.+||+++|+++++++ -+++.++ .++ .
T Consensus 156 ~p~~~~~~~~~~~~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DID----iLIv~~S-~~~--------------------~ 210 (511)
T PLN02192 156 LPEAVLNVPPNPCMAEARKEAETVMFGAIDQLLAKTSVKPKDIG----ILIVNCS-LFN--------------------P 210 (511)
T ss_pred CChhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEECC-CCC--------------------C
Confidence 444444454432 112234567888999999999999998887 3444432 222 1
Q ss_pred hhHHHHHHHHHcCCCC--Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCc
Q psy11395 158 MAVLANRISYFYNFTG--PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICK 234 (831)
Q Consensus 158 ~~~~a~ris~~lgl~G--ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~ 234 (831)
...++.+|...+|++. .++.++ .|||+++.||..|.+.|+++....|||+++|.+. ...+
T Consensus 211 ~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S-~n~y---------------- 273 (511)
T PLN02192 211 TPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT-LNWY---------------- 273 (511)
T ss_pred CchHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc-ccCC----------------
Confidence 2357888999999974 789999 6999999999999999999999999999999854 1110
Q ss_pred cccCCCCc----ceecCceEEEEecch
Q psy11395 235 TFDKNADG----YVRGEGAVMLMLKPL 257 (831)
Q Consensus 235 ~Fd~~a~G----~v~gEGaaavvL~~~ 257 (831)
+..+++- ..+||||||+||++.
T Consensus 274 -~g~drs~lv~n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 274 -FGNDRSMLVSNCLFRMGGAAILLSNK 299 (511)
T ss_pred -CCCCHHHHhccccccccceEEEEecc
Confidence 0111111 357999999999863
|
|
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=75.81 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=54.9
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
+.+..+.+..+.+| .++|+||+..++++..++++||+.++...+++++|+.+++.||.+
T Consensus 16 l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~ 75 (78)
T PRK00982 16 LGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEK 75 (78)
T ss_pred HCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHH
Confidence 35667789999999 899999999999999999999999999999999999999999965
|
|
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=76.29 Aligned_cols=62 Identities=27% Similarity=0.401 Sum_probs=56.8
Q ss_pred cccCccccCCcccHhh-hCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFID-MGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~-lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.+.++.|.++.+|.+ +|+||+..++++..|+++||++++...+++.+|++++++||.+.+.
T Consensus 18 ~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 80 (82)
T CHL00124 18 LGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKIN 80 (82)
T ss_pred HCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 4567788999999987 9999999999999999999999999999999999999999976543
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=75.58 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=56.0
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhcc--CCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYD--YPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~--~pTi~~la~~l~~~~~ 701 (831)
+.+.++.++.+.+|+++|+||+.+++|+..|+++||++++...+.. ..|++.+++++.....
T Consensus 15 ~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 15 LEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred CCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 3456678999999999999999999999999999999999999975 8999999999976554
|
|
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-06 Score=75.75 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=51.6
Q ss_pred cCccccCCcccHh--hhCCChHHHHHHHHHHHhHhCCccCh---hhhccCCCHHHHHHHHHHH
Q psy11395 642 IKSEQFDDDAIFI--DMGLDSIIAVTWIRKINSQLDLSINS---TKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 642 l~~~~i~~~~~f~--~lG~dSl~a~~l~~~i~~~~g~~l~~---~~lf~~pTi~~la~~l~~~ 699 (831)
+.+++|+++.+|| +||+|||.+++|+..++++||++++. ..++.++||++|++||.+.
T Consensus 24 i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~~ 86 (89)
T PRK09184 24 VQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAAH 86 (89)
T ss_pred CCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHHh
Confidence 4788999999984 49999999999999999999999974 4467799999999999764
|
|
| >PRK05883 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-06 Score=75.18 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=56.8
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+..+.|.++.+| -++|.|||..++++..|+++||++++..++++++||++|++||....
T Consensus 27 l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~ 88 (91)
T PRK05883 27 LNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKV 88 (91)
T ss_pred hCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHc
Confidence 56788999999999 68999999999999999999999999999999999999999997643
|
|
| >PRK12449 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-06 Score=72.09 Aligned_cols=60 Identities=15% Similarity=0.347 Sum_probs=55.2
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+......|.++.+| -++|.||+..++|+..|+++||+.++..++++++|++++++||.+.
T Consensus 18 ~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 78 (80)
T PRK12449 18 RSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78 (80)
T ss_pred hCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 34566789999999 5999999999999999999999999999999999999999999764
|
|
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-06 Score=71.95 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=56.2
Q ss_pred ccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 641 QIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 641 ~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
.+..+.+..+.+|.+||+|||..++++..|+++||++++...+.+..|++++..|+.....
T Consensus 20 ~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~~ 80 (84)
T PRK05828 20 AVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELKK 80 (84)
T ss_pred CCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHHh
Confidence 4667888999999999999999999999999999999999999999999999999976543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-06 Score=120.31 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=57.0
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
|...|+.+.|+.+++||++|||||.+++|+.+|+++||+.|+..++|++||+++||++|...
T Consensus 1039 ~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1039 WADVLKVERVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred HHHHhCCCCCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 44467778999999999999999999999999999999999999999999999999998653
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=81.47 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=99.8
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh----hhccCCCCcccccCcchhHHH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS----DYIKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~a 162 (831)
|++.+.|+|.+..|++++++++++++. .+++ .+++++..|+...... -.....++|..|..+++|.++
T Consensus 23 lp~m~rRRls~~~rla~~~a~~~~~~~----~~~d----~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~a 94 (218)
T PF13723_consen 23 LPPMQRRRLSRLSRLALEAALECLAED----EQPD----AIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAA 94 (218)
T ss_pred CCHHHHcccCHHHHHHHHHHHHHHhcc----CCCC----cEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHH
Confidence 899999999999999999999999652 1222 6888888877543211 112336888889999999999
Q ss_pred HHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q psy11395 163 NRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214 (831)
Q Consensus 163 ~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~ 214 (831)
+.+++..+.++|+++|..+-.|...||..|+..|..| ++-+|++.+|..+.
T Consensus 95 G~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~p 145 (218)
T PF13723_consen 95 GYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPLP 145 (218)
T ss_pred HHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999 99999999998543
|
|
| >PRK05350 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.4e-06 Score=71.99 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=56.2
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+.++.|.++.+| .++|.||+..++++..|+++||++++..++.+.+|++++++|+.+..
T Consensus 19 ~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 19 FEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred hCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 46777899999995 89999999999999999999999999999999999999999997643
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-06 Score=121.90 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=74.7
Q ss_pred cccCCCCcccccccccCCCccc-------cccCCCCcc------ccCCC------ccchhhcccCccccCCcccHhhhCC
Q psy11395 598 RISLPTYPFSKYYYWLPKNNLN-------KKISNSDDT------QISNS------DDTQIKLQIKSEQFDDDAIFIDMGL 658 (831)
Q Consensus 598 ~v~LP~ypf~~~~~w~~~~~~~-------~~~~~~~~~------~~~~~------~~~~~~l~l~~~~i~~~~~f~~lG~ 658 (831)
+..||.|+.|....++..-|.. ++++..... ...+. ....|.-.|..+.|+.+++||++||
T Consensus 4191 ~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGg 4270 (4334)
T PRK05691 4191 RAELPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQLQSQAYLAPRNELEQTLATIWADVLKVERVGVHDNFFELGG 4270 (4334)
T ss_pred HhhCChhhcCcceeecccCCCCCCCcccHhhcCCCccccccccccCCCCCHHHHHHHHHHHHHhCCCcCCCCCchhhcCC
Confidence 4569999999877666544431 112111100 01111 1123445677889999999999999
Q ss_pred ChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 659 DSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 659 dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
|||.|++|+.++++.||+.|+..++|++||+.+||++|..
T Consensus 4271 ~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~ 4310 (4334)
T PRK05691 4271 HSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEG 4310 (4334)
T ss_pred cHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999963
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-06 Score=89.98 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=45.9
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccccCCCCCCCCceee
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLIC 826 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~ 826 (831)
++|+|+||+|.+|++.++++||++|.+|+++++++|+ ||+...||+.+.. ..++++.
T Consensus 2 ~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~-r~~~~~~~~~~~~-~~~~~~~ 58 (254)
T PF00109_consen 2 RRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPE-RWDPSDYYDPPSR-VAGEIDD 58 (254)
T ss_dssp S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCS-SSCHTTSTTSSCS-EEECBSS
T ss_pred CEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeecc-ccccccccccCCc-ccccccc
Confidence 5899999999999999999999999999999999999 9999999865544 4455443
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-06 Score=101.61 Aligned_cols=58 Identities=21% Similarity=0.447 Sum_probs=54.6
Q ss_pred ccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 644 ~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
.+.|+.+++||+||+|||++++|.++|++.||+.|+.+.+|+|||+.+|+++|.+.+.
T Consensus 563 ~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 563 PWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred hhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 4569999999999999999999999999999999999999999999999999987654
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.9e-06 Score=69.50 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=55.6
Q ss_pred ccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 641 QIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 641 ~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
.+..+.|.++.+|.+||.|||..++++..++++||+++|...+-+-.|+++++.||.+.
T Consensus 20 ~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~ 78 (79)
T PRK07117 20 DLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAK 78 (79)
T ss_pred CCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999753
|
|
| >TIGR00517 acyl_carrier acyl carrier protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.4e-06 Score=69.57 Aligned_cols=59 Identities=24% Similarity=0.448 Sum_probs=54.2
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
+.+..+.+..+.+|+ ++|+||+..++|+..|+++||+.++..++.+..|++++++||.+
T Consensus 16 ~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~ 75 (77)
T TIGR00517 16 LNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEE 75 (77)
T ss_pred HCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHh
Confidence 356677899999985 79999999999999999999999999999999999999999964
|
S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.9e-06 Score=106.80 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=56.7
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
|...|..+.++.+++||++|+|||++++|..+|++.||+.++..++|++||+++|+++|.+.
T Consensus 987 ~~~~l~~~~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 987 FSSLLGCDVVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred HHHHhCCCCCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 33456667999999999999999999999999999999999999999999999999999754
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.1e-06 Score=116.43 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=56.4
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
|...|..+.|+.+++||++|||||.+++|+.+|++.||++|+..++|++||+++||+++..
T Consensus 3614 ~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3614 WADVLGVEQVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred HHHHhCCCCCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 3445677889999999999999999999999999999999999999999999999999964
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.9e-05 Score=78.39 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCC
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGP 174 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gp 174 (831)
+.....+..++.++||+.+++.+++++ .|++.++++- ....+=.||...|||.--
T Consensus 73 ie~a~~l~v~a~r~aL~~~~l~pedId----~vv~vtsTG~---------------------~~Ps~dari~~~Lgl~p~ 127 (356)
T COG3424 73 IEEAVPLGVDALRRALDGSPLRPEDID----AVVTVTSTGL---------------------ATPSLDARIVGELGLSPD 127 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHCc----EEEEEeeccc---------------------cCCChhHHHHhhcCCCCc
Confidence 445667999999999999999998887 4555554332 222344577888888521
Q ss_pred ---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc----eecC
Q psy11395 175 ---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY----VRGE 247 (831)
Q Consensus 175 ---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~----v~gE 247 (831)
.-.-.-||+.+..+|..|...++..--..++|..+|++.-... ..|.....+ ++||
T Consensus 128 ~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELCSLt~~-----------------~~d~t~s~lVgtaLF~D 190 (356)
T COG3424 128 TRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELCSLTYV-----------------FADDTKSNLVGTALFGD 190 (356)
T ss_pred cceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeeeeeeee-----------------cCCCCcccceeeeeecC
Confidence 1124578999999999999999999999999999998642211 111111122 4899
Q ss_pred ceEEEEecchhhhhhCCCce-EEE--------------EeeeeeccCCCCCC--CCCCC--HHHHHHHHHHHHHHcCCCC
Q psy11395 248 GAVMLMLKPLSVALNDHDNI-YAI--------------IKGSAITHNGQSNG--LTAPN--PIQQSYLLQKAWNESNIDV 308 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i-~a~--------------I~g~~~~~dg~~~~--~~~p~--~~~~~~~i~~al~~Agl~~ 308 (831)
|++|+|+.-...+. +..+ ... +-|+.++++|...- ..-|+ .......+...|..-|++.
T Consensus 191 G~AA~vv~gd~~~~--~~~~~~p~i~~s~StL~~dse~~Mgwdv~d~G~~~vlSrdlp~lIe~~l~~~V~~fL~~~~ls~ 268 (356)
T COG3424 191 GAAAVVVSGDRRAE--GKRPLRPDILDSFSTLYPDSEDIMGWDVGDQGLKVVLSRDLPNLIESYLAPNVTTFLATHGLSI 268 (356)
T ss_pred CeeEEEEecccccc--ccCCCCceecccccccCCccccccceeecCCcEEEEEcCchhHHHHHHhhhhHHHHHHHcCCch
Confidence 99999997522221 1111 112 34455555554321 11222 3456777889999999999
Q ss_pred CCcceEEecCCCCCCCCHHH
Q psy11395 309 RSLGYIECHGTGTKLGDPIE 328 (831)
Q Consensus 309 ~dId~ie~HgtGT~~gD~~E 328 (831)
+||+.+-+|=-|-++-|.+|
T Consensus 269 ~dI~~w~~HPGG~KVida~~ 288 (356)
T COG3424 269 EDIEAWVVHPGGPKVIDAYE 288 (356)
T ss_pred hhhceeeeCCCCchHHHHHH
Confidence 99999999977766655543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=114.10 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=56.4
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
|...|..+.|+.+++||++|||||.+++|+.+++++||+.|+..++|++||+.+||+++..
T Consensus 1647 w~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~ 1707 (4334)
T PRK05691 1647 WREVLGLPRVGLRDDFFALGGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVAR 1707 (4334)
T ss_pred HHHHhCCCCCCCCCchHHhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhh
Confidence 4445677789999999999999999999999999999999999999999999999999864
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=67.41 Aligned_cols=52 Identities=29% Similarity=0.490 Sum_probs=49.6
Q ss_pred cCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 647 FDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 647 i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
++.+.+|+++|+||+.++++...+++.|++.++...+|++||+..+++++.+
T Consensus 33 ~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~ 84 (86)
T smart00823 33 IDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAA 84 (86)
T ss_pred CCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999865
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-05 Score=84.96 Aligned_cols=120 Identities=11% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..-+..|+.+||+++|+++++++ -|++ ++++.+ ....++.+|...+|++. ..+
T Consensus 135 em~i~~A~~~aL~~aGi~p~dID----~LIv-s~T~~~--------------------~~Pslaa~l~~~LGLr~~v~~~ 189 (466)
T PLN00415 135 ELVIFGALNSLFKKTGIEPREVG----IFIV-NCSLFN--------------------PNPSLSSMIVNRYKLKTDVKTY 189 (466)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEE-ECcCCC--------------------CCchHHHHHHHHhCCCCCceEE
Confidence 33444477788999999998886 2333 222221 12346778889999972 567
Q ss_pred cccc-ccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 177 LIDT-ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 177 tv~t-aCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
.|.. ||++++.+|..|.+.++++....+||.++|.+.... + ..+. +.. -=....+||||||+||.
T Consensus 190 dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S~~~-~---------~~~d--r~~--lv~n~LFgDGAAAvlLs 255 (466)
T PLN00415 190 NLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSM-Y---------RGND--RSM--LVPNCLFRVGGAAVMLS 255 (466)
T ss_pred EeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEecccccc-c---------CCCc--HhH--hccceeecccceEEEEe
Confidence 7886 999999999999999999999999999999843211 0 0000 000 00124679999999998
Q ss_pred ch
Q psy11395 256 PL 257 (831)
Q Consensus 256 ~~ 257 (831)
..
T Consensus 256 ~~ 257 (466)
T PLN00415 256 NR 257 (466)
T ss_pred cC
Confidence 64
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=113.99 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=56.1
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
|...|..+.|+.+++||++|||||++++|+++++++||+.|+..++|++||+++|++.+..
T Consensus 2525 w~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~ 2585 (5163)
T PRK12316 2525 WQAVLKVEQVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLES 2585 (5163)
T ss_pred HHHHhCCCccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhh
Confidence 3445667889999999999999999999999999999999999999999999999999864
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=91.52 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
+.+|+|+||+|++|++.++++||+.|.+|+++|+++|+.||+.+.|+
T Consensus 5 ~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~ 51 (437)
T PLN02836 5 TRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSED 51 (437)
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhcccccc
Confidence 47899999999999999999999999999999999999999877665
|
|
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=68.14 Aligned_cols=60 Identities=22% Similarity=0.461 Sum_probs=54.4
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+......+..+..|. ++|+|||.+++|+..|+++||+++|...+....|+++++.|+.+.
T Consensus 18 l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~ 78 (80)
T COG0236 18 LGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEEL 78 (80)
T ss_pred hCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHh
Confidence 455567889999997 599999999999999999999999999999999999999999753
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.6e-05 Score=78.30 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=120.2
Q ss_pred CCCEEEEcccccccCCC--CCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCCh
Q psy11395 12 NKDIAIIGLACYLPKGI--NTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISP 89 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~--~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~ 89 (831)
.++|.++-++|.-|... -+.+.|++....-.. +. ++-. .+..+- ....| +.+-..+-+.++.++|
T Consensus 6 ~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~-f~---~~sl----~F~~kI----lerSG-lG~eTy~P~~~~~~p~ 72 (290)
T PF08392_consen 6 PRPVYLVDFACYKPPDELRVSREEFIEHARRCGR-FD---EESL----DFQRKI----LERSG-LGDETYLPPALHEIPP 72 (290)
T ss_pred CCCEEEEeeeecCCCcccccCHHHHHHHHHhccc-CC---hhHH----HHHHHH----HHhcC-CCccccCCcccccCCC
Confidence 46899999999999642 256888887764221 11 1000 000000 00111 1111222333344444
Q ss_pred h--hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHH
Q psy11395 90 I--EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISY 167 (831)
Q Consensus 90 ~--ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~ 167 (831)
. -.+..+....++-.++.++|+.+|+.|++++ .+++.++.. +....++.+|..
T Consensus 73 ~~s~~~a~~Eae~v~f~av~~LL~ktgv~p~dId----iLVvncs~f---------------------~ptPSLsamIvn 127 (290)
T PF08392_consen 73 DPSLAAAREEAEMVIFGAVDDLLAKTGVKPSDID----ILVVNCSLF---------------------NPTPSLSAMIVN 127 (290)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEECcCC---------------------CcCCcHHHHHHH
Confidence 3 1112244566788899999999999998877 355444321 123357788899
Q ss_pred HcCCCCCccc---cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcce
Q psy11395 168 FYNFTGPSLL---IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYV 244 (831)
Q Consensus 168 ~lgl~Gps~t---v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v 244 (831)
.||++.-..+ ...|||+|+.+|.+|.+.|+...-..|||..+|.+.. ..+.+-.+..+++ ...
T Consensus 128 r~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~s~-~~Y~G~~rsmlv~-------------NcL 193 (290)
T PF08392_consen 128 RYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENISA-NWYRGNDRSMLVS-------------NCL 193 (290)
T ss_pred HhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeeccc-ccccCCcHHHhhc-------------ccc
Confidence 9999874444 4578999999999999999999999999999998543 2232222222222 245
Q ss_pred ecCceEEEEecchh
Q psy11395 245 RGEGAVMLMLKPLS 258 (831)
Q Consensus 245 ~gEGaaavvL~~~~ 258 (831)
+.+|++|++|.+..
T Consensus 194 Fr~GgAAvLLSn~~ 207 (290)
T PF08392_consen 194 FRMGGAAVLLSNKP 207 (290)
T ss_pred ccCCceeEEeecCc
Confidence 78999999998654
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.1e-05 Score=69.70 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=46.8
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
-|..+|++.+.||+.|..+|++|.++.+||.+.|........ ......+++|||++++||++
T Consensus 2 Di~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~~~~------------------~~~~~~~~~gDgAaA~vl~~ 63 (80)
T PF08545_consen 2 DINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRIVDR------------------TDRQTAFIFGDGAAAVVLSR 63 (80)
T ss_dssp EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGGSHT------------------THHHHHTTB-EEEEEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccccccc------------------cccCcceeecchheEEEEEe
Confidence 478899999999999999999999999999999985331110 00122347899999999997
Q ss_pred h
Q psy11395 257 L 257 (831)
Q Consensus 257 ~ 257 (831)
.
T Consensus 64 ~ 64 (80)
T PF08545_consen 64 D 64 (80)
T ss_dssp E
T ss_pred c
Confidence 5
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.1e-05 Score=114.39 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=56.4
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
|...|..+.|+.+++||++|||||.+++|+.+|+++||++|+..++|++||+++||++|..
T Consensus 5081 ~~~vL~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 5141 (5163)
T PRK12316 5081 WAEVLQLERVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAA 5141 (5163)
T ss_pred HHHHhCCCCCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHh
Confidence 3345677899999999999999999999999999999999999999999999999999964
|
|
| >PRK08172 putative acyl carrier protein IacP; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=5e-05 Score=65.76 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=58.1
Q ss_pred hcccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 639 KLQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 639 ~l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
.+.+..+.|.++.+| -++|.|||..++|+..|+++||++++..++.+..|++++.+||.+.+.
T Consensus 16 ~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~ 79 (82)
T PRK08172 16 CIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLE 79 (82)
T ss_pred HHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHh
Confidence 357788999999999 789999999999999999999999999999999999999999987543
|
|
| >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6e-05 Score=61.49 Aligned_cols=56 Identities=25% Similarity=0.493 Sum_probs=51.3
Q ss_pred CccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 643 KSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 643 ~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
..+++++++|+.++|+|||.+|+|..+.+++ |..|+...+.++||+.+.-+.|...
T Consensus 14 ~~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~ 69 (74)
T COG3433 14 SVEELDDQENLIDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTR 69 (74)
T ss_pred ChhhcCchhhHHHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhc
Confidence 5788999999999999999999999999876 8899999999999999998887543
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=97.58 E-value=6e-05 Score=86.25 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=42.8
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
++|+|+||+|++|++.++++||++|.+|+++++++|.+||+...+|
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~ 46 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYY 46 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccc
Confidence 4799999999999999999999999999999999999999877664
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=64.06 Aligned_cols=59 Identities=14% Similarity=0.361 Sum_probs=51.5
Q ss_pred ccCc-cccCCcccHhh-hCCChHHHHHHHHHHHhHhCCccChhhh--ccCCCHHHHHHHHHHH
Q psy11395 641 QIKS-EQFDDDAIFID-MGLDSIIAVTWIRKINSQLDLSINSTKI--YDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 641 ~l~~-~~i~~~~~f~~-lG~dSl~a~~l~~~i~~~~g~~l~~~~l--f~~pTi~~la~~l~~~ 699 (831)
.+.. +.+.++.+|++ +|+||+.+++|+..|+++||++++..++ -..-|++.++.||.+.
T Consensus 19 ~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~ 81 (86)
T PRK07639 19 ELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEEL 81 (86)
T ss_pred CCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHh
Confidence 3443 67999999955 9999999999999999999999999987 4778999999999764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.3e-05 Score=97.54 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=54.4
Q ss_pred cCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 642 l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+..+.|+.+++||++|+|||++++|+.+|++.||+.|+..++|++||+.+|+++|....
T Consensus 863 ~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 863 NRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999996543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00018 Score=74.10 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=84.4
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHH
Q psy11395 89 PIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYF 168 (831)
Q Consensus 89 ~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~ 168 (831)
.+...+..-...|+.+++.+||+++|+++.+|. .+++-++++- ....+-.++...
T Consensus 91 ~R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIt----hlv~vs~TG~---------------------~~PglD~~l~~~ 145 (226)
T PF00195_consen 91 ERNALYAEEAPPLAEEAARKALAEAGLDPSDIT----HLVTVSCTGI---------------------AAPGLDARLINR 145 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGEC----EEEEEESSSS---------------------ECS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc----eEEEEecCCc---------------------CCCchhHHHHhc
Confidence 344444555678999999999999999988876 5666555332 233455678889
Q ss_pred cCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc---
Q psy11395 169 YNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG--- 242 (831)
Q Consensus 169 lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G--- 242 (831)
|||+.- ......||..|+.+|..|....++..-..+||..+|++.-. |.. +.|.+.+.
T Consensus 146 LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElcsl~-----~~~-----------~~~~~~~~lv~ 209 (226)
T PF00195_consen 146 LGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELCSLH-----FQA-----------PNDDSLDNLVA 209 (226)
T ss_dssp HT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEGGGT-----HHH-----------CCTTSHHHHHH
T ss_pred CCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEeeEEE-----Eec-----------CCcccHHHHhH
Confidence 999642 23467899999999999999999998999999999986421 111 11111111
Q ss_pred -ceecCceEEEEecc
Q psy11395 243 -YVRGEGAVMLMLKP 256 (831)
Q Consensus 243 -~v~gEGaaavvL~~ 256 (831)
..+|||++++||..
T Consensus 210 ~aLFgDGaAA~vv~~ 224 (226)
T PF00195_consen 210 NALFGDGAAAVVVGA 224 (226)
T ss_dssp HHHB-EEEEEEEEES
T ss_pred HhhhcCCceEEEEcc
Confidence 24899999999863
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PTZ00171 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00022 Score=68.74 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=56.1
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.++.+.|.++.+|. ++|.|||..++|+..|+++||+.+|..++-+..|+.++++||.+..
T Consensus 83 l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 83 EKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred hCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 367788999999995 9999999999999999999999999999999999999999997643
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00032 Score=60.05 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=50.8
Q ss_pred cCccccCCcccHhhhC-CChHHHHHHHHHHHhHhCCccChhhhcc--CCCHHHHHHHHHH
Q psy11395 642 IKSEQFDDDAIFIDMG-LDSIIAVTWIRKINSQLDLSINSTKIYD--YPTLNKFFKFIMS 698 (831)
Q Consensus 642 l~~~~i~~~~~f~~lG-~dSl~a~~l~~~i~~~~g~~l~~~~lf~--~pTi~~la~~l~~ 698 (831)
.....+..+.+||+.| +||+.+++|+..|+++||++++..++-. ..|+..+++||.+
T Consensus 17 ~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~ 76 (78)
T PRK05087 17 EDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEE 76 (78)
T ss_pred CChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHH
Confidence 3445677899999998 5999999999999999999999998887 9999999999864
|
|
| >KOG1748|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00016 Score=66.61 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=55.3
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
..+.++.+..+.+|| |||+|||..|+++..|+++||+++|..+--+.-|+++.++||.+.
T Consensus 66 dki~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~ 126 (131)
T KOG1748|consen 66 DKIDPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADK 126 (131)
T ss_pred hcCCccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhc
Confidence 467888899998885 999999999999999999999999999999999999999999764
|
|
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0093 Score=63.11 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
..+|+.+++..||+.||+.+++++ ++++.- . +.+ ...++..+..|++ |-+-
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId-----~~~aGD---L---lnQ----------------~i~s~f~ar~l~i--Pf~G 101 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDID-----YLFAGD---L---LNQ----------------IISSSFAARDLGI--PFLG 101 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-S-----EEEEEE---T---TCC----------------CCHHHHHHHHHT----EEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCe-----EEEehh---h---hhh----------------hHHHHHHHHhcCC--Cccc
Confidence 568999999999999999998887 555431 1 111 1234445555554 7888
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
+-.|||++..+|.+|...+..|-+|.+|++-+.-....... .++=..-|..||-.. -..--|+|++||.+.
T Consensus 102 lygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQ-----fR~P~EyG~Qrp~tA----qwTVTGaGa~il~~~ 172 (329)
T PF07451_consen 102 LYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQ-----FRFPTEYGGQRPPTA----QWTVTGAGAAILSKE 172 (329)
T ss_dssp B--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHH-----T---GGGT----TT------EE--EEEEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhh-----ccCchhccCCCCCcc----cEEEeceEEEEEecC
Confidence 99999999999999999999999999999877654332211 111111233344221 123458888899753
Q ss_pred hhhhhCCCceEEEEeeeeeccCCCCCCCCCCC------HHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 258 SVALNDHDNIYAIIKGSAITHNGQSNGLTAPN------PIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 258 ~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~------~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
. ..++ |.+..+..- ...++..|+ ..+....|.+-|++.|.+|+|-|.|-+-.-|
T Consensus 173 ~------~~p~--It~~T~GkV-vD~G~~D~~nMGaAMAPAA~dTI~~h~~D~g~~p~dYDlIvTGDLg 232 (329)
T PF07451_consen 173 G------SGPR--ITHATIGKV-VDMGIKDPNNMGAAMAPAAADTIEQHFKDTGRSPDDYDLIVTGDLG 232 (329)
T ss_dssp --------SEE--EEEEE-----B-SS---TT-HHHHHHHHHHHHHHHHHHHCT--GGG-SEEEESS-H
T ss_pred C------CCcE--EEEEEEEEE-EEcCCCCcccchhhHhHHHHHHHHHHHHHhCCChhhcCeEEecchH
Confidence 2 2222 333222110 012355565 3456778999999999999999999965433
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00053 Score=78.62 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=41.0
Q ss_pred ceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 770 FEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 770 iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
|+|+||+|.+|++.++++||+.|.+|+++++++|.+||+...+|
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~ 44 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFY 44 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccc
Confidence 78999999999999999999999999999999999999876643
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PRK06508 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=58.23 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=51.4
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhc-----------cCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIY-----------DYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf-----------~~pTi~~la~~l~~~~ 700 (831)
+.+..+.|.++.+| -+||.|||..++|+..|+++||++++..++- .+-|++.+..++.+..
T Consensus 16 ~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~~~i~~~~ 88 (93)
T PRK06508 16 SDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLCAKIDELV 88 (93)
T ss_pred hCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Confidence 46778899999987 7899999999999999999999999998864 4447778887776544
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0015 Score=75.06 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWI 808 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~ 808 (831)
.+|+|+||+|++|.+.++++||++|.+|+++++++|..||+
T Consensus 4 ~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~ 44 (424)
T PRK06333 4 KRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVG 44 (424)
T ss_pred CCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCccccc
Confidence 58999999999999999999999999999999999988764
|
|
| >TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.003 Score=53.13 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=46.1
Q ss_pred ccCCcccHhhhCC-ChHHHHHHHHHHHhHhCCccChhhhc--cCCCHHHHHHHHH
Q psy11395 646 QFDDDAIFIDMGL-DSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFIM 697 (831)
Q Consensus 646 ~i~~~~~f~~lG~-dSl~a~~l~~~i~~~~g~~l~~~~lf--~~pTi~~la~~l~ 697 (831)
....++++|+.|+ ||+..++|+..|+++||+++|.+++- +..|+..+.+++.
T Consensus 18 ~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 18 KENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred ccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 4578999999998 99999999999999999999999875 5778888888764
|
This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein. |
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0018 Score=74.06 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=34.2
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIA 803 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p 803 (831)
.+|+|+||+|++|++.++++||++|.+|+++++++|
T Consensus 2 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~ 37 (411)
T PRK07314 2 RRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPIT 37 (411)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECC
Confidence 479999999999999999999999999999999886
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0023 Score=72.79 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
++|+|+||+++.|++.++++||++|.+|++++++++ ||+...|+
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~--~~~~~~~~ 44 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPIT--RFDPSGYP 44 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCC--ccccccCC
Confidence 369999999999999999999999999999999774 78766554
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.002 Score=73.42 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=36.5
Q ss_pred CceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCC
Q psy11395 769 DFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRW 807 (831)
Q Consensus 769 ~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~ 807 (831)
+|+|+||+|++|++.++++||++|.+|+++++++|..||
T Consensus 2 ~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~ 40 (406)
T cd00834 2 RVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDA 40 (406)
T ss_pred cEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccc
Confidence 699999999999999999999999999999999987653
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0028 Score=72.28 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=36.5
Q ss_pred CceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCc
Q psy11395 769 DFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDD 811 (831)
Q Consensus 769 ~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~ 811 (831)
+|+|+||+|++|++.++++||++|.+|++++++++ ||+...
T Consensus 2 ~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~--~~~~~~ 42 (407)
T TIGR03150 2 RVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPIT--RFDASD 42 (407)
T ss_pred cEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECC--cccccC
Confidence 69999999999999999999999999999999886 565443
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0032 Score=71.84 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=39.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||++++|.+.++++||++|.+|+++|++++ ||+...|+
T Consensus 4 ~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~--~~~~~~~~ 47 (414)
T PRK08722 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIE--HFDTTNFS 47 (414)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecC--ccccccCC
Confidence 689999999999999999999999999999999875 57765543
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0035 Score=71.69 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRW 807 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~ 807 (831)
.+|+|+||+++.|++.++++||+.|.+|+++|+++|..++
T Consensus 12 ~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~ 51 (418)
T PRK07910 12 PNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFV 51 (418)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhh
Confidence 6899999999999999999999999999999999987554
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0039 Score=73.13 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
.+|+|+||++++|.+.++++||++|.+|+++|++++ ||+...|
T Consensus 129 ~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~--~f~~~~~ 171 (540)
T PLN02787 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIE--RFDCSQF 171 (540)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccC--ccchhhC
Confidence 689999999999999999999999999999999885 6765544
|
|
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0083 Score=68.51 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=36.4
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTR 806 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r 806 (831)
++|+|+||++..|.+.++++||++|.+|+++|+++|..+
T Consensus 2 ~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~ 40 (410)
T PRK07103 2 DEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPG 40 (410)
T ss_pred CCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCccc
Confidence 579999999999999999999999999999999998654
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.033 Score=54.91 Aligned_cols=91 Identities=11% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCC---
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGP--- 174 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gp--- 174 (831)
..-|++.++..+|++.+++++++. -+++|+.++-.. .-.++..+...|++.|.
T Consensus 53 ~vTmA~nAa~~ll~~~~id~~~Ig----~l~vgTES~vD~--------------------sKs~~t~v~~ll~~s~~~~~ 108 (174)
T PF01154_consen 53 IVTMAANAAKPLLDRYNIDPDDIG----RLIVGTESGVDK--------------------SKSISTYVHQLLGLSGNPDC 108 (174)
T ss_dssp HHHHHHHHHHTTHHHHT-HHHHEE----EEEEE-SS-SBS--------------------SS-HHHHHHHHTTTTT-SSS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcc----EEEEeccccccc--------------------cccHHHHHHHHhCcCCCCce
Confidence 356889999999999888777665 377887643210 01256678888999653
Q ss_pred -ccccccccchHHHHHHHHHHHHHcCCCC--EEEEeccccc
Q psy11395 175 -SLLIDTACSSSLVAVHEALQSIKNGESS--QALVGGINLI 212 (831)
Q Consensus 175 -s~tv~taCsSsl~Al~~A~~~I~~G~~d--~alvgGv~~~ 212 (831)
.+-+-.||-++..||..|+.+|+++..| .+||.++|..
T Consensus 109 ~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA 149 (174)
T PF01154_consen 109 RGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIA 149 (174)
T ss_dssp EEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE
T ss_pred eeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecccc
Confidence 2456789999999999999999999765 9999999984
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.015 Score=66.20 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=35.7
Q ss_pred CceeecceeecCCCCC---HHHHHHHhhcCCcccccCCCCC
Q psy11395 769 DFEISKYIREIPKSNN---LKNFANNLLIGRNCVSKIASTR 806 (831)
Q Consensus 769 ~iaivg~~~r~pga~~---~~~~w~~l~~g~~~~~~~p~~r 806 (831)
+|+|+||++.+|.+.+ +++||+.|.+|+++++++|..|
T Consensus 2 ~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~ 42 (407)
T cd00828 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK 42 (407)
T ss_pred CEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc
Confidence 6999999999999999 9999999999999999998754
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.029 Score=63.98 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=37.2
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
.+|+|+||++..|.+.++++||+.|.+|+++|++++ ||+...+
T Consensus 2 ~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~--~~~~~~~ 44 (406)
T PRK08439 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKIT--LFDASDF 44 (406)
T ss_pred CCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCC--CccccCC
Confidence 479999999999999999999999999999999874 5554443
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.028 Score=64.06 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=35.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
.+|+|+||++..|.+.++++||+.|.+|+++|+++|+
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~ 38 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPE 38 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCc
Confidence 4799999999999999999999999999999999984
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.16 Score=44.68 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=52.7
Q ss_pred HHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHH
Q psy11395 301 WNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILC 380 (831)
Q Consensus 301 l~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~ 380 (831)
|+++|++++|||++-.|-...+. .+.+.+.++-.. .+. .... ..+||+.+|+-...|..+
T Consensus 1 L~~~g~~~~did~~i~hq~~~~~-----~~~~~~~lgi~~----------~~~-~~~~-~~~Gn~~sa~~~~~L~~~--- 60 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKKI-----LDSIAKRLGIPP----------ERF-PDNL-AEYGNTGSASIPINLADA--- 60 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHHH-----HHHHHHHHTS-G----------GGB-E-TH-HHH-B-GGGHHHHHHHHH---
T ss_pred CccccCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCcH----------HHH-HHHH-hccCcchhhhHHHHHHHH---
Confidence 68999999999999999655432 223444443211 111 1223 567999999877766554
Q ss_pred HhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 381 LKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 381 L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
++.+.+. +..++++-++|.|.+-+.++++
T Consensus 61 ~~~g~~~-----------------------------------~Gd~vl~~~~G~G~~~~~~~~~ 89 (90)
T PF08541_consen 61 LEEGRIK-----------------------------------PGDRVLLVGFGAGFSWGAAVLR 89 (90)
T ss_dssp HHTTSSC-----------------------------------TTEEEEEEEEETTTEEEEEEEE
T ss_pred HHcCCCC-----------------------------------CCCEEEEEEEEhhheeEEEEEE
Confidence 4443221 2246888899999999999885
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.11 Score=64.59 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=50.8
Q ss_pred cccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 645 ~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
..++++++||++|+||+.++++...+++.+.+..+...+|..+|+..+..-+...
T Consensus 614 ~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~ 668 (1032)
T KOG1178|consen 614 AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRI 668 (1032)
T ss_pred cccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhh
Confidence 4689999999999999999999999999999999999999999999998877543
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.076 Score=64.69 Aligned_cols=47 Identities=34% Similarity=0.656 Sum_probs=40.7
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccccC
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDF 815 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~~ 815 (831)
.++|+|.||++|+|..+++++||++|.+|.|-+++=|. ||. .+||+-
T Consensus 10 ~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~r-rW~-~G~ygL 56 (2376)
T KOG1202|consen 10 QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPR-RWE-AGLYGL 56 (2376)
T ss_pred CCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcc-ccc-ccccCC
Confidence 48999999999999999999999999999999997553 698 456654
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.14 Score=58.83 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=36.5
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWII 809 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~ 809 (831)
+..|+|.||++.-|...+.++||+.|.+|++.+++++ ||+.
T Consensus 10 ~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~--~~~~ 50 (425)
T PRK06501 10 RPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTIT--RFPT 50 (425)
T ss_pred CcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCC--cccc
Confidence 4679999999999999999999999999999999774 5554
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.23 Score=56.57 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIA 803 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p 803 (831)
.+|+|.||++..|-..++++||+.|.+|+++|++++
T Consensus 2 ~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~ 37 (406)
T PRK07967 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSP 37 (406)
T ss_pred CcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECC
Confidence 479999999999999999999999999999999775
|
|
| >PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.78 Score=39.43 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=34.9
Q ss_pred hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 655 DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 655 ~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.-.|||..++++-.++++|++.+|....-...|++++++|+.+...
T Consensus 43 ~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv~~r~ 89 (96)
T PF14573_consen 43 DRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVVQERQ 89 (96)
T ss_dssp SSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999999999976543
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=85.58 E-value=0.86 Score=51.77 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRW 807 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~ 807 (831)
.+|+|.||++.-|-..++++||+.|.+|+++ +.++..+|
T Consensus 6 ~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~ 44 (398)
T PRK06519 6 NDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETF 44 (398)
T ss_pred CCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccc
Confidence 6899999999999999999999999999997 44444333
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=85.20 E-value=0.79 Score=52.06 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCC-cccccCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGR-NCVSKIA 803 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~-~~~~~~p 803 (831)
.+|+|.||++--|-..++++||+.|.+|+ +.|++++
T Consensus 2 ~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~ 38 (392)
T PRK09185 2 TPVYISAFGATSALGRGLDAILAALRAGRASGMRPCD 38 (392)
T ss_pred CcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCc
Confidence 47999999999999999999999999999 9998876
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=83.51 E-value=0.97 Score=51.08 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=33.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
++|+|.||++.-|-.. +++||+.|.+|+++|++++.
T Consensus 2 ~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~ 37 (381)
T PRK05952 2 MKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQP 37 (381)
T ss_pred CeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCc
Confidence 5799999999999888 99999999999999997764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 831 | ||||
| 2hg4_A | 917 | Structure Of The Ketosynthase-acyltransferase Didom | 1e-80 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 6e-80 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 3e-68 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 7e-67 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 8e-22 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 2e-20 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 4e-20 | ||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 3e-19 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 3e-17 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 5e-17 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 1e-15 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 1e-15 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 1e-15 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 2e-15 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 6e-15 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 2e-14 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 3e-14 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 4e-14 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 1e-13 | ||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 8e-13 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 2e-12 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 6e-12 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 7e-11 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 1e-10 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 1e-10 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 1e-10 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 2e-10 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 9e-10 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 8e-08 | ||
| 2liu_A | 99 | Nmr Structure Of Holo-Acpi Domain From Cura Module | 4e-07 | ||
| 2l22_A | 212 | Mupirocin Didomain Acp Length = 212 | 7e-07 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 1e-06 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 3e-06 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 4e-06 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 7e-06 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 1e-05 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 1e-05 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 2e-05 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 2e-05 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 4e-05 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 4e-05 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 4e-05 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 6e-04 |
| >pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|2LIU|A Chain A, Nmr Structure Of Holo-Acpi Domain From Cura Module From Lyngbya Majuscula Length = 99 | Back alignment and structure |
|
| >pdb|2L22|A Chain A, Mupirocin Didomain Acp Length = 212 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 540 bits (1395), Expect = e-179
Identities = 159/514 (30%), Positives = 266/514 (51%), Gaps = 46/514 (8%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
++ I G++ LP+ L +FW L G ++ + + W + +
Sbjct: 5 EVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRR---WKAGLYGLPRR-----SGK 55
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD+ FDA FF + P +A +MDPQ R+LLE++++ I D G + L G++TGV++G SG
Sbjct: 56 LKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSG 115
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
S+ + LS + + +G A++ANR+S+F++F GPS+ +DTACSSSL+A+ A
Sbjct: 116 SETSEALSR-DPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAY 174
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
Q+I +G+ A+VGGIN++L P+ ++ + + GMLS +G CK FD +GY R EG V ++
Sbjct: 175 QAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVL 234
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNGQ-SNGLTAPN-PIQQSYLLQKAWNESNIDVRSL 311
L S+A +YA I + +G G+T P+ IQ+ L++ + + + S
Sbjct: 235 LTKKSLA----RRVYATILNAGTNTDGFKEQGVTFPSGDIQEQ-LIRSLYQSAGVAPESF 289
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
YIE HGTGTK+GDP E+ G+ + E +GS K+N+GH E ASG+
Sbjct: 290 EYIEAHGTGTKVGDPQELNGITR------ALCATRQ---EPLLIGSTKSNMGHPEPASGL 340
Query: 372 TGILKIILCLKNKKLPASLNFYNLNKNI-KLDDSHLYIIDHLQDWVKPKYENKLRIAGVS 430
+ K++L L++ +L+F++ N I L D L ++D + G++
Sbjct: 341 AALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPV-RG------GNVGIN 393
Query: 431 SFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIE 490
SFG GG+N H++L ++TLP + S +T + +++ +
Sbjct: 394 SFGFGGSNVHIILRPNTQPPPAPA--------PHATLPRLLRASGRTPEAVQKLLEQGLR 445
Query: 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVI 524
+ L S+ + + AM R V+
Sbjct: 446 HSQDLAFL--SMLNDIAAV--PATAMPFRGYAVL 475
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 567 bits (1462), Expect = e-178
Identities = 162/519 (31%), Positives = 266/519 (51%), Gaps = 44/519 (8%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
++ I G++ LP+ L +FW L G ++ + RW + +
Sbjct: 3 EVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTADDR-RW--KAGLYGLPRR-----MGK 53
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD+ FDA FF + +A +MDPQ R+LLE++++ I D G + + L G++TGV++G S
Sbjct: 54 LKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSS 113
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
SD + LS + + IG A++ANR+S+F++F GPS+ IDTACSSSL+A+ A
Sbjct: 114 SDASEALS-RDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
Q+I+ GE S A+VGG+N++L P++++ + K GMLS+DG C++FD GY R E V ++
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVL 232
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNG-QSNGLTAPNPIQQSYLLQKAWNESNIDVRSLG 312
L S+A +YA I + +G + G+T P+ Q L++ + + D SL
Sbjct: 233 LTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLE 288
Query: 313 YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGIT 372
YIE HGTGTK+GDP E+ G+ N + E +GS K+N+GH E ASG+
Sbjct: 289 YIEAHGTGTKVGDPQELNGIVN------ALCATRR---EPLLIGSTKSNMGHPEPASGVA 339
Query: 373 GILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSS 431
++K++L L++ +L+++ N I L D L ++D + G++S
Sbjct: 340 ALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPI-RG------GNVGINS 392
Query: 432 FGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEW 491
FG GG+N HV+L + +++ LP + S +T + +++ +
Sbjct: 393 FGFGGSNVHVILQPNSRPAPPPA--------QHAALPRLLQASGRTLEAVQTLLEQGLRH 444
Query: 492 LNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDL 530
+ + L AM R V+
Sbjct: 445 SRDLA----FVGMLNEIAAVSPVAMPFRGYAVLGGEAGS 479
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 513 bits (1323), Expect = e-169
Identities = 183/521 (35%), Positives = 282/521 (54%), Gaps = 32/521 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC P +++ FW+ + G I E R W + D + G L
Sbjct: 41 IAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRG-WEPDPDARL-------GGML 92
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
FDA FF ISP EA +MDPQQRI+LE+SW+ +E AG+D L GS TGVF G
Sbjct: 93 AAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTV 152
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY + V + G + +V + R++Y GP++ +DTACSS L A+H A++
Sbjct: 153 DYGPRPDEAPD-EVLGYVGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAME 211
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S++ E AL GG+ ++ P + G L+ DG CK F K ADG+ EGA +L+L
Sbjct: 212 SLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVL 271
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNIDVRSLGY 313
+ LS A + + A+++GSA+ +G SNGLTAP+ P QQ ++++A + + + Y
Sbjct: 272 QRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQR-VIRRALENAGVRAGDVDY 330
Query: 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITG 373
+E HGTGT+LGDPIE+ L + TY ++ + +GSVK+N+GH +AA+G+ G
Sbjct: 331 VEAHGTGTRLGDPIEVHAL------LSTYGAE-RDPDDPLWIGSVKSNIGHTQAAAGVAG 383
Query: 374 ILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFG 433
++K +L L++ ++P +L+F + I+ D + ++ + W P E + R AGVSSFG
Sbjct: 384 VMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQARSW--PAGE-RPRRAGVSSFG 440
Query: 434 SGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLN 493
GTNAHV++ E + + P+ VLS + + + + + L
Sbjct: 441 ISGTNAHVIVEEAPEADEPEP--------APDSGPVPLVLSGRDEQAMRAQAGRLADHLA 492
Query: 494 NKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQL 534
+ SLRD L R A R A+V+ +RD+ L+ L
Sbjct: 493 REPRN--SLRDTGFTLATRRSAWEHR-AVVVGDRDEALAGL 530
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 504 bits (1301), Expect = e-166
Identities = 183/528 (34%), Positives = 285/528 (53%), Gaps = 34/528 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLE--IDIKNKHKG---IN 69
IAI+ +AC LP G+NT + W++L++G + R W L + G ++
Sbjct: 8 IAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRG-WDLARLHHPDPDNPGTSYVD 66
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
G FL D FDA FF +SP EA +MDPQQR+LLE SW+ +E+AG D L G+ TGVF+
Sbjct: 67 KGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFL 126
Query: 130 GASGSDYTRLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
G + Y + V + G + AV + RISY GPS+ +DTACSSSLV
Sbjct: 127 GVAKFGYGEDTAA----AEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLV 182
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247
A+H A++S++ GESS A+VGG ++ P + + + L+ DG K F ADG+ E
Sbjct: 183 ALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSE 242
Query: 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNI 306
G +++L+ LS A + + A+++GSA+ +G SNGL+AP+ P Q+ ++++A +
Sbjct: 243 GVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRR-VIRQALESCGL 301
Query: 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLE 366
+ + +E HGTGT LGDPIE L + TY ++ ++ LGSVK+N+GH +
Sbjct: 302 EPGDVDAVEAHGTGTALGDPIEANAL------LDTYGRD-RDADRPLWLGSVKSNIGHTQ 354
Query: 367 AASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRI 426
AA+G+TG+LK++L L+N +LPA+L+ ++ + ++ Q W + E + R
Sbjct: 355 AAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPW--RRGE-RTRR 411
Query: 427 AGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVK 486
A VS+FG GTNAHV++ E + P+ V+SA++ + L
Sbjct: 412 AAVSAFGISGTNAHVIVEEAPER-------EHRETTAHDGRPVPLVVSARSTAALRAQAA 464
Query: 487 KYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQL 534
+ E L + L + L L R R A+V R++ + L
Sbjct: 465 QIAELLERPD---ADLAGVGLGLATTRARHEHRAAVVASTREEAVRGL 509
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 2e-37
Identities = 79/533 (14%), Positives = 157/533 (29%), Gaps = 152/533 (28%)
Query: 43 SVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD---------IEC-----FDAPFFKIS 88
+ + I+ + + K + GA L + ++A + IS
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLK-GATLYIPKALRFDRLVAGQIPTGWNAKTYGIS 1002
Query: 89 PIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGASG----SDYT 137
+DP L L + +G + S G G SG S
Sbjct: 1003 DDIISQVDP--ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSG-SGMGGVSALR 1059
Query: 138 RLLSDYI-KIPVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
+ D PV N+M+ A + +GP AC++S+ +V +
Sbjct: 1060 GMFKDRFKDEPVQNDILQESFINTMS--AWVNMLLISSSGPIKTPVGACATSVESVDIGV 1117
Query: 194 QSIKNGESSQALVGGINLILHP-----------SNTIAYYKAGML----SRDGICKTFDK 238
++I +G++ +VGG + SNT+ ++ G SR
Sbjct: 1118 ETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR-----PATT 1172
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL-- 296
+G++ +GA + ++ +AL IY I+ +A + G + P P +
Sbjct: 1173 TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPAPGKGILTTA 1230
Query: 297 ------LQKAWNESNIDVRS-----------------LGYIECHGTGTKLGDPIEIQGLK 333
++ A N+ R L ++ D E +
Sbjct: 1231 REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER 1290
Query: 334 NAF--HSIITYKKNIKNFY----------------------------------------- 350
+ + + + +
Sbjct: 1291 TREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKAN 1350
Query: 351 EKCGLGSVKTNLGHLEAASG----------ITGILK----------IILCLKNKKLPASL 390
+K ++ + HL + G +TG K + L + +P +
Sbjct: 1351 DKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNR 1410
Query: 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
N N+ D L +++ K + +R ++SFG G ++
Sbjct: 1411 NADNV-------DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1456
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-33
Identities = 106/460 (23%), Positives = 186/460 (40%), Gaps = 86/460 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G N + W+ KG + I ++
Sbjct: 32 ITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTE--------PYSVH-----LAGE 77
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LK+ F+ I EA MD + + + + ++DA D ++ + GV+IG SG
Sbjct: 78 LKN---FNIEDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIG-SG 132
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
+ +L+ + +P+ I + MA ++S GP+
Sbjct: 133 IGGMETFEIAHKQLMDKGPRRVSPFFVPM----LIPD-MA--TGQVSIDLGAKGPNGATV 185
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC++ ++ EA + ++ G++ + GG + + + LS + C+
Sbjct: 186 TACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRP 245
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
F + DG+V GEGA +L+++ L A NIYA I G T H +TAP P
Sbjct: 246 FQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYH------ITAPAPE 299
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
S +Q A +++ I+ + + Y+ HGT T +GD E++ +KN F + +
Sbjct: 300 GEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAA---KHLKV- 355
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L A GI I L +K+ K+ +++ + LD
Sbjct: 356 --------SSTKSMTGHLLGATGGIEAIF-SALSIKDSKVAPTIHAVTPDPECDLD---- 402
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + Q + + A +S G GG NA +V ++
Sbjct: 403 IVPNEAQ-------DLDITYAMSNSLGFGGHNAVLVFKKF 435
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-33
Identities = 108/460 (23%), Positives = 187/460 (40%), Gaps = 86/460 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ G+ P G N W+ KKG + + LN D K A
Sbjct: 8 VTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPD--------DFPVK-----IAAE 53
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD FD + + EA MD + + ++D+G + + GV+IG SG
Sbjct: 54 LKD---FDVEKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIG-SG 108
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
+ Y L+ + +P+ I + M + ++S + G +
Sbjct: 109 IGGMETFETQYEIFLNRGHRRVSPFFVPM----MIPD-MG--SGQVSIRFGAKGINSTTV 161
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC+++ ++ +A + I+ G++ + GG + + + LS + C+
Sbjct: 162 TACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRP 221
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
FDK+ DG++ GEGA +++L+ A IYA I G T H +TAP P
Sbjct: 222 FDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYH------ITAPAPN 275
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ ++ A +++ + + YI HGT T D E Q +K F H+ K I
Sbjct: 276 GEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHA---KKLAI- 331
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L A+ GI I +L +++ + +++ N ++ LD
Sbjct: 332 --------SSTKSMTGHTLGASGGIEAIF-ALLTIRDNIIAPTIHLKNQDEVCDLD---- 378
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
Y+ + + E + + +SFG GG NA +V
Sbjct: 379 YVPNEAR-------EANVNVVISNSFGFGGHNATLVFKRI 411
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 7e-33
Identities = 119/461 (25%), Positives = 187/461 (40%), Gaps = 87/461 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ GL P G NTL +W+ L +G + I + S D + FG
Sbjct: 11 VTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDAS--------DQACR-----FGGE 56
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+KD FDA F + EA+ MD + S + I DA ++L+ GV IG +G
Sbjct: 57 VKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIG-TG 111
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
T LL IP+ I N MA + + GP+
Sbjct: 112 IGGLKVLEDQQTILLDKGPSRCSPFMIPM----MIAN-MA--SGLTAINLGAKGPNNCTV 164
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICK 234
TAC++ A+ +A + ++NG + + GG + P + + A LS +
Sbjct: 165 TACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASR 224
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP 290
FDK+ DG+V GEG+ +L+L+ L AL IY + G A+T H +TAP P
Sbjct: 225 PFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYH------ITAPVP 278
Query: 291 --IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNI 346
+ + A +S + + YI HGT T D E + +K A H+ Y +
Sbjct: 279 DGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHA---YNIAV 335
Query: 347 KNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSH 405
S K+ GH L + GI + ++ + K+P ++N N + LD
Sbjct: 336 ---------SSTKSMTGHLLGGSGGIEAVA-TVMAIAEDKVPPTINLENPDPECDLD--- 382
Query: 406 LYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
Y+ + + +A +SFG GG N + +Y
Sbjct: 383 -YVPGQSR-------ALIVDVALSNSFGFGGHNVTLAFKKY 415
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-32
Identities = 90/466 (19%), Positives = 168/466 (36%), Gaps = 85/466 (18%)
Query: 9 NNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI 68
N + + + + WK L G S I L + + + D+ K
Sbjct: 8 NGGFPSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALED---EFVTKWDLAVK---- 59
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
G LKD + ++ M QR+ L + E AG ++ V
Sbjct: 60 -IGGHLKD----PVDSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGSP--EVDPDRFAVV 111
Query: 129 IGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGP 174
+G +G Y + + + + + + N A A I
Sbjct: 112 VG-TGLGGAERIVESYDLMNAGGPRKVSPLAVQM----IMPN-GA--AAVIGLQLGARAG 163
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----- 229
+ +ACSS A+ A + I G++ A+ GG+ + A+ +S
Sbjct: 164 VMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEP 223
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGL 285
+ + FDK+ DG+V GE +++++ A A + G+ IT H +
Sbjct: 224 ERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFH------M 277
Query: 286 TAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIIT 341
AP ++ + ++ + + + ++ HGT T +GD E ++ A + +
Sbjct: 278 VAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQAAVY 337
Query: 342 YKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400
+ K+ LGH + A + +L +L L++ +P +LN+ + I
Sbjct: 338 ---------------APKSALGHSIGAVGALESVL-TVLTLRDGVIPPTLNYETPDPEID 381
Query: 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
LD + +P+ R A +SFG GG N + Y
Sbjct: 382 LD----VVAG------EPR-YGDYRYAVNNSFGFGGHNVALAFGRY 416
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 9e-32
Identities = 109/454 (24%), Positives = 186/454 (40%), Gaps = 78/454 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ GL P G NT+ WK L G S +I+ + S K F
Sbjct: 22 VTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTS--------AYATK-----FAGL 67
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+KD F+ IS E MD + + + ++D+G + ++ + + G IG SG
Sbjct: 68 VKD---FNCEDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIG-SG 122
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
++T L++ + +P I N M A ++ Y GPS+ I
Sbjct: 123 IGGLGLIEENHTSLMNGGPRKISPFFVPS----TIVN-MV--AGHLTIMYGLRGPSISIA 175
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICK 234
TA +S + + A + I G++ + GG P + A LS +
Sbjct: 176 TAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--IQ 292
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS--SDAYHMTSPPENGAG 293
Query: 293 QSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNFY 350
+ + A ++ I+ +GY+ HGT T GD E Q +K F + + +
Sbjct: 294 AALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAA---SRVLV---- 346
Query: 351 EKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYII 409
S K+ GH L AA + I IL L+++ +P ++N N ++ LD ++
Sbjct: 347 -----SSTKSMTGHLLGAAGAVESIY-SILALRDQAVPPTINLDNPDEGCDLD----FVP 396
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + + + +SFG GGTN ++
Sbjct: 397 H------EARQVSGMEYTLCNSFGFGGTNGSLIF 424
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 107/468 (22%), Positives = 187/468 (39%), Gaps = 87/468 (18%)
Query: 9 NNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI 68
+ + G+A WK+L S I L++ + E D+ +
Sbjct: 24 GKAFPYVVVTGIAMTTALA-TDAETTWKLLLDRQSGIRTLDD---PFVEEFDLPVR---- 75
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
G L + + ++ IE M QR+ LS + E+AG ++ + V
Sbjct: 76 -IGGHLLE----EFDHQ-LTRIELRRMGYLQRMSTVLSRRLWENAGSP--EVDTNRLMVS 127
Query: 129 IGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGP 174
IG +G Y + + +K + + N A A + +
Sbjct: 128 IG-TGLGSAEELVFSYDDMRARGMKAVSPLTVQK----YMPN-GA--AAAVGLERHAKAG 179
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA--GMLSR--- 229
+ +AC+S A+ A Q I GE+ A+ GG+ + IA + ++S
Sbjct: 180 VMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAV-PIAGFAQMRIVMSTNND 238
Query: 230 --DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSN 283
G C+ FD++ DG+V GEG +L+++ A NI A I G++IT H
Sbjct: 239 DPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFH----- 293
Query: 284 GLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSI 339
+ AP+P + + + +A + + + ++ H TGT++GD E + + NA +
Sbjct: 294 -MVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP 352
Query: 340 ITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
Y + K+ LGH + A + IL +L L+++ +P +LN NL+
Sbjct: 353 AVY--------------APKSALGHSVGAVGAVESIL-TVLALRDQVIPPTLNLVNLDPE 397
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
I LD + +P+ R A +SFG GG N + Y
Sbjct: 398 IDLD----VVAG------EPR-PGNYRYAINNSFGFGGHNVAIAFGRY 434
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-31
Identities = 99/473 (20%), Positives = 174/473 (36%), Gaps = 93/473 (19%)
Query: 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKG 67
+ + + I G+ P G N +FW++L G + I + S +++
Sbjct: 1 MKRRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPS--------PYRSQ--- 48
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
A P E + MD + + + + +G D L + GV
Sbjct: 49 --VAAEADF---DPVAEG-FGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGV 102
Query: 128 FIGASG--------SDYTRLLSDYIKIPVNAHHC--------IGNSMAVLANRISYFYNF 171
+G S +Y L V+A + + M A +++
Sbjct: 103 SLG-SAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMP--AE-VAWAVGA 158
Query: 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYY---KAGMLS 228
GP ++ T C+S L +V A+++I+ G + G + + P +A + +A +
Sbjct: 159 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPI-VVACFDAIRA--TT 215
Query: 229 R-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HN 279
+ + FD DG+V EGA M +L+ AL I+A I G A H
Sbjct: 216 ARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYH- 274
Query: 280 GQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF- 336
+T + + ++ A +ES D + YI HG+GT+ D E K A
Sbjct: 275 -----MTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALG 329
Query: 337 -HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKI--ILCLKNKKLPASLNFY 393
H+ + + S+K+ +GH A G + +L L++ +P + N
Sbjct: 330 EHA---RRTPV---------SSIKSMVGHSLGAIG--SLEIAACVLALEHGVVPPTANLR 375
Query: 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ LD Y+ + E KLR G GG + +VL +
Sbjct: 376 TSDPECDLD----YVPLEAR-------ERKLRSVLTVGSGFGGFQSAMVLRDA 417
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-31
Identities = 111/469 (23%), Positives = 171/469 (36%), Gaps = 111/469 (23%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
+ GL P G F K G S G+
Sbjct: 6 VTGLGALTPIG-VGQEAFHKAQLAGKS-----------------------GVRP------ 35
Query: 77 IECFDAPFFK--------------ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSG 122
I FDA + E +D + L + +EDAG L
Sbjct: 36 ITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDP 95
Query: 123 SNTGVFIGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYF 168
G +G +G + L IP+ I N MA + I+
Sbjct: 96 ERVGTLVG-TGIGGMETWEAQSRVFLERGPNRISPFFIPM----MIAN-MA--SAHIAMR 147
Query: 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
Y FTGPS + TAC++ A+ AL+ I+ GE+ L GG + P A+ LS
Sbjct: 148 YGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALS 207
Query: 229 R-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HN 279
+ + F + DG+V GEGA +L+L+ A IYA + G + H
Sbjct: 208 TRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHH- 266
Query: 280 GQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF- 336
+T P+P + + +A ++ I +GYI HGT T +GD E+ +K F
Sbjct: 267 -----ITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFG 321
Query: 337 -HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYN 394
H+ + + S K+ +GH L AA + I + L + +P ++N +
Sbjct: 322 DHA---KRLMV---------SSTKSMIGHLLGAAGAVEAIA-TVQALYHGVIPPTINLED 368
Query: 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + L D+V E K+ A +SF GG NA +
Sbjct: 369 PDPELDL------------DFVPEPREAKVDYALSNSFAFGGHNAVLAF 405
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-30
Identities = 93/454 (20%), Positives = 179/454 (39%), Gaps = 55/454 (12%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHK-GINFGA 72
+ GL P G + W+ L G + + + E + + A
Sbjct: 5 VTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAA 63
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIGA 131
F+ F + + ++++ + + + + DA + + + TGV IG
Sbjct: 64 FVPYGSN-PGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIG- 121
Query: 132 SG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTA 181
G + +L+ + ++ P + N MA + +S Y F GP+ TA
Sbjct: 122 GGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVN-MA--SGHVSMKYGFQGPNHAAVTA 178
Query: 182 CSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKT 235
C++ ++ +A + I+ G++ + GG + + + ++ LS +
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--IQQ 293
FD + DG+V GEG+ +++L+ A IYA + G ++ G ++ +T P
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMS--GDAHHITQPPEDGKGA 296
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNFYE 351
+ +A +S + + Y+ H T T +GD +E + +K F H+ +
Sbjct: 297 VLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHA---TSGTLA---- 349
Query: 352 KCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410
S K GH L AA + I IL + + P +LN N + ++
Sbjct: 350 ---FSSTKGATGHLLGAAGAVEAIF-SILAIHHGVAPMTLNVKNPDPIFDKR----FMPL 401
Query: 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
K + +R A +SFG GGTNA ++ +
Sbjct: 402 T-----TSK-KMLVRTAMSNSFGFGGTNASLLFA 429
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 83/460 (18%), Positives = 152/460 (33%), Gaps = 91/460 (19%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G L+ +W + G + + S
Sbjct: 13 ITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPVTRFDVS--------RYPAT-----LAGQ 58
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+ D F AP I DP R+ L + ++DA D L+ + GV +
Sbjct: 59 IDD---FHAPDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTA-NA 113
Query: 134 --------SDYTRLLS---DYIK---IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
++ +L S + + +IS + GPS +
Sbjct: 114 CGGFDFTHREFRKLWSEGPKSVSVYESFA----WFYA-VN--TGQISIRHGMRGPSSALV 166
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
+ L A+ A ++I+ G + + GG++ L P ++ +G +S D
Sbjct: 167 AEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLP 225
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALN-DHDNIYAIIKGSAIT---HNGQSNGLTAPNPI 291
FD+ A GYV GEG +L+L+ + A + Y + G A T G I
Sbjct: 226 FDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAI 285
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSI-ITYKKNIKN 348
+ A N++ + + G G D E + + F + +T
Sbjct: 286 RL------ALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPVT------- 332
Query: 349 FYEKCGLGSVKTNLGHLEAASGITGILKI--ILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
KT G L + G + + ++ L+ + + ++ + +D
Sbjct: 333 --------VPKTTTGRLYSGGG--PLDVVTALMSLREGVIAPTAGVTSVPREYGID---- 378
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
++ + R A V + G G N+ VL +
Sbjct: 379 LVLGEPR-------STAPRTALVLARGRWGFNSAAVLRRF 411
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 101/458 (22%), Positives = 165/458 (36%), Gaps = 85/458 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ G P G NT +FW L G I + + S D A
Sbjct: 27 VTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHS--------DFDVH-----NAAE 72
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
++D F + + D L + + + A D L+ GV + SG
Sbjct: 73 IQD---FPFDKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVA-SG 127
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
RL K +P + N MA + ++ + G I+
Sbjct: 128 IGGIKEIEDQVLRLHEKGPKRVKPMTLPK----ALPN-MA--SGNVAMRFGANGVCKSIN 180
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TACSSS A+ +A +SIK G LVGG + P + LS
Sbjct: 181 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIP 240
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
FDK+ +G+V GEG+ ML+L+ L A I A + G T H +T+P+P
Sbjct: 241 FDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH------MTSPHPE 294
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A E+ I + Y+ HGT T + E +
Sbjct: 295 GQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLG------------ 342
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
++ + S K+ GH L AA + I+ I +++ +P + ++ I+ + +
Sbjct: 343 -KEVPVSSTKSFTGHLLGAAGAVEAIV-TIEAMRHNFVPMTAGTSEVSDYIEAN----VV 396
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
E ++ A ++FG GG NA + +
Sbjct: 397 YGQGL-------EKEIPYAISNTFGFGGHNAVLAFKRW 427
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-29
Identities = 91/459 (19%), Positives = 150/459 (32%), Gaps = 86/459 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
I G+ G + + LK G + + + W D A L
Sbjct: 10 ITGMGGVTALG-SRWDEIEAALKAGRNAVRRM--PDW------DYFESLH-TRLAAPLPG 59
Query: 77 IECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFIGASGSD 135
F P + SM + S + DAG+ +S GV G+S
Sbjct: 60 ---FAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGS 115
Query: 136 YTRLLSDYIK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTAC 182
+ + + + A +S F++ G + +AC
Sbjct: 116 VEPIRAFGTMLESGSMTDVTSNSYVQ----MMPH-TT--AVNVSLFWDLKGRIVPTSSAC 168
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM--LSR-----DGICKT 235
+S A+ A ++I G+ + L GG + P+ +A + + S +
Sbjct: 169 ASGSQAIGYAYENIAMGKQTLMLAGGAEELSGPA--VAVFDT-LYATSTRNDEPHLTPRP 225
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNPI 291
FD DG V GEGA L+L+ A I+A I G H +T P
Sbjct: 226 FDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH------MTQPTAS 279
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNF 349
+ +Q A ++ +D ++ Y+ HGT T GD E Q F I+
Sbjct: 280 TMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGERMPIS-------- 331
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLY 407
S+K+ +GH L A + I +K +LN ++ LD Y
Sbjct: 332 -------SLKSYVGHTLGACGALEAWW-TIEMMKRNWYAPTLNLTEVDPACAPLD----Y 379
Query: 408 IIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
I + ++F GG N ++
Sbjct: 380 IRGEAR-------AIDAEYVMSNNFAFGGINTSLIFRRV 411
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-28
Identities = 110/461 (23%), Positives = 178/461 (38%), Gaps = 82/461 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G W L G S + I A+
Sbjct: 25 ITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYK--------SIPCS-----VAAY 70
Query: 74 LKDIEC---FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFI 129
+ F+ F +S + +SM + + + ++D+G+ S+ TGV I
Sbjct: 71 VPRGSDEGQFNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAI 129
Query: 130 GASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
G G S+ Y K+ P + N MA A ++S Y GP+ +
Sbjct: 130 G-MGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVN-MA--AGQVSIRYKLKGPNHAVS 185
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC++ AV ++ + I +G++ + GG + + P + + +A LS C+
Sbjct: 186 TACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRP 245
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
F DG+V GEGA +L+L+ A+ IYA + G ++ H +TAP+P
Sbjct: 246 FHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGH------ITAPDPE 299
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ A ++ + + YI H T T LGD E + +K+ F H+ Y +
Sbjct: 300 GEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHA---YALAV- 355
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K GH L AA + L +KLP +LN L+
Sbjct: 356 --------SSTKGATGHLLGAAGAVEAAF-TTLACYYQKLPPTLNLDCSEPEFDLN---- 402
Query: 407 YIIDHLQDWVKPKYENKLRIAGVS---SFGSGGTNAHVVLS 444
Y+ Q+W K + SFG GGTNA + ++
Sbjct: 403 YVPLKAQEW-------KTEKRFIGLTNSFGFGGTNATLCIA 436
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 108/479 (22%), Positives = 182/479 (37%), Gaps = 79/479 (16%)
Query: 1 MEINNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEID 60
+E ++ + + G+ P G W+ L G S + L + E+
Sbjct: 12 LEAQTQGPGSMTLRVVVTGIGIVSPLG-CGKELVWQRLIGGGSGLRRLGD---DIAGELS 67
Query: 61 IKNKHKGINFGAFLKDIECFDAPFFK----ISPIEAESMDPQQRILLELSWKTIEDAGYD 116
K G ++D+ F + E MD ++ + + + + +AG+
Sbjct: 68 AK-------VGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWA 120
Query: 117 -SSKLSGSNTGVFIGASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRI 165
++ T + SG ++ R+ ++ P + N +A A +I
Sbjct: 121 PEAEQQRERTATVVA-SGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSN-LA--AGQI 176
Query: 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAG 225
S + F GP TAC++S+ A+ +A++ I+ GE+ L GG + + A
Sbjct: 177 SIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAAR 236
Query: 226 MLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT-- 277
LS + FD++ DG+V GEGA M++++ L AL A I G T
Sbjct: 237 ALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTAD 296
Query: 278 --HNGQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLK 333
H +TA ++ A ++ + Y+ H T T +GD EI+ LK
Sbjct: 297 AYH------MTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALK 350
Query: 334 NAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASL 390
F + I S K+ GH L AA I IL L++ LP +L
Sbjct: 351 TVFGVGA----GPAI---------SSTKSATGHLLGAAGAIEAAF-SILALRDGVLPGTL 396
Query: 391 NFYNLNKNIKLDDSHLYIIDHLQDWV--KPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
N + + D L D + + + IA + FG GG NA V+ Y
Sbjct: 397 NLEHPDPA----------ADGL-DLIGPAAR-HVPVEIALSNGFGFGGVNASVLFRRYP 443
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 87/360 (24%), Positives = 141/360 (39%), Gaps = 58/360 (16%)
Query: 110 IEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKI----------PVNAHHCIGNSMA 159
I DAG ++S TG+ +G SG TR + D I P + + A
Sbjct: 104 IADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSS-TA 161
Query: 160 VLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI 219
+ ++ F+ G + I +AC++S + A + I+ G+ + GG + ++
Sbjct: 162 --SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTL-SV 218
Query: 220 AYYKAG-MLSR-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKG 273
+ G M S+ + +DKN DG+V GA +L+L+ L AL IY I G
Sbjct: 219 LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVG 278
Query: 274 SAITHNGQSNG--LTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQG 331
T S+G + AP+ ++ A + + YI H T T GD EI+
Sbjct: 279 YGAT----SDGYDMVAPSGEGAIRCMKMALSTVTSKI---DYINPHATSTPAGDAPEIEA 331
Query: 332 LKNAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPA 388
++ F I + K+ GH L A I +L ++N +
Sbjct: 332 IRQIFGAGD---VCPPI---------AATKSLTGHSLGATGVQEAIYS-LLMMQNNFICE 378
Query: 389 SLNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
S + L+ + I+ D +L +SFG GGTNA +V Y
Sbjct: 379 SAHIEELDPAFADMP-----IVRKRID------NVQLNTVLSNSFGFGGTNATLVFQRYQ 427
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 105/464 (22%), Positives = 184/464 (39%), Gaps = 83/464 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I GL P + + + WK L G S + E D+ +
Sbjct: 14 ITGLGLVSPLA-SGVEETWKRLLAGESGARRVTEFEVD--------DLACQ-----IACR 59
Query: 74 LKDIEC----FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVF 128
+ + F+ + P E +DP + + + ++DAG+ + TGV
Sbjct: 60 IPVGDGTNGTFNPDLH-MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVL 118
Query: 129 IGASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178
IG SG + L D +I P + N +A + +S + GP+ +
Sbjct: 119 IG-SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLIN-LA--SGHVSIKHKLRGPNHSV 174
Query: 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD------GI 232
TAC++ A+ +A + I G++ + GG + + + LS +
Sbjct: 175 VTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAA 234
Query: 233 CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAP 288
+ +D++ DG+V GEGA +++L+ L AL IYA + G ++ H +TAP
Sbjct: 235 SRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFH------ITAP 288
Query: 289 NP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKK 344
+ A + I + YI HGT T + D IE+ ++ + K
Sbjct: 289 TESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAA---AKI 344
Query: 345 NIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403
++ S K+++GH L AA + L +++ PA+LN N ++D
Sbjct: 345 SM---------SSTKSSIGHLLGAAGAAEAVF-STLAIRDNIAPATLNLDNPAAQTRID- 393
Query: 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
+ ++ K+ +A +SFG GGTNA +VL Y
Sbjct: 394 ---LVPHKPRER-------KIDVALSNSFGFGGTNASLVLRRYT 427
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 76/358 (21%), Positives = 137/358 (38%), Gaps = 55/358 (15%)
Query: 110 IEDAGYDSSKL-SGSNTGVFIGASG---------SDYTRLLSDYIKI-PVNAHHCIGNSM 158
I DAG + G+ G+ G +D R + P + +
Sbjct: 83 IADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMAS-G 141
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
+ ++ + G + I +AC++S + A++ I+ G+ GG +
Sbjct: 142 V--SACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEM-A 198
Query: 219 IAYYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272
+ G LS + +T+D + DG+V G M++++ L AL +IYA I
Sbjct: 199 CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIV 258
Query: 273 GSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
G T +G + AP+ ++ A + + + Y+ HGT T +GD E+ +
Sbjct: 259 GYGATSDGAD--MVAPSGEGAVRCMKMAMHGVDTPI---DYLNSHGTSTPVGDVKELAAI 313
Query: 333 KNAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPAS 389
+ F S + + K GH L AA I +L L++ + S
Sbjct: 314 REVFGDKSPA--------------ISATKAMTGHSLGAAGVQEAIYS-LLMLEHGFIAPS 358
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
+N L++ I+ + +L +SFG GGTNA +V+ +
Sbjct: 359 INIEELDEQAAGL----NIVTETT-------DRELTTVMSNSFGFGGTNATLVMRKLK 405
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 5e-21
Identities = 53/296 (17%), Positives = 97/296 (32%), Gaps = 44/296 (14%)
Query: 80 FDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGAS 132
+DA + + + +DP L L + + +G + S G IG S
Sbjct: 1168 WDARRYGVPEDIIQQVDP--VTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIG-S 1224
Query: 133 GSDYTRLLSDYIKI-----PVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSS 184
G T L K PV N+MA A + TGP AC++
Sbjct: 1225 GVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMA--AWVNMLLLSSTGPIKTPVGACAT 1282
Query: 185 SLVAVHEALQSIKNGESSQALVGGIN-----LILHPSNTIAYYKAGMLSRDGI-----CK 234
++ ++ +I G++ LVGG + +N A A G +
Sbjct: 1283 AVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSR 1342
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQS 294
+G++ +G + ++ +AL IY I+ ++ + G + P P Q
Sbjct: 1343 PTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDK--IGRSVPAPGQGV 1400
Query: 295 Y-LLQKAWNESNIDVRSLGY-----------IECHGTGTKLGDPIEIQGLKNAFHS 338
++ + + Y I+ L E+ +K+
Sbjct: 1401 LTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSE 1456
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 3e-14
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 13/147 (8%)
Query: 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG 356
L+ A + + LG HGT T D E + + K N
Sbjct: 1503 LRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGN------AVLGI 1556
Query: 357 SVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416
K GH + A+G + + L +P + N N D + D++
Sbjct: 1557 FQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADN-------VDKVMEQFDYIVYPS 1609
Query: 417 KPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + ++ V+SFG G A +
Sbjct: 1610 RSIKTDGIKAFSVTSFGFGQKGAQAIG 1636
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 1e-18
Identities = 75/482 (15%), Positives = 145/482 (30%), Gaps = 137/482 (28%)
Query: 80 FDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGAS 132
++A + IS +DP L L + +G + S G G S
Sbjct: 1193 WNAKTYGISDDIISQVDP--ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSG-S 1249
Query: 133 G----SDYTRLLSDYI-KIPVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSS 184
G S + D PV N+M+ A + +GP AC++
Sbjct: 1250 GMGGVSALRGMFKDRFKDEPVQNDILQESFINTMS--AWVNMLLISSSGPIKTPVGACAT 1307
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHP-----------SNTIAYYKAGML----SR 229
S+ +V +++I +G++ +VGG + SNT+ ++ G SR
Sbjct: 1308 SVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR 1367
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN 289
+G++ +GA + ++ +AL IY I+ +A + G + P
Sbjct: 1368 -----PATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPA 1420
Query: 290 PIQQSYL--------LQKAWNESNIDVRS-----------------LGYIECHGTGTKLG 324
P + ++ A N+ R L ++
Sbjct: 1421 PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSE 1480
Query: 325 DP----------IEIQGLKNAFHSIITYKKN----------IKNFYEKCGL--------- 355
D I + + + + ++ GL
Sbjct: 1481 DQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1540
Query: 356 --------------GSVKTNLGHLEAASG----------ITGILK----------IILCL 381
++ + HL + G +TG K + L
Sbjct: 1541 FHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQIL 1600
Query: 382 KNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHV 441
+ +P + N N+ D L +++ K + +R ++SFG G
Sbjct: 1601 NSGIIPGNRNADNV-------DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQA 1653
Query: 442 VL 443
++
Sbjct: 1654 IV 1655
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-18
Identities = 80/563 (14%), Positives = 171/563 (30%), Gaps = 147/563 (26%)
Query: 323 LGDPIEIQGLKNAFHSIITYKKNI-KNFYEKCGLGSVKTNLGHLEAASGITGILKIILCL 381
+ + G F ++++ ++ + + F E ++ N L + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE----EVLRINYKFLMSP------------I 98
Query: 382 KNKKLPASLNF--YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA--------GVSS 431
K ++ S+ Y ++ +D+ ++ ++ + + KLR A V
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLI 155
Query: 432 FGSGGTN----AHVVLSEYNIE--INNKI--INNISINFENSTLPLIFVLSAKTKSQLLI 483
G G+ A V Y ++ ++ KI +N + N + L ++ L +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 484 YVKKYIEWLNNKESLNISLRDLTLQLQKGR--------------QAMN--CRLALVIFNR 527
S+ LR L A N C++ L+ R
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLT-TR 273
Query: 528 D----DLLSQLNFFYEKKIIPMQDKLDSFNESKNKIDIATVINLAIKE--KNFKKIAILW 581
D LS I + + + K + ++ ++ +
Sbjct: 274 FKQVTDFLSAAT----TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 582 QSGININWSLIDKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQ 641
S I I + + + L I +S + + +
Sbjct: 330 LSII---AESIRDGLATW--------DNWKHVNCDKLTTIIESSLNVL--EPAEYR---- 372
Query: 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSI---NSTKIYDYPTLNKFFKFIMS 698
+ FD ++F + I + L LS+ + K +NK K+ S
Sbjct: 373 ---KMFDRLSVFPP---SA--------HIPTIL-LSLIWFDVIKSDVMVVVNKLHKY--S 415
Query: 699 QISKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINN 758
+ K+ K +SI + + + ++ + ++ + I++ Y+ K S +L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLEN-EYALHR---SIVD---HYNIPKTFDSDDLIPPY 468
Query: 759 DDFDKSINNDDFEISKYI--------REIPKSNNLKNFANNLL----IGRNCVSKI--AS 804
D +Y + I + F L + + KI S
Sbjct: 469 LD-------------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDS 511
Query: 805 TRW-----IIDDFYDFR-YDNAI 821
T W I++ + Y I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 103/673 (15%), Positives = 194/673 (28%), Gaps = 178/673 (26%)
Query: 58 EIDIKNKH-KGINFGAFLKDIECFDAPFFKISPIEAESMD-------PQQRILLELSWKT 109
E + K + AF+ + +C D S + E +D L L W T
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFW-T 70
Query: 110 IEDAGYDSSKLSGSNTGVFIGAS-GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYF 168
+ + + F+ +Y L+S SM Y
Sbjct: 71 LLSKQEEMVQ-------KFVEEVLRINYKFLMSPI------KTEQRQPSM----MTRMYI 113
Query: 169 YN----FTGPSLLIDTACS--SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYY 222
+ + S + + +AL ++ + N+++
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---------NVLID-------- 156
Query: 223 KAGMLSRDGICKT-----------FDKNAD--------GYVRGEGAVMLMLKPLSVALND 263
G+L G KT D V+ ML+ L + D
Sbjct: 157 --GVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-D 210
Query: 264 HDNIYAIIKGSAITHNGQS-----NGLTAPNPIQQSYL-LQKAWNESNIDVRSLGYIECH 317
+ S I S L P + L L N + +L C
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---C- 266
Query: 318 GTGTKL----GDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGH------LEA 367
K+ L A + I+ + + L E
Sbjct: 267 ----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 368 ASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQ-DWVKPKYENKLRI 426
+ L II + A+ + + KL ++ L+ + ++ +L +
Sbjct: 323 LTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSV 380
Query: 427 AGVSSFGSGGTNAHV---VLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLI 483
F +AH+ +LS ++ + + +L
Sbjct: 381 -----FPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---------------- 416
Query: 484 YVKKYIEWLNNKESLNISLRDLTLQLQK---GRQAMNCRL-----ALVIFNRDDLLSQL- 534
V+K KES IS+ + L+L+ A++ + F+ DDL+
Sbjct: 417 -VEK-----QPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 535 -NFFYEK-----KIIPMQDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGININ 588
+FY K I +++ F ++ E+ + + W + +I
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRM--------VFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 589 WSLID----KKNIRISLPTYP--FSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQI 642
+L K I + P Y + +LPK + + + S T + +I L
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEENLICSKYTDL-----LRIAL-- 572
Query: 643 KSEQFDDDAIFID 655
+D+AIF +
Sbjct: 573 ---MAEDEAIFEE 582
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* Length = 99 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 8e-15
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + + +D F+D+GLDSI+ V W IN +L++ +TK+YDYPTL + +I
Sbjct: 34 LYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQI 93
Query: 700 IS 701
+S
Sbjct: 94 LS 95
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-14
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + Q A F+D+G+DS+ W+R ++ + + + IY +PTL + +
Sbjct: 143 LFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRR 202
Query: 700 I 700
+
Sbjct: 203 V 203
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 4e-14
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + Q D + F+++GLDS+IA WIR+IN L I + IY YP F +++ +Q
Sbjct: 39 LYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQ 98
Query: 700 IS 701
+
Sbjct: 99 LQ 100
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A Length = 88 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKF 692
L + + D + F + L+S A+ + ++ L +N I++YPT+ +
Sbjct: 27 LDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQL 79
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-10
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQL--DLSINSTKIYDYPTLNKFFKFIM 697
I E+ DD+ F DMG+DS+ ++ + L DL + D T+ F++
Sbjct: 24 SGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFML 83
Query: 698 SQ 699
Sbjct: 84 GS 85
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 Length = 95 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 650 DAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
D F +G DS+ + + +I + + + T + + ++
Sbjct: 31 DVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT 82
|
| >4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 468 PLIFVLSAKTKSQLLIYVKKYIEWLNNKESLNISLRDL--TLQLQKGRQAMNCRLALVIF 525
+ V A + L + + L DL L R + R A +
Sbjct: 3 HELVVCGAPDAAALTGLLTRVRAAATALSRP--ELTDLAAGLAAA-HRGDVPARFAAAVR 59
Query: 526 NRDDLLSQL 534
+ D L++ L
Sbjct: 60 DADGLVAAL 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 100.0 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 100.0 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 100.0 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 100.0 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.98 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.98 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.98 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.97 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.97 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.97 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.97 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.97 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.97 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.96 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.96 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.96 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.96 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.95 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.94 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.94 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.93 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.93 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.87 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.86 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.83 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.82 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.79 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.75 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.7 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.69 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.67 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.66 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.66 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.66 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.65 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.64 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.64 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.6 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.59 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.58 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.58 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.58 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.58 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.54 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 99.5 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 99.49 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.45 | |
| 3tzy_A | 491 | Polyketide synthase PKS13; acyltransferase, long f | 99.41 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 99.38 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 99.33 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 99.32 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.32 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 99.24 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.21 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 99.12 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 99.1 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 99.06 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.93 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 98.92 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 98.91 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 98.83 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 98.82 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 98.81 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 98.73 | |
| 2kjs_A | 87 | Putative acyl carrier protein; alpha, ACP, PNS, st | 98.72 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 98.72 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 98.69 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 98.68 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 98.68 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 98.65 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 98.64 | |
| 3gzm_A | 81 | Acyl carrier protein; helix bundle, phosphopanteth | 98.63 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 98.61 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 98.59 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 98.58 | |
| 4amm_A | 401 | DYNE8; transferase; 1.40A {Micromonospora chersina | 98.57 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 98.55 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.54 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.54 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 98.54 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 98.52 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 98.52 | |
| 3ejb_A | 97 | Acyl carrier protein; protein-protein complex, cyt | 98.51 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.5 | |
| 1vku_A | 100 | Acyl carrier protein; TM0175, structural genomics, | 98.5 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 98.49 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 98.47 | |
| 2jq4_A | 105 | AGR_C_4658P, hypothetical protein ATU2571; ATC2521 | 98.43 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.41 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 98.41 | |
| 2kw2_A | 101 | Specialized acyl carrier protein; structural genom | 98.35 | |
| 4dxe_H | 101 | ACP, acyl carrier protein; acyl-carrier-protein sy | 98.32 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 98.31 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 97.64 | |
| 2l4b_A | 88 | Acyl carrier protein; infectious disease, human gr | 98.27 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 98.24 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 98.22 | |
| 2amw_A | 83 | Hypothetical protein NE2163; all helical protein, | 98.22 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 98.2 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 98.08 | |
| 1dv5_A | 80 | APO-DCP, APO-D-alanyl carrier protein; 3-helix bun | 98.07 | |
| 3ce7_A | 107 | Specific mitochodrial acyl carrier protein; malari | 98.0 | |
| 2kci_A | 87 | Putative acyl carrier protein; alpha, ACP, PCP, st | 98.0 | |
| 1fh1_A | 92 | NODF, nodulation protein F; ROOT nodulation factor | 98.0 | |
| 2l9f_A | 102 | CALE8, meacp; transferase, acyl carrier protein; N | 97.93 | |
| 2cgq_A | 113 | Acyl carrier protein ACPA; RV0033, protein transpo | 97.91 | |
| 2lki_A | 105 | Putative uncharacterized protein; helical bundle, | 97.9 | |
| 2fq1_A | 287 | Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy | 97.85 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.68 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 97.47 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 97.44 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 97.36 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 97.36 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 97.35 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 97.32 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 97.32 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 97.28 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 97.22 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 97.22 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 97.17 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 97.01 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 96.98 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 96.93 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 96.81 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 96.73 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 96.15 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 95.63 | |
| 3tzy_A | 491 | Polyketide synthase PKS13; acyltransferase, long f | 92.77 |
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-95 Score=893.89 Aligned_cols=509 Identities=35% Similarity=0.572 Sum_probs=459.8
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCccc-CCCcccccccccCC---CCcccccccCcccCCCCCCC
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESR-WIWPLEIDIKNKHK---GINFGAFLKDIECFDAPFFK 86 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r-~~~~~~~~~~~~~~---~~~~~~~l~~~~~FD~~~f~ 86 (831)
..++|||||||||||+|++++++||++|.+|+++++++|.+| |+...++++..... ..++|||+++++.||+.|||
T Consensus 4 ~~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~ 83 (915)
T 2qo3_A 4 ESDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFG 83 (915)
T ss_dssp CCCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTSTTCBSCCEEBCCSCSSEECHHHHT
T ss_pred CCCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccccCCCcccceeEEeCCccccCHhhcC
Confidence 457899999999999887899999999999999999999999 87666555443322 24689999999999999999
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
|+++|++.||||+||+++++|+||||||++++++++.+||||+|++..+|..... ....+.++..+++..+++++||+
T Consensus 84 i~~~ea~~mdp~~rL~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~a~ris 161 (915)
T 2qo3_A 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAKFGYGEDTA--AAEDVEGYSVTGVAPAVASGRIS 161 (915)
T ss_dssp CCHHHHHTSCHHHHHHHHHHHHHHHHTTCCGGGGTTBCCEEEEECCCCCTTTTCC-----CTTCHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEecCchHHhhhc--ccccccccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888864332 22346677888999999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceec
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRG 246 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~g 246 (831)
+.|||+||+++|+++||||++||++||++|++|+||+|||||+|.+++|..+..|...++++++++|+|||.++||+++|
T Consensus 162 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~v~g 241 (915)
T 2qo3_A 162 YTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFS 241 (915)
T ss_dssp HHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBCSSCCCCTTBTTCCCBCBB
T ss_pred HHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccCCCCCcccccCCCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCH
Q psy11395 247 EGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326 (831)
Q Consensus 247 EGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~ 326 (831)
||+|+||||++++|+++|++||++|+|+++++||.+.+++.|+..+|.++|+++|++|||+|+||||||+|||||++||+
T Consensus 242 EGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~dId~ve~HgtgT~~gD~ 321 (915)
T 2qo3_A 242 EGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDP 321 (915)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGGGCCEEECCCCCCTTTHH
T ss_pred CceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCcEEEecCCCCccCCH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCc
Q psy11395 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406 (831)
Q Consensus 327 ~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~ 406 (831)
+|..+|.++|+.... ...+|+|||+|+||||++||||+++++|++++|++++|||++|+++|||.|++++++|
T Consensus 322 ~E~~al~~~f~~~~~-------~~~~~~vgs~K~~iGH~~~AaG~~~lik~~l~L~~~~ipp~~~~~~~~p~~~~~~~~~ 394 (915)
T 2qo3_A 322 IEANALLDTYGRDRD-------ADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGV 394 (915)
T ss_dssp HHHHHHHHHTSSSCC-------TTSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCSSBCTTSCCSSSSE
T ss_pred HHHHHHHHHhccccC-------CCCcccccCcccceeCCccccchHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCce
Confidence 999999999974211 1257899999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHH
Q psy11395 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVK 486 (831)
Q Consensus 407 ~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~ 486 (831)
+++++.++|+.. .++|+++||||||||+|+|+||++++...... .......+.+|+|||+++++|+.+++
T Consensus 395 ~~~~~~~~w~~~---~~~r~a~v~sfG~gG~Nah~vl~~~~~~~~~~-------~~~~~~~~~~~~lsa~~~~~l~~~~~ 464 (915)
T 2qo3_A 395 ALLAGNQPWRRG---ERTRRAAVSAFGISGTNAHVIVEEAPEREHRE-------TTAHDGRPVPLVVSARSTAALRAQAA 464 (915)
T ss_dssp EECSSCEECCSS---SSCCEEEEEEECTTSEEEEEEEEECCC---------------CCSSCEEEEEEESSHHHHHHHHH
T ss_pred eeecCCcccccC---CCCcEEEEeeecCCCceEEEEEeecccccccc-------ccccCCcccceeEecCCHHHHHHHHH
Confidence 999999999642 46899999999999999999999986432110 11122345789999999999999999
Q ss_pred HHHHHHhcccccCccHHHHHHHHHhccccCCceEEEEeCCHHHHHHHHHHHHccC
Q psy11395 487 KYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKK 541 (831)
Q Consensus 487 ~~~~~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~v~~~~~~l~~~l~~~~~~~ 541 (831)
+|.+||. ++ +..|.|+||||+.+|++|+||+++++++.+||.++|+.+..+.
T Consensus 465 ~~~~~l~-~~--~~~l~d~~~tl~~~r~~~~~r~~~~~~~~~~l~~~l~~~~~~~ 516 (915)
T 2qo3_A 465 QIAELLE-RP--DADLAGVGLGLATTRARHEHRAAVVASTREEAVRGLREIAAGA 516 (915)
T ss_dssp HHHHHTT-SS--SCCHHHHHHHHHHSSCCCSEEEEEEESSHHHHHHHHHHHHHTC
T ss_pred HHHHHhc-CC--ccchhHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHhcCC
Confidence 9999998 33 4579999999999999999999999999999999999987664
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-94 Score=886.33 Aligned_cols=499 Identities=35% Similarity=0.586 Sum_probs=450.4
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCccc-CCCcccccccccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESR-WIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
.++|||||||||||+|+.++++||++|.+|+++++++|.+| |.. ....++|||+++++.||+.||+|+|+
T Consensus 38 ~~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~---------~~~~~~~~~l~~~~~fD~~~f~i~~~ 108 (917)
T 2hg4_A 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEP---------DPDARLGGMLAAAGDFDAGFFGISPR 108 (917)
T ss_dssp HCCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCC---------CSSCCEEBCCTTTTEECTGGGTCCHH
T ss_pred CCCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCC---------CCCcceeeEecCccccChhhcCCCHH
Confidence 36899999999999877889999999999999999999988 621 11257899999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN 170 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg 170 (831)
|++.|||||||+++++|+|||||||+++++++.+||||+|++..+|...... ....+.++..+++..+++++||++.||
T Consensus 109 ea~~mdp~~rl~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~d~~~~~~~-~~~~~~~~~~~g~~~~~~a~ris~~lg 187 (917)
T 2hg4_A 109 EALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDE-APDEVLGYVGTGTASSVASGRVAYCLG 187 (917)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTTCCGGGGTTSCEEEEEEECCCCCSCCTTS-SCGGGGGGHHHHHCHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEeCCchhhhhhhc-CccccCcccccccccchHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998888643322 122456677788888999999999999
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 171 FTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 171 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
|+||+++|+++||||++||++||++|++|+||+|||||+|.++.|..+..|...++++++++|+|||.++||+++|||+|
T Consensus 188 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls~~g~~~pFd~~adG~~~gEGag 267 (917)
T 2hg4_A 188 LEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAG 267 (917)
T ss_dssp CCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBCTTSCCCTTBTTCCCBCBBCEEE
T ss_pred CCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcCCccccCcccccccCCCCcceEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
+||||++++|+++|++||++|+|+++++||.+.+++.|+..+|.++|+++|++|||+|+||||||+|||||++||++|++
T Consensus 268 avVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dId~veaHgtgT~~gD~~E~~ 347 (917)
T 2hg4_A 268 VLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVH 347 (917)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCTTHHHHHHH
T ss_pred EEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEeeccCCCccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeec
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~ 410 (831)
+|.++|+.... ...+|+|||+|+||||+++|||+++++|++++|+|++|||++||++|||.|+++.++|++++
T Consensus 348 al~~~fg~~~~-------~~~~~~vgs~K~~iGH~~~AaG~~~lik~vl~L~~~~ipp~~~~~~~~p~i~~~~~~~~v~~ 420 (917)
T 2hg4_A 348 ALLSTYGAERD-------PDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVS 420 (917)
T ss_dssp HHHTTTTTSSC-------TTSCCEEECTHHHHCBCGGGTTHHHHHHHHHHHHHTEECCCTTCCSBCTTSCC---CCEECC
T ss_pred HHHHHhccccC-------CCCceeccCcccceecchhhhHHHHHHHHHHHHhcCCcCCCCCCCCCCccCCccccceeecC
Confidence 99999975211 12578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHHHHHH
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIE 490 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~~ 490 (831)
+.++|+.. .++|+++||||||||+|+|+||++++..... .......|++|+|||+++++|+.++++|.+
T Consensus 421 ~~~~w~~~---~~~r~a~v~sfG~gG~Nah~vl~~~~~~~~~--------~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~ 489 (917)
T 2hg4_A 421 QARSWPAG---ERPRRAGVSSFGISGTNAHVIVEEAPEADEP--------EPAPDSGPVPLVLSGRDEQAMRAQAGRLAD 489 (917)
T ss_dssp SCEECCCC---SSCCEEEEEEECTTSEEEEEEEEECCCCC----------------CCEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcccCCCC---CCCCEEEEeeecCCCceEEEEeccCCcccCC--------CCccccCcceeeeccCCHHHHHHHHHHHHH
Confidence 99999742 4689999999999999999999998743210 001233478999999999999999999999
Q ss_pred HHhcccccCccHHHHHHHHHhccccCCceEEEEeCCHHHHHHHHHHHHccC
Q psy11395 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKK 541 (831)
Q Consensus 491 ~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~v~~~~~~l~~~l~~~~~~~ 541 (831)
||..++ +..|.|+||||+.+|++|+||+++++++. ||+++|+.+..+.
T Consensus 490 ~l~~~~--~~~l~d~~~tl~~~r~~~~~r~~~~~~~~-~l~~~l~~~~~~~ 537 (917)
T 2hg4_A 490 HLAREP--RNSLRDTGFTLATRRSAWEHRAVVVGDRD-EALAGLRAVADGR 537 (917)
T ss_dssp HHHHCT--TSCHHHHHHHHHHSSCCCSEEEEEEESHH-HHHHHHHHHHHTC
T ss_pred HHhcCC--cccHHHHHHHHHhchhcccceEEEEeCCH-HHHHHHHHHhccc
Confidence 998765 35799999999999999999999999999 9999999987664
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-90 Score=848.52 Aligned_cols=476 Identities=34% Similarity=0.581 Sum_probs=423.9
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
.++|||||||||||+| .++++||++|.+|++++++++ +||.... ++ ....+|++++++.||+.||||+|+|
T Consensus 3 ~~~IaIvGmg~r~P~~-~~~~~~W~~l~~g~~~~~~~~-~~~~~~~-~~------~~~~~g~~~~~~~FD~~~f~i~~~e 73 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDD-RRWKAGL-YG------LPRRSGKLKDLSRFDASFFGVHPKQ 73 (965)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEECSS-SSSCTTG-GG------CCSCEECCSCSSCCCTTTTTCCHHH
T ss_pred CCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCcccCCC-ccccccc-cc------CcccccccCChhhcChhhcCCCHHH
Confidence 4789999999999987 899999999999999999975 6786422 21 1235688999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
++.|||||||+++++|+|||||||+++++++.++|||+|++..+|....... ...+.++..+|+..+++++||||.|||
T Consensus 74 a~~mDp~~rL~leaa~eALedAGi~~~~i~~~~~Gv~vG~~~~d~~~~~~~~-~~~~~~~~~~g~~~~~~a~ris~~lgl 152 (965)
T 3hhd_A 74 AHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSEALSRD-PETLVGYSMVGCQRAMMANRLSFFFDF 152 (965)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHTTCCGGGGTTSCCEEEEEECCCHHHHHHTSC-TTTCCTHHHHHHSTTHHHHHHHHHHTC
T ss_pred HhhcCHHHHHHHHHHHHHHHHcCCChHHcCCceeEEEEeccchhHHHHHhcC-ccccCcccccccccchHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999997766542 335677888899999999999999999
Q ss_pred CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 172 ~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+||+++|+++||||++||++||++|++|+||+|||||+|.+++|..+..|.+.++++++++|++||.+++||++|||+|+
T Consensus 153 ~GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~~~gEGaga 232 (965)
T 3hhd_A 153 RGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVA 232 (965)
T ss_dssp CSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBCTTCCCCTTBTTCCSBCBBCEEEE
T ss_pred CCCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcCCCCccccchhccCCccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeeccCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHH
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQS-NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~-~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~ 330 (831)
||||++++|+ +||++|+|+++|+||.+ .+++.|+..+|.++|++||++|||+|+||||||+|||||++||++|++
T Consensus 233 vvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dIdyvEaHgTgT~~gD~~E~~ 308 (965)
T 3hhd_A 233 VLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELN 308 (965)
T ss_dssp EEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCTTHHHHHHH
T ss_pred EEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHhccccccCCCCCCCCHHHHH
Confidence 9999999985 59999999999999976 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC-CCCCCceee
Q psy11395 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLYII 409 (831)
Q Consensus 331 al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~-~~~~~~~~~ 409 (831)
||.++|+... ..+|+|||+|+||||++||||++++||++++|+|++|||++||++|||+|+ +.+.+++++
T Consensus 309 Al~~~f~~~~---------~~~~~vgs~Ks~iGH~~~AaG~~~lik~~l~l~~~~ipp~~~~~~~np~i~~~~~~~~~v~ 379 (965)
T 3hhd_A 309 GITRALCATR---------QEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVV 379 (965)
T ss_dssp HHHHHHCSSC---------SSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCCSBCTTCHHHHHTSEEEC
T ss_pred HHHHHhcccC---------CCceeeeccccccccchhhhhHHHHHHHHHHHhcCCcCCccCCCCCCccCcccccCceeec
Confidence 9999997421 257999999999999999999999999999999999999999999999998 688899999
Q ss_pred cccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHHHHH
Q psy11395 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYI 489 (831)
Q Consensus 410 ~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~ 489 (831)
++.++|+. ++++||||||||+|+|+||++++..... .......|++|++||+++++|+++++++.
T Consensus 380 ~~~~~~~~-------~~a~v~sfG~gG~Nah~il~~~~~~~~~--------~~~~~~~~~~~~~Sa~~~~~l~~~~~~~~ 444 (965)
T 3hhd_A 380 DQPLPVRG-------GNVGINSFGFGGSNVHIILRPNTQPPPA--------PAPHATLPRLLRASGRTPEAVQKLLEQGL 444 (965)
T ss_dssp CSCEECCS-------CEEEEEEECTTSEEEEEEEEECCCCCCC--------CCGGGGSCEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCccCCC-------CeEEEecccCCCceEEEEeccCCccccc--------ccccccccceeecccCCHHHHHHHHHHHH
Confidence 99999952 4799999999999999999998643211 01122457899999999999999999999
Q ss_pred HHHhcccccCccHHHHHHHHHhccccCCceEEEEeCCHHH
Q psy11395 490 EWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDD 529 (831)
Q Consensus 490 ~~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~v~~~~~~ 529 (831)
+++...+.. ..+.|++|| +|++++||.++++.+.++
T Consensus 445 ~~~~~~~~~-~~~~~~~~~---~~~~~~~r~~~~~~~~~~ 480 (965)
T 3hhd_A 445 RHSQDLAFL-SMLNDIAAV---PATAMPFRGYAVLGGERG 480 (965)
T ss_dssp HTTTCHHHH-HHHHHHCCC---CTTTCCEEEEEEESSSSC
T ss_pred hhhcccchh-hHHHHHHhh---hcccCcceEEEEecccch
Confidence 887543211 125566665 688999999888776544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-88 Score=902.29 Aligned_cols=471 Identities=35% Similarity=0.580 Sum_probs=419.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||||||+| .++++||++|.+|++++++. .+||+... ++ ....+|++++++.||+.||||+|+|+
T Consensus 2 ~~iaI~G~~~~~p~~-~~~~~~w~~l~~g~~~~~~~-~~~~~~~~-~~------~~~~~g~~~~~~~fd~~~f~i~~~ea 72 (2512)
T 2vz8_A 2 EEVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTAD-DRRWKAGL-YG------LPRRMGKLKDLSRFDASFFGVHSKQA 72 (2512)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEEC-SSSSCTTG-GG------CCSEEECCSCSSCCCTTTTTCCHHHH
T ss_pred CCEEEEeeeeeCCCC-CCHHHHHHHHHcCCccccCC-Cccccccc-cc------CcccceecCCcccCCHhhcCCCHHHH
Confidence 589999999999987 89999999999999999995 47886432 11 12467899999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT 172 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 172 (831)
+.||||||++|+++|||||||||++.++++++||||+|++..+|....... ...+.++..+|+..+++++||||+|||+
T Consensus 73 ~~~dpq~rl~l~~~~eAle~Ag~~~~~~~~~~~gv~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~ris~~~~l~ 151 (2512)
T 2vz8_A 73 NTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEALSRD-PETLVGYSMIGCQRAMMANRLSFFFDFK 151 (2512)
T ss_dssp HTSCHHHHHHHHHHHHHHGGGTCCGGGGTTCSCEEEEEECCCHHHHHTTSC-TTTSCGGGGGGTSTTHHHHHHHHHHTCC
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCChhhcCCCCeEEEEEeccHHHHHHHhcC-ccccCcceecccchhHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999997665432 3357788899999999999999999999
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEE
Q psy11395 173 GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252 (831)
Q Consensus 173 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaav 252 (831)
||+++|+||||||++|||+||++|++|+||+|||||+|.+++|..+..|+++++||++|+|||||.++|||++|||+|+|
T Consensus 152 Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls~~g~c~~Fd~~adG~~~gEG~~~~ 231 (2512)
T 2vz8_A 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAV 231 (2512)
T ss_dssp SCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBCTTCSCCSSSTTCCCBCBBCEEEEE
T ss_pred CCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCCCCCCCCCCCCCCCCcceeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhhhhhCCCceEEEEeeeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHH
Q psy11395 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQ-SNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQG 331 (831)
Q Consensus 253 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~-~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~a 331 (831)
|||++++|+ +|||+|+|+++|+||. +.++++|++.+|+++|++||++|||+|+||+|||+|||||++||++|++|
T Consensus 232 vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i~yveaHGTgT~~gD~~E~~a 307 (2512)
T 2vz8_A 232 LLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNG 307 (2512)
T ss_dssp EEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSCCEEECCCCCCTTHHHHHHHH
T ss_pred EEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEeecCCCCCCCHHHHHH
Confidence 999999996 6999999999999996 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC-CCCCCceeec
Q psy11395 332 LKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLYIID 410 (831)
Q Consensus 332 l~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~-~~~~~~~~~~ 410 (831)
|.++|+... ..+|+|||+|+||||+++|||++++||++++|+|++|||++||++|||+|+ ++++++++++
T Consensus 308 l~~~f~~~~---------~~~~~igS~Ks~iGH~~~AaG~~~~ik~~l~l~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~ 378 (2512)
T 2vz8_A 308 IVNALCATR---------REPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVD 378 (2512)
T ss_dssp HHHHHCSCS---------SSCCEEECHHHHHCBCGGGHHHHHHHHHHHHHTTTBCCCCSSCCSCCTTSSSSSSSSCEECC
T ss_pred HHHHhcccC---------CCCceeecccccccccccccchhHHHHHHHHHHCCCcCCCCCCCCCCccccccccCceEecC
Confidence 999997421 157999999999999999999999999999999999999999999999997 9999999999
Q ss_pred ccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhHHHHHHHHHHH
Q psy11395 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIE 490 (831)
Q Consensus 411 ~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~~ 490 (831)
+.++|+. ++++||||||||+|+|+|||+++..... .......|++|++||+|+++|+.+++++.+
T Consensus 379 ~~~~~~~-------~~a~vnsfG~gG~Nah~il~~~~~~~~~--------~~~~~~~~~~~~~sa~~~~~l~~~~~~~~~ 443 (2512)
T 2vz8_A 379 RPLPIRG-------GNVGINSFGFGGSNVHVILQPNSRPAPP--------PAQHAALPRLLQASGRTLEAVQTLLEQGLR 443 (2512)
T ss_dssp SCCBCCS-------CCEEEEEEETTTEEEEEEEEECCCCCCC--------CSSTTTCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CCccCCC-------CeEEEeccCCCCceeEEEEccCCccccc--------cccccccceeeeecCCCHHHHHHHHHHHHh
Confidence 9999952 4799999999999999999998643210 011234578999999999999999999987
Q ss_pred HHhcccccCccHHHHHHHHHhccccCCceEEEEeC
Q psy11395 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIF 525 (831)
Q Consensus 491 ~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~v~~ 525 (831)
|+...... ..+.+++| ++|.+++||.++|+.
T Consensus 444 ~~~~~~~~-~~~~~~~~---~~~~~~~~r~~~~~~ 474 (2512)
T 2vz8_A 444 HSRDLAFV-GMLNEIAA---VSPVAMPFRGYAVLG 474 (2512)
T ss_dssp TTTCHHHH-HHHHHHHC---CCTTTCCEEEEEEES
T ss_pred hhcccchh-hHHHHHHh---cccccCceeeeeecc
Confidence 76421100 01344444 368899999866654
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-76 Score=673.81 Aligned_cols=405 Identities=24% Similarity=0.366 Sum_probs=360.8
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccC---cccCCCCCCCCC
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD---IECFDAPFFKIS 88 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~---~~~FD~~~f~i~ 88 (831)
.++||||||||++|+| .++++||++|.+|+++++++|. |+.. ....++++++++ ++.||+.|| |+
T Consensus 20 ~~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~fd~~~~-~~ 87 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVG--EEYK--------SIPCSVAAYVPRGSDEGQFNEQNF-VS 87 (438)
T ss_dssp ECCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCS--GGGT--------TSSCCEEECCCBSSSTTSBCGGGT-SC
T ss_pred CCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCCc--hhcc--------cCccceeeeeccccccccCChhhc-CC
Confidence 3689999999999998 8999999999999999999974 4211 112357888876 678999999 99
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHcCCCC-CCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHH
Q psy11395 89 PIEAESMDPQQRILLELSWKTIEDAGYDS-SKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVL 161 (831)
Q Consensus 89 ~~ea~~mdp~~rl~l~aa~~ALedAG~~~-~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~ 161 (831)
+++++.|||+++|+++++++||+|||+++ +++++.++|||+|++.+++..+... .....+.++.+++...+++
T Consensus 88 ~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 167 (438)
T 2iwz_A 88 KSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMA 167 (438)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcCCCCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHH
Confidence 99999999999999999999999999998 8888889999999988876432211 1122456677778888999
Q ss_pred HHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC----CCCCcccc
Q psy11395 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKTFD 237 (831)
Q Consensus 162 a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~----~g~~~~Fd 237 (831)
+++|++.|||+||+++|+++|+||++||++|+++|++|+||+|||||+|.+++|..+..|..++++++ ++.|+|||
T Consensus 168 a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pfd 247 (438)
T 2iwz_A 168 AGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFH 247 (438)
T ss_dssp HHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCSCTTTSCCTTC
T ss_pred HHHHHHHhCCCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCCCCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999888988889999999987 78999999
Q ss_pred CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 238 ~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
.+++|+++|||++++||+++++|+++|++||++|+|+++++|+.+.....|+..++.++|++||+++|++|+||||||+|
T Consensus 248 ~~~~G~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~H 327 (438)
T 2iwz_A 248 PKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAH 327 (438)
T ss_dssp TTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred CCCCCEEeeceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEec
Confidence 99999999999999999999999999999999999999999998633333477899999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
||||++||++|.++|.++|+... .+++|+++|++|||+++|||+++++|++++|++++|||++|+++|||
T Consensus 328 gtgT~~gD~~E~~al~~~fg~~~----------~~~~v~s~K~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p 397 (438)
T 2iwz_A 328 ATSTPLGDAAENKAIKHLFKDHA----------YALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEP 397 (438)
T ss_dssp CCSCHHHHHHHHHHHHHHHGGGG----------GTSEEECCHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSCCCT
T ss_pred CCCCcccCHHHHHHHHHHHhccC----------CCcceecchhhhcCCHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCC
Confidence 99999999999999999997421 45899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
.++++ +++++.++|.. .++|++++|||||||+|+|+||+++
T Consensus 398 ~~~~~----~v~~~~~~~~~----~~~~~a~~~sfGfGG~na~~vl~~~ 438 (438)
T 2iwz_A 398 EFDLN----YVPLKAQEWKT----EKRFIGLTNSFGFGGTNATLCIAGL 438 (438)
T ss_dssp TCCSB----CCBSSCEECCC----SSSCEEEEEEEETTTEEEEEEEECC
T ss_pred CCCcc----ccCCCcccCCC----CCccEEEEecCcCCCeeEEEEEeeC
Confidence 99887 57778888852 3578999999999999999999864
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-76 Score=666.97 Aligned_cols=398 Identities=26% Similarity=0.375 Sum_probs=354.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|+| .++++||++|.+|++++++++ ||+... ...++++++++ ||+.| +|+++++
T Consensus 7 ~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~--------~~~~~~~~i~~---fd~~~-~~~~~~~ 71 (416)
T 1e5m_A 7 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPIT--RFDASD--------QACRFGGEVKD---FDATQ-FLDRKEA 71 (416)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCCTT--------SSCCEEECCCS---CCGGG-TSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCeEeeCC--cccccc--------CccceeEEeCC---CCccc-cCCHHHH
Confidence 579999999999998 899999999999999999986 464221 12346777654 99987 4999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||++++++++.++|||+|++.+++...... .....+.++.+++...++++++|+
T Consensus 72 ~~~d~~~~l~l~aa~~Al~dAg~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia 151 (416)
T 1e5m_A 72 KRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTA 151 (416)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999988765322211 112245667777888889999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----CCCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----RDGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----~~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|..+++++ +++.|+|||.+++
T Consensus 152 ~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~ 231 (416)
T 1e5m_A 152 INLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 231 (416)
T ss_dssp HHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCC
T ss_pred HHhCCCCceeCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCC
Confidence 99999999999999999999999999999999999999999999988998888999999998 4789999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++||+++++|+++|++||++|+|+++++||.+...+.|++.++.++|++||+++|++|+||||||+|||||
T Consensus 232 G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hgtgt 311 (416)
T 1e5m_A 232 GFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTST 311 (416)
T ss_dssp SBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSC
T ss_pred CceeeeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCCEEEEECCCC
Confidence 99999999999999999999999999999999999999987444445778999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+++|++|.++|.++|+... .+++|+++|+++||+++|||+++++|++++|++++|||++||++|||.+++
T Consensus 312 ~~~D~~E~~al~~~~g~~~----------~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~ 381 (416)
T 1e5m_A 312 PANDVTETRAIKQALGNHA----------YNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDL 381 (416)
T ss_dssp HHHHHHHHHHHHHHHGGGG----------GGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCS
T ss_pred cCcCHHHHHHHHHHHcccC----------CCCeeeCcchhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Confidence 9999999999999997521 358899999999999999999999999999999999999999999999987
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+ +++.+.++| .+|++++|||||||+|+|+||++|
T Consensus 382 ~----~v~~~~~~~-------~~~~a~~~sfGfGG~n~~~vl~~~ 415 (416)
T 1e5m_A 382 D----YVPGQSRAL-------IVDVALSNSFGFGGHNVTLAFKKY 415 (416)
T ss_dssp C----CCBSSCEEC-------CCSEEEEEEEETTTEEEEEEEECC
T ss_pred c----ccCCccccC-------CCCEEEEccccCCCeeEEEEEEeC
Confidence 6 455566666 468999999999999999999986
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-76 Score=673.08 Aligned_cols=401 Identities=23% Similarity=0.335 Sum_probs=353.5
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
|+++||||||||++|+| .++++||++|.+|++++++++ ||+... ....+++++ .||+.||+|+++
T Consensus 1 M~~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~--------~~~~~~~~~----~fd~~~~~i~~~ 65 (424)
T 1tqy_A 1 MKRRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRIS--FFDPSP--------YRSQVAAEA----DFDPVAEGFGPR 65 (424)
T ss_dssp --CCEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECC--SSCCTT--------SSCCEEECC----CCCHHHHTCCHH
T ss_pred CCCCEEEEeeEEECCCC-CCHHHHHHHHHcCCCceeeCC--Cccccc--------CCcceeEEe----ccCHhhcCCCHH
Confidence 45689999999999998 799999999999999999986 453221 112455655 599999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhh--------ccCCCCcccccCcchhHHH
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDY--------IKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~a 162 (831)
+++.|||+++|+++++++||+|||++++++++.++|||+|++.++|....... ......++..++...++++
T Consensus 66 ~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 145 (424)
T 1tqy_A 66 ELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVP 145 (424)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCCCCchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhccccccccc
Confidence 99999999999999999999999999999999999999999988875432211 1123445555555555444
Q ss_pred H----HHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCC
Q psy11395 163 N----RISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGIC 233 (831)
Q Consensus 163 ~----ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~ 233 (831)
+ +|++.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|..++++++ ++.|
T Consensus 146 ~~~~~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~ 225 (424)
T 1tqy_A 146 SVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHAS 225 (424)
T ss_dssp THHHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCC
T ss_pred chhHhHHHHhcCCCCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCc
Confidence 4 999999999999999999999999999999999999999999999999889988889999999986 6899
Q ss_pred ccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcce
Q psy11395 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGY 313 (831)
Q Consensus 234 ~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ 313 (831)
+|||.+++|+++|||++++||+++++|+++|++||++|+|+++++||.+...+.|++.++.++|+++|+++|++|+||||
T Consensus 226 rpfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl~~~dId~ 305 (424)
T 1tqy_A 226 RPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDY 305 (424)
T ss_dssp CTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred cCCCCCCCceeeecceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 99999999999999999999999999999999999999999999999886666667789999999999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCC
Q psy11395 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFY 393 (831)
Q Consensus 314 ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~ 393 (831)
||+|||||+++|++|.++|.++|+... .+++|+++|+++||+++|||+++++|++++|+++.+||++|++
T Consensus 306 ve~Hgtgt~~gD~~E~~al~~~f~~~~----------~~~~v~s~k~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~ 375 (424)
T 1tqy_A 306 INAHGSGTRQNDRHETAAYKRALGEHA----------RRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLR 375 (424)
T ss_dssp EECCCCCCHHHHHHHHHHHHHHTGGGG----------GGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCC
T ss_pred EEecCccCcCcCHHHHHHHHHHhcccC----------CCCeeeccccccccChhhhHHHHHHHHHHHHHcCCcCCCCCCC
Confidence 999999999999999999999997521 4588999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 394 ~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
+|||.++++ +++.+.++| .+|++++|||||||+|+|+||++++
T Consensus 376 ~~~p~~~~~----~v~~~~~~~-------~~~~a~~~sfG~GG~n~~~vl~~~~ 418 (424)
T 1tqy_A 376 TSDPECDLD----YVPLEARER-------KLRSVLTVGSGFGGFQSAMVLRDAE 418 (424)
T ss_dssp SBBTTBCSC----CCBSSCEEC-------CCSEEEEEEEETTTEEEEEEEECHH
T ss_pred CCCCCCCcc----cCCCcccCC-------CCCEEEEccccCCceEEEEEEccCC
Confidence 999999876 455566665 3689999999999999999999875
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-76 Score=671.51 Aligned_cols=401 Identities=21% Similarity=0.291 Sum_probs=357.1
Q ss_pred cccCCCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCC
Q psy11395 5 NNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPF 84 (831)
Q Consensus 5 ~~~~~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~ 84 (831)
|+......++||||||||++|+| .+.++||++|.+|++++++++ ||+.... ..++++++++ ||+.|
T Consensus 1 ~~~~~~~~~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~~--------~~~~~~~v~~---fd~~~ 66 (415)
T 1tqy_B 1 MDYKDDDDKSVLITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPVT--RFDVSRY--------PATLAGQIDD---FHAPD 66 (415)
T ss_dssp ---------CEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECT--TTTGGGS--------SCCEEECCCS---CCHHH
T ss_pred CCcCCCCCCCEEEEeeEEECCCC-CCHHHHHHHHHcCCCcEEECC--cccccCC--------CcceEEEeCC---CCchh
Confidence 56667777899999999999998 799999999999999999996 5643211 2356777764 99998
Q ss_pred CCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcch
Q psy11395 85 FKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSM 158 (831)
Q Consensus 85 f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~ 158 (831)
| |++++++.|||+++|+++++++||+|||++++++++.++|||+|++.++|...... .....++++.+++...
T Consensus 67 ~-~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (415)
T 1tqy_B 67 H-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFY 145 (415)
T ss_dssp H-SCTTTGGGCCHHHHHHHHHHHHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSST
T ss_pred c-CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccc
Confidence 8 99999999999999999999999999999999999999999999998887543221 1223467777888889
Q ss_pred hHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC----CCCCCc
Q psy11395 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS----RDGICK 234 (831)
Q Consensus 159 ~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls----~~g~~~ 234 (831)
++++++|++.||++||+++|+++|+||++||++|+++|++| ||++||||+|.++++..+..|..+++|+ ++++|+
T Consensus 146 ~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~ 224 (415)
T 1tqy_B 146 AVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYL 224 (415)
T ss_dssp THHHHHHHHHHTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCCCSCGGGSCC
T ss_pred hHHHHHHHHHhCCCCceEeecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccCCCCCCCCcC
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999 889999
Q ss_pred cccCCCCcceecCceEEEEecchhhhhhCCC-ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcce
Q psy11395 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHD-NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGY 313 (831)
Q Consensus 235 ~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~-~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ 313 (831)
|||.+++|+++|||++++||+++++|+++|+ +||++|+|+++++||.+ ++.|+. ++.++|++||+++|++|+||||
T Consensus 225 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~--~~~p~~-~~~~ai~~al~~Agl~~~dId~ 301 (415)
T 1tqy_B 225 PFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAP--GSGRPA-GLERAIRLALNDAGTGPEDVDV 301 (415)
T ss_dssp TTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCT--TCCCCC-SHHHHHHHHHHHHTCCGGGCCE
T ss_pred CCCCCCCCcceeeeEEEEEECcHHHHHHCCCCceEEEEEEEEEccCCCC--CCCCCH-HHHHHHHHHHHHcCCCHhHCCE
Confidence 9999999999999999999999999999999 99999999999999987 677877 8999999999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCC
Q psy11395 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFY 393 (831)
Q Consensus 314 ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~ 393 (831)
||+|||||+++|++|+.++.++|+. ..++|+++|+|+||++||||+++++|++++|+++.|||++|++
T Consensus 302 ve~Hgtgt~~~D~~E~~al~~~~g~------------~~~~v~s~K~~~GH~~gAaG~~~~~~~~~~l~~~~ipp~~~~~ 369 (415)
T 1tqy_B 302 VFADGAGVPELDAAEARAIGRVFGR------------EGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVT 369 (415)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHCT------------TCSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCC
T ss_pred EEEeCCCCcCcCHHHHHHHHHHhCC------------CCceEeccchhhccChHHHHHHHHHHHHHHHhcCCcCCCCCCC
Confidence 9999999999999999999999964 2488999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 394 ~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
+|||.++++ +++++.++| .+|++++|||||||+|+|+||++++
T Consensus 370 ~~~p~~~~~----~v~~~~~~~-------~~~~a~~~sfGfgG~n~~~vl~~~~ 412 (415)
T 1tqy_B 370 SVPREYGID----LVLGEPRST-------APRTALVLARGRWGFNSAAVLRRFA 412 (415)
T ss_dssp CCCGGGCCE----ECBSSCBCC-------CCSEEEEEEEETTTEEEEEEEEEC-
T ss_pred CCCCCCCcc----ccCCCCccC-------CCCEEEEecCcCCCeEEEEEEecCC
Confidence 999999875 566666766 4689999999999999999999875
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-76 Score=669.37 Aligned_cols=403 Identities=24% Similarity=0.386 Sum_probs=360.4
Q ss_pred CCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCC
Q psy11395 9 NNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKIS 88 (831)
Q Consensus 9 ~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~ 88 (831)
....++||||||||++|+| .++++||++|++|++++++++ ||+... ...++++++++ ||+.+| |+
T Consensus 14 ~~~~~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~--------~~~~~~~~v~~---fd~~~~-i~ 78 (427)
T 3ho9_A 14 CVSKRRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLID--HFDTSA--------YATKFAGLVKD---FNCEDI-IS 78 (427)
T ss_dssp ---CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCCTT--------CSCCEEECCSS---CCCTTT-SC
T ss_pred CCCCCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCceeeCC--cccccc--------CccceeeEcCC---CChhhc-CC
Confidence 3456789999999999998 799999999999999999986 454321 12356777655 999999 99
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHH
Q psy11395 89 PIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 89 ~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a 162 (831)
+++++.|||++||+++++++||+|||++++++++.++|||+|++.+++..... ......+.++..++...++++
T Consensus 79 ~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 158 (427)
T 3ho9_A 79 RKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 158 (427)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHCCCCcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHH
Confidence 99999999999999999999999999999999999999999998766543221 112235667778888899999
Q ss_pred HHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCcccc
Q psy11395 163 NRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFD 237 (831)
Q Consensus 163 ~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd 237 (831)
++|++.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+..|...++++. ++.|+|||
T Consensus 159 ~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd 238 (427)
T 3ho9_A 159 GHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 238 (427)
T ss_dssp HHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTB
T ss_pred HHHHHHhCCCCCeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 46899999
Q ss_pred CCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 238 ~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
.+++|+++|||++++||+++++|+++|++||++|+|+++++||.+.....|+..++.++|++||++|||+|+||||||+|
T Consensus 239 ~~~~G~v~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~H 318 (427)
T 3ho9_A 239 KERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAH 318 (427)
T ss_dssp TTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred CCCCCceeeeeEEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEec
Confidence 99999999999999999999999999999999999999999998755555688999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
||||+.+|++|..++.++|+... .+++++++|+++||++||||+++++|++++|++++|||++|+++|||
T Consensus 319 gtgT~~~d~~e~~a~~~~~g~~~----------~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~ 388 (427)
T 3ho9_A 319 GTSTPAGDKAEAQAVKTIFGEAA----------SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDE 388 (427)
T ss_dssp CCSCHHHHHHHHHHHHHHHGGGG----------GTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCT
T ss_pred CCcCCCcCHHHHHHHHHHhcccC----------CCeEEecchHhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 99999999999999999997521 46889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
.++++ +++.+.++|. ++|++++|||||||+|+|+||+++
T Consensus 389 ~~~~~----~~~~~~~~~~------~~~~a~~~sfGfgG~na~~vl~~~ 427 (427)
T 3ho9_A 389 GCDLD----FVPHEARQVS------GMEYTLCNSFGFGGTNGSLIFKKI 427 (427)
T ss_dssp TCCCB----CCBSSCEECS------SCCEEEEEEEETTTEEEEEEEECC
T ss_pred CCCcc----ccccccccCC------CCCEEEEeCccCCceeEEEEEEeC
Confidence 99987 5666777773 468999999999999999999974
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-75 Score=664.69 Aligned_cols=399 Identities=25% Similarity=0.366 Sum_probs=354.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|+| .++++||++|.+|++++++++ ||+... ...++++++++ ||+.| +|+++++
T Consensus 28 ~~vaI~G~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~--------~~~~~~~~i~~---fd~~~-~~~~~~~ 92 (437)
T 2gqd_A 28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKIT--RIDTEP--------YSVHLAGELKN---FNIED-HIDKKEA 92 (437)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCCTT--------SSCCEEECCSS---CCGGG-TSCSTTT
T ss_pred CCEEEEEeeEECCCC-CCHHHHHHHHHcCCCceeeCC--cccccc--------CccceeEEeCC---CChhc-CCCHHHH
Confidence 689999999999998 899999999999999999986 453221 12346677654 99887 6999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||++++++++.++|||+|++.+++...... .....+.++.+++...++++++|+
T Consensus 93 ~~~d~~~~l~l~aa~~AL~dAGl~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia 172 (437)
T 2gqd_A 93 RRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVS 172 (437)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999988775432211 112245667777778889999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC----CCCCCccccCCCCc
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS----RDGICKTFDKNADG 242 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls----~~g~~~~Fd~~a~G 242 (831)
+.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|..+++++ +++.|+|||.+++|
T Consensus 173 ~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G 252 (437)
T 2gqd_A 173 IDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDG 252 (437)
T ss_dssp HHHTCCSSEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSSCTTCTTCCS
T ss_pred HHhCCCCceEEecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccCCCCCccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999988999889999999998 47899999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
+++|||++++||+++++|+++|++||++|+|+++++||.+...+.|+..++.++|++||+++||+|+||||||+|||||+
T Consensus 253 ~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~ 332 (437)
T 2gqd_A 253 FVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTP 332 (437)
T ss_dssp BCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCH
T ss_pred ceeeceEEEEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhhCCEEEEECCCCc
Confidence 99999999999999999999999999999999999999864444446789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCC
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLD 402 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~ 402 (831)
++|++|+++|.++|+... .+++|+++|+++||+++|||+++++|++++|+++.+||++||++|||.++++
T Consensus 333 ~~D~~E~~al~~~fg~~~----------~~~~v~s~k~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~ 402 (437)
T 2gqd_A 333 VGDLNEVKAIKNTFGEAA----------KHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLD 402 (437)
T ss_dssp HHHHHHHHHHHHHHGGGG----------TSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSCCSSCCSB
T ss_pred CcCHHHHHHHHHHHhccC----------CCceeecchhhhcCChhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Confidence 999999999999997521 4689999999999999999999999999999999999999999999999876
Q ss_pred CCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 403 ~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
+++.+.++| .+|++++|||||||+|+|+||++++
T Consensus 403 ----~v~~~~~~~-------~~~~a~~~sfGfGG~na~~vl~~~~ 436 (437)
T 2gqd_A 403 ----IVPNEAQDL-------DITYAMSNSLGFGGHNAVLVFKKFE 436 (437)
T ss_dssp ----CCBSSCEEC-------CCSEEEEEEECGGGEEEEEEEECCC
T ss_pred ----cCCCccccC-------CCCEEEEccCcCCCeeEEEEEEecc
Confidence 455566655 4689999999999999999999863
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-75 Score=660.25 Aligned_cols=393 Identities=23% Similarity=0.318 Sum_probs=353.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|+| .++++||++|.+|+++++++|. |+... ....++++.++ .||+.+| |+++++
T Consensus 6 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~--~~~~~-------~~~~~~~~~v~---~fd~~~~-i~~~~~ 71 (412)
T 4ewg_A 6 KRVVITGMGGVTALG-SRWDEIEAALKAGRNAVRRMPD--WDYFE-------SLHTRLAAPLP---GFAQPAD-WPRKKT 71 (412)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCCEECGG--GGGSS-------SCCCCEEBCCS---CCCCCTT-SCHHHH
T ss_pred CEEEEEeeEEECCCc-CCHHHHHHHHHcCCCceeeCCc--ccccc-------CCccceeeecC---CCChhhh-CCHHHH
Confidence 579999999999998 7999999999999999999985 32110 11234556554 4999999 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCC-CCCCCCCCcceeEEeccccchHHHH------hhhccCCCCcccccCcchhHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIGASGSDYTRLL------SDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~-~~~~~~~~~~gV~~G~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
+.|||+++|+++++++||+|||+ ++++++..++|||+|++.+++.... .......+.++.+++...++++++|
T Consensus 72 ~~~d~~~~l~l~aa~~Al~dAGl~~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 151 (412)
T 4ewg_A 72 RSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNV 151 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCTTCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHhcCCCCccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHH
Confidence 99999999999999999999999 7888999999999999887654322 2222335677777888899999999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNA 240 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a 240 (831)
++.||++||+++|+++|+||++||++|+++|++|+||++||||+|. +++.....|...+.+++ ++.|+|||.++
T Consensus 152 a~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~ 230 (412)
T 4ewg_A 152 SLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKR 230 (412)
T ss_dssp HHHTTCCSCEEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTC
T ss_pred HHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999 88888889999999886 68999999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||++++||+++++|+++|++||++|+|+++++||.+ ++.|+..++.++|++||++||++|+||||||+||||
T Consensus 231 ~G~~~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~--~~~p~~~~~~~ai~~Al~~Agl~~~dId~ve~Hgtg 308 (412)
T 4ewg_A 231 DGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH--MTQPTASTMARAMQLALEDAKLDANAIAYVNAHGTS 308 (412)
T ss_dssp CCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSC--SSSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCC
T ss_pred CCCceECeEEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCC
Confidence 999999999999999999999999999999999999999975 889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCC-
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNI- 399 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i- 399 (831)
|+++|++|..+|.++|+. .++|+++|+++||++||||+++++|++++|++++|||++|+++|||.+
T Consensus 309 t~~~D~~E~~al~~~~~~-------------~~~v~s~K~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~ 375 (412)
T 4ewg_A 309 TDRGDVAESQATARTFGE-------------RMPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACA 375 (412)
T ss_dssp CHHHHHHHHHHHHHHHCT-------------TCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTSC
T ss_pred CccccHHHHHHHHHHcCC-------------CCeeeCccccccccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCccc
Confidence 999999999999999973 378999999999999999999999999999999999999999999998
Q ss_pred CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 400 KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+++ +++++.++| +++++++|||||||+|+|+||+++
T Consensus 376 ~~~----~v~~~~~~~-------~~~~~~~~sfgfGG~na~~vl~~~ 411 (412)
T 4ewg_A 376 PLD----YIRGEARAI-------DAEYVMSNNFAFGGINTSLIFRRV 411 (412)
T ss_dssp CCE----ECCSSCEEC-------CCSEEEEEEEEGGGEEEEEEEECC
T ss_pred ccc----cccCcccCC-------CCCEEEEeeecCCcceEEEEEeeC
Confidence 665 455555544 468999999999999999999976
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-75 Score=656.63 Aligned_cols=399 Identities=23% Similarity=0.352 Sum_probs=356.5
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|+| .++++||++|++|++++++++ +|+.... ...+++.+ +.||+.+| |+++++
T Consensus 4 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~~--------~~~~~~~v---~~fd~~~~-i~~~~~ 68 (413)
T 3o04_A 4 RRVVVTGIGAVTPIG-NDAETSWENAKKGVNGVAKMT--RLNPDDF--------PVKIAAEL---KDFDVEKY-LEKKEA 68 (413)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCGGGS--------SCCEEECC---SSCCGGGT-SCHHHH
T ss_pred CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCceeeCC--ccccccC--------cccccccc---CCCChhhc-cCHHHH
Confidence 679999999999998 899999999999999999986 3432211 12344544 45999999 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||++||+++++++||+|||++++++++.++|||+|++.+++...... .....+.++.+++...++++++|+
T Consensus 69 ~~~d~~~~l~l~Aa~~AL~dAGl~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia 148 (413)
T 3o04_A 69 RKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVS 148 (413)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHcCCChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHH
Confidence 99999999999999999999999999999999999999987654432221 123356777788888999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC----CCCCCccccCCCCc
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS----RDGICKTFDKNADG 242 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls----~~g~~~~Fd~~a~G 242 (831)
+.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.++++..+..|...+.++ +++.|+|||.+++|
T Consensus 149 ~~lgl~gp~~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~g 228 (413)
T 3o04_A 149 IRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDG 228 (413)
T ss_dssp HHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSCCTTBTTCCS
T ss_pred HHhCCCCcceeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccCCCCCCCCcCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 67889999999999
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
+++|||++++||+++++|+++|++||++|+|++.++||.+.....|+..++.++++++|+++|++|+||||||+|||||+
T Consensus 229 ~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ve~HgtgT~ 308 (413)
T 3o04_A 229 FIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTP 308 (413)
T ss_dssp BCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCH
T ss_pred ceEeccEEEEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCc
Confidence 99999999999999999999999999999999999999886666777889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCC
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLD 402 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~ 402 (831)
++|++|.++|.++|+... .+++|+++|+++||++||||+++++|++++|++++|||++|+++|||.++++
T Consensus 309 ~~d~~e~~al~~~~~~~~----------~~~~v~s~k~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~ 378 (413)
T 3o04_A 309 YNDEYETQAIKTVFGEHA----------KKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLD 378 (413)
T ss_dssp HHHHHHHHHHHHHHGGGT----------TTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSBCSSCCSC
T ss_pred ccCHHHHHHHHHHhcccC----------CCCceecccccccccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCcc
Confidence 999999999999997531 4689999999999999999999999999999999999999999999999987
Q ss_pred CCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 403 ~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
+++.+.++ ..+|++++|||||||+|+|+||++++
T Consensus 379 ----~~~~~~~~-------~~~~~~~~~sfgfgG~na~~vl~~~~ 412 (413)
T 3o04_A 379 ----YVPNEARE-------ANVNVVISNSFGFGGHNATLVFKRIE 412 (413)
T ss_dssp ----CCBSSCEE-------CCCCEEEEEEEETTTEEEEEEEECCC
T ss_pred ----cCCCcccC-------CCCCEEEEeCccCCceEEEEEEEeCC
Confidence 33333332 35789999999999999999999873
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-75 Score=659.71 Aligned_cols=389 Identities=22% Similarity=0.305 Sum_probs=344.2
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|+| .++++||++|.+|+++++++| +|+.. ....+++++++ ||+.+| |+++++
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~--------~~~~~~~~~v~----fd~~~~-~~~~~~ 65 (406)
T 2vba_A 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQ--ELKDS--------GMRSHVWGNVK----LDTTGL-IDRKVV 65 (406)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECH--HHHHT--------TCSCCEEECCC----CCCTTS-SCHHHH
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeEEeCC--ccccc--------CCccceEEEec----CChhhc-CCHHHH
Confidence 579999999999998 899999999999999999987 34211 11234566664 999999 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCC-CcceeEEeccccchHHHHhhhc-------cCCCCcccccCcchhHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSG-SNTGVFIGASGSDYTRLLSDYI-------KIPVNAHHCIGNSMAVLANR 164 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~-~~~gV~~G~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~a~r 164 (831)
+.|||+++|+++++++||+|||+++++++. .++|||+|++.+++......+. ...++++.++++..++++++
T Consensus 66 ~~~d~~~~l~l~aa~~Al~dAg~~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 145 (406)
T 2vba_A 66 RFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSAC 145 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHH
Confidence 999999999999999999999999888887 8999999999887754322111 11245666777788999999
Q ss_pred HHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC------CCCCCccccC
Q psy11395 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDGICKTFDK 238 (831)
Q Consensus 165 is~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls------~~g~~~~Fd~ 238 (831)
|++.||++||+++|+++|+||++||++|+++|++|+||++||||+|.++.+..+. |..+++++ +++.|+|||.
T Consensus 146 is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~ 224 (406)
T 2vba_A 146 LATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDA 224 (406)
T ss_dssp HHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBT
T ss_pred HHHhccCCCceeeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcC
Confidence 9999999999999999999999999999999999999999999999988887777 99999998 5789999999
Q ss_pred CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 239 ~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
+++|+++|||++++|||++++|+++|++||++|+|+++++||.+ ++.|+..++.++|++||+++| +||||||+||
T Consensus 225 ~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~--~t~p~~~~~~~ai~~al~~ag---~dId~ve~Hg 299 (406)
T 2vba_A 225 HRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGEGAVRCMKMAMHGVD---TPIDYLNSHG 299 (406)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSC--TTSCCSHHHHHHHHHHHTTCC---SCCCEEECCC
T ss_pred CCCceEeeceEEEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCC--CCCCCHHHHHHHHHHHHhhCC---CCccEEEeeC
Confidence 99999999999999999999999999999999999999999975 789999999999999999999 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~ 398 (831)
|||+++|++|.++|.++|+. ..++|+++|+++||+++|||+++++|++++|+++.|||++|+++|||.
T Consensus 300 tgT~~gD~~E~~al~~~fg~------------~~~~v~s~K~~~GH~~gAaG~~~~i~~~l~l~~~~ipp~~~~~~~~~~ 367 (406)
T 2vba_A 300 TSTPVGDVKELAAIREVFGD------------KSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQ 367 (406)
T ss_dssp CSCHHHHHHHHHHHHHHHTT------------CCCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTT
T ss_pred ccCcccCHHHHHHHHHHhCc------------CCCceeCchhhhcccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCC
Confidence 99999999999999999964 237899999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 399 IK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 399 i~-~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
++ ++ +++...+ . .+|++++|||||||+|+|+||++++
T Consensus 368 ~~~~~----~v~~~~~-------~-~~~~a~~~sfGfgG~na~~vl~~~~ 405 (406)
T 2vba_A 368 AAGLN----IVTETTD-------R-ELTTVMSNSFGFGGTNATLVMRKLK 405 (406)
T ss_dssp CTTSE----ECCSCEE-------C-CCCEEEEEEEETTTEEEEEEEECC-
T ss_pred ccccc----cCCcccC-------C-CCCEEEEcCCCCCCeEEEEEEEeCC
Confidence 87 43 2222211 1 5789999999999999999999863
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-74 Score=652.81 Aligned_cols=402 Identities=23% Similarity=0.367 Sum_probs=357.2
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCccccccc----CcccCCCCCCCC
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLK----DIECFDAPFFKI 87 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~----~~~~FD~~~f~i 87 (831)
.++|||||||+++|.| .++++||++|++|++++++++ ||+.... ...+++++. +++.||+.|| |
T Consensus 9 ~~~~viTG~G~vsp~g-~~~~~~w~~L~~G~s~i~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~fd~~~~-i 76 (428)
T 3kzu_A 9 MRRVVITGLGLVSPLA-SGVEETWKRLLAGESGARRVT--EFEVDDL--------ACQIACRIPVGDGTNGTFNPDLH-M 76 (428)
T ss_dssp CCCEEEEEEEEECSSC-BSHHHHHHHHHTTCCCEEECC--SSCCTTS--------SCCEEECCCBSSSSTTCBCGGGT-S
T ss_pred ccceEEEeceEECCCc-CCHHHHHHHHHcCCCeeeeCC--ccccccC--------cCceeeEecccccccccCChhhc-C
Confidence 3679999999999998 899999999999999999997 4533221 123455554 5667999999 9
Q ss_pred ChhhhccCCHHHHHHHHHHHHHHHHcCCCCCC-CCCCcceeEEeccccchHHHH------hhhccCCCCcccccCcchhH
Q psy11395 88 SPIEAESMDPQQRILLELSWKTIEDAGYDSSK-LSGSNTGVFIGASGSDYTRLL------SDYIKIPVNAHHCIGNSMAV 160 (831)
Q Consensus 88 ~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~-~~~~~~gV~~G~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 160 (831)
++++++.|||++||+++++++||+|||+++++ +++.++|||+|++.+.+.... .......+.++..++...++
T Consensus 77 ~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (428)
T 3kzu_A 77 DPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINL 156 (428)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHhcCCChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhh
Confidence 99999999999999999999999999999988 888899999999876543221 22223356778888999999
Q ss_pred HHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC------CCCc
Q psy11395 161 LANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD------GICK 234 (831)
Q Consensus 161 ~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~------g~~~ 234 (831)
++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.+++|..+..|...+.++.. +.|+
T Consensus 157 ~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~ 236 (428)
T 3kzu_A 157 ASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASR 236 (428)
T ss_dssp HHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCC
T ss_pred HHHHHHHHcCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 6899
Q ss_pred cccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceE
Q psy11395 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314 (831)
Q Consensus 235 ~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~i 314 (831)
|||.+++|+++|||++++||+++++|+++|++||++|+|+++++||.+.....|+..++.++++++|++||++|+|||||
T Consensus 237 pfd~~~~G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~v 316 (428)
T 3kzu_A 237 PYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYI 316 (428)
T ss_dssp TTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred CcccCCCceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHeeEE
Confidence 99999999999999999999999999999999999999999999998755555677899999999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCC
Q psy11395 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394 (831)
Q Consensus 315 e~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~ 394 (831)
|+||||| .+|++|++++.++|+... .++++++.|+++||++||||+++++|++++|++++|||++|+++
T Consensus 317 e~HgtgT-~~d~~e~~al~~~~g~~~----------~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~ 385 (428)
T 3kzu_A 317 NAHGTST-MADTIELGAVERVVGEAA----------AKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDN 385 (428)
T ss_dssp ECCCCSS-TTHHHHHHHHHHHHGGGG----------GGCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSS
T ss_pred EecCCcc-hhhHHHHHHHHHHhccCC----------CceeeCCchhhhCCCchhhHHHHHHHHHHHhccCccCCCCCCCC
Confidence 9999999 999999999999997531 46889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 395 ~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
|||.++++ +++.+.++| .+|+++||||||||+|+|+||++|+
T Consensus 386 ~~~~~~~~----~~~~~~~~~-------~~~~a~~~sfGfgG~na~~vl~~~~ 427 (428)
T 3kzu_A 386 PAAQTRID----LVPHKPRER-------KIDVALSNSFGFGGTNASLVLRRYT 427 (428)
T ss_dssp BSSCCSSB----CCBSSCEEC-------CCSEEEEEEEETTTEEEEEEEECCC
T ss_pred CCCCCCcc----cCCCCCcCC-------CCCEEEEeCcccChhhEEEEEeecC
Confidence 99999876 344444433 4689999999999999999999874
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-74 Score=656.05 Aligned_cols=399 Identities=22% Similarity=0.299 Sum_probs=355.4
Q ss_pred cCCCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCC
Q psy11395 7 SINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFK 86 (831)
Q Consensus 7 ~~~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~ 86 (831)
+|..| ++|+||||||++|+| .++++||++|.+|++++.++| ||+... ...+++++++ .||+.+|
T Consensus 18 ~~m~m-~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~--------~~~~~~~~v~---~fd~~~~- 81 (430)
T 1ox0_A 18 SHMKL-NRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGIT--KFDHSD--------FDVHNAAEIQ---DFPFDKY- 81 (430)
T ss_dssp SSCCC-CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECC--SSCCTT--------SSCCEEECCS---SCCHHHH-
T ss_pred ccccC-CCEEEEEEEEECCCc-CCHHHHHHHHHcCCCeeeeCC--cccccC--------Cccceeeecc---CCChhhc-
Confidence 45555 679999999999998 899999999999999999997 454221 1234566665 4999887
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAV 160 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~ 160 (831)
|++++++.|||+++|+++++++||+|||++++++++.++|||+|++.+++..... ......+.++.+++...++
T Consensus 82 ~~~~~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (430)
T 1ox0_A 82 FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNM 161 (430)
T ss_dssp CCGGGGGTCCHHHHHHHHHHHHHHHHTTCCTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTH
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhH
Confidence 9999999999999999999999999999999999999999999998877533221 1122245667778888899
Q ss_pred HHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC----CCCCCccc
Q psy11395 161 LANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS----RDGICKTF 236 (831)
Q Consensus 161 ~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls----~~g~~~~F 236 (831)
++++|++.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|..+++++ +++.|+||
T Consensus 162 ~a~~is~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pF 241 (430)
T 1ox0_A 162 ASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPF 241 (430)
T ss_dssp HHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCSSTTSSSCTT
T ss_pred HHHHHHHHhcCCCceEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988998888999999999 68899999
Q ss_pred cCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCC--CHHHHHHHHHHHHHHcCCCCCCcceE
Q psy11395 237 DKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQSYLLQKAWNESNIDVRSLGYI 314 (831)
Q Consensus 237 d~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p--~~~~~~~~i~~al~~Agl~~~dId~i 314 (831)
|.+++|+++|||++++||+++++|+++|++||++|+|+++++||.+ ++.| +..++.++|+++|+++|++++|||||
T Consensus 242 d~~~~g~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~--~~~p~~~~~~~~~ai~~al~~Agl~~~dId~v 319 (430)
T 1ox0_A 242 DKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH--MTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 319 (430)
T ss_dssp BTTCCSBCBCCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSC--SSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCE
T ss_pred CCCCCCccccceEEEEEECcHHHHHhCCCceEEEEEEEEEecCCCC--CCCCCCChHHHHHHHHHHHHHhCcCHHHcCEE
Confidence 9999999999999999999999999999999999999999999986 4555 67899999999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCC
Q psy11395 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394 (831)
Q Consensus 315 e~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~ 394 (831)
|+|||||+++|++|..++.++|+. +++|+++|+++||+++|||+++++|++++|+++.|||++||++
T Consensus 320 e~Hgtgt~~~D~~E~~al~~~~g~-------------~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~ 386 (430)
T 1ox0_A 320 NAHGTSTPANEKGESGAIVAVLGK-------------EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSE 386 (430)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHHCS-------------SSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCS
T ss_pred EEeCCcCcccCHHHHHHHHHHhCC-------------CceecccccccccchhhHHHHHHHHHHHHHhcCccCCCCCCCC
Confidence 999999999999999999999962 4789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 395 ~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
|||.++++ +++.+.++| .+|++++|||||||+|+|+||++++
T Consensus 387 ~~p~~~~~----~v~~~~~~~-------~~~~a~~~sfGfGG~na~~vl~~~~ 428 (430)
T 1ox0_A 387 VSDYIEAN----VVYGQGLEK-------EIPYAISNTFGFGGHNAVLAFKRWE 428 (430)
T ss_dssp BCTTCCSE----ECBSSCEEC-------CCSEEEEEEEETTTEEEEEEEECCC
T ss_pred CCCCCCcc----cCCCCCcCC-------CCCEEEEeCccCCCceEEEEEeecC
Confidence 99999865 455554444 4689999999999999999999874
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-74 Score=653.50 Aligned_cols=396 Identities=24% Similarity=0.343 Sum_probs=353.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|+| .++++||++|.+|++++++++ ||+... ...++++++ .||+.|| |+++++
T Consensus 2 ~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~~~~~~--~~~~~~--------~~~~~~~~~----~fd~~~~-~~~~~~ 65 (408)
T 1j3n_A 2 RRVVVTGLGALTPIG-VGQEAFHKAQLAGKSGVRPIT--RFDASA--------LPVRIAAEV----DVDPGAY-LDRKEL 65 (408)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECC--SSCCTT--------SSCCEEECC----CCCGGGT-SCHHHH
T ss_pred CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCeeeecc--ccCccc--------CccceEEEE----ccChhhc-CCHHHH
Confidence 579999999999998 799999999999999999986 453211 123467777 3999987 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||+++++++..++|||+|++.++|..+... .....+.++.+++...++++++|+
T Consensus 66 ~~~d~~~~l~~~aa~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 145 (408)
T 1j3n_A 66 RRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIA 145 (408)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877533221 122245667777888889999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|...+++++ ++.|+|||.+++
T Consensus 146 ~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~d 225 (408)
T 1j3n_A 146 MRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225 (408)
T ss_dssp HHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCC
T ss_pred HHhCCCCceeCccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCC
Confidence 999999999999999999999999999999999999999999999899999999999999986 468999999999
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
|+++|||++++||+++++|+++|++||++|+|+++++||.+.....|+..++.++|+++|+++|++|+||||||+|||||
T Consensus 226 g~v~geGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt 305 (408)
T 1j3n_A 226 GFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTST 305 (408)
T ss_dssp CBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSC
T ss_pred ceEEeeeEEEEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcC
Confidence 99999999999999999999999999999999999999987555555788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
++||++|..++.++|+... .+++++++|+++||+++|||+++++|++++|++++|||++|+++|||.+++
T Consensus 306 ~~gD~~E~~al~~~~g~~~----------~~~~v~s~k~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~ 375 (408)
T 1j3n_A 306 PVGDRAEVLAIKRVFGDHA----------KRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDL 375 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------TTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCS
T ss_pred cccCHHHHHHHHHHhcCcC----------CCceEECchhhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Confidence 9999999999999997521 468899999999999999999999999999999999999999999999987
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+- ++ +.++| ++|++++|||||||+|+|+||+++
T Consensus 376 ~~----v~-~~~~~-------~~~~a~~~sfGfGG~na~~vl~~~ 408 (408)
T 1j3n_A 376 DF----VP-EPREA-------KVDYALSNSFAFGGHNAVLAFKRV 408 (408)
T ss_dssp BC----CS-SCEEC-------CCSEEEEEEECTTSEEEEEEEECC
T ss_pred cc----CC-CCcCC-------CCCEEEEecccCCcceEEEEEecC
Confidence 62 33 55555 368999999999999999999874
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-74 Score=657.41 Aligned_cols=392 Identities=21% Similarity=0.302 Sum_probs=345.9
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|+||||||++|+| .++++||++|++|+++++++|. |+.. ....+++|+. .||+.+| |+++++
T Consensus 23 ~~V~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~--~~~~--------~~~~~~~g~~----~fd~~~~-i~~~~~ 86 (428)
T 3mqd_A 23 RRVVVTGMGIVSSIG-SNTEEVTASLREAKSGISRAEE--YAEL--------GFRCQVHGAP----DIDIESL-VDRRAM 86 (428)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHH--HHHT--------TCSCCEEECC----CCCHHHH-SCTGGG
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCcceeCCc--cccc--------CCCccccccc----CCChhhc-CCHHHH
Confidence 689999999999998 8999999999999999999874 3211 1122345552 5999999 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHH------HhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRL------LSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||++++++++.++|||+|++.++|... ........+.++..+++..++++++|+
T Consensus 87 ~~~d~~~~l~~~aa~~Al~dAGl~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 166 (428)
T 3mqd_A 87 RFHGRGTAWNHIAMDQAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLA 166 (428)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCCHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHcCCChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHH
Confidence 99999999999999999999999999999999999999998776522 111223356778888889999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC------CCCCccccCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDKNA 240 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~------~g~~~~Fd~~a 240 (831)
+.||++||+++|+++|+||++||++|+++|++|+||++||||+|.+ ++.....|..++.++. ++.|+|||.++
T Consensus 167 ~~lgl~gp~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~~-s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~ 245 (428)
T 3mqd_A 167 TFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDL-DWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNR 245 (428)
T ss_dssp HHTTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECC-CHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTC
T ss_pred HHcCCCCceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeeccc-chHHHHHHHHhhhhcccccCCcccccCcccCCC
Confidence 9999999999999999999999999999999999999999999995 4555666889998884 58999999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||+|+|||+++++|+++|++||++|+|+++++||.+ ++.|++.++.++|++||+ |++ +||||||+||||
T Consensus 246 ~G~v~gEGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~--~~~P~~~~~~~ai~~Al~--gl~-~dId~ve~Hgtg 320 (428)
T 3mqd_A 246 DGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYD--MVAPSGEGAIRCMKMALS--TVT-SKIDYINPHATS 320 (428)
T ss_dssp CSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSC--SSSCCSHHHHHHHHHHHT--TCC-SCCCEEECCCCS
T ss_pred CCcccccceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCC--CCCCCHHHHHHHHHHHHh--CCc-cccCEEEEeCCC
Confidence 999999999999999999999999999999999999999975 789999999999999999 999 999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
|++||++|+.+|.++|+... ..++|+++|++|||++||||+++++|++++|++++|||++|+++|||.++
T Consensus 321 T~~~D~~E~~al~~~~~~~~----------~~~~v~s~K~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~ 390 (428)
T 3mqd_A 321 TPAGDAPEIEAIRQIFGAGD----------VCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFA 390 (428)
T ss_dssp CHHHHHHHHHHHHHHHCSGG----------GSCCBCCTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGT
T ss_pred CCCcCHHHHHHHHHHhcccC----------CCceeecchhhhcccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCcccc
Confidence 99999999999999997311 34789999999999999999999999999999999999999999999886
Q ss_pred -CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 401 -LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 401 -~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
++ ++++..+| ..++++++|||||||+|+|+||++|+
T Consensus 391 ~~~-----~~~~~~~~------~~~~~~~~~sfGfGG~Na~~vl~~~~ 427 (428)
T 3mqd_A 391 DMP-----IVRKRIDN------VQLNTVLSNSFGFGGTNATLVFQRYQ 427 (428)
T ss_dssp TSC-----BCSSCEES------CCCCEEEEEEEETTTEEEEEEEECCC
T ss_pred cCC-----ccCCcccc------CCCCEEEEecCcCCcceEEEEEeecC
Confidence 33 33333333 35789999999999999999999874
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-74 Score=659.30 Aligned_cols=414 Identities=24% Similarity=0.304 Sum_probs=358.3
Q ss_pred CCCcccCCCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccC-----
Q psy11395 2 EINNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD----- 76 (831)
Q Consensus 2 ~~~~~~~~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~----- 76 (831)
|++..-...|+++||||||||++|+| .++++||++|++|++++++++ +|+... ...+++|++++
T Consensus 13 ~~~~~~~~~m~~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~s~i~~~~--~~~~~~--------~~~~~~g~v~~~~~~~ 81 (451)
T 4ddo_A 13 EAQTQGPGSMTLRVVVTGIGIVSPLG-CGKELVWQRLIGGGSGLRRLG--DDIAGE--------LSAKVGGTVQDVAEDP 81 (451)
T ss_dssp -----------CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECC--HHHHTT--------SSCCEEECCCCTTTCT
T ss_pred eecccCcccCCCCEEEEEeEEECCCC-CCHHHHHHHHHcCCCeeeeCC--cccccc--------ccCccceEcccccccc
Confidence 33444445577899999999999998 799999999999999999987 342111 12346777764
Q ss_pred cccCCCCCCCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCC-CCCcceeEEeccccchHHHHh------hhccCCCC
Q psy11395 77 IECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKL-SGSNTGVFIGASGSDYTRLLS------DYIKIPVN 149 (831)
Q Consensus 77 ~~~FD~~~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~-~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~ 149 (831)
++.||+.|| |++++++.|||+++|+++++++||+|||++++++ ++.++|||+|++.+++..... ......+.
T Consensus 82 ~~~fd~~~~-i~~~~~~~~d~~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T 4ddo_A 82 EGGFDPERS-VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLS 160 (451)
T ss_dssp TTCCCGGGT-SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCC
T ss_pred ccccchhhh-CCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccC
Confidence 448999999 9999999999999999999999999999999998 889999999998776543221 11222466
Q ss_pred cccccCcchhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC
Q psy11395 150 AHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR 229 (831)
Q Consensus 150 ~~~~~g~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~ 229 (831)
++..++...++++++|++.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..+...++++.
T Consensus 161 ~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~ 240 (451)
T 4ddo_A 161 PFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALST 240 (451)
T ss_dssp TTHHHHHCTTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC
T ss_pred cchhhccccchHHHHHHHHhcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhcc
Confidence 77778888899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C------CCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy11395 230 D------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303 (831)
Q Consensus 230 ~------g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~ 303 (831)
. +.|+|||.+++|+++|||++++||+++++|+++|++|+++|+|++.++|+.+.....|+..++.++|+++|++
T Consensus 241 ~~~~~~~~~~~pfd~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~ 320 (451)
T 4ddo_A 241 GFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRM 320 (451)
T ss_dssp SCTTSGGGSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHH
T ss_pred CCCcCccccccccccCCCCcEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 5 7999999999999999999999999999999999999999999999999987666667788999999999999
Q ss_pred cCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 304 Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
|||+|+||||||+|||||+++|++|..+|.++|+.. .+++|+++|+++||++||||+++++|++++|++
T Consensus 321 Agl~~~dId~ve~Hgtgt~~~d~~E~~al~~~~~~~-----------~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~ 389 (451)
T 4ddo_A 321 GDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVG-----------AGPAISSTKSATGHLLGAAGAIEAAFSILALRD 389 (451)
T ss_dssp HTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHCSS-----------SSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHH
T ss_pred cCCCHHHcCEEEecCCcCcccCHHHHHHHHHHhCCC-----------CCCcccCchhhhccCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999741 468899999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCC-CCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccccc
Q psy11395 384 KKLPASLNFYNLNKNI-KLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIE 449 (831)
Q Consensus 384 ~~ipp~~~~~~~n~~i-~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~ 449 (831)
++|||++|+++|||.+ +++ ++..+.++| ++|++++|||||||+|+|+||++++..
T Consensus 390 ~~ipp~~~~~~~~~~~~~~~----~~~~~~~~~-------~~~~a~~~sfgfgG~na~~vl~~~~~~ 445 (451)
T 4ddo_A 390 GVLPGTLNLEHPDPAADGLD----LIGPAARHV-------PVEIALSNGFGFGGVNASVLFRRYPSD 445 (451)
T ss_dssp TEECCCTTCSSBCGGGTTSE----ECCSSCEEC-------CCSEEEEEEEETTTEEEEEEEEESCC-
T ss_pred CCcCCCCCCCCCCccccccc----ccCCCCCCC-------CcCEEEEeeEcCCCceEEEEEeeCCCC
Confidence 9999999999999998 554 344444443 468999999999999999999998754
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=649.08 Aligned_cols=395 Identities=24% Similarity=0.332 Sum_probs=350.8
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|+| .++++||++|++|+++++++| ||+... .....++++++++ |+.+| |+++++
T Consensus 28 ~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~------~~~~~~~~~~v~~----d~~~~-~~~~~~ 93 (434)
T 2gp6_A 28 PYVVVTGIAMTTALA-TDAETTWKLLLDRQSGIRTLD--DPFVEE------FDLPVRIGGHLLE----EFDHQ-LTRIEL 93 (434)
T ss_dssp CCEEEEEEEEECSSC-SSHHHHHHHHHTTCCCEEECC--CHHHHH------HCCSCCEEECCSC----CSTTS-SCHHHH
T ss_pred CCEEEEeeEEeCCCC-CCHHHHHHHHHcCCCeeeeCC--cccccc------ccCccceeEEcCC----chhhh-CCHHHH
Confidence 579999999999998 799999999999999999997 453110 1122457888875 77777 999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++|+++++++||+|||+ +++++.++|||+|++.++|..+... .....+.++.+++...++++++|+
T Consensus 94 ~~~d~~~~l~l~aa~~ALedAG~--~~~~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is 171 (434)
T 2gp6_A 94 RRMGYLQRMSTVLSRRLWENAGS--PEVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVG 171 (434)
T ss_dssp HTCCHHHHHHHHHHHHHHHHTTC--CCCCTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCC--CccCCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHh
Confidence 99999999999999999999999 5677889999999998887543221 112245677777888899999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcC-CCC-----CCCCCccccCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAG-MLS-----RDGICKTFDKNA 240 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g-~ls-----~~g~~~~Fd~~a 240 (831)
+.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..|...+ +++ +++.|+|||.++
T Consensus 172 ~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~ 251 (434)
T 2gp6_A 172 LERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDR 251 (434)
T ss_dssp HHSCCCSCEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTC
T ss_pred hhhcCCCCeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccC
Confidence 99999999999999999999999999999999999999999999999998888999999 888 688999999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+|+++|||++++||+++++|+++|++||++|+|+++++||.+.....|+..++.++|+++|+++|++++||||||+||||
T Consensus 252 ~g~v~gdGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtg 331 (434)
T 2gp6_A 252 DGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATG 331 (434)
T ss_dssp CCCCBBCCEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTEEEEECCCCS
T ss_pred CCcceecceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEEEeCCc
Confidence 99999999999999999999999999999999999999998743333477899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
|+++|++|.++|.++|+. .++++++.|+++||++||+|+++++|++++|+++.+||++||++|||.|+
T Consensus 332 t~~~D~~E~~al~~~fg~------------~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~ 399 (434)
T 2gp6_A 332 TQVGDLAEGRAINNALGG------------NRPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEID 399 (434)
T ss_dssp CHHHHHHHHHHHHHHHTT------------CCCEECCTHHHHCBCTTTHHHHHHHHHHHHHHHSCCCCCSSCSSBCTTCC
T ss_pred CccchHHHHHHHHHHhcc------------CCCCcccchhhhcCchhhhHHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Confidence 999999999999999963 25789999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 401 ~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
++ +++++.++| .+|++++|||||||+|+|+||++|
T Consensus 400 ~~----~v~~~~~~~-------~~~~a~~~sfGfGG~na~~vl~~~ 434 (434)
T 2gp6_A 400 LD----VVAGEPRPG-------NYRYAINNSFGFGGHNVAIAFGRY 434 (434)
T ss_dssp CE----ECCSSCCCS-------CCCEEEEEEEETTTEEEEEEEECC
T ss_pred cc----ccCCCccCC-------CCCEEEEeCCcCCCeeEEEEEEeC
Confidence 75 455565555 468999999999999999999975
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-74 Score=656.42 Aligned_cols=409 Identities=21% Similarity=0.315 Sum_probs=355.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCc-cccccc-----ccCCCCccccccc---CcccCCCC
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWP-LEIDIK-----NKHKGINFGAFLK---DIECFDAP 83 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~-~~~~~~-----~~~~~~~~~~~l~---~~~~FD~~ 83 (831)
++||||||||++|+| .++++||++|++|+++++++|. |.+. ..++.. ......+++++++ +++.||+.
T Consensus 1 ~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~ 77 (431)
T 2ix4_A 1 RRVVVTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTL--DDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEA 77 (431)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCG--GGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHH
T ss_pred CcEEEEeeeEECCCC-CCHHHHHHHHHcCCCeeeeCCh--hhhhccccccccccccccCcccceeEEeccccccccCChh
Confidence 479999999999998 8999999999999999999974 4321 111111 1123346788998 67889999
Q ss_pred CCCCChhhhccCCHHHHHHHHHHHHHHHHcCC-CCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCc
Q psy11395 84 FFKISPIEAESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGN 156 (831)
Q Consensus 84 ~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~-~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~ 156 (831)
|| |+++ .|||+++|+++++++||+|||+ +++++++.++|||+|++.+++...... .....+.++.+++.
T Consensus 78 ~~-~~~~---~~d~~~~l~l~aa~~AL~dAG~~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 153 (431)
T 2ix4_A 78 LW-LNSK---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKI 153 (431)
T ss_dssp HH-SCST---TCCHHHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHH
T ss_pred hc-CChh---hCCHHHHHHHHHHHHHHHHcCCCCccccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcc
Confidence 87 7876 8999999999999999999999 888888889999999988775433221 11124566677777
Q ss_pred chhHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC------C
Q psy11395 157 SMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------D 230 (831)
Q Consensus 157 ~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~------~ 230 (831)
..++++++|++.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|..++++++ +
T Consensus 154 ~~~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~ 233 (431)
T 2ix4_A 154 LVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQ 233 (431)
T ss_dssp CTTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGG
T ss_pred hhHHHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCcc
Confidence 8889999999999999999999999999999999999999999999999999999999988888999999985 6
Q ss_pred CCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Q psy11395 231 GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 231 g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~d 310 (831)
+.|+|||.+++|+++|||++++||+++++|+++|++||++|+|+++++||.+.....++..++.++|+++|+++|++++|
T Consensus 234 ~~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~d 313 (431)
T 2ix4_A 234 EASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQ 313 (431)
T ss_dssp GSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGG
T ss_pred cccccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHH
Confidence 79999999999999999999999999999999999999999999999999863333337789999999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASL 390 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~ 390 (831)
|||||+|||||+++|++|..+|.++|+.... ..+++|+++|+++||++||||+++++|++++|++++|||++
T Consensus 314 Id~ve~HgtgT~~~D~~E~~al~~~~~~~~~--------~~~~~v~s~k~~~GH~~gAsG~~~li~~~l~l~~~~ipp~~ 385 (431)
T 2ix4_A 314 IDYVNAHATSTPIGDAVEARAIKTVFSEHAT--------SGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTL 385 (431)
T ss_dssp CCEEECCCCSCHHHHHHHHHHHHHHHTHHHH--------TSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCT
T ss_pred cCEEEEeCCcCcccCHHHHHHHHHHHccccc--------CCCceeecchhhhcccHHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 9999999999999999999999999975321 14688999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 391 ~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
|+++|||.++++ +++.+.++|. .+|++++|||||||+|+|+||++|
T Consensus 386 ~~~~~~p~~~~~----~v~~~~~~~~------~~~~a~~~sfGfGG~na~~il~~~ 431 (431)
T 2ix4_A 386 NVKNPDPIFDKR----FMPLTTSKKM------LVRTAMSNSFGFGGTNASLLFASI 431 (431)
T ss_dssp TCSSBCTTCCSS----SCCCSSCEEC------CCSEEEEEEEETTTEEEEEEEECC
T ss_pred CCCCCCCCCCcc----cCCccccccC------CCCEEEEecccCCCeeEEEEEeeC
Confidence 999999999876 4556666663 468999999999999999999874
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-73 Score=646.76 Aligned_cols=393 Identities=21% Similarity=0.291 Sum_probs=347.8
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
.++||||||||++|+| .++++||++|.+|+++++++| ||+... .....++++++++ |+.|| |++++
T Consensus 11 ~~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~--~~~~~~------~~~~~~~~~~~~~----d~~~~-~~~~~ 76 (416)
T 2wge_A 11 FPSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALE--DEFVTK------WDLAVKIGGHLKD----PVDSH-MGRLD 76 (416)
T ss_dssp SCCEEEEEEEEEESSC-SSHHHHHHHHHTTCCCCEECC--CHHHHH------HTCSCCEEBCCSS----CGGGG-CCHHH
T ss_pred CCcEEEEeeEEECCCC-CCHHHHHHHHHcCCCEEEeCC--cccccc------ccCCccEEEEeCC----chhhh-CCHHH
Confidence 3579999999999998 899999999999999999997 443110 1123457888876 78888 99999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHH
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
++.|||+++|+++++++||+|||+ ++++..++|||+|++.++|..... ......+.++.+++...++++++|
T Consensus 77 ~~~~d~~~~l~l~aa~~AL~dAG~--~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~i 154 (416)
T 2wge_A 77 MRRMSYVQRMGKLLGGQLWESAGS--PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVI 154 (416)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHTTC--CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC--CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHH
Confidence 999999999999999999999999 677888999999999877643221 112224667777788889999999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----CCCCCccccCCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----RDGICKTFDKNA 240 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----~~g~~~~Fd~~a 240 (831)
++.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..|...++++ +++.|+|||.++
T Consensus 155 a~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~ 234 (416)
T 2wge_A 155 GLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDR 234 (416)
T ss_dssp HHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTC
T ss_pred HHHhccCCCcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCC
Confidence 999999999999999999999999999999999999999999999998888888999999998 678999999999
Q ss_pred CcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCC--CHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p--~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
+|+++|||++++||+++++|+++|++||++|+|+++++||.+ ++.| +..++.++|+++|+++|++++||||||+||
T Consensus 235 dg~v~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~--~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hg 312 (416)
T 2wge_A 235 DGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFH--MVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHG 312 (416)
T ss_dssp CCBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSC--SSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCC
T ss_pred CCccccCceEEEEECcHHHHHHCCCceEEEEEEEEEecCCCC--ccCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEECC
Confidence 999999999999999999999999999999999999999986 4555 778999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~ 398 (831)
|||++||++|..++..+ +. .++++++.|+++||++||||+++++|++++|++++|||++||++|||.
T Consensus 313 tgT~~gD~~E~~al~~~-~~------------~~~~v~s~k~~~GH~~gAsG~~~~i~~~l~l~~~~ipp~~~~~~~~p~ 379 (416)
T 2wge_A 313 TATPIGDAAEANAIRVA-GC------------DQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE 379 (416)
T ss_dssp CCCHHHHHHHHHHHHHT-TC------------TTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTT
T ss_pred CCCcCCCHHHHHHHHHh-cc------------CCCCccCCcccccCcHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Confidence 99999999999999887 42 247899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 399 i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
|+++ +++++.++ ..+|+++||||||||+|+|+||++|
T Consensus 380 ~~~~----~v~~~~~~-------~~~~~a~~~sfGfGG~na~~vl~~~ 416 (416)
T 2wge_A 380 IDLD----VVAGEPRY-------GDYRYAVNNSFGFGGHNVALAFGRY 416 (416)
T ss_dssp TCCE----ECCSSCEE-------CCCCEEEEEEEETTTEEEEEEEECC
T ss_pred CCcc----cCCCCCcc-------CCCCEEEEeCcccCceeEEEEEEeC
Confidence 9875 44444433 2578999999999999999999975
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-67 Score=663.01 Aligned_cols=389 Identities=17% Similarity=0.220 Sum_probs=341.0
Q ss_pred CCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q psy11395 29 NTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWK 108 (831)
Q Consensus 29 ~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~mdp~~rl~l~aa~~ 108 (831)
.+.++||++|.+|++++.+.+. +| ...++|++. +.||+.||||++++++.|||+++|+++++++
T Consensus 1158 ~~~~~~w~~L~~G~~~i~p~~~-~~-------------~~~~aG~i~--~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~e 1221 (1887)
T 2uv8_A 1158 PETGEYSVKLLKGATLYIPKAL-RF-------------DRLVAGQIP--TGWNAKTYGISDDIISQVDPITLFVLVSVVE 1221 (1887)
T ss_dssp TTTSCEEEEECTTCEEEEEEEE-CC-------------SCCEEECCC--TTCCTTTTTCCHHHHHHSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCceeecccC-CC-------------CccEEEEEC--CCCChhhcCCCHHHHHhcCHHHHHHHHHHHH
Confidence 4578999999999999987532 22 235788886 3699999999999999999999999999999
Q ss_pred HHHHcCCC-CCC----CCCCcceeEEeccccchHHHHhhhc----cCCCCcccccCcchhHHHHHHHH-HcCCCCCcccc
Q psy11395 109 TIEDAGYD-SSK----LSGSNTGVFIGASGSDYTRLLSDYI----KIPVNAHHCIGNSMAVLANRISY-FYNFTGPSLLI 178 (831)
Q Consensus 109 ALedAG~~-~~~----~~~~~~gV~~G~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~a~ris~-~lgl~Gps~tv 178 (831)
||+||||+ +.+ +++.++|||+|++.+++..+...+. ...+.++..+++..+.++++|++ +||++||+++|
T Consensus 1222 AL~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~is~~~lgl~GP~~tv 1301 (1887)
T 2uv8_A 1222 AFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTP 1301 (1887)
T ss_dssp HHHHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTTCCCCTTHHHHHSTTHHHHHHHHHTTCCCSCCCCC
T ss_pred HHHHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhcCCCCcchhhcchhhHHHHHHHHHHcCCccceEEe
Confidence 99999994 666 7899999999999888765433322 12356666777888999999999 59999999999
Q ss_pred ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----------CCCCCccccCCCCcceecC
Q psy11395 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----------RDGICKTFDKNADGYVRGE 247 (831)
Q Consensus 179 ~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----------~~g~~~~Fd~~a~G~v~gE 247 (831)
+++|+||++||+.||++|++|+||+|||||+|. +++..+..|..+++++ +++.|||||.+++||++||
T Consensus 1302 ~tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r~Gfv~gE 1380 (1887)
T 2uv8_A 1302 VGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQ 1380 (1887)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTCCSBCBBC
T ss_pred ecccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccCCCccccc
Confidence 999999999999999999999999999999998 5788889999999999 6799999999999999999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCC------------------HH------------------
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN------------------PI------------------ 291 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~------------------~~------------------ 291 (831)
|+|++||+++++|+++|++||++|+|+++++||.+.++++|+ +.
T Consensus 1381 Gag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~lt~ar~~~G~gt~ps~~ld~~~r~~ql~~~~~~i~ 1460 (1887)
T 2uv8_A 1381 GAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK 1460 (1887)
T ss_dssp EEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCCSGGGGGGCCCCSCCSSCCGGGCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCCccccccccccccccCCCCcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876666553 21
Q ss_pred -------------------------HH-------------------------------HHHHHHHHHHcCCCCCCcceEE
Q psy11395 292 -------------------------QQ-------------------------------SYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 292 -------------------------~~-------------------------------~~~i~~al~~Agl~~~dId~ie 315 (831)
+| ..+|++||+++||+++||||||
T Consensus 1461 ~~~~~~~~~l~~~~~~~g~~~~~~~~Qe~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~air~ALa~AGl~p~DId~ve 1540 (1887)
T 2uv8_A 1461 DWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1540 (1887)
T ss_dssp HHHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTCSSSCHHHHHHHTTTCCGGGEEEEE
T ss_pred HHhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhchHHHHHHHHHHHHcCCCHHHceEEE
Confidence 33 3799999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 316 CHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 316 ~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
+|||||++||++|.++|.++|+...... ..+|+|+++|+++||++||||++++++++++|++|+|||++|+++|
T Consensus 1541 aHGTgT~~gD~~E~~Al~~~f~~~gr~~------~~pl~v~s~KsliGH~~gAAGa~~li~~ll~L~~g~iPpt~n~d~~ 1614 (1887)
T 2uv8_A 1541 FHGTSTKANDKNESATINEMMKHLGRSE------GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1614 (1887)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHTCCT------TCCEEEECTHHHHCBCGGGHHHHHHHHHHHHHTTCEECCCTTCSSB
T ss_pred ecCCCCcccCHHHHHHHHHHHhhhccCC------CCcEEEEecccceechHHHHhHHHHHHHHHHHHhCCcCCcCCCCCC
Confidence 9999999999999999999997533221 2569999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 396 NKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 396 n~~i~-~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
||.|+ ++ .+.++++.++| .++|+++||||||||+|+|+||++++.
T Consensus 1615 dp~l~~~~--~l~~~~~~~~~------~~~r~a~v~SFGFGG~NahvIle~p~~ 1660 (1887)
T 2uv8_A 1615 DKILEQFE--YVLYPSKTLKT------DGVRAVSITSFGFGQKGGQAIVVHPDY 1660 (1887)
T ss_dssp CGGGGGCT--TEECCSSCEEC------SCCCEEEEEEEETTTEEEEEEEECTHH
T ss_pred CCcccccc--ccccccccccC------CCCCEEEEccCCCCCccEEEEEecCCc
Confidence 99995 44 45667888788 257899999999999999999998753
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=650.13 Aligned_cols=389 Identities=17% Similarity=0.216 Sum_probs=336.9
Q ss_pred CCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q psy11395 29 NTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWK 108 (831)
Q Consensus 29 ~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~mdp~~rl~l~aa~~ 108 (831)
.+.++||++|.+|++++.+.+. ++ ...++|++. +.||+.||||++++++.|||+++|+++++++
T Consensus 959 ~~~eefW~~L~~G~~~i~p~~~-~~-------------~~~vaG~Ip--~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~E 1022 (1688)
T 2pff_A 959 PETGEYSVKLLKGATLYIPKAL-RF-------------DRLVAGQIP--TGWNAKTYGISDDIISQVDPITLFVLVSVVE 1022 (1688)
T ss_dssp CCCCSSSCCCCCCTTCCCCCCC-CE-------------ECCSSCSCC--CCCCCCCSSCCTTTBTTBCSSTTHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEecCCC-CC-------------CceEEEEEC--CCCChhhCCCCHHHHhccCHHHHHHHHHHHH
Confidence 4578999999999999987321 11 135788886 3699999999999999999999999999999
Q ss_pred HHHHcCCC-CCC----CCCCcceeEEeccccchHHHHhhhc----cCCCCcccccCcchhHHHHHHHH-HcCCCCCcccc
Q psy11395 109 TIEDAGYD-SSK----LSGSNTGVFIGASGSDYTRLLSDYI----KIPVNAHHCIGNSMAVLANRISY-FYNFTGPSLLI 178 (831)
Q Consensus 109 ALedAG~~-~~~----~~~~~~gV~~G~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~a~ris~-~lgl~Gps~tv 178 (831)
||+||||+ +.+ ++.+++|||+|++.+++..+...+. ...+.++..++...+.++++|++ .||++||+++|
T Consensus 1023 ALedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TV 1102 (1688)
T 2pff_A 1023 AFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTP 1102 (1688)
T ss_dssp HHTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCC
T ss_pred HHHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhcCCCCcchhccccHHHHHHHHHHHHcCCcCCeEEe
Confidence 99999997 666 7889999999999887643322211 22456666777888999999999 89999999999
Q ss_pred ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----------CCCCCccccCCCCcceecC
Q psy11395 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----------RDGICKTFDKNADGYVRGE 247 (831)
Q Consensus 179 ~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----------~~g~~~~Fd~~a~G~v~gE 247 (831)
++|||||++||+.||++|++|+||+|||||+|. +++..+..|..+++++ +++.|||||.+++||++||
T Consensus 1103 dtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~-msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GE 1181 (1688)
T 2pff_A 1103 VGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQ 1181 (1688)
T ss_dssp CCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCC-CCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCS
T ss_pred cCCCchHHHHHHHHHHHHHCCCCCEEEEeeecc-CCHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCCCCcccc
Confidence 999999999999999999999999999999998 4777778899999998 6689999999999999999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCC------------------HH------------------
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN------------------PI------------------ 291 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~------------------~~------------------ 291 (831)
|||++||+++++|+++|++||++|+|+++++||.+.++++|. +.
T Consensus 1182 GAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rql~~~~~~i~ 1261 (1688)
T 2pff_A 1182 GAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK 1261 (1688)
T ss_dssp CCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHHHSHHHHHHH
T ss_pred ceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCCCCCccchhhhcccccCCCCcccChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998866555442 11
Q ss_pred -------------------------HH-------------------------------HHHHHHHHHHcCCCCCCcceEE
Q psy11395 292 -------------------------QQ-------------------------------SYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 292 -------------------------~~-------------------------------~~~i~~al~~Agl~~~dId~ie 315 (831)
+| .++|++||+++||+++||||||
T Consensus 1262 ~~~~~e~~~l~~e~~~~g~~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGLtpdDIdyVE 1341 (1688)
T 2pff_A 1262 DWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1341 (1688)
T ss_dssp HHHHHHHHHHHHHSSSSCSSHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCSSTTCCCCCC
T ss_pred HHHHhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccCCceecchHHHHHHHHHHHHcCCCHHHeeEEE
Confidence 33 4789999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 316 CHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 316 ~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
+|||||++||++|.++|.++|+...... ..+++++|+|+++||++||||++++++++++|++|+|||++|+++|
T Consensus 1342 aHGTGT~lgD~iE~~AL~~af~~~gr~~------g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~d~p 1415 (1688)
T 2pff_A 1342 FHGTSTKANDKNESATINEMMKHLGRSE------GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1415 (1688)
T ss_dssp CCCCSCSSSSTTTTTTTGGGTGGGCCCT------TCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCCSCC
T ss_pred EeCCCCccccHHHHHHHHHHHhhhCcCC------CCeEEEEeChhhhcchHHHhhHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999999999999999998533211 2569999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 396 NKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 396 n~~i~-~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
||.++ ++ .+.++++.++|. ++|+++||||||||+|+|+||++++.
T Consensus 1416 dp~l~~~d--~v~~p~~~~~~~------~~r~AlVnSFGFGGtNAhvILe~p~~ 1461 (1688)
T 2pff_A 1416 DKILEQFE--YVLYPSKTLKTD------GVRAVSITSFGFGQKGGQAIVVHPDY 1461 (1688)
T ss_dssp CTTCCSSC--CCCSCTTCCSSS------SSSCCCCCCCCSTTCCCCCCEECSSS
T ss_pred CCCCCcCC--ceeecCccccCC------CCcEEEEeeECCCCeeEEEEEeCCCc
Confidence 99996 43 455577877883 56899999999999999999998753
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-67 Score=657.28 Aligned_cols=389 Identities=18% Similarity=0.228 Sum_probs=340.7
Q ss_pred CCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q psy11395 29 NTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWK 108 (831)
Q Consensus 29 ~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~mdp~~rl~l~aa~~ 108 (831)
.+.++||++|.+|++++.+.+ .++ ...++|++. +.||+.||||++++++.|||+++++++++++
T Consensus 1133 ~~~~~~w~~L~~G~~~i~p~~-~~~-------------~~~~aG~i~--~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~e 1196 (1878)
T 2uv9_A 1133 PETGQYTVRLRKGATLLIPKA-LQF-------------DRLVAGQIP--TGWDARRYGVPEDIIQQVDPVTLYVLVSVAE 1196 (1878)
T ss_dssp TTTSCEEEEECTTCEEEEEEE-ECC-------------SCCEEEECC--TTCCHHHHTCCHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCeeeecC-CCC-------------cceEEEEeC--CCCCHhhcCCCHHHHHhcCHHHHHHHHHHHH
Confidence 466899999999999998732 111 235788886 3699999999999999999999999999999
Q ss_pred HHHHcCCC-CCC----CCCCcceeEEeccccchHHHHhhhc----cCCCCcccccCcchhHHHHHHHH-HcCCCCCcccc
Q psy11395 109 TIEDAGYD-SSK----LSGSNTGVFIGASGSDYTRLLSDYI----KIPVNAHHCIGNSMAVLANRISY-FYNFTGPSLLI 178 (831)
Q Consensus 109 ALedAG~~-~~~----~~~~~~gV~~G~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~a~ris~-~lgl~Gps~tv 178 (831)
||+||||+ +.+ ++.+++|||+|++.+++..+...+. ...+.++..++++.++++++|++ +||++||+++|
T Consensus 1197 AL~~AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~~~lg~~GP~~tv 1276 (1878)
T 2uv9_A 1197 ALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTP 1276 (1878)
T ss_dssp HHHTTTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHHHTCCCCCCBCCB
T ss_pred HHHHCCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhcCCCCchhhhcchHHHHHHHHHHHhcCCCCCeEEE
Confidence 99999998 666 7899999999999988765433322 22467778888999999999999 59999999999
Q ss_pred ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----------CCCCCccccCCCCcceecC
Q psy11395 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----------RDGICKTFDKNADGYVRGE 247 (831)
Q Consensus 179 ~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----------~~g~~~~Fd~~a~G~v~gE 247 (831)
+++|+||++||+.||+.|++|+||+|||||+|. +++..+..|..++.++ +++.|||||.+++||++||
T Consensus 1277 ~tACASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~Gfv~gE 1355 (1878)
T 2uv9_A 1277 VGACATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQ 1355 (1878)
T ss_dssp CCGGGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCCCBCBBC
T ss_pred cCcchHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCCCCCcccc
Confidence 999999999999999999999999999999999 6788889999999998 6799999999999999999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCC----------------H---------------------
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN----------------P--------------------- 290 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~----------------~--------------------- 290 (831)
|+|++||+++++|+++|++||++|+|+++++||.+.++++|. +
T Consensus 1356 Gag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~~~~~~~i~~~ 1435 (1878)
T 2uv9_A 1356 GCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQW 1435 (1878)
T ss_dssp EEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCCCcchhhhhhhccccCCCcccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887777662 1
Q ss_pred ------------------------------HHHH-------------------------------HHHHHHHHHcCCCCC
Q psy11395 291 ------------------------------IQQS-------------------------------YLLQKAWNESNIDVR 309 (831)
Q Consensus 291 ------------------------------~~~~-------------------------------~~i~~al~~Agl~~~ 309 (831)
.+|+ .+|++||+.+||+++
T Consensus 1436 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ALa~aGl~~~ 1515 (1878)
T 2uv9_A 1436 KESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALATWGLTID 1515 (1878)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHHHHHTTTCCGG
T ss_pred hhhhhhhhhHHHHhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHcCCCHH
Confidence 1343 799999999999999
Q ss_pred CcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 310 SLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 310 dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
||+|||+|||||++||++|.++|.++|+...... ..+|+++++|+++||++||||+++++|++++|++|+|||+
T Consensus 1516 DId~veaHGTgT~~gD~~E~~al~~~f~~~~r~~------~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~iPp~ 1589 (1878)
T 2uv9_A 1516 DLGVASFHGTSTVANDKNESDVICQQLKHLGRTK------GNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGN 1589 (1878)
T ss_dssp GEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCT------TCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCEECCC
T ss_pred HeeEEEEcCCCCcccCHHHHHHHHHHHhhcCCCC------CCceeEEecccccCChHhHhhHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999998633221 2569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 390 LNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 390 ~~~~~~n~~i~-~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
+|+++|||.|+ ++. +.++.+..+| .++|+++||||||||+|+|+||++++.
T Consensus 1590 ~n~d~~dp~i~~~~~--v~~~~~~~~~------~~~r~a~v~SFGFGG~NahvIle~p~~ 1641 (1878)
T 2uv9_A 1590 RNADNVDKVMEQFDY--IVYPSRSIKT------DGIKAFSVTSFGFGQKGAQAIGVHPKY 1641 (1878)
T ss_dssp TTCCSBCGGGGGCTT--EECCSSCEEC------SCCCEEEEEEEETTTEEEEEEEECTHH
T ss_pred CCCCCCCCccccccc--cccccccccC------CCCCEEEEccCCCCCeeEEEEEecCCc
Confidence 99999999995 542 3445555544 257899999999999999999998753
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=676.67 Aligned_cols=441 Identities=16% Similarity=0.194 Sum_probs=375.3
Q ss_pred CCCHHHHHHHHhcCCCc--eeeCCc-ccCCCccccc-----ccccCCCCcccccccCcccCCCCCCCCChhhhccCCHHH
Q psy11395 28 INTLSKFWKILKKGSSV--IEELNE-SRWIWPLEID-----IKNKHKGINFGAFLKDIECFDAPFFKISPIEAESMDPQQ 99 (831)
Q Consensus 28 ~~~~~~fw~~L~~g~~~--~~~~p~-~r~~~~~~~~-----~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~mdp~~ 99 (831)
..+.++.|+...++.+. +.+.|. ++|+...... +.......+++|+++ +.||+.||||++++++.|||++
T Consensus 2571 ~~s~~~a~~~~~~~~~~~~i~~~~~~~~W~~~~~~~~~i~~p~~~~~~~~~gG~i~--d~FD~~~fgIs~rea~~mDp~~ 2648 (3089)
T 3zen_D 2571 VSSEADARAFVQFDPEHTVARPLPDSSDWEVTRKAGTEIRVPRKTKLSRTVGAQIP--TGFDPTVWGISPDMASSIDRVA 2648 (3089)
T ss_dssp EECHHHHHHHHTTSTTSEEEEECTTTCCEEEEECTTCEEEEEEEECCSCCEEECCC--TTCCTTTTTCCHHHHHHSCHHH
T ss_pred cCCHHHHHHHHHhCCCcceEEeCCCCcceeeeecCCCCcCCCCcCCccceEEEEcC--CCCChhhcCCCHHHHHhcCHHH
Confidence 35788899888775443 566665 7886543332 111223456899996 4699999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCcceeEEeccccchHHHHhhhc----cCCCCcccccCcchhHHHHHHHH-HcC
Q psy11395 100 RILLELSWKTIEDAGYDSSKL----SGSNTGVFIGASGSDYTRLLSDYI----KIPVNAHHCIGNSMAVLANRISY-FYN 170 (831)
Q Consensus 100 rl~l~aa~~ALedAG~~~~~~----~~~~~gV~~G~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~a~ris~-~lg 170 (831)
||+++++++||+||||+++++ ++.++|||+|++.+++......+. .........++.+.+++++++++ +||
T Consensus 2649 rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~is~~~lG 2728 (3089)
T 3zen_D 2649 LWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVG 2728 (3089)
T ss_dssp HHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTTHHHHTSTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccchhhccccccHHHHHHHHHHcC
Confidence 999999999999999998876 678999999998876643322111 11122234556777899999996 569
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCC-----------CCCCCccccCC
Q psy11395 171 FTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-----------RDGICKTFDKN 239 (831)
Q Consensus 171 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls-----------~~g~~~~Fd~~ 239 (831)
++||+++|+++||||++||++||++|++|+||+|||||+|. +++..+..|..+++++ +++.|+|||.+
T Consensus 2729 l~GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~ 2807 (3089)
T 3zen_D 2729 GYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRR 2807 (3089)
T ss_dssp CCSCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTT
T ss_pred CCCCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccccCccccC
Confidence 99999999999999999999999999999999999999999 7888888999999876 58999999999
Q ss_pred CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCH-------HHHHHHHHHHHHHcCCCCCCcc
Q psy11395 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP-------IQQSYLLQKAWNESNIDVRSLG 312 (831)
Q Consensus 240 a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~-------~~~~~~i~~al~~Agl~~~dId 312 (831)
++||++|||+|++|||++++|+++|++||++|+|+++++||.+.+++.|+. .+|.++|++||+++||+|+|||
T Consensus 2808 ~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~~AGl~p~DId 2887 (3089)
T 3zen_D 2808 RLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLAQLGVGADDIA 2887 (3089)
T ss_dssp CCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHHTTTCCGGGEE
T ss_pred CCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHHHcCCCHHHee
Confidence 999999999999999999999999999999999999999999999999973 4788899999999999999999
Q ss_pred eEEecCCCCCCCCHHHHH---HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 313 YIECHGTGTKLGDPIEIQ---GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 313 ~ie~HgtGT~~gD~~E~~---al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
|||+|||||++||++|.. ++.++|+... ..+|+|+|+|+||||++||||+++++|++++|+|++|||+
T Consensus 2888 yVEaHGTGT~lgD~~E~~al~al~~~fg~~~---------~~~~~v~s~Ks~iGH~~gAAG~~~lik~ll~L~~g~iPpt 2958 (3089)
T 3zen_D 2888 VISKHDTSTLANDPNETELHERIADSMGRAP---------GNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPN 2958 (3089)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHHHTTCCT---------TCCEEEECSHHHHCBCSTTHHHHHHHHHHHHHHHCCBCCC
T ss_pred EEEEecCCcccccHHHHHHHHHHHHHhCccC---------CCcceecccccccCCchhhhhHHHHHHHHHHHhcCccCCC
Confidence 999999999999999999 6777886421 1469999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCe
Q psy11395 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPL 469 (831)
Q Consensus 390 ~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (831)
+|+++|||.|+ ..++|+++++.++|+.. ..+|+++||||||||+|+|+||++++..... ...+.
T Consensus 2959 ~~~~~~np~i~-~~~~~~~~~~~~~w~~~---~~~r~a~vnSfGfGG~NahvVle~~~~~~~~------------~~~~~ 3022 (3089)
T 3zen_D 2959 RSLDCVDDELA-TSGHFVWVREPLDLRGK---FPLKAGLVTSLGFGHVSGLVALVHPEAFIAA------------LDPSE 3022 (3089)
T ss_dssp TTCSSBCGGGG-GCSSEEECSSCBCCCTT---SCCCEEEEEEEETTTEEEEEEEECGGGTGGG------------SHHHH
T ss_pred CCCCCCCCCcc-ccCCeeecCCCccCCCC---CCCCEEEEccccCCCCeEEEEEecCchhhhc------------cChHH
Confidence 99999999999 88999999999999642 4689999999999999999999998643211 01145
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhccc
Q psy11395 470 IFVLSAKTKSQLLIYVKKYIEWLNNKE 496 (831)
Q Consensus 470 l~~lSa~~~~~l~~~~~~~~~~l~~~~ 496 (831)
+..+|+|+++.|+...++|.+++..+.
T Consensus 3023 ~~~~~~r~~~r~~~~~~~~~~~~~~~~ 3049 (3089)
T 3zen_D 3023 REDYRTRAEQRMLAGQRRLVSAIAGGR 3049 (3089)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 677899999999999999999987653
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=330.29 Aligned_cols=270 Identities=19% Similarity=0.211 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCC
Q psy11395 98 QQRILLELSWKTIEDA-GYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGP 174 (831)
Q Consensus 98 ~~rl~l~aa~~ALedA-G~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gp 174 (831)
.++|+++++++||+|| |+++++++ +|++|+..+++. ..+.++++|++.||| +||
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~~id----~v~~g~~~~~~~-------------------~~~~~a~~ia~~lgl~~~~p 86 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPGEVE----DVIWGCVNQTLE-------------------QGWNIARMASLMTQIPHTSA 86 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEE----EEEEECSSBSBT-------------------TTTTHHHHHHTTSSSCTTSE
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC----EEEEEeeccccC-------------------CCCcHHHHHHHHcCCCCCcc
Confidence 4789999999999999 99988876 799998765441 014589999999999 899
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cchh------------------HHH------HHcCC---
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSNT------------------IAY------YKAGM--- 226 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~~------------------~~~------~~~g~--- 226 (831)
+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |... +.. .+.|+
T Consensus 87 ~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~g~s~e 166 (390)
T 1wdk_C 87 AQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISRE 166 (390)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHHHHHTCCHH
T ss_pred EEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999998643 3210 111 01111
Q ss_pred ---------------------CC----C------CCCCccccCC---------------------CCcce-------ecC
Q psy11395 227 ---------------------LS----R------DGICKTFDKN---------------------ADGYV-------RGE 247 (831)
Q Consensus 227 ---------------------ls----~------~g~~~~Fd~~---------------------a~G~v-------~gE 247 (831)
+. | .+.|++||.+ ++|++ ++|
T Consensus 167 ~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~~~~~~~~d 246 (390)
T 1wdk_C 167 QQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITD 246 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCGGGBCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEechhcCcccc
Confidence 11 1 1223799998 79999 999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHH
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPI 327 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~ 327 (831)
|++++||+++++|+++|++|+++|+|++.++++. .+...++..+++++|+++|++|+||||||+|+++|.
T Consensus 247 GAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~p-----~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~f~~----- 316 (390)
T 1wdk_C 247 GASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDP-----AIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAA----- 316 (390)
T ss_dssp EEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCG-----GGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSBHH-----
T ss_pred hhheeEEecHHHHHHcCCCccEEEEEEEEeccCh-----hhcchhHHHHHHHHHHHcCCChhhCcEEEeccCCHH-----
Confidence 9999999999999999999999999999987542 233457789999999999999999999999999873
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCce
Q psy11395 328 EIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLY 407 (831)
Q Consensus 328 E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~ 407 (831)
|..++.+.|+-.... ..++++++.|.++||++||+|+.++++++++|+++
T Consensus 317 ~~~~~~~~lg~~~~~-------~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~----------------------- 366 (390)
T 1wdk_C 317 QALPVLKDLKVLDKM-------NEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN----------------------- 366 (390)
T ss_dssp HHHHHHHHTTCGGGH-------HHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHcCCCCCC-------CCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc-----------------------
Confidence 667777888632100 13578999999999999999999999999999984
Q ss_pred eecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 408 IIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 408 ~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..+++++++.+.||.+..+|||.
T Consensus 367 ---------------~~~~gl~~~~~ggG~~~a~~~~~ 389 (390)
T 1wdk_C 367 ---------------GGTFGLSTMCIGLGQGIATVFER 389 (390)
T ss_dssp ---------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred ---------------CCCEEEEEecccchheEEEEEEe
Confidence 12467888788899999999985
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.38 Aligned_cols=263 Identities=19% Similarity=0.163 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
++|+++++++||+|||+++++++ +|++|+..+++. ...++++|++.||+ +||++
T Consensus 31 ~~L~~~a~~~Al~dAGl~~~~id----~v~~g~~~~~~~--------------------~~~~a~~ia~~lgl~~~~p~~ 86 (397)
T 1wl4_A 31 QDLGSTVIKEVLKRATVAPEDVS----EVIFGHVLAAGC--------------------GQNPVRQASVGAGIPYSVPAW 86 (397)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCTTS--------------------CSCHHHHHHHHTTCCTTSCEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCCC--------------------CCHHHHHHHHHcCCCCCccEE
Confidence 68999999999999999988887 688887654431 12478999999999 89999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cchh------------------------------HHHH---
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSNT------------------------------IAYY--- 222 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~~------------------------------~~~~--- 222 (831)
+|+++|+|++.||++|+++|++|+||++||||+|.+.. |... +...
T Consensus 87 ~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~a~~ 166 (397)
T 1wl4_A 87 SCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAEN 166 (397)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCCBHHHHHHH
T ss_pred EecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccchHHHHHHH
Confidence 99999999999999999999999999999999998763 2100 1110
Q ss_pred ---------------------------HcCC------------------CCCCC------------CCcc-ccCCCCcce
Q psy11395 223 ---------------------------KAGM------------------LSRDG------------ICKT-FDKNADGYV 244 (831)
Q Consensus 223 ---------------------------~~g~------------------ls~~g------------~~~~-Fd~~a~G~v 244 (831)
..+. +++++ .|+| ||.+++|++
T Consensus 167 ~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvfd~~~~G~v 246 (397)
T 1wl4_A 167 VAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTV 246 (397)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSSCCSSCCCC
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCccCCCCCCCE
Confidence 0111 12333 5889 999999999
Q ss_pred -------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 245 -------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 245 -------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
++||++++||++++.|+++|++|+++|+|++.+++. ..+...++..+++++|+++|++++||||||.|
T Consensus 247 t~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ie~~ 321 (397)
T 1wl4_A 247 TPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVE-----PSIMGIGPIPAIKQAVTKAGWSLEDVDIFEIN 321 (397)
T ss_dssp CTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGGGCCEEEEC
T ss_pred echhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeecC-----hhhccchHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 999999999999999999999999999999998642 12335678899999999999999999999988
Q ss_pred CCCCCCCCHHHHH--HHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQ--GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 318 gtGT~~gD~~E~~--al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
|..|.. ++.+.|+-.. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 322 -------d~f~~~~l~~~~~lg~~~----------~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~----------- 373 (397)
T 1wl4_A 322 -------EAFAAVSAAIVKELGLNP----------EKVNIEGGAIALGHPLGASGCRILVTLLHTLERM----------- 373 (397)
T ss_dssp -------CSBHHHHHHHHHHHTCCG----------GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred -------cccHHHHHHHHHHcCCCC----------cCcCCCcCccccCCChhhhHHHHHHHHHHHHhhc-----------
Confidence 455553 4677776311 4688999999999999999999999999999884
Q ss_pred CCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 396 n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..+++++++.+.||.+..+|||.
T Consensus 374 ---------------------------~~~~gl~~~~~ggG~~~a~~~e~ 396 (397)
T 1wl4_A 374 ---------------------------GRSRGVAALCIGGGMGIAMCVQR 396 (397)
T ss_dssp ---------------------------TCCEEEEEEEETTTEEEEEEEEE
T ss_pred ---------------------------CCCEEEEEEecccchheEEEEEe
Confidence 12578888888899999999985
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=311.70 Aligned_cols=267 Identities=17% Similarity=0.196 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
..+|+++++++||+|||+++++++ +|++|+...++. ..+.++.+|++.||+ ++|+
T Consensus 26 ~~~L~~~Aa~~Al~dAgl~~~~id----~v~~g~~~~~~~-------------------~~~~~a~~va~~lGl~~~~p~ 82 (401)
T 1ulq_A 26 PDDLLAHALSVLVDRSGVPKEEVE----DVYAGCANQAGE-------------------DNRNVARMALLLAGFPVEVAG 82 (401)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCSST-------------------TTTTHHHHHHHHTTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecccCCC-------------------CCChHHHHHHHHhCCCCCccE
Confidence 357999999999999999998887 799998765541 014578999999999 7999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cch--------------h----------HHHH--H-----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSN--------------T----------IAYY--K----- 223 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~--------------~----------~~~~--~----- 223 (831)
++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.. + ..+. .
T Consensus 83 ~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 162 (401)
T 1ulq_A 83 CTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTES 162 (401)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHHHHSCCCC
T ss_pred eeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccccccccch
Confidence 999999999999999999999999999999999997654 320 0 0110 0
Q ss_pred -----------------------------------cCCC------------------CCCC------------CCcc-cc
Q psy11395 224 -----------------------------------AGML------------------SRDG------------ICKT-FD 237 (831)
Q Consensus 224 -----------------------------------~g~l------------------s~~g------------~~~~-Fd 237 (831)
.|.+ ++|+ .++| ||
T Consensus 163 ~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpif~ 242 (401)
T 1ulq_A 163 MGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFR 242 (401)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHHSCBSSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHhhCCCccC
Confidence 0111 2232 2456 77
Q ss_pred CCCCcce-------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Q psy11395 238 KNADGYV-------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 238 ~~a~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~d 310 (831)
. +|++ ++||+++|||+++++|+++|++++++|+|++.++++... .+.++..++++||++||++++|
T Consensus 243 ~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~~-----~~~~~~~a~~~al~~Agl~~~d 315 (401)
T 1ulq_A 243 E--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRI-----MGIGPVPATRKALERAGLSFSD 315 (401)
T ss_dssp T--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCGGG-----GGGTHHHHHHHHHHHTTCCGGG
T ss_pred C--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCCccc-----cchhHHHHHHHHHHHcCCCHHH
Confidence 5 7888 799999999999999999999999999999999875321 1346689999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASL 390 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~ 390 (831)
|||||+|+++|. .|+..+.. |+-.. ...++++.+.|..+||+.||+|+.++++++++|+++
T Consensus 316 Id~ie~heafa~----~~l~~~~~-lg~~~--------~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~------ 376 (401)
T 1ulq_A 316 LGLIELNEAFAA----QALAVLRE-WSLSM--------EDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR------ 376 (401)
T ss_dssp CSEEEECCSBHH----HHHHHHHH-HTCCT--------TCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT------
T ss_pred cCEEEEecchHH----HHHHHHHH-cCCCC--------CCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc------
Confidence 999999998883 56666643 33100 013456666677799999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 391 ~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..+++++++|++||.|+.+||+.
T Consensus 377 --------------------------------~~~~gl~~~~~ggG~~~a~v~~~ 399 (401)
T 1ulq_A 377 --------------------------------KVQFGLATMCIGVGQGIAVVVEG 399 (401)
T ss_dssp --------------------------------TCSEEEEEEEETTTEEEEEEEEE
T ss_pred --------------------------------CCCEEEEEeecCCcccEEEEEEe
Confidence 13579999999999999999986
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=314.25 Aligned_cols=263 Identities=17% Similarity=0.173 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
.++|+++++++||+|||+++++++ ++++|+..+++. ...++++|++.+||+ ||+
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~~id----~~~~g~~~~~~~--------------------~~~~a~~ia~~lgl~~~~p~ 82 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAGEVN----EVILGQVLPAGE--------------------GQNPARQAAMKAGVPQEATA 82 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCTTS--------------------CSCHHHHHHHHTTCCTTSEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCCC--------------------CcHHHHHHHHHcCCCCCceE
Confidence 467999999999999999988887 577776543321 124789999999998 999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cch--------------h----------------HHH---
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSN--------------T----------------IAY--- 221 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~--------------~----------------~~~--- 221 (831)
++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.. + +..
T Consensus 83 ~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 162 (392)
T 2vu1_A 83 WGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAE 162 (392)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTCCBHHHHHH
T ss_pred EEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhcccccccccchHHHHHH
Confidence 999999999999999999999999999999999998643 220 0 110
Q ss_pred ---HHc------------------------CCCC----------CCCCCccccCC--------------------CCcce
Q psy11395 222 ---YKA------------------------GMLS----------RDGICKTFDKN--------------------ADGYV 244 (831)
Q Consensus 222 ---~~~------------------------g~ls----------~~g~~~~Fd~~--------------------a~G~v 244 (831)
.+. |.+. +++ |+|||.+ ++|++
T Consensus 163 ~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~-~~~f~~d~~~r~~~t~e~~~~~~~v~~~~g~v 241 (392)
T 2vu1_A 163 NVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG-DITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241 (392)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTC-CEEECSCSSCCTTCCHHHHHTCCCSSCTTCCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCC-ceeeccccccCCCCCHHHHhcCCCccCCCCCe
Confidence 000 1111 112 7899988 88999
Q ss_pred -------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 245 -------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 245 -------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
++||++++||+++++|+++|++|+++|+|++.+++.. .+...++..+++++|+++|++++||||||+|
T Consensus 242 t~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p-----~~~~~~~~~a~~~al~~agl~~~dId~ie~~ 316 (392)
T 2vu1_A 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP-----KVMGTGPIPASRKALERAGWKIGDLDLVEAN 316 (392)
T ss_dssp CSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECCG-----GGGGGTHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred eCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeecCh-----hhcchhHHHHHHHHHHHcCCCHHHcCEEEec
Confidence 9999999999999999999999999999999986422 2334577899999999999999999999988
Q ss_pred CCCCCCCCHHHHHHH--HHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGL--KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395 (831)
Q Consensus 318 gtGT~~gD~~E~~al--~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~ 395 (831)
|..|..++ .+.|+-. ..++++++.|.++||++||+|+.++++++++|+++
T Consensus 317 -------d~f~~~~l~~~~~lg~~----------~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~----------- 368 (392)
T 2vu1_A 317 -------EAFAAQACAVNKDLGWD----------PSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR----------- 368 (392)
T ss_dssp -------CSBHHHHHHHHHHHCCC----------GGGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH-----------
T ss_pred -------cccHHHHHHHHHHcCCC----------cccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc-----------
Confidence 66676664 5666531 14688999999999999999999999999999884
Q ss_pred CCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 396 n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++++++..+.||.+..+|||.
T Consensus 369 ---------------------------~~~~gl~~~~~ggG~~~a~~~e~ 391 (392)
T 2vu1_A 369 ---------------------------GARKGLATLCIGGGMGVAMCIES 391 (392)
T ss_dssp ---------------------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred ---------------------------CCCEEEEEEecccchheEEEEEe
Confidence 12467776655589999999985
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=308.64 Aligned_cols=268 Identities=19% Similarity=0.237 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
..+|+++++++||+|||+++++++ +||+|+...++. ..+.++.+|++.||+ ++|+
T Consensus 55 ~~~La~~Aa~~AL~dAGl~~~~Id----~vi~g~~~~~~~-------------------~~~~~a~~va~~lGl~~~~p~ 111 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNLNPSEVG----DIVVGTVLAPGS-------------------QRASECRMAAFYAGFPETVAV 111 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----CEEEECCSSBHH-------------------HHHHHHHHHHHHTTCCTTSCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeecCccC-------------------CCChHHHHHHHHcCCCCCceE
Confidence 357999999999999999998887 699998766542 124578999999999 8999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cc-------------hh-------HHH-------------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PS-------------NT-------IAY------------- 221 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~-------------~~-------~~~------------- 221 (831)
++|+++|+|++.||++|+++|++|+||++||||+|.+.. |. .+ +..
T Consensus 112 ~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~~~~gisr 191 (442)
T 2wu9_A 112 RTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSR 191 (442)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHHHHHTCCH
T ss_pred EEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999998654 21 00 100
Q ss_pred ---------H--------HcCCCCC------------------------CC------------CCcc-ccCCCCcce---
Q psy11395 222 ---------Y--------KAGMLSR------------------------DG------------ICKT-FDKNADGYV--- 244 (831)
Q Consensus 222 ---------~--------~~g~ls~------------------------~g------------~~~~-Fd~~a~G~v--- 244 (831)
+ ..|.+.. |+ .++| ||. +|++
T Consensus 192 e~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~--~G~vt~~ 269 (442)
T 2wu9_A 192 QEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK--DGTTTAG 269 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--TCCCCGG
T ss_pred HHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--CCCeech
Confidence 0 1223321 22 2345 774 7888
Q ss_pred ----ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 245 ----RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 245 ----~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
++||+++|||++++.|+++|++|+++|+|++.+++... +...++..++++||++||++++||||||+|+++
T Consensus 270 n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~p~-----~~~~~~~~A~~~Al~~AGl~~~DId~iE~h~af 344 (442)
T 2wu9_A 270 NSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPA-----IMGIGPAVAIPAAVKAAGLELDDIDLFEINEAF 344 (442)
T ss_dssp GBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCGG-----GGGGHHHHHHHHHHHHTTCCGGGCCEEEECCSB
T ss_pred hcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecCCch-----hcchHHHHHHHHHHHHcCCCHHHCCEEEEeCCC
Confidence 69999999999999999999999999999999877321 124577899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
|. .|+.++. .|+-.. .++.+.+.+..+||++||+|+.++++++++|+++. +
T Consensus 345 t~----~~l~~~~-~lG~~~----------~~vN~~GG~~a~GHp~GAsG~~~~~~~v~~Lr~~~-~------------- 395 (442)
T 2wu9_A 345 AS----QFVYCRN-KLGLDP----------EKINVNGGAMAIGHPLGATGARCVATLLHEMKRRG-K------------- 395 (442)
T ss_dssp HH----HHHHHHH-HHTCCG----------GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHC-T-------------
T ss_pred hH----HHHHHHH-HhCCCC----------CCcCCCccHhhcCCchhHHHHHHHHHHHHHHhccC-C-------------
Confidence 95 5777774 444210 23444444445899999999999999999999863 0
Q ss_pred CCCCCceeecccccCccccccccccEEEE-cccCCCCceeEEEEcccc
Q psy11395 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGV-SSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 401 ~~~~~~~~~~~~~~w~~~~~~~~~r~a~v-~sfG~gG~nahvil~~~~ 447 (831)
+.+++++ +++| ||.|+++||+++.
T Consensus 396 ----------------------~~~~glas~~~G-GG~~~a~v~~~~~ 420 (442)
T 2wu9_A 396 ----------------------DCRFGVVSMCIG-TGMGAAAVFERGD 420 (442)
T ss_dssp ----------------------TCCEEEEEEEET-TTEEEEEEEEECS
T ss_pred ----------------------CCCEEEEEeecc-cchheEEEEEecc
Confidence 1256775 6688 9999999999874
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-34 Score=332.04 Aligned_cols=382 Identities=11% Similarity=0.021 Sum_probs=268.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG- 173 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G- 173 (831)
++| ..|+.+++++||+|||+++++++....|++++.+....... .........++..++..+|+.+
T Consensus 40 ~s~-~dL~a~Ai~~AL~dAGl~p~~Vd~vI~g~~~~~~~~~~~~~------------~~~~g~~~~~~~~va~~lGl~~~ 106 (520)
T 4egv_A 40 MSS-VELATEAAKAALHDCGADADTVARAIDTVAGTRQFEISGPA------------SAPLGVSSNYPRSVARNIGADPA 106 (520)
T ss_dssp CCH-HHHHHHHHHHHHHHTSSCHHHHHHHCCEEEECCC--------------------------CCHHHHHHHHHTCCCS
T ss_pred CCH-HHHHHHHHHHHHHHhCcCHHHcceEEEEEeecccccccchh------------hhhhccccCHHHHHHHHcCCCCc
Confidence 444 34889999999999999999887655566655432211100 0111223456788999999987
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHH------------------------------
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYK------------------------------ 223 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~------------------------------ 223 (831)
|.++++.+|+|++.+|++|+++|++|+||++|+||+|.|.+...+.....
T Consensus 107 ~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 186 (520)
T 4egv_A 107 HAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEYTIRH 186 (520)
T ss_dssp EEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------CTTGGG
T ss_pred eEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHHHHHHh
Confidence 78889999999999999999999999999999999999864322110000
Q ss_pred -------------------cCC---------------------CCCCCC--------------------CccccCCCCcc
Q psy11395 224 -------------------AGM---------------------LSRDGI--------------------CKTFDKNADGY 243 (831)
Q Consensus 224 -------------------~g~---------------------ls~~g~--------------------~~~Fd~~a~G~ 243 (831)
.+. ..++.. +.|+..-.|..
T Consensus 187 g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~ta~nas 266 (520)
T 4egv_A 187 GLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPRLMVAR 266 (520)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEGGGCC-
T ss_pred CCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCcccccccC
Confidence 000 000000 01121223455
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCC---HHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN---PIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~---~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
..+||++++||.+++.|++.|.++++.|++++.........+..|+ ..++..+++++|+++|++++|||++|+|..+
T Consensus 267 ~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~~dAF 346 (520)
T 4egv_A 267 DQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLYSCF 346 (520)
T ss_dssp -CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEECCSS
T ss_pred CCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEEeCCc
Confidence 5799999999999999999999999999888876544433333333 4688999999999999999999999999766
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Q psy11395 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400 (831)
Q Consensus 321 T~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~ 400 (831)
+ ++..+..+.++-... ...++.+++.+.++||+.+|+|+.+++|++++|+++..+..++ .+|+.+.
T Consensus 347 ~-----~~~l~~~~~lG~~~~-------~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~~~~~~L~--~~~gg~~ 412 (520)
T 4egv_A 347 P-----FPVFNICDGTGLATD-------DPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDKPGQFALV--GANGGIA 412 (520)
T ss_dssp S-----HHHHHHHHHHCCCTT-------CTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHSTTCEEEE--EEEETTT
T ss_pred H-----HHHHHHHHHhCCCCC-------CCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcCCCCceEE--eCCCCee
Confidence 5 344444455542111 1146778888888999999999999999999999998887766 6899999
Q ss_pred CCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccccccccccccccccCCCCCCCeEEEeccCCHhH
Q psy11395 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQ 480 (831)
Q Consensus 401 ~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lSa~~~~~ 480 (831)
+..+.+.+.+++++|+.. +++|+++|++ +|+|++|++.+..... .+... ......|..++||+|+++.
T Consensus 413 ~~~~~~~l~~~~~~w~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~a~--~~~~t--~~~~~~~~~~~~~~r~~~~ 480 (520)
T 4egv_A 413 SKYSVGIYSTEPADWVAD---NSAQLQAEHD-----AQPKVAITEKADGTGT--IETYT--VRYDWTPHTGIIIGRLDDG 480 (520)
T ss_dssp TEEEEEEEESSCCCCCCC---CHHHHHHHHH-----TSCCCCBCSSCCEEEE--EEEEE--EESSEESCEEEEEEECSSC
T ss_pred eeeeEEEEcCCCCCCCCC---CCCccccccc-----CCCCcccccCCCCCCC--CCCCC--cCCCCCcceEEEEEECchh
Confidence 999999999999999764 4688899998 9999999987643211 01000 0123457789999999998
Q ss_pred HHHHH----HHHHHHHhcccccCccHHHHHHHHHhccccCCceEEE
Q psy11395 481 LLIYV----KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLAL 522 (831)
Q Consensus 481 l~~~~----~~~~~~l~~~~~~~~~l~~~~~tl~~~r~~~~~r~a~ 522 (831)
|+.++ ..+...+... ..+.+++.++|..+.||.++
T Consensus 481 ~R~~A~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~ra~~ 519 (520)
T 4egv_A 481 SRFLAKTKDEDLVKLLSEG-------DPIGAKIVVTPGEKSNRAVL 519 (520)
T ss_dssp CEEEEEECCHHHHHHHHHS-------CCTTCEEEEECCSSCCEEEE
T ss_pred hHhhhcCCCHHHHhhccCc-------CcccCeEEEeccCCCccccc
Confidence 87766 3343333221 12678888999999999875
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-32 Score=305.46 Aligned_cols=265 Identities=18% Similarity=0.236 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
.++|+++++++||+|||+++++++ +||+|+...++. ....+..+++.+|+ ++|+
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~~id----~v~~g~~~~~~~--------------------~~~~a~~~a~~lGl~~~~p~ 110 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPEQLG----DICVGNVLQPGA--------------------GAIMARIAQFLSDIPETVPL 110 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----CEEEECSSSBGG--------------------GHHHHHHHHHHTTCCTTSCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCccc--------------------cccHHHHHHHHcCCCCCceE
Confidence 578999999999999999998887 699998765542 13466778899999 7899
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch---------------------hHHH-------------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN---------------------TIAY------------- 221 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~---------------------~~~~------------- 221 (831)
++|+++|+|++.||++|+++|++|+||++||||+|.+..... .+.+
T Consensus 111 ~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~gitr 190 (418)
T 2iik_A 111 STVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISR 190 (418)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHHHHHTTCCH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999998754210 0110
Q ss_pred ----------------H-HcC-----------------------CCCCCCCCcc-------------ccCCC-----Ccc
Q psy11395 222 ----------------Y-KAG-----------------------MLSRDGICKT-------------FDKNA-----DGY 243 (831)
Q Consensus 222 ----------------~-~~g-----------------------~ls~~g~~~~-------------Fd~~a-----~G~ 243 (831)
. ..+ .+++++.||| ||.++ ||+
T Consensus 191 e~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~~~t~~d~~ 270 (418)
T 2iik_A 191 EKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSS 270 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTCCCCSTTBC
T ss_pred HHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCCceeecccc
Confidence 0 112 2455778998 99875 999
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCC
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKL 323 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~ 323 (831)
+++||++++||++++.|+++|++|+++|+|++.++... .+.+.++..++++||++|||+++||||||+|++++ .
T Consensus 271 ~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p-----~~~~~~~~~a~~~al~~Agl~~~dId~vE~h~af~-~ 344 (418)
T 2iik_A 271 QVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPP-----DIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFA-S 344 (418)
T ss_dssp CCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCG-----GGGGGHHHHHHHHHHHHHTCCGGGEEEEEECCSBH-H
T ss_pred CCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccCCc-----hhcchhHHHHHHHHHHHcCCCHHHCCeeeeeccch-H
Confidence 99999999999999999999999999999999875321 11235788899999999999999999999998665 6
Q ss_pred CCHHHHHHHHHHhhhhhhhhcccccccccccccccC--CCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 324 GDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVK--TNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 324 gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K--~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+|.+|+++|. |.. .+|...+ .++||++||+|+.++++++++|+++
T Consensus 345 ~~~~~~~~lg--~~~--------------~~vN~~GG~~a~GHp~GAsG~~~~~~~~~~L~~~----------------- 391 (418)
T 2iik_A 345 QAAYCVEKLR--LPP--------------EKVNPLGGAVALGHPLGCTGARQVITLLNELKRR----------------- 391 (418)
T ss_dssp HHHHHHHHHT--CCG--------------GGBCTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHcC--CCc--------------cccCCCCCeeeecCChhhhHHHHHHHHHHHHHhc-----------------
Confidence 7888888874 211 1344444 4689999999999999999999872
Q ss_pred CCCCceeecccccCcccccccccc-EEEEcccCCCCceeEEEEccc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLR-IAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r-~a~v~sfG~gG~nahvil~~~ 446 (831)
..+ +++++..+.||....+|||..
T Consensus 392 ---------------------~~~~~gl~~~c~ggG~g~a~~~e~~ 416 (418)
T 2iik_A 392 ---------------------GKRAYGVVSMCIGTGMGAAAVFEYP 416 (418)
T ss_dssp ---------------------TSCEEEEEEEEETTTEEEEEEEEEC
T ss_pred ---------------------CCCeeeEEEEeeccchhheEEEecc
Confidence 113 678888888999999999853
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-32 Score=304.84 Aligned_cols=240 Identities=19% Similarity=0.197 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
.++|+++++++||+|||+++++++ ++++|+..+++. ...++++|++.||+ +||+
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~~id----~~~~g~~~~~~~--------------------~~~~a~~va~~lgl~~~~p~ 87 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKEEVK----EAYMGNVLQGGE--------------------GQAPTRQAVLGAGLPISTPC 87 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCTTS--------------------CSCHHHHHHHHTTCCTTCCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCCC--------------------CchHHHHHHHHcCCCCCceE
Confidence 367999999999999999988887 577776543321 12368999999999 8999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch-------------------hHH----------------
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN-------------------TIA---------------- 220 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~-------------------~~~---------------- 220 (831)
++|+++|+|++.||++|+++|++|+||++||||+|.+..... +..
T Consensus 88 ~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a~~ 167 (395)
T 2ib8_A 88 TTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAEN 167 (395)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTEEHHHHHHH
T ss_pred EEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccchHHHHHHH
Confidence 999999999999999999999999999999999997654211 000
Q ss_pred -HHHcC-------------------------------------------CCCCCCCCcc--ccC---------CCCcce-
Q psy11395 221 -YYKAG-------------------------------------------MLSRDGICKT--FDK---------NADGYV- 244 (831)
Q Consensus 221 -~~~~g-------------------------------------------~ls~~g~~~~--Fd~---------~a~G~v- 244 (831)
+.+.+ +++.|+.+++ ||. +++|++
T Consensus 168 ~~~~~g~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~f~~~~g~vt 247 (395)
T 2ib8_A 168 TAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVT 247 (395)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCTTCSSSCCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCccccCCCCCcc
Confidence 11222 1233334443 665 568999
Q ss_pred ------ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 245 ------RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 245 ------~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
++||++++||++++.|+++|++|+++|+|++.++.. ..+.+.++..+++++|+++|++++||||||.|
T Consensus 248 ~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ie~~- 321 (395)
T 2ib8_A 248 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVE-----PIDFPIAPVYAASMVLKDVGLKKEDIAMWEVN- 321 (395)
T ss_dssp TTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHHTCCGGGEEEEEEC-
T ss_pred cccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEeccC-----hhhccccHHHHHHHHHHHcCCCHHHcCEEEEc-
Confidence 999999999999999999999999999999986411 11234578899999999999999999999976
Q ss_pred CCCCCCCHHHHHHHHHH--hhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 319 TGTKLGDPIEIQGLKNA--FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~--f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
|+.|..+|..+ |+-. ..++++++.|.++||+.||+|+.++++++++|++
T Consensus 322 ------D~f~~~~l~~~e~lg~~----------~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~ 372 (395)
T 2ib8_A 322 ------EAFSLVVLANIKMLEID----------PQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ 372 (395)
T ss_dssp ------CSBHHHHHHHHHHHTCC----------GGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHSCT
T ss_pred ------cccHHHHHHHHHHcCCC----------ccccCCCcchhhcCCChhHHHHHHHHHHHHHHhh
Confidence 78888888877 6421 1467899999999999999999999999999976
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=303.40 Aligned_cols=266 Identities=16% Similarity=0.184 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
...|+++++++||+|||+++++++ +|++|+...++. ...++.++++.+|+ ++|+
T Consensus 31 ~~~L~~~A~~~AL~~agl~~~dId----~vi~g~~~~~~~--------------------~~~~a~~v~~~lGl~~~~p~ 86 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANITPDMID----ESLLGGVLTAGL--------------------GQNIARQIALGAGIPVEKPA 86 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC----EEEEECSCCTTS--------------------CSCHHHHHHHHTTCCTTSCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeecCCCC--------------------CchHHHHHHHHcCCCCCceE
Confidence 457999999999999999999998 799998755431 12468899999999 5899
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH--------------------------------H---
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI--------------------------------A--- 220 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~--------------------------------~--- 220 (831)
++|+++|+|++.||+.|+++|++|+||++||+|+|.+..+.... .
T Consensus 87 ~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 166 (396)
T 4dd5_A 87 MTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITA 166 (396)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTTTEEHHHHH
T ss_pred EEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhcccccccccchHHHHH
Confidence 99999999999999999999999999999999999876522110 0
Q ss_pred ---HH------------------------HcC------------------CCCCCCCCcc-------------ccC----
Q psy11395 221 ---YY------------------------KAG------------------MLSRDGICKT-------------FDK---- 238 (831)
Q Consensus 221 ---~~------------------------~~g------------------~ls~~g~~~~-------------Fd~---- 238 (831)
+. ..| .+++|+.+|+ |+.
T Consensus 167 ~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~v~~p~g~~ 246 (396)
T 4dd5_A 167 ENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTV 246 (396)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCBSSSTTCSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCCccCCCCCe
Confidence 00 011 1344444443 442
Q ss_pred -CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEec
Q psy11395 239 -NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECH 317 (831)
Q Consensus 239 -~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~H 317 (831)
..|...++||++++||+++++|+++|++|+++|+|++++++. +.+.+.++..+++++|+++|++|+||||||+|
T Consensus 247 t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~ 321 (396)
T 4dd5_A 247 TAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVD-----PKIMGYGPVPATKKALEAANMTIEDIDLVEAN 321 (396)
T ss_dssp BTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred ecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecCC-----CCcccHHHHHHHHHHHHHcCCCHHHcCEEEec
Confidence 356667899999999999999999999999999999998753 23335578999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCC
Q psy11395 318 GTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397 (831)
Q Consensus 318 gtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~ 397 (831)
++++ +|..++.+.|+-. ..++++++.|.++||++||+|+.++++++++|+++
T Consensus 322 d~f~-----~~~~~~~~~lg~~----------~~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L~~~------------- 373 (396)
T 4dd5_A 322 EAFA-----AQSVAVIRDLNID----------MNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR------------- 373 (396)
T ss_dssp CSBH-----HHHHHHHHHHTCC----------TTSBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-------------
T ss_pred ChHH-----HHHHHHHHHhCCC----------CCccCCCCchhhccCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 7653 6777888888631 14688999999999999999999999999999984
Q ss_pred CCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 398 ~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++..+.||...++|||+
T Consensus 374 -------------------------~~~~gl~~~c~ggG~g~a~~~e~ 396 (396)
T 4dd5_A 374 -------------------------DAKTGLATLCIGGGMGTTLIVKR 396 (396)
T ss_dssp -------------------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred -------------------------CCCeEEEEEcccCCceeEEEEeC
Confidence 23689999999999999999974
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=302.43 Aligned_cols=266 Identities=17% Similarity=0.216 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
...|+++++++||+|||+++++++ +|++|+...++. ...++.++++.+|+ ++|+
T Consensus 29 ~~~L~~~A~~~Al~~agl~~~~Id----~v~~g~~~~~~~--------------------~~~~a~~i~~~lGl~~~~p~ 84 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGVEPHEVD----EVILGHCIQRTD--------------------EANTARTAALAAGFPDTVTG 84 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC----EEEEECSSCCGG--------------------GCSHHHHHHHHTTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCHhHCC----EEEEEEccCCCc--------------------cchHHHHHHHHcCCCCCceE
Confidence 457999999999999999999998 689987654431 12367899999999 5899
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH-------------------------------H----
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI-------------------------------A---- 220 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~-------------------------------~---- 220 (831)
++|+++|+|++.||++|+++|++|+||++||+|+|.+....... .
T Consensus 85 ~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~ 164 (394)
T 3ss6_A 85 YTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAE 164 (394)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTCCBHHHHHH
T ss_pred EEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccccchHHHHHH
Confidence 99999999999999999999999999999999999876432100 0
Q ss_pred --HHH------------------------cC------------------CCCCCCCCcc-------------ccC-----
Q psy11395 221 --YYK------------------------AG------------------MLSRDGICKT-------------FDK----- 238 (831)
Q Consensus 221 --~~~------------------------~g------------------~ls~~g~~~~-------------Fd~----- 238 (831)
+.+ .| ++++++.+|+ |+.
T Consensus 165 ~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pvf~~~g~~t 244 (394)
T 3ss6_A 165 NLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVT 244 (394)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBSSSTTCCCB
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCccCCCCcee
Confidence 000 00 3566777775 764
Q ss_pred CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 239 ~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
..|+..++||++++||+++++|+++|++|+++|+|+++++.. ..+...++..+++++|+++|++|+||||||+|.
T Consensus 245 ~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~agl~~~dId~ve~~d 319 (394)
T 3ss6_A 245 AGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVD-----PKIMGIGPAPAIRKGLEKVDWSLEDADLLEINE 319 (394)
T ss_dssp STTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGGGCSEEEECC
T ss_pred cCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecCC-----CccchHHHHHHHHHHHHHcCCCHHHcCEEEeCC
Confidence 256777899999999999999999999999999999998632 222345688999999999999999999999996
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCC
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~ 398 (831)
+. .+|..++.+.|+-.. .++++++.|.++||+.||||+.++++++++|+++
T Consensus 320 ~f-----a~~~~~~~~~lg~~~----------~~v~~~gg~~~~GH~~gasG~~~~~~~~~~L~~~-------------- 370 (394)
T 3ss6_A 320 AF-----AAQYLAVEKELDLDR----------EKVNVNGSGVGLGHPIGCTGARITVSLIHELKRR-------------- 370 (394)
T ss_dssp SB-----HHHHHHHHHHHTCCG----------GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ch-----HHHHHHHHHHhCCCC----------CCCCCCcchHhhCCcHHHHHHHHHHHHHHHHHhc--------------
Confidence 64 378888888886321 4688999999999999999999999999999883
Q ss_pred CCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 399 i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++-.+.||....+|||.
T Consensus 371 ------------------------~~~~gl~~~c~ggG~g~a~~~e~ 393 (394)
T 3ss6_A 371 ------------------------GLEKGIASLCVGGGIGVALFIEA 393 (394)
T ss_dssp ------------------------TCCEEEEEEEETTTEEEEEEEEE
T ss_pred ------------------------CCCEEEEEEccCcCceeEEEEEc
Confidence 23578888888999999999985
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=296.56 Aligned_cols=242 Identities=17% Similarity=0.162 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHcC----CCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--
Q psy11395 98 QQRILLELSWKTIEDAG----YDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-- 171 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG----~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl-- 171 (831)
.++|+++++++||+||| +++++++ +|++|+...++. .+.++.+|++.||+
T Consensus 35 ~~~La~~Aa~~Al~~Ag~~~~l~~~~id----~v~~g~~~~~~~--------------------~~~~a~~va~~lGl~~ 90 (393)
T 1afw_A 35 TDYLLYNFLNEFIGRFPEPLRADLNLIE----EVACGNVLNVGA--------------------GATEHRAACLASGIPY 90 (393)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTCGGGCC----CEEEECSSSBGG--------------------GHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHCC----EEEEEecCCCCC--------------------CChHHHHHHHHcCCCC
Confidence 35789999999999999 9988887 699998765441 24688999999999
Q ss_pred CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc-cch---------------------h--HHHH-----
Q psy11395 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH-PSN---------------------T--IAYY----- 222 (831)
Q Consensus 172 ~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~-p~~---------------------~--~~~~----- 222 (831)
+||+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.. + +...
T Consensus 91 ~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~ 170 (393)
T 1afw_A 91 STPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVA 170 (393)
T ss_dssp TSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHHHHHHHHH
T ss_pred CceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHHHHHHHHH
Confidence 7999999999999999999999999999999999999997543 110 0 1100
Q ss_pred -H------------------------cC---------------CCCCCCCCc------------c-ccCCCCcce-----
Q psy11395 223 -K------------------------AG---------------MLSRDGICK------------T-FDKNADGYV----- 244 (831)
Q Consensus 223 -~------------------------~g---------------~ls~~g~~~------------~-Fd~~a~G~v----- 244 (831)
+ .| .+++|+.+| | ||.++ |++
T Consensus 171 ~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G~vt~~~~ 249 (393)
T 1afw_A 171 ANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-GTTTAGNA 249 (393)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----CCCBTTTB
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-CCeechhc
Confidence 0 01 134555444 5 87654 777
Q ss_pred --ecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCC
Q psy11395 245 --RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTK 322 (831)
Q Consensus 245 --~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~ 322 (831)
++||++++||+++++|+++|++|+++|+|++.+++... +...++..++++||++||++++||||||+|+++|.
T Consensus 250 ~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~a~~~al~~Agl~~~dId~ve~h~~ft~ 324 (393)
T 1afw_A 250 SQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPE-----IMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAA 324 (393)
T ss_dssp CCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCGG-----GGGGHHHHHHHHHHHHHTCCGGGCSEEEECCSBHH
T ss_pred CcccchhheeeEecHHHHHHcCCCccEEEEEEEEeccChh-----hcchhHHHHHHHHHHHcCCCHHHCCEEEEeccCHH
Confidence 79999999999999999999999999999999987432 22357789999999999999999999999999994
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 323 LGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 323 ~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
.|+..+.. |+-.. .++.+.+.+..+||++||+|+.++++++++|+++
T Consensus 325 ----~~l~~~~~-lg~~~----------~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~ 371 (393)
T 1afw_A 325 ----QALYCIHK-LGIDL----------NKVNPRGGAIALGHPLGCTGARQVATILRELKKD 371 (393)
T ss_dssp ----HHHHHHHH-HTCCG----------GGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTT
T ss_pred ----HHHHHHHH-hCCCC----------cCcCCCCChhhcCCchhhHHHHHHHHHHHHHhhc
Confidence 57666643 44210 2455555555699999999999999999999884
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=295.47 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=212.8
Q ss_pred CHHHHHHHHHHHHHHHHc-CCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--C
Q psy11395 96 DPQQRILLELSWKTIEDA-GYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--T 172 (831)
Q Consensus 96 dp~~rl~l~aa~~ALedA-G~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~ 172 (831)
.++++|+++++++||+|| |+++++++ +|++|+...++. ....++.++++.+|+ .
T Consensus 25 ~~~~~L~~~a~~~Al~~a~gi~~~~Id----~v~~g~~~~~~~-------------------~~~~~a~~~~~~~Gl~~~ 81 (387)
T 3goa_A 25 VRAEDLSAHLMRSLLARNPSLTAATLD----DIYWGCVQQTLE-------------------QGFNIARNAALLAEIPHS 81 (387)
T ss_dssp SCHHHHHHHHHHHHHHHCTTSCGGGCC----EEEEECSCCSBT-------------------TTTTHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHHhccCCCHHHcC----EEEEEcccCCcc-------------------cccHHHHHHHHHcCCCCC
Confidence 456789999999999999 99999998 699997654431 012468899999999 6
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchh-------------------------HHH------
Q psy11395 173 GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT-------------------------IAY------ 221 (831)
Q Consensus 173 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~-------------------------~~~------ 221 (831)
+|+++|+++|+|++.||++|+++|++|+||++||+|+|.+..+... ..+
T Consensus 82 ~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~g~t 161 (387)
T 3goa_A 82 VPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLSRLHGIS 161 (387)
T ss_dssp SCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHHHHHTTCC
T ss_pred CcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999999987653221 000
Q ss_pred ------------------HHcC-------------------CCCCCCCCcc-------------ccC------CCCccee
Q psy11395 222 ------------------YKAG-------------------MLSRDGICKT-------------FDK------NADGYVR 245 (831)
Q Consensus 222 ------------------~~~g-------------------~ls~~g~~~~-------------Fd~------~a~G~v~ 245 (831)
...| .++.|+.+|+ |+. ..|+..+
T Consensus 162 re~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t~~~~~~~ 241 (387)
T 3goa_A 162 REMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSAL 241 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCCGGGBCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCceecccCCCc
Confidence 0011 2344555554 664 2567778
Q ss_pred cCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCC
Q psy11395 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGD 325 (831)
Q Consensus 246 gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD 325 (831)
+||++++||+++++|+++|++|+++|+|++.++++.... ..++..+++++|+++|++|+||||||+|+++|.
T Consensus 242 ~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~~~~~-----~~~~~~a~~~al~~agl~~~did~ve~h~~f~~--- 313 (387)
T 3goa_A 242 SDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIM-----GYGPVPASKLALKKAGLSASDIDVFEMNEAFAA--- 313 (387)
T ss_dssp EEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCTTST-----TCTHHHHHHHHHHHHTCCGGGCSEEEECCSBHH---
T ss_pred CccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCCCCcc-----hHHHHHHHHHHHHHcCCCHHHcCEEEEeCcchH---
Confidence 999999999999999999999999999999998865432 234688999999999999999999999999984
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCC
Q psy11395 326 PIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSH 405 (831)
Q Consensus 326 ~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~ 405 (831)
.+...+ +.|+--... ..++++.+.|..+||++||+|+.++++++++|+++
T Consensus 314 -~~~~~~-~~lg~~~~~-------~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~--------------------- 363 (387)
T 3goa_A 314 -QILPCI-KDLGLMEQI-------DEKINLNGGAIALGHPLGCSGARISTTLINLMERK--------------------- 363 (387)
T ss_dssp -HHHHHH-HHTTCGGGH-------HHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred -HHHHHH-HHhCCCcCC-------CccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc---------------------
Confidence 344333 333310000 13566778888899999999999999999999972
Q ss_pred ceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 406 LYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 406 ~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++..+-||...++|||.
T Consensus 364 -----------------~~~~gl~~~c~ggG~g~a~~~e~ 386 (387)
T 3goa_A 364 -----------------DAQFGLATMCIGLGQGIATVFER 386 (387)
T ss_dssp -----------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred -----------------CCCEEEEEeccCcCceEEEEEEe
Confidence 23567777777889999999985
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=297.10 Aligned_cols=266 Identities=21% Similarity=0.217 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
...|+++++++||+|||+++++++ +|++|+...++. ...++.++++.+|+ ++|+
T Consensus 29 ~~~L~~~a~~~Al~~agi~~~~Id----~v~~g~~~~~~~--------------------~~~~a~~~~~~lGl~~~~p~ 84 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGLNLSEID----EVIIGNVLQTGL--------------------GQNVARQIAINAGIPNSVPS 84 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC----EEEEECCCCSST--------------------TCCHHHHHHHHTTCCTTSCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCCC--------------------cchHHHHHHHHcCCCCCceE
Confidence 456999999999999999999998 688887644321 12368899999999 6899
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhH--------------------------------H---
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI--------------------------------A--- 220 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~--------------------------------~--- 220 (831)
++|+++|+|++.||+.|+++|++|+||++||+|+|.+....... .
T Consensus 85 ~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a 164 (395)
T 4e1l_A 85 YTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITA 164 (395)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETTHHHHHHHH
T ss_pred EEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhcccccccccccchHHHHH
Confidence 99999999999999999999999999999999999876522100 0
Q ss_pred ---HH------------------------HcC-------------------CCCCCCCCcc-------------ccC---
Q psy11395 221 ---YY------------------------KAG-------------------MLSRDGICKT-------------FDK--- 238 (831)
Q Consensus 221 ---~~------------------------~~g-------------------~ls~~g~~~~-------------Fd~--- 238 (831)
+. ..| .+.+++.+|+ |+.
T Consensus 165 ~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~~v~~~~g~ 244 (395)
T 4e1l_A 165 ENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKPAFKKDGT 244 (395)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCCBSSSTTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCCCccCCCCC
Confidence 00 000 2445555553 542
Q ss_pred --CCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEe
Q psy11395 239 --NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIEC 316 (831)
Q Consensus 239 --~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~ 316 (831)
..|+..++||++++||+++++|+++|++|+++|+|++++++... +.+.++..+++++|+++|++++||||||+
T Consensus 245 ~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~ai~~al~~agl~~~dId~ve~ 319 (395)
T 4e1l_A 245 VTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPE-----VMGTGPIPATRKALKKAGLSINDIDLIEA 319 (395)
T ss_dssp CBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECCGG-----GTTCTHHHHHHHHHHHTTCCGGGCSEEEE
T ss_pred eeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccCCCC-----cchHHHHHHHHHHHHHcCCCHHHcCEEEe
Confidence 24667789999999999999999999999999999999875322 22345789999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCC
Q psy11395 317 HGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLN 396 (831)
Q Consensus 317 HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n 396 (831)
|... .+|..++.+.|+-. ..++++++.|.++||++||||+.++++++++|+++
T Consensus 320 ~d~f-----a~~~~~~~~~lg~~----------~~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L~~~------------ 372 (395)
T 4e1l_A 320 NEAF-----AAQALAVKNELQID----------SSKLNVNGGAIALGHPIGASGARILVTLIYEMQKR------------ 372 (395)
T ss_dssp CCSB-----HHHHHHHHHHHTCC----------GGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH------------
T ss_pred cChh-----HHHHHHHHHHhCCC----------CCCCCcCCchhhcCCcHHHHHHHHHHHHHHHHHhc------------
Confidence 8553 37888888888631 14688999999999999999999999999999883
Q ss_pred CCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 397 KNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++..+.||....+|||.
T Consensus 373 --------------------------~~~~gl~~~c~ggG~g~a~~~e~ 395 (395)
T 4e1l_A 373 --------------------------KVETGLATLCIGGGQGISMVVSR 395 (395)
T ss_dssp --------------------------TCSEEEEEEESSTTEEEEEEEEC
T ss_pred --------------------------CCCEEEEEEccCCCceEEEEEeC
Confidence 23578888889999999999973
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=291.05 Aligned_cols=294 Identities=14% Similarity=0.142 Sum_probs=214.4
Q ss_pred EEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc-
Q psy11395 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE- 93 (831)
Q Consensus 15 IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~- 93 (831)
+.|+|+|+.+|....+.++|++.+.. + +.|. ...+||..+...
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~--------~-~~~i---------------------------~~~~Gi~~r~~~~ 45 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDT--------S-DEWI---------------------------VTRTGIKERRVAA 45 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSC--------C-HHHH---------------------------HHHTCCCEEEECC
T ss_pred cEEEEEEEECCCceecHHHHHHHhCC--------C-HHHH---------------------------HHhcCceEEeecC
Confidence 57999999999876777888764321 1 1120 011233333221
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G 173 (831)
.-++..+|+++++++||+|||+++++++ +|++|+...++. ...++.+|+..||+++
T Consensus 46 ~~~~~~~la~~a~~~al~~ag~~~~~id----~vi~~~~~~~~~--------------------~~~~a~~v~~~lgl~~ 101 (322)
T 1ub7_A 46 EDEYTSDLAFKAVEDLLRRHPGALEGVD----AVIVATNTPDAL--------------------FPDTAALVQARFGLKA 101 (322)
T ss_dssp TTCCHHHHHHHHHHHHHHHSTTTTTTEE----EEEEECSSCSEE--------------------ESCHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCCC
Confidence 1356789999999999999999988776 688888653320 1136889999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+ ++.. .+|| +.+|+++|||++++|
T Consensus 102 ~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~~----------------~~~d-~~~~~~~GdGA~A~v 163 (322)
T 1ub7_A 102 FAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKII----------------DWND-RATAVLFGDGGGAAV 163 (322)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGTS----------------CTTC-HHHHTTBCCEEEEEE
T ss_pred EEEeeCccchHHHHHHHHHHHHHHcCCCCEEEEEEechh-cccc----------------Chhh-cccceeeccccEEEE
Confidence 999999999999999999999999999999999999984 3211 2444 567999999999999
Q ss_pred ecchhhhhhCCCceEEEE-eeeeeccCCCCC---CCCCC-----------CH--------HHHHHHHHHHHHHcCCCCCC
Q psy11395 254 LKPLSVALNDHDNIYAII-KGSAITHNGQSN---GLTAP-----------NP--------IQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 254 L~~~~~A~~~g~~i~a~I-~g~~~~~dg~~~---~~~~p-----------~~--------~~~~~~i~~al~~Agl~~~d 310 (831)
|++.+. +.+|++.+ .+.+...+.... +...| ++ ..+.++|+++|+++|++++|
T Consensus 164 L~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~d 239 (322)
T 1ub7_A 164 VGKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPED 239 (322)
T ss_dssp EECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred EEecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 998653 35677655 333322221100 00002 23 57889999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASL 390 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~ 390 (831)
||||++|+++|++.|. +.+.|+... .+ +-+.|.++||+.+|++...+.++ ++++.+.
T Consensus 240 id~~~~H~~~~~~~d~-----~~~~lg~~~----------~~--~~~~~~~~Gh~~~As~~~~l~~~---l~~g~~~--- 296 (322)
T 1ub7_A 240 IRLFVPHQANLRIIDA-----ARERLGLPW----------ER--VAVNVDRYGNTSTASIPLALKEA---VDAGRIR--- 296 (322)
T ss_dssp CSEEEECCSCHHHHHH-----HHHTTTCCG----------GG--BCCCHHHHCBCGGGHHHHHHHHH---HHHTSSC---
T ss_pred CCEEEEcCCCHHHHHH-----HHHHcCCCH----------HH--HHHHHHhhCcHHHHHHHHHHHHH---HHhCCCC---
Confidence 9999999999987664 556665311 12 33678899999999999988765 4555431
Q ss_pred CCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 391 ~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..+++++++||+||+|+++||+.
T Consensus 297 --------------------------------~g~~~l~~~~G~G~~~~~~vl~~ 319 (322)
T 1ub7_A 297 --------------------------------EGDHVLLVSFGAGLTWAAAVLTW 319 (322)
T ss_dssp --------------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred --------------------------------CCCEEEEEEEChhheeEEEEEEe
Confidence 12579999999999999999975
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-30 Score=278.50 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=212.3
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE 93 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~ 93 (831)
++.|+|+|+.+|....+.+++++.+. . + +.|.. +.+||..+...
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~------~-~~~i~---------------------------~~~Gi~~r~~~ 45 (309)
T 2ebd_A 2 GTKIIGTGVYLPKNVLTNFDLEKIVD--T------S-DEWIT---------------------------TRTGIKERRIA 45 (309)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHTTSS--C------C-HHHHH---------------------------HHHCCCEEEEC
T ss_pred ceEEEEEEEECCCceEcHHHHHHHcC--C------C-HHHHH---------------------------HHhCceeeeec
Confidence 48999999999987567777775431 1 1 11100 01122222111
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G 173 (831)
..++..+|+++++++||+|||+++++++ +|++|+...++. ...++.+|+..||++|
T Consensus 46 ~~~~~~~l~~~a~~~al~~ag~~~~~id----~v~~~~~~~~~~--------------------~~~~a~~v~~~lgl~~ 101 (309)
T 2ebd_A 46 KEETITYMATQAAKEALREANLSPEELD----LIILATLTPQKR--------------------FPSTACLVQAQLKAKG 101 (309)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTCCGGGCS----EEEEECSSCSSS--------------------SSCHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCCC
Confidence 1167899999999999999999988887 799998754330 1126899999999998
Q ss_pred -CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEE
Q psy11395 174 -PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252 (831)
Q Consensus 174 -ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaav 252 (831)
|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+... + .|+.+.+|+++|||++++
T Consensus 102 ~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~-----------~-------~~~~~~~~~~~gdGaaA~ 163 (309)
T 2ebd_A 102 VYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA-----------V-------DWEDRSTCVLFGDGAGAV 163 (309)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGT-----------C-------CTTCTTTTTTBCEEEEEE
T ss_pred ceEEecCccchHHHHHHHHHHHHHHCCCCCEEEEEEecccccc-----------c-------CccchhhccccccccEEE
Confidence 999999999999999999999999999999999999985321 1 133457899999999999
Q ss_pred EecchhhhhhCCCceEEEEeeeeeccCCCCC-CCCCC-------CHH--------HHHHHHHHHHHHcCCCCCCcceEEe
Q psy11395 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQSN-GLTAP-------NPI--------QQSYLLQKAWNESNIDVRSLGYIEC 316 (831)
Q Consensus 253 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-~~~~p-------~~~--------~~~~~i~~al~~Agl~~~dId~ie~ 316 (831)
||++.+.+ ..|++.+ ..++|... .++.| ++. .+.++++++|+++|++++|||||++
T Consensus 164 vL~~~~~~----~~i~~~~----~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~ 235 (309)
T 2ebd_A 164 VVTRSEDK----SDILATR----MYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIP 235 (309)
T ss_dssp EEEECSSS----CEEEEEE----EEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred EEEecCCC----CceeEEE----EEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 99987653 2355544 33444211 22333 443 7789999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCC
Q psy11395 317 HGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLN 396 (831)
Q Consensus 317 HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n 396 (831)
|+++|+..| ++.+.|+-.. .++ -+.|.++||+.+|+++..|.+++. ++.+.
T Consensus 236 H~~~~~~~~-----~~~~~lg~~~----------~~~--~~~~~~~Gh~~~As~~~~L~~~~~---~g~~~--------- 286 (309)
T 2ebd_A 236 HQANVRIIN-----ALAEKLNIPK----------EKV--FVNIQKYGNTSAASIPIALHEAIK---EGKVK--------- 286 (309)
T ss_dssp CCSCHHHHH-----HHHHHTTCCG----------GGB--CCCHHHHCBCGGGHHHHHHHHHHH---TTCCC---------
T ss_pred cCCCHHHHH-----HHHHHhCCCH----------HHh--hhhHhhhcchHHHHHHHHHHHHHH---cCCCC---------
Confidence 999998755 3556665311 122 356889999999999999988754 22111
Q ss_pred CCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 397 KNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..++++.+||.|.+...++|+
T Consensus 287 --------------------------~G~~~l~~~~G~G~~~~~~~l~ 308 (309)
T 2ebd_A 287 --------------------------RGDLILMTAMGGGLTWGAVLLR 308 (309)
T ss_dssp --------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred --------------------------CCCEEEEEEEchhhhhEEEEEE
Confidence 1246889999999999999985
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-30 Score=279.75 Aligned_cols=293 Identities=16% Similarity=0.205 Sum_probs=214.9
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE 93 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~ 93 (831)
++.|+|+|+.+|....+.++||+.+. . + +.|. .+.+||..+...
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~------~-~~~i---------------------------~~~~Gi~~r~~~ 45 (317)
T 1hnj_A 2 YTKIIGTGSYLPEQVRTNADLEKMVD--T------S-DEWI---------------------------VTRTGIRERHIA 45 (317)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHTTSS--C------C-HHHH---------------------------HHHHCCCEEEEC
T ss_pred CcEEEEEEEeCCCceecHHHHHHHhC--C------C-HHHH---------------------------HHHhCceEEEec
Confidence 48999999999987667788876432 1 1 1120 012234433322
Q ss_pred -cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC
Q psy11395 94 -SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT 172 (831)
Q Consensus 94 -~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 172 (831)
..++..+|+++++++||+|||+++++++ +|++|+...++. ...++.+|++.||++
T Consensus 46 ~~~~~~~~l~~~a~~~al~~ag~~~~~id----~vi~g~~~~~~~--------------------~~~~a~~v~~~lgl~ 101 (317)
T 1hnj_A 46 APNETVSTMGFEAATRAIEMAGIEKDQIG----LIVVATTSATHA--------------------FPSAACQIQSMLGIK 101 (317)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCSCS--------------------SSCHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCC
Confidence 3567899999999999999999988887 789998654321 124789999999998
Q ss_pred -CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 173 -GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 173 -Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+|+++|+++|+|++.||+.|+++|++|+||++||+|+|.+.... .|+.+.+|+++||||++
T Consensus 102 ~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~~------------------~~~d~~~~~~~GdGA~A 163 (317)
T 1hnj_A 102 GCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTC------------------DPTDRGTIIIFGDGAGA 163 (317)
T ss_dssp SSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHHS------------------CTTCHHHHTTBCCEEEE
T ss_pred CCeEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccC------------------CchhcccceeeccccEE
Confidence 89999999999999999999999999999999999999843210 12223458999999999
Q ss_pred EEecchhhhhhCCCceEEEEeee-eeccCCCCC-----------CCCCCCHH--------HHHHHHHHHHHHcCCCCCCc
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGS-AITHNGQSN-----------GLTAPNPI--------QQSYLLQKAWNESNIDVRSL 311 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~-~~~~dg~~~-----------~~~~p~~~--------~~~~~i~~al~~Agl~~~dI 311 (831)
+||++.+. .+|++.+.+. +...+.... ....+++. .+.++|+++|+++|++++||
T Consensus 164 ~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~agl~~~di 238 (317)
T 1hnj_A 164 AVLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQL 238 (317)
T ss_dssp EEEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred EEEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 99998652 4688877552 222221110 11123444 78899999999999999999
Q ss_pred ceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCC
Q psy11395 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLN 391 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~ 391 (831)
|||++|++||++.|. +.+.|+... . .+.++|+++||+.+|++...|..++ +.+.+.
T Consensus 239 d~v~~H~~~~~~~d~-----i~~~lg~~~----------~--~~~~~~~~~Gn~~~As~~~~L~~~~---~~~~~~---- 294 (317)
T 1hnj_A 239 DWLVPHQANLRIISA-----TAKKLGMSM----------D--NVVVTLDRHGNTSAASVPCALDEAV---RDGRIK---- 294 (317)
T ss_dssp CEEEECCSCHHHHHH-----HHHHTTCCG----------G--GBCCCHHHHCBCGGGHHHHHHHHHH---HTTCSC----
T ss_pred CEEEEcCCCHHHHHH-----HHHHcCCCH----------H--HhHhhHhhhCcHHHHHHHHHHHHHH---HhCCCC----
Confidence 999999999988663 556675311 1 2447899999999999999887664 333221
Q ss_pred CCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 392 FYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 392 ~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..+.++.+||.|.+...++|+
T Consensus 295 -------------------------------~G~~vll~~~G~G~t~~~~~l~ 316 (317)
T 1hnj_A 295 -------------------------------PGQLVLLEAFGGGFTWGSALVR 316 (317)
T ss_dssp -------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred -------------------------------CCCEEEEEEEchhheeEEEEEE
Confidence 1246889999999999998885
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=278.87 Aligned_cols=267 Identities=16% Similarity=0.174 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCC
Q psy11395 98 QQRILLELSWKTIED-AGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGP 174 (831)
Q Consensus 98 ~~rl~l~aa~~ALed-AG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gp 174 (831)
.+.|+++++++||+| ||+++++++ +|++|+...++. ....++.++++.+|+ ++|
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~dId----~vi~g~~~~~~~-------------------~~~~~a~~va~~lGlp~~~p 88 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDETLIS----DMILGVVSPVGD-------------------QGGDIARTAVLAAGLPETTG 88 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGGGEE----EEEEECC---------------------------CHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHHHHHHhhhcCcCHHHCC----EEEEEecCcccc-------------------ccCcHHHHHHHHcCCCCCCc
Confidence 567999999999999 999999988 688887543321 012468899999999 679
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccch--------------------hHHHH------------
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSN--------------------TIAYY------------ 222 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~--------------------~~~~~------------ 222 (831)
+++|+++|+|++.||+.|+++|++|+||++||+|+|.+..... .+.+.
T Consensus 89 a~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~a~~~~i~r 168 (407)
T 3svk_A 89 GVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLIATLEGFSR 168 (407)
T ss_dssp EEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHHHHHHTCCH
T ss_pred eEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHHHHHhCcCH
Confidence 9999999999999999999999999999999999998764211 00000
Q ss_pred ------------------HcC----------------CCCCCCCCcc-------------ccCC----------------
Q psy11395 223 ------------------KAG----------------MLSRDGICKT-------------FDKN---------------- 239 (831)
Q Consensus 223 ------------------~~g----------------~ls~~g~~~~-------------Fd~~---------------- 239 (831)
+.| .+.+++.+|+ |+..
T Consensus 169 e~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~~~~~~~~~ 248 (407)
T 3svk_A 169 EDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHW 248 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC-------------CTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCccccccccccccccc
Confidence 001 2455665554 5532
Q ss_pred ----------CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC
Q psy11395 240 ----------ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVR 309 (831)
Q Consensus 240 ----------a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~ 309 (831)
.|...++||++++||++++.|+++|++++++|+|++.++++.....+ +...+++++|+++|++++
T Consensus 249 ~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~~~~~-----~~~~a~~~al~~Agl~~~ 323 (407)
T 3svk_A 249 VEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPVIMLT-----GPTPATRKVLDRAGLTID 323 (407)
T ss_dssp CSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC------CCC-----THHHHHHHHHHHHTCCGG
T ss_pred cccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccCCccccH-----HHHHHHHHHHHHcCCCHH
Confidence 46667999999999999999999999999999999998775443222 346899999999999999
Q ss_pred CcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 310 SLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 310 dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
||||||+|++.|. .|...+ +.|+-. ..++++.+.|..+||+.||+|+..+++++++|+++
T Consensus 324 dId~~e~hdaf~~----~~l~~~-~~lg~~----------~~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~L~~~----- 383 (407)
T 3svk_A 324 DIDLFELNEAFAS----VVLKFQ-KDLNIP----------DEKLNVNGGAIAMGHPLGATGAMITGTMVDELERR----- 383 (407)
T ss_dssp GCSEEEECCSBHH----HHHHHH-HHHTCC----------GGGBSTTCCHHHHCBCGGGHHHHHHHHHHHHHHHH-----
T ss_pred HCCEEEEeChhHH----HHHHHH-HHhCCC----------CCCCCCCCcHhheeCcHHHHHHHHHHHHHHHHHhc-----
Confidence 9999999998884 344333 334321 13567888888899999999999999999999873
Q ss_pred CCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 390 ~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+.++++++..+.||....+|||+
T Consensus 384 ---------------------------------~~~~gl~~~c~ggG~g~a~~~e~ 406 (407)
T 3svk_A 384 ---------------------------------NARRALITLCIGGGMGVATIIER 406 (407)
T ss_dssp ---------------------------------TCCEEEEEEECSSSCEEEEEEEE
T ss_pred ---------------------------------CCCEEEEEeeccCcceEEEEEEc
Confidence 23678999999999999999985
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=278.94 Aligned_cols=295 Identities=15% Similarity=0.159 Sum_probs=211.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|.|+|+|+.+|....+.++||+.+.. + ++|. ..++||..+..
T Consensus 10 ~~~~I~gig~~~P~~~~~~~~~~~~~~~--------~-~~~i---------------------------~~~~Gi~~R~~ 53 (339)
T 1mzj_A 10 RFSRVLGVGSYRPRREVSNKEVCTWIDS--------T-EEWI---------------------------ETRTGIRSRRI 53 (339)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHTTTSSC--------C-HHHH---------------------------HHHHCCSEEEC
T ss_pred CceEEEEEEEeCCCccccHHHHHHHhCC--------C-HHHH---------------------------HHhcCceEEEE
Confidence 4599999999999876778888875421 1 1221 01223433332
Q ss_pred c-cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 93 E-SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 93 ~-~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
. ..++.++|+++++++||+|||+++++++ +|++|+...+|. ....+.+|++.||+
T Consensus 54 ~~~~~~~~~la~~Aa~~al~~ag~~~~~id----~vi~gt~~~~~~--------------------~p~~a~~v~~~lgl 109 (339)
T 1mzj_A 54 AEPDETIQVMGVAASRRALEHAGVDPAEID----LVVVSTMTNFVH--------------------TPPLSVAIAHELGA 109 (339)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCCCC--------------------SSCHHHHHHHHHTC
T ss_pred eCCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCCC--------------------CChHHHHHHHHhCC
Confidence 2 2457899999999999999999988887 799998765431 11268899999999
Q ss_pred C-CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 172 T-GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 172 ~-Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
+ +|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+. +. +. ++.+.+|+++||||+
T Consensus 110 ~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~----------~~-------~~d~~~~~~~GdGA~ 171 (339)
T 1mzj_A 110 DNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMT-DV----------ID-------LADRSLSFLFGDGAG 171 (339)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGG-GG----------SC-------SSCTTTTTTBCEEEE
T ss_pred CCccEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-cc----------cC-------ccccccceEeccCce
Confidence 8 79999999999999999999999999999999999999853 32 11 123467999999999
Q ss_pred EEEecchhhhhhCCCceEEEE-eeeeeccCCCCC-C--------------CCCCCH--------HHHHHHHHHHHHHcCC
Q psy11395 251 MLMLKPLSVALNDHDNIYAII-KGSAITHNGQSN-G--------------LTAPNP--------IQQSYLLQKAWNESNI 306 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I-~g~~~~~dg~~~-~--------------~~~p~~--------~~~~~~i~~al~~Agl 306 (831)
++||++.+. .+|++.. .+.+...+.... + ....++ ..+.++|+++|+++|+
T Consensus 172 A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl 246 (339)
T 1mzj_A 172 AAVVGPSDV-----PGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALEVAGL 246 (339)
T ss_dssp EEEEEEESS-----CCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEecCC-----CCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999997642 3454432 222211111100 0 000122 5788999999999999
Q ss_pred CCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccc-cccccccCCCCcccchhhhHHHHHHHHHHHhcCc
Q psy11395 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYE-KCGLGSVKTNLGHLEAASGITGILKIILCLKNKK 385 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~-~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ 385 (831)
+++|||||++|++||+++|. +.+.|+-.. . ++. .+ ..++||+.+||+...|.+++. .+.
T Consensus 247 ~~~did~v~~H~~~~~~~d~-----i~~~lg~~~----------~~~~~-~~-~~~~Gn~~sAs~~~~L~~~~~---~g~ 306 (339)
T 1mzj_A 247 TVGDLVAFVPHQANLRIIDV-----LVDRLGVPE----------HVVVS-RD-AEDTGNTSSASVALALDRLVR---SGA 306 (339)
T ss_dssp CGGGCSEEEECCSCHHHHHH-----HHHHHTCCT----------TSEEC-CT-HHHHCBCTTHHHHHHHHHHHH---HTS
T ss_pred CHHHCCEEEECCCCHHHHHH-----HHHHhCCCc----------cceee-eh-hhhcCchHHHHHHHHHHHHHH---cCC
Confidence 99999999999999998875 445554210 1 222 23 368999999999998877643 332
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 386 LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 386 ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+. +..++++.+||.|++.++++|+-
T Consensus 307 ~~-----------------------------------~G~~vll~~~G~G~t~~~~~l~~ 331 (339)
T 1mzj_A 307 VP-----------------------------------GGGPALMIGFGAGLSYAGQALLL 331 (339)
T ss_dssp SC-----------------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred CC-----------------------------------CCCEEEEEEEchhheeEEEEEEe
Confidence 21 12468999999999999999974
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=267.32 Aligned_cols=248 Identities=17% Similarity=0.169 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CC
Q psy11395 96 DPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GP 174 (831)
Q Consensus 96 dp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gp 174 (831)
++..+|+++++++||+|||+++++++ +|++|+...+|. ...++.+|+..||++ +|
T Consensus 49 ~~~~~l~~~a~~~al~~ag~~~~~id----~vi~~~~~~~~~--------------------~~~~a~~v~~~lgl~~~~ 104 (313)
T 1zow_A 49 QDTSDLAYEASVKAIADAGIQPEDID----MIIVATATGDMP--------------------FPTVANMLQERLGTGKVA 104 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSSCSCS--------------------SSCHHHHHHHHHTCCSCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CCcHHHHHHHHhCCCCCc
Confidence 45789999999999999999988887 799998755431 013588999999998 69
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEe
Q psy11395 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254 (831)
Q Consensus 175 s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL 254 (831)
+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.... +|||. .+|+++|||++++||
T Consensus 105 ~~~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~-----------------~~~d~-~~~~~~gdGa~A~vl 166 (313)
T 1zow_A 105 SMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKIT-----------------DLTDR-STAVLFGDGAGAVII 166 (313)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGGGTC-----------------CTTCH-HHHTTBCEEEEEEEE
T ss_pred EEEECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEccccccc-----------------Ccccc-cceeeeccceEEEEE
Confidence 999999999999999999999999999999999999853321 34443 369999999999999
Q ss_pred cchhhhhhCCCceEEE-EeeeeeccCCCCCCC----CCCCH--------HHHHHHHHHHHHHcCCCCCCcceEEecCCCC
Q psy11395 255 KPLSVALNDHDNIYAI-IKGSAITHNGQSNGL----TAPNP--------IQQSYLLQKAWNESNIDVRSLGYIECHGTGT 321 (831)
Q Consensus 255 ~~~~~A~~~g~~i~a~-I~g~~~~~dg~~~~~----~~p~~--------~~~~~~i~~al~~Agl~~~dId~ie~HgtGT 321 (831)
++.+. +.+|++. +.+.+...+...... ..+++ ..+.++|+++|+++|++++|||||++|+++|
T Consensus 167 ~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~ 242 (313)
T 1zow_A 167 GEVSE----GRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQANI 242 (313)
T ss_dssp EECST----TCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCH
T ss_pred EecCC----CCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCH
Confidence 98654 3456553 333332222111000 01122 3788899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCC
Q psy11395 322 KLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401 (831)
Q Consensus 322 ~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~ 401 (831)
+..|.+ .+.|+-.. .+++ ..|.++||+.+|++...|.+++. ++.+.
T Consensus 243 ~~~d~~-----~~~lg~~~----------~~~~--~~~~~~Gh~~~as~~~~L~~~~~---~~~~~-------------- 288 (313)
T 1zow_A 243 RIMESA-----RERLGISK----------DKMS--VSVNKYGNTSAASIPLSIDQELK---NGKLK-------------- 288 (313)
T ss_dssp HHHHHH-----HHHHTCCG----------GGBC--CCHHHHCBCGGGHHHHHHHHHHH---TTCCC--------------
T ss_pred HHHHHH-----HHHhCCCH----------HHHH--HhHhhhCchHHHHHHHHHHHHHH---cCCCC--------------
Confidence 988764 34554211 1232 35889999999999999877643 33210
Q ss_pred CCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 402 ~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..++++.+||.|++.+.++|+
T Consensus 289 ---------------------~g~~vl~~~~G~G~t~~~~~l~ 310 (313)
T 1zow_A 289 ---------------------DDDTIVLVGFGGGLTWGAMTIK 310 (313)
T ss_dssp ---------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ---------------------CCCEEEEEEEchhhhheEEEEE
Confidence 1246899999999999999986
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=258.42 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=209.5
Q ss_pred CEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhc
Q psy11395 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAE 93 (831)
Q Consensus 14 ~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~ 93 (831)
.+.|+|+|+.+|....+.++||+.+.. + ++|.. ..+||..+...
T Consensus 5 ~~~I~g~g~~~P~~~~~~~~~~~~~~~--------~-~~~i~---------------------------~~~Gi~~R~~~ 48 (331)
T 2x3e_A 5 AAVVCGLGSYLPEAVLSNDMLAAELDT--------S-DAWIS---------------------------SRTGVRQRHIA 48 (331)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHTTC--------C-HHHHH---------------------------HHHCCCEEECC
T ss_pred eeEEEEEEEECCCcEecHHHHHHHhCC--------C-HHHHH---------------------------HhhCceEEEec
Confidence 589999999999876788889887531 1 12210 11233333322
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT- 172 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~- 172 (831)
..++..+|+++++++||+|||+ ++++ +|++|+...++. ....+.+|+..||++
T Consensus 49 ~~~~~~~la~~Aa~~al~~ag~--~~id----~vi~~t~~~~~~--------------------~p~~a~~v~~~lgl~~ 102 (331)
T 2x3e_A 49 GDLGSGDLALRAASAALASAGL--ERVD----AVVLATSTGDFC--------------------CPATAPRVAARLGLVG 102 (331)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC--SCCS----EEEEECSSCSEE--------------------ESCSHHHHHHHTTCTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCc--ccCC----EEEEEeCCCCCC--------------------CChHHHHHHHHhCCCC
Confidence 2267899999999999999999 5554 688887654331 012578999999998
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEE
Q psy11395 173 GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252 (831)
Q Consensus 173 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaav 252 (831)
+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+. +.. . ++...+|+++||||+++
T Consensus 103 ~~~~~v~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~~s-~~~----------~-------~~d~~~~~~~GdGA~A~ 164 (331)
T 2x3e_A 103 ALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTFS-HTL----------D-------PADRSTRALFGDGAGAV 164 (331)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GGS----------C-------TTCHHHHHHBCCEEEEE
T ss_pred CcEEEEcCcChHHHHHHHHHHHHHHcCCCCEEEEEEeeccc-cCC----------C-------ccccccceeeccccEEE
Confidence 89999999999999999999999999999999999999853 321 1 12234689999999999
Q ss_pred EecchhhhhhCCCceEEEEeeeeeccCCCCC-CCCCC------------------CH--------HHHHHHHHHHHHHcC
Q psy11395 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQSN-GLTAP------------------NP--------IQQSYLLQKAWNESN 305 (831)
Q Consensus 253 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-~~~~p------------------~~--------~~~~~~i~~al~~Ag 305 (831)
||++.+.| ++.+|++.. ..++|... .++.| ++ ..+.++++++|+++|
T Consensus 165 vL~~~~~a--~~~~i~~~~----~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~ag 238 (331)
T 2x3e_A 165 VLRAGDAE--EEGALLAFD----LGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVG 238 (331)
T ss_dssp EEEEECTT--STTBEEEEE----EEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCC--CCCceEEEE----EEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99987655 445665543 33343211 12222 22 577889999999999
Q ss_pred CCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCc
Q psy11395 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKK 385 (831)
Q Consensus 306 l~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ 385 (831)
++++|||||.+|+++|++.|. +.+.|+-.. .+++. .+.++||+.+|+....|..++ +++.
T Consensus 239 l~~~did~~~~H~~~~~~~d~-----~~~~lg~~~----------~~~~~--~~~~~Gnt~sAs~~~~L~~~~---~~~~ 298 (331)
T 2x3e_A 239 WQASDLHHLVPHQANTRILAA-----VADQLDLPV----------ERVVS--NIAEVGNTVAASIPLALAHGL---RQGI 298 (331)
T ss_dssp CCGGGCSEEEECCCCHHHHHH-----HHHHHTCCG----------GGBCC--CHHHHCBCGGGHHHHHHHHHH---HTTC
T ss_pred CCHHHCCEEEEcCCCHHHHHH-----HHHHcCCCH----------HHHhh--hHhhhCcHHHHHHHHHHHHHH---HhCC
Confidence 999999999999999998775 444554211 12322 346899999999988776553 3332
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 386 LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 386 ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+. +..++++.+||.|.+...++|+-
T Consensus 299 ~~-----------------------------------~G~~vll~~~G~G~~~~~~~l~~ 323 (331)
T 2x3e_A 299 LR-----------------------------------DGGNMVLTGFGAGLTWGSVALRW 323 (331)
T ss_dssp SC-----------------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred CC-----------------------------------CCCEEEEEEEeHHhhheeeEEEE
Confidence 21 12468999999999999999964
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=261.12 Aligned_cols=296 Identities=13% Similarity=0.186 Sum_probs=207.4
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
.++.|+|+|+.+|....+.++||+.+.. .++|. ..++||..+..
T Consensus 11 ~~~~I~g~g~~~P~~~~~~~~~~~~~~~---------~~~~i---------------------------~~~~gi~~r~~ 54 (335)
T 1u6e_A 11 RSVGLLSVGAYRPERVVTNDEICQHIDS---------SDEWI---------------------------YTRTGIKTRRF 54 (335)
T ss_dssp SCEEEEEEEEECCSEEEEHHHHTTSSSC---------CHHHH---------------------------HHHHCCSEEEE
T ss_pred CceEEEEEEEECCCceecHHHHHHHhCC---------CHHHH---------------------------HHhcCCceEee
Confidence 3589999999999876677888874421 11220 11234444433
Q ss_pred cc-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 93 ES-MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 93 ~~-mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
.. .++..+|+++++++||+|||+++++++ +|++|+...+|. ...++.+|+..||+
T Consensus 55 ~~~~~~~~~la~~A~~~al~~ag~~~~~id----~vi~~t~~~~~~--------------------~~~~a~~v~~~lgl 110 (335)
T 1u6e_A 55 AADDESAASMATEACRRALSNAGLSAADID----GVIVTTNTHFLQ--------------------TPPAAPMVAASLGA 110 (335)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCCCS--------------------SSCHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEcCCCCCC--------------------CChHHHHHHHHhCC
Confidence 32 467899999999999999999988887 799998765441 11368899999999
Q ss_pred C-CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceE
Q psy11395 172 T-GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250 (831)
Q Consensus 172 ~-Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaa 250 (831)
+ +|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.. ..+++| ..+++++||||+
T Consensus 111 ~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s~-----------------~~~~~d-~~~~~~~gDGA~ 172 (335)
T 1u6e_A 111 KGILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSP-----------------TIDMYD-RGNCFIFADGAA 172 (335)
T ss_dssp TTSEEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECGG-----------------GCCTTC-TTTTTTBCEEEE
T ss_pred CCCcEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEccccc-----------------ccCccc-cccceEeccccE
Confidence 8 599999999999999999999999999999999999998532 123444 358999999999
Q ss_pred EEEecchhhhhhCCCceEEEEeee-eeccCCCCC---------------CCCCCC--------HHHHHHHHHHHHHHcCC
Q psy11395 251 MLMLKPLSVALNDHDNIYAIIKGS-AITHNGQSN---------------GLTAPN--------PIQQSYLLQKAWNESNI 306 (831)
Q Consensus 251 avvL~~~~~A~~~g~~i~a~I~g~-~~~~dg~~~---------------~~~~p~--------~~~~~~~i~~al~~Agl 306 (831)
++||++.+. ++ ++.++.+. +...+.... .....+ ...+.++++++|+++|+
T Consensus 173 A~vl~~~~~---~~--i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl 247 (335)
T 1u6e_A 173 AVVVGETPF---QG--IGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGV 247 (335)
T ss_dssp EEEEEECSS---CC--BCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCC---CC--eeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999997653 22 44444332 111110000 001111 24678899999999999
Q ss_pred CCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCcc
Q psy11395 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~i 386 (831)
+++|||||++|+++|+..|.+ .+.|+-... .++. ..+.++||+.+|+....|..+ ++.+.+
T Consensus 248 ~~~dId~~~~H~~~~~~~~~~-----~~~lg~~~~---------~~~~--~~~~~~Gnt~sAs~~~~L~~~---~~~~~~ 308 (335)
T 1u6e_A 248 RPDQIDVFVPHQANSRINELL-----VKNLQLRPD---------AVVA--NDIEHTGNTSAASIPLAMAEL---LTTGAA 308 (335)
T ss_dssp CGGGCCEEEECCSCHHHHHHH-----HHHHTCCTT---------CEEC--CTHHHHCBCGGGHHHHHHHHH---HHHTSS
T ss_pred CHHHCCEEEECCCCHHHHHHH-----HHHcCCCch---------hhhh--hhhhhhCcHHHHHHHHHHHHH---HHcCCC
Confidence 999999999999999887764 344542110 1222 225778999999965433322 122110
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 387 pp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
....++++++||+|++++.+||+-
T Consensus 309 -----------------------------------~~g~~~l~~~~G~G~t~~~~vl~~ 332 (335)
T 1u6e_A 309 -----------------------------------KPGDLALLIGYGAGLSYAAQVVRM 332 (335)
T ss_dssp -----------------------------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -----------------------------------CCCCEEEEEEEehhheeEEEEEEe
Confidence 122579999999999999999974
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-27 Score=264.17 Aligned_cols=321 Identities=11% Similarity=0.099 Sum_probs=225.7
Q ss_pred EEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhcc
Q psy11395 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAES 94 (831)
Q Consensus 15 IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~ 94 (831)
+.|+|+|+.+|....+.++||+.+.... .+.|.++|.. .+ ....++..-.+..+.+.|+ .+|++++++...
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~---~~~~~~~~~~--~i---~~~~GI~~R~~~~~~~~~~-~~~~~~~r~~~~ 80 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRH---TDHPQLPLAL--RL---IENTGVRTRHIVQPIEDTL-EHPGFEDRNKVY 80 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHH---TTCTTHHHHH--HH---HHHTCCCEEEESSCHHHHT-SCCCHHHHHHHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhc---cChhhHHHHH--HH---HHhcCCCcceeecChhhhc-cCCChhHHHHHH
Confidence 7999999999987778899999876432 2333222210 00 0111222222333445565 678899999888
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG- 173 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G- 173 (831)
.++..+|+++++++||+|||+++++++ +|++++... | . ....+.+|+..||+++
T Consensus 81 ~~~~~~la~~Aa~~aL~~agl~~~~id----~vi~~t~~~-~---------------~-----~p~~a~~v~~~lGl~~~ 135 (382)
T 1u0m_A 81 EREAKSRVPAVIQRALDDAELLATDID----VIIYVSCTG-F---------------M-----MPSLTAWLINEMGFDST 135 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCS----EEEEECSSS-C---------------C-----SSCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHCC----EEEEEecCC-C---------------C-----CCcHHHHHHHHhCCCCC
Confidence 899999999999999999999988887 577776532 2 0 1236789999999998
Q ss_pred -Ccccc-ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCC----cceecC
Q psy11395 174 -PSLLI-DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNAD----GYVRGE 247 (831)
Q Consensus 174 -ps~tv-~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~----G~v~gE 247 (831)
|+++| +++|+|++.||+.|+++|++|.+|.+||+|+|.+. +. .+++|.+.+ |+++||
T Consensus 136 ~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~s-~~----------------~~~~d~~~~~~~~~~lfGD 198 (382)
T 1u0m_A 136 TRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS-LC----------------YQPTDLGVGSLLCNGLFGD 198 (382)
T ss_dssp CEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGG-GG----------------CCTTCCSHHHHHHHHHBCE
T ss_pred cceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEeccc-hh----------------cCcccCCHHHhhccchhcC
Confidence 89999 99999999999999999999999999999999853 21 134554333 899999
Q ss_pred ceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCC--------------CCCCC--CHHHHHHHHHHHHHHcCCCCCCc
Q psy11395 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN--------------GLTAP--NPIQQSYLLQKAWNESNIDVRSL 311 (831)
Q Consensus 248 GaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~--------------~~~~p--~~~~~~~~i~~al~~Agl~~~dI 311 (831)
||+++||++.+. +|..|++...+ ...++... +...| ....+. +|+++|+++|++++||
T Consensus 199 GA~A~vL~~~~~---~g~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~-~i~~aL~~agl~~~dI 272 (382)
T 1u0m_A 199 GIAAAVVRGRGG---TGVRLERNGSY--LIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAP-ALKELAGEHGWDASDL 272 (382)
T ss_dssp EEEEEEEETTTC---SEEEEEEEEEE--ECSSCTTTEEEEEETTEEEEEECTTTGGGHHHHHH-HHHHHHHTTSCCSSCC
T ss_pred CcEEEEEeccCC---CCcEEEEeeeE--ecCChHHhcCceecCCceEEEeCcHHHHHHHHHHH-HHHHHHHHcCCCHHHC
Confidence 999999987643 34334333221 13333210 01112 246677 9999999999999999
Q ss_pred ceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccc-cccCCCCcccchhhhHHHHHHHHHHHhcCccCCCC
Q psy11395 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL-GSVKTNLGHLEAASGITGILKIILCLKNKKLPASL 390 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~v-gs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~ 390 (831)
|||++|++++++.|.+ .+.++-.. .++.+ .+.+..+||+.+|+....|..++. .+.+.
T Consensus 273 d~v~~H~~~~~i~d~~-----~~~lgl~~----------~k~~~s~~~~~~~Gnt~sAsi~~~L~~~~~---~g~~~--- 331 (382)
T 1u0m_A 273 DFYIVHAGGPRILDDL-----STFLEVDP----------HAFRFSRATLTEYGNIASAVVLDALRRLFD---EGGVE--- 331 (382)
T ss_dssp SCCEEECSHHHHHHHH-----HHHSCSCG----------GGGHHHHHHHHHTCBCTTHHHHHHHHHHHH---SCCCC---
T ss_pred CEEEECCCCHHHHHHH-----HHHcCCCH----------HHHHHHHHHHHHhCCchhhHHHHHHHHHHH---hcCCC---
Confidence 9999999999887654 34443210 22332 246678999999998888766653 33211
Q ss_pred CCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 391 ~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
...++++.+||.|.+...++|+-
T Consensus 332 --------------------------------~Gd~vll~~~G~G~t~~~~vl~~ 354 (382)
T 1u0m_A 332 --------------------------------EGARGLLAGFGPGITAEMSLGCW 354 (382)
T ss_dssp --------------------------------SSCCCEEEEEETTTEEEEEEEEE
T ss_pred --------------------------------CCCEEEEEEEcccceeEEEEEEE
Confidence 11347888999999999999964
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-27 Score=262.71 Aligned_cols=325 Identities=12% Similarity=0.109 Sum_probs=225.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccc-cCcccCCCCCCCCChhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL-KDIECFDAPFFKISPIE 91 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l-~~~~~FD~~~f~i~~~e 91 (831)
+.|.|+|+|+.+|....+.++||+.+....+ .+.+..+|... .- ...++..-.+. ++ ..||+.||++++.+
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~--i~---~~~Gi~~R~~~~~~-~~~~~~~~~~~~~~ 83 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFS--DKAETNEKVKR--IF---EQSQIKTRHLVRDY-TKPENSIKFRHLET 83 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSC--SCHHHHHHHHH--HH---HTTCCCEECCSSCT-TSGGGCGGGGGGCC
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhc--cChHHHHHHHH--HH---HhCCcCcceeecCc-cccccccccCChHH
Confidence 3599999999999877788999998864321 11111222100 00 01111111111 22 35899999999988
Q ss_pred hccC-----CHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 92 AESM-----DPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 92 a~~m-----dp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
...+ ++..+|+++++++||++||+++++++ +|++|+... + . ....+.+|+
T Consensus 84 ~~~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id----~vi~~t~~~-~---------------~-----~p~~a~~v~ 138 (374)
T 2h84_A 84 ITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDIT----HIVSVTSTG-I---------------I-----IPDVNFKLI 138 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC----EEEEEESSC-C---------------C-----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeeCC-C---------------C-----CCcHHHHHH
Confidence 8888 88999999999999999999998887 688887642 1 0 113688999
Q ss_pred HHcCCCC--Cccccc-cccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCC--CC
Q psy11395 167 YFYNFTG--PSLLID-TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKN--AD 241 (831)
Q Consensus 167 ~~lgl~G--ps~tv~-taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~--a~ 241 (831)
..||+++ |++.|. ++|+|++.||+.|+++|++|.++.+||+|+|.+.... . .+.|.+ .+
T Consensus 139 ~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~-~---------------~~~dr~~~~~ 202 (374)
T 2h84_A 139 DLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHF-S---------------NTDGGDQMVA 202 (374)
T ss_dssp HHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCGGGC-C---------------CSSSHHHHHH
T ss_pred HHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecchhh-c---------------CCCCHHHHhh
Confidence 9999998 899996 8999999999999999999999999999999853211 0 112221 24
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeec--cCCCC--------CC------CCCCC--HHHHHHHHHHHHHH
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT--HNGQS--------NG------LTAPN--PIQQSYLLQKAWNE 303 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~--~dg~~--------~~------~~~p~--~~~~~~~i~~al~~ 303 (831)
++++||||+++||++.+.+..+ .++ +|.+.+.. .++.. .+ ...|. ...+.++++++|++
T Consensus 203 ~~lfGDGA~A~vL~~~~~~~~~--~~~-~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~ 279 (374)
T 2h84_A 203 SSIFADGSAAYIIGCNPRIEET--PLY-EVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDK 279 (374)
T ss_dssp HHHBCCEEEEEEEESSCCTTCC--CCE-EEEEEEEEECSSCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCcEEEEEecCCCcccC--Cce-eEEeeeeEEeCCCcccceeEEecCcEEEEeCchHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999987765422 345 56665432 11110 00 11121 35678899999999
Q ss_pred cC------CCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHH
Q psy11395 304 SN------IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 304 Ag------l~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik 376 (831)
+| ++++||||| +|++++++.|.++ +.++-.. .++.++ .+...+||+.+|+-...|..
T Consensus 280 ag~~~~~~l~~~did~~-~H~~~~~i~d~~~-----~~lgl~~----------~k~~~s~~~~~~~Gnt~sasi~~~L~~ 343 (374)
T 2h84_A 280 AKLQTSTAISAKDCEFL-IHTGGKSILMNIE-----NSLGIDP----------KQTKNTWDVYHAYGNMSSASVIFVMDH 343 (374)
T ss_dssp HTTTSCSCCCSSSSEEE-ECCCCHHHHHHHH-----HHTTCCG----------GGGHHHHHHHHHHCBCTTHHHHHHHHH
T ss_pred cCCccccCCChhhcCEe-ECCCCHHHHHHHH-----HHcCCCH----------HHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 99 999999999 9999998876544 3443210 233332 44566899999988777766
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++ +.+. ...++++.+||.|-+-+.++|+.
T Consensus 344 ~~---~~~~-------------------------------------~Gd~vll~~~G~G~t~~~~ll~~ 372 (374)
T 2h84_A 344 AR---KSKS-------------------------------------LPTYSISLAFGPGLAFEGCFLKN 372 (374)
T ss_dssp HH---TCSC-------------------------------------CCSEEEEEEEETTTEEEEEEEEE
T ss_pred HH---hhcC-------------------------------------CCCeEEEEEeccchhhhhhhhee
Confidence 54 2221 01357888999999988888864
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-22 Score=216.12 Aligned_cols=303 Identities=19% Similarity=0.217 Sum_probs=201.1
Q ss_pred cccCCCCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCC
Q psy11395 5 NNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPF 84 (831)
Q Consensus 5 ~~~~~~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~ 84 (831)
+.+|......|.|+|+|+.+|....+.+++|+.+.+.. + ..+ +.|.. ..
T Consensus 2 ~~~~~~~~m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~--~-~~~-~~~i~---------------------------~r 50 (333)
T 4dfe_A 2 PGSMAQSTIYSRVLGTGSYLPPNRVTNQDLAKRLAEQG--I-ETS-DEWIV---------------------------AR 50 (333)
T ss_dssp -------CCEEEEEEEEEECCSEEEEHHHHHHHHC-----C-CCC-HHHHH---------------------------HH
T ss_pred CccccccccceEEEEEEEECCCcEEcHHHHHHHhcccc--C-CCC-HHHhH---------------------------Hh
Confidence 34555544589999999999987778999999875411 1 011 11210 00
Q ss_pred CCCChhhhc-cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHH
Q psy11395 85 FKISPIEAE-SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLAN 163 (831)
Q Consensus 85 f~i~~~ea~-~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ 163 (831)
+||..+... .-.+...|+.+++++||++||+++++++ .|++|+...++. ....+.
T Consensus 51 tgi~~r~~~~~~~~~~~la~~Aa~~al~~ag~~~~~Id----~vi~~t~~~~~~--------------------~p~~a~ 106 (333)
T 4dfe_A 51 TGIHARYFAEPDVTTSDLAFIASQRAIEAADIDPQSID----LIIVATSTPDFV--------------------FPSTAC 106 (333)
T ss_dssp HCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSSCSSS--------------------BSCHHH
T ss_pred cCceEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CCcHHH
Confidence 011111100 0134788999999999999999999987 689988765441 123688
Q ss_pred HHHHHcCC--CCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCC
Q psy11395 164 RISYFYNF--TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNAD 241 (831)
Q Consensus 164 ris~~lgl--~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~ 241 (831)
+|+..||+ ++|++.|+++|+|++.||+.|+++|++|.++.+||+|+|.+.... .|+.+..
T Consensus 107 ~v~~~lgl~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~------------------~~~d~~~ 168 (333)
T 4dfe_A 107 LLQNKLGIRNHGAAFDVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRIL------------------DFKDRTT 168 (333)
T ss_dssp HHHHHTTCCSCCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC------------------CTTCTTT
T ss_pred HHHHHhCCCCCCcEEEeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeecccccc------------------Ccccccc
Confidence 99999999 679999999999999999999999999999999999999864321 1223346
Q ss_pred cceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCC-CCCCC----------------C--------HHHHHHH
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN-GLTAP----------------N--------PIQQSYL 296 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-~~~~p----------------~--------~~~~~~~ 296 (831)
++++||||+|+||++.+ +..+.. +...++|... .+..| + ...+.++
T Consensus 169 ~~lfGDGA~A~vl~~~~-----~~~i~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 239 (333)
T 4dfe_A 169 CVLFGDGAGAVILQASD-----EPGVLA----SALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKV 239 (333)
T ss_dssp TTTBCEEEEEEEEEEES-----SCSEEE----EEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHH
T ss_pred eeeeccccEEEEEEEcC-----CCCeEE----EEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHH
Confidence 78899999999999754 223332 2222332210 01001 1 2567789
Q ss_pred HHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHH
Q psy11395 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 297 i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik 376 (831)
++++|+++|++++||||+..|-.+.++- +++.+.++-.. .++.. ....+||+.+|+=...|..
T Consensus 240 i~~~l~~~gl~~~did~~~~Hq~~~~i~-----~~~~~~lgl~~----------~~~~~--~l~~~GNt~sasi~~~L~~ 302 (333)
T 4dfe_A 240 AVEALEKANLSAEQIDWLIPHQANIRIM-----QSTCRKLGLPQ----------ERMIV--TVGEHGNTSAASIPLALDV 302 (333)
T ss_dssp HHHHHHHTTCCGGGCSEEEECCSCHHHH-----HHHHHHTTCCG----------GGBCC--CHHHHCBCGGGHHHHHHHH
T ss_pred HHHHHHHcCCCHHHCCEEEEcCCCHHHH-----HHHHHHhCCCH----------HHhhh--hHHhcCchHHHHHHHHHHH
Confidence 9999999999999999999998777543 34444443210 12222 3346799999987666655
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
++ +.+.+. +..+.++.+||.|-+-..++|+
T Consensus 303 ~~---~~g~~~-----------------------------------~Gd~vll~~~G~G~t~~~~ll~ 332 (333)
T 4dfe_A 303 AV---RDGRIK-----------------------------------RGQNVLIEGVGGGFTWGASVIR 332 (333)
T ss_dssp HH---HTTCSC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HH---HcCCCC-----------------------------------CCCEEEEEEEchhheeEEEEEE
Confidence 43 333221 1235788889999999999885
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=214.84 Aligned_cols=316 Identities=16% Similarity=0.076 Sum_probs=213.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
..|.|+|+|+.+|.-.-+.+++++.+..-.... ..+ +.|.. +..||..+..
T Consensus 11 ~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~-~~~-~~~i~---------------------------~~tGi~~R~~ 61 (345)
T 3s21_A 11 QNVSIAGLAHIDAPHTLTSKEINERLQPTYDRL-GIK-TDVLG---------------------------DVAGIHARRL 61 (345)
T ss_dssp SSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHH-TCC-CCHHH---------------------------HTTCCSEEEE
T ss_pred cceEEEEEEEeCCCcEEcHHHHHHHHhhccccc-CCC-HHHHH---------------------------HhhCceeEEE
Confidence 569999999999987678888888763200000 001 11200 0112222211
Q ss_pred ccC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 93 ESM-DPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 93 ~~m-dp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
..- .....|+.+++++||++||+++++++ .|++|+...++. ....+.+|+..||+
T Consensus 62 ~~~~~~~~~La~~Aa~~al~~ag~~~~~Id----~vi~~t~~~~~~--------------------~p~~a~~v~~~lGl 117 (345)
T 3s21_A 62 WDQDVQASDAATQAARKALIDANIGIEKIG----LLINTSVSRDYL--------------------EPSTASIVSGNLGV 117 (345)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEECCSCCSCS--------------------SSCHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CChHHHHHHHHhCC
Confidence 111 13578999999999999999999988 688887654431 12468899999999
Q ss_pred C--CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCce
Q psy11395 172 T--GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGA 249 (831)
Q Consensus 172 ~--Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGa 249 (831)
+ +|++.|+++|+|++.||+.|+++|++|.++.+||+|+|.+... ..+...+++++++.|++||...+++++||||
T Consensus 118 ~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~---~~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA 194 (345)
T 3s21_A 118 SDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLV---YEKTLERMTSPDVTEEEFRNELAALTLGCGA 194 (345)
T ss_dssp CTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHH---HHHHHHHHTCTTCCHHHHHHHHGGGGBCCEE
T ss_pred CCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchh---hccccccccCCccchhhhhhhccceeeccce
Confidence 5 7999999999999999999999999999999999999997543 2223334566677899999999999999999
Q ss_pred EEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCC-------C--------HHHHHHHHHHHHHHcCCCCCCcceE
Q psy11395 250 VMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP-------N--------PIQQSYLLQKAWNESNIDVRSLGYI 314 (831)
Q Consensus 250 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p-------~--------~~~~~~~i~~al~~Agl~~~dId~i 314 (831)
+++||++.+.. ..+.. |.+....+++.......+ + .....++++++|+++|++++||||+
T Consensus 195 ~A~vl~~~~~~-~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~ 269 (345)
T 3s21_A 195 AAMVMARSELV-PDAPR----YKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQF 269 (345)
T ss_dssp EEEEEEEGGGS-TTSCE----EEEEEEEECGGGTTC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCGGGCSEE
T ss_pred eEEEEecCCCC-CCCcc----eeeeccccCcchhhhccccCcceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 99999986532 11233 444444444322211111 1 1234577899999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCC
Q psy11395 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394 (831)
Q Consensus 315 e~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~ 394 (831)
..|-.+..+- +++.+.++-.. .++. ..-..+||+.+|+-...|..++. .+.+.
T Consensus 270 v~Hq~~~~i~-----~~~~~~lgl~~----------ek~~--~~l~~~GNt~sasi~~~L~~~~~---~g~~~------- 322 (345)
T 3s21_A 270 VIHQVSRPHT-----AAFVKSFGIDP----------AKVM--TIFGEHGNIGPASVPIVLSKLKE---LGRLK------- 322 (345)
T ss_dssp EECCSCHHHH-----HHHHHHHTCCG----------GGBC--CCHHHHCBCGGGHHHHHHHHHHH---HTCCC-------
T ss_pred EeCCCCHHHH-----HHHHHHcCcCH----------HHce--eeHhhcCchHHHHHHHHHHHHHH---cCCCC-------
Confidence 9998776542 33444443210 1122 12235799999998877766543 33221
Q ss_pred CCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 395 ~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..+.+..+||.|-+-..++|+
T Consensus 323 ----------------------------~Gd~vll~~~G~G~t~~~~~l~ 344 (345)
T 3s21_A 323 ----------------------------KGDRIALLGIGSGLNCSMAEVV 344 (345)
T ss_dssp ----------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ----------------------------CCCEEEEEEEChhhhheEEEEE
Confidence 1135888899999999888885
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-21 Score=240.19 Aligned_cols=277 Identities=13% Similarity=0.113 Sum_probs=195.2
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHH
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
.+..++.+.++....|+++|+++||+|||+++++++ .|+++++. ++ .....+.+|
T Consensus 677 ~~~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId----~ii~~t~~-~~--------------------~~p~~a~~v 731 (979)
T 3tsy_A 677 SLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKIT----HLVFCTTS-GV--------------------EMPGADYKL 731 (979)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC----EEEEEESS-CC--------------------CSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCC----EEEEEeeC-CC--------------------CCCcHHHHH
Confidence 355666666777888999999999999999998887 47777632 11 112578899
Q ss_pred HHHcCCCCCc---cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCc
Q psy11395 166 SYFYNFTGPS---LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG 242 (831)
Q Consensus 166 s~~lgl~Gps---~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G 242 (831)
+..||++++. +.+++||+|++.||..|+++|++|.++.|||+|+|.+.... .+.....++...++
T Consensus 732 ~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~------------~~~~~~~~~~~~~~ 799 (979)
T 3tsy_A 732 ANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTF------------RGPSEDALDSLVGQ 799 (979)
T ss_dssp HHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTC------------CCCCSSCHHHHHHH
T ss_pred HHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhe------------eCCCccCHHHHhhh
Confidence 9999999755 99999999999999999999999999999999999742211 01112223333456
Q ss_pred ceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCC-----------C-----CHHHHHHHHHHHHHHcCC
Q psy11395 243 YVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTA-----------P-----NPIQQSYLLQKAWNESNI 306 (831)
Q Consensus 243 ~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~-----------p-----~~~~~~~~i~~al~~Agl 306 (831)
+++||||||+||++.+.+...+..++....+.....+........ + ......++++++|+++|+
T Consensus 800 ~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~al~~agl 879 (979)
T 3tsy_A 800 ALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGI 879 (979)
T ss_dssp HHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGGTC
T ss_pred hhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 889999999999988877667778888777776554432211000 0 023467899999999999
Q ss_pred CCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHHHHHhcCc
Q psy11395 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKIILCLKNKK 385 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~l~L~~~~ 385 (831)
+++||||+++|.+++++.|.+|. .++-.. .++... ..-..+||+.+||=...|..+...++.|-
T Consensus 880 ~~~did~~~~Hq~~~~i~~~~~~-----~lgl~~----------~k~~~~~~~l~~~GNtssasi~~~L~~~~~~~~~G~ 944 (979)
T 3tsy_A 880 SDWNSLFWIAHPGGPAILDAVEA-----KLNLDK----------KKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGE 944 (979)
T ss_dssp CCGGGSEEEECCSCHHHHHHHHH-----HHTCCT----------TTTHHHHHHHHHHCBCTTHHHHHHHHHHHHHHHHTT
T ss_pred CCcccceEEECCCChHHHHHHHH-----HcCCCh----------HHHHHHHHHHHHcCCcchhhHHHHHHHHHhhhcccc
Confidence 99999999999999887665543 232100 111111 11234699999998888877655444331
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 386 LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 386 ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
. +.. ..+....+..+||.|-+-+.++|+-
T Consensus 945 ~------------v~~-------------------g~~~~~~ll~~~G~G~t~~~~~l~~ 973 (979)
T 3tsy_A 945 R------------ATT-------------------GEGLDWGVLFGFGPGLTIETVVLHS 973 (979)
T ss_dssp C------------SBT-------------------TTTCSEEEEEEECGGGEEEEEEEEC
T ss_pred c------------ccC-------------------CCCcceeEEEEeCCchHHHHHHHHh
Confidence 1 000 0123457889999999999999874
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=212.09 Aligned_cols=254 Identities=13% Similarity=0.168 Sum_probs=182.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCC-
Q psy11395 96 DPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGP- 174 (831)
Q Consensus 96 dp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gp- 174 (831)
.....|+.+++++||++||+++++++ .|++|+... + . ...++.+|+..||++++
T Consensus 111 ~~~~~la~~Aa~~aL~~agl~~~~Id----~vi~~t~~~-~---------------~-----~p~~a~~v~~~lGl~~~~ 165 (393)
T 1ted_A 111 EHAVPLAVDVSKRALAGLPYRAAEIG----LLVLATSTG-F---------------I-----APGVDVAIVKELGLSPSI 165 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEE----EEEEEESSC-C---------------C-----SSCHHHHHHHHHTCCTTC
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEEeCC-C---------------c-----cChHHHHHHHHcCcCCCc
Confidence 35678999999999999999988776 577776543 2 0 12367899999999985
Q ss_pred -cccc-ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCC----cceecCc
Q psy11395 175 -SLLI-DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNAD----GYVRGEG 248 (831)
Q Consensus 175 -s~tv-~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~----G~v~gEG 248 (831)
++.+ +++|+|++.||..|+++|++|.+|.+||+|+|.+.... -|+.+.+ ++++|||
T Consensus 166 ~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s~~~------------------~~~~~r~~~~~~~lfGDG 227 (393)
T 1ted_A 166 SRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNA------------------VFADDINDVVIHSLFGDG 227 (393)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGC------------------CCCSSHHHHHHHHHBCEE
T ss_pred ceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccC------------------CCCCCHHHhhhhhhhcCc
Confidence 5777 99999999999999999999999999999999854211 0334444 8999999
Q ss_pred eEEEEecchhhhhhCCCceEEEEeeeeec--cCCCCC--------------CCCCC--CHHHHHHHHHHHHHHcCCCCCC
Q psy11395 249 AVMLMLKPLSVALNDHDNIYAIIKGSAIT--HNGQSN--------------GLTAP--NPIQQSYLLQKAWNESNIDVRS 310 (831)
Q Consensus 249 aaavvL~~~~~A~~~g~~i~a~I~g~~~~--~dg~~~--------------~~~~p--~~~~~~~~i~~al~~Agl~~~d 310 (831)
|+++||++.+.+..++. .++.|.+++.. .|+... +...| ....+.++|+++|+++|++++|
T Consensus 228 A~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~aL~~agl~~~d 306 (393)
T 1ted_A 228 CAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISD 306 (393)
T ss_dssp EEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred cEEEEEecCCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 99999998765533343 56677776443 555321 11112 2356788999999999999999
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccc-cccCCCCcccchhhhHHHHHHHHHHHhcCccCCC
Q psy11395 311 LGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL-GSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389 (831)
Q Consensus 311 Id~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~v-gs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~ 389 (831)
||||..|++++++.|.+|. .++-.. .++.+ ......+||+.+|+-...|..++ +.+.+.
T Consensus 307 Id~~~~H~~~~~i~d~~~~-----~lgl~~----------~k~~~s~~~~~~~GNt~sAsi~~~L~~~~---~~g~~~-- 366 (393)
T 1ted_A 307 IDLWAIHPGGPKIIEQSVR-----SLGISA----------ELAAQSWDVLARFGNMLSVSLIFVLETMV---QQAESA-- 366 (393)
T ss_dssp CSCEEECCSCHHHHHHHHH-----HHTCCG----------GGGHHHHHHHHHHCBCTHHHHHHHHHHHH---HSCSSS--
T ss_pred CCEEEECCCcHHHHHHHHH-----HcCCCH----------HHHHHHHHHHHhhCCchHhHHHHHHHHHH---hcCccC--
Confidence 9999999999988776543 333110 12222 13455689999998766554443 332210
Q ss_pred CCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 390 ~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+...++++.+||.|.+.+.++|+-
T Consensus 367 --------------------------------~~Gd~vll~~~G~G~t~~~~~l~~ 390 (393)
T 1ted_A 367 --------------------------------KAISTGVAFAFGPGVTVEGMLFDI 390 (393)
T ss_dssp --------------------------------SSSEEEEEEEEETTTEEEEEEEEE
T ss_pred --------------------------------CCCCeEEEEEeccchhhhhhheee
Confidence 012468999999999999999874
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=186.80 Aligned_cols=336 Identities=14% Similarity=0.134 Sum_probs=215.4
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCC-C-ceeeCC-cccCCCcccccccccCCCCc---c---cccc-cCcccC
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGS-S-VIEELN-ESRWIWPLEIDIKNKHKGIN---F---GAFL-KDIECF 80 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~-~-~~~~~p-~~r~~~~~~~~~~~~~~~~~---~---~~~l-~~~~~F 80 (831)
|+.++.|+|+|+.+|....+.++|++.+.... + ...++. ..+|-. ...++. + ..++ .+...|
T Consensus 9 m~~~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~--------~~tGI~~R~~~~~~~~~~~~p~~~ 80 (387)
T 3a5r_A 9 MKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLC--------ENSRIEKRYLHVTEEILKENPNIA 80 (387)
T ss_dssp --CCEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHH--------HTTTCCEEECSCCHHHHHHCHHHH
T ss_pred cCCCcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHH--------HhCCCCceEEecChhhhccCcccc
Confidence 55679999999999976666677887763211 0 000000 001100 000110 0 0111 234558
Q ss_pred CCCCCCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhH
Q psy11395 81 DAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAV 160 (831)
Q Consensus 81 D~~~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 160 (831)
|+.|+++..++...+.....|+.+++.+||+++|+++++++ .|++++... + ....
T Consensus 81 ~~~~~~~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id----~li~~t~~~-~--------------------~~p~ 135 (387)
T 3a5r_A 81 AYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKIT----HLIVCCLAG-V--------------------DMPG 135 (387)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC----EEEEEESSC-C--------------------EESC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCC-C--------------------CCCc
Confidence 88899999999999999999999999999999999998887 577776542 1 1123
Q ss_pred HHHHHHHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCcccc
Q psy11395 161 LANRISYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFD 237 (831)
Q Consensus 161 ~a~ris~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd 237 (831)
.+.+|+..||++++ .+.|+++|+|++.||..|+++|++|.++.+||+|+|.+... + ..|+|
T Consensus 136 ~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~----------~------~~~~d 199 (387)
T 3a5r_A 136 ADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTC----------F------RGPSE 199 (387)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCTTT----------C------CCCCS
T ss_pred HHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccchh----------h------cCCCc
Confidence 68899999999885 78999999999999999999999999999999999985321 0 12333
Q ss_pred ----CCCCcceecCceEEEEecchhhhhhCC-CceEEEEeeeeecc--CCCCC--------C--C-CCCC-----HHHHH
Q psy11395 238 ----KNADGYVRGEGAVMLMLKPLSVALNDH-DNIYAIIKGSAITH--NGQSN--------G--L-TAPN-----PIQQS 294 (831)
Q Consensus 238 ----~~a~G~v~gEGaaavvL~~~~~A~~~g-~~i~a~I~g~~~~~--dg~~~--------~--~-~~p~-----~~~~~ 294 (831)
....++++||||+|+||++.+.. + ......+.+.+... ++... + + ..+. .....
T Consensus 200 ~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~ 276 (387)
T 3a5r_A 200 THLDSMIGQAILGDGAAAVIVGADPDL---TVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIK 276 (387)
T ss_dssp SCCSSTTHHHHBCCEEEEEEEESSCCT---TTCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHH
T ss_pred cchhhccccceeccceeEEEEecCCCc---cccCCceEEEeeeEEEeCCChHhcCceEcCCCeEEEecchHHHHHHHHHH
Confidence 23467899999999999875431 1 11112344433211 11000 0 0 0111 24456
Q ss_pred HHHHHHHHHcCCC-CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHH
Q psy11395 295 YLLQKAWNESNID-VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGIT 372 (831)
Q Consensus 295 ~~i~~al~~Agl~-~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~ 372 (831)
++++++|+++|++ .+|| ++-.|-.+..+-| ++.+.++-.. .++... .+...+||+.+|+-..
T Consensus 277 ~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i~~-----~~~~~lgl~~----------ek~~~s~~~l~~~GNtssAsi~~ 340 (387)
T 3a5r_A 277 TCLSDAFTPLNISDWNSL-FWIAHPGGPAILD-----QVTAKVGLEK----------EKLKVTRQVLKDYGNMSSATVFF 340 (387)
T ss_dssp HHHHHHHGGGTCCCGGGS-EEEECCSCHHHHH-----HHHHHHTCCG----------GGGHHHHHHHHHHCBCGGGHHHH
T ss_pred HHHHHHHHhcCCCChhhe-eEEECCCCHHHHH-----HHHHHcCCCh----------HHhHHHHHHHHhcCCcchhHHHH
Confidence 7889999999998 8899 8999977664433 3344443110 122222 3445689999999888
Q ss_pred HHHHHHHHH-hcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 373 GILKIILCL-KNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 373 ~lik~~l~L-~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
.|..++..= +.|.+.| .....++++.+||.|-+-..++|+-.
T Consensus 341 ~L~~~~~~g~~~G~~~~--------------------------------G~~~d~vll~~fG~G~t~~~~ll~~~ 383 (387)
T 3a5r_A 341 IMDEMRKKSLENGQATT--------------------------------GEGLEWGVLFGFGPGITVETVVLRSV 383 (387)
T ss_dssp HHHHHHHHHHHTTCSBT--------------------------------TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHHHHHHhccccCCCCC--------------------------------CCCcceEEEEEecCcceeeehhheec
Confidence 877766432 1111000 00114688999999999999998753
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=166.86 Aligned_cols=250 Identities=16% Similarity=0.174 Sum_probs=164.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC
Q psy11395 94 SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173 (831)
Q Consensus 94 ~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G 173 (831)
.......|+.+|+.+||++||+++++++ .|++++...++. ....+.+|+..||++.
T Consensus 113 ~~~~~~~La~~Aa~~AL~~agi~~~dId----~vi~~t~t~~~~--------------------~p~~a~~v~~~LGl~~ 168 (392)
T 3led_A 113 ELSILAEMAVTAAEQAIERWGKPRERIG----AVLCACSNMQRA--------------------YPAMAIEVQNALGLGG 168 (392)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSCGGGEE----EEEEESSCCSCS--------------------BSCHHHHHHHHTTCCS
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEecCCCCC--------------------ccHHHHHHHHHhCCCC
Confidence 3334678999999999999999998887 688888655441 1136788999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
|++.|+.+|+|++.||..|+++|++|.++.+||+|+|.+... +. +.| ....+++||||+|+|
T Consensus 169 ~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~S~~-----------~d------~~d-r~t~~lFGDGA~A~v 230 (392)
T 3led_A 169 FAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEICSGH-----------LN------FRD-RDSHFIFGDVATAAI 230 (392)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGG-----------CC------TTC-TTTTTTBCEEEEEEE
T ss_pred eEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhcCCc-----------CC------cCc-ccCCcccccccEEEE
Confidence 999999999999999999999999999999999999985321 11 111 124678999999999
Q ss_pred ecchhhhhhCCCceEEEEeeeeeccCCCCC-----C---------------CCCCCH--------HHHHHHHHHHHHHcC
Q psy11395 254 LKPLSVALNDHDNIYAIIKGSAITHNGQSN-----G---------------LTAPNP--------IQQSYLLQKAWNESN 305 (831)
Q Consensus 254 L~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-----~---------------~~~p~~--------~~~~~~i~~al~~Ag 305 (831)
|++.+... .+.. |.++...+++... + ....++ ....++++++|+++|
T Consensus 231 l~~~~~~~-~~~~----i~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~~i~~~L~~~g 305 (392)
T 3led_A 231 VERADDAQ-GGWS----ILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSEMIIEHAREIG 305 (392)
T ss_dssp EEEGGGCC-SSEE----EEEEEEEECCCSSEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEecCCCC-CCCe----EEEEEEEEccccccccCCCcccCCCccccccccceEEechHHHHHHHHHHHHHHHHHHHHHcC
Confidence 98754210 1112 3333332222100 0 000112 234567899999999
Q ss_pred CCCCCcceEEecCCCCCCCCHHHHHHHHHHh-hhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcC
Q psy11395 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAF-HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNK 384 (831)
Q Consensus 306 l~~~dId~ie~HgtGT~~gD~~E~~al~~~f-~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~ 384 (831)
++++|||++-.|-.+..+ .+++.+.+ +-.... .++. ..-..+||+.+|+=...|-. + .+
T Consensus 306 l~~~dId~~v~Hqan~~i-----~~~~~~~llgl~~~~--------~k~~--~~l~~~GNtssAsipl~L~~----~-~~ 365 (392)
T 3led_A 306 IDPHGLKRMWLHQANINM-----NEIIGRKVLGRDPTR--------DENV--IILDDYANTSSAGSIIAFHK----H-QD 365 (392)
T ss_dssp CCGGGCSEEEECSSCHHH-----HHHHHHHHHTSCCCT--------TTBC--CCHHHHCBCGGGHHHHHHHH----C-CT
T ss_pred CCHHHCcEEEEcCCCHHH-----HHHHHHHhcCCCCCH--------HHHH--HHHhhhCccHHHHHHHHHHH----H-hC
Confidence 999999999999554432 23333332 310000 1111 12234699988875544432 1 11
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 385 KLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 385 ~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+ .+..++++.+||.|-+-+.++|+.
T Consensus 366 ~~-----------------------------------~~Gd~vll~gfG~G~t~~~~ll~~ 391 (392)
T 3led_A 366 DM-----------------------------------AQGDLGLICSFGAGYSAGTVFVQK 391 (392)
T ss_dssp TC-----------------------------------CTTCEEEEEEEETTTEEEEEEEEE
T ss_pred CC-----------------------------------CCCCEEEEEEEChhhEeEEEEEEE
Confidence 11 012458888999999999999873
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=175.94 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=209.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhc-CC-CceeeCC-cccCCCcccccccccCCCCccccccc--CcccCCCCCC--
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKK-GS-SVIEELN-ESRWIWPLEIDIKNKHKGINFGAFLK--DIECFDAPFF-- 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~-g~-~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~l~--~~~~FD~~~f-- 85 (831)
.++.|+|+|+.+|....+.++|++.+.. .. +...+++ ..+|.. ...++..-.+.. ++...+|.||
T Consensus 37 ~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~--------~~tGI~~R~~a~~~~~~~~~p~~~~~ 108 (413)
T 1xes_A 37 GFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRIC--------ERSAIKQRYMYLTEEILKKNPDVCAF 108 (413)
T ss_dssp SCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHH--------HTSCCCEEECSCCHHHHHTCHHHHSS
T ss_pred CCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHH--------hhcCcCceEEeeChhhhccCcccccc
Confidence 4699999999999866677888877633 11 0000000 011100 001110000100 0011233333
Q ss_pred ----CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHH
Q psy11395 86 ----KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVL 161 (831)
Q Consensus 86 ----~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 161 (831)
.+..+....++....|+.+++.+||+++|+++++++ .|++|+... + .....
T Consensus 109 ~~~~~~~~r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id----~li~~t~~~-~--------------------~~p~~ 163 (413)
T 1xes_A 109 VEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGIT----HLIFCSTTT-P--------------------DLPGA 163 (413)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC----EEEEEESCC-C--------------------EESCH
T ss_pred ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEEeCC-C--------------------ccchH
Confidence 234566667778899999999999999999998887 688887643 1 11236
Q ss_pred HHHHHHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccC
Q psy11395 162 ANRISYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDK 238 (831)
Q Consensus 162 a~ris~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~ 238 (831)
+.+|+..||++++ .+.|+++|+|++.||..|+++|++|.++.+||+|+|.+... +..+. .++|+.
T Consensus 164 a~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~----------~~~~~--d~~~~~ 231 (413)
T 1xes_A 164 DFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVT----------FRGPS--ETHLDS 231 (413)
T ss_dssp HHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTT----------CCCCC--TTCHHH
T ss_pred HHHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhh----------hcCCC--ccchhh
Confidence 7899999999885 78999999999999999999999999999999999985431 11111 135555
Q ss_pred CCCcceecCceEEEEecchhhhhhCC-CceEEEEeeeeecc--CCCCC--------C--C-CCCC-----HHHHHHHHHH
Q psy11395 239 NADGYVRGEGAVMLMLKPLSVALNDH-DNIYAIIKGSAITH--NGQSN--------G--L-TAPN-----PIQQSYLLQK 299 (831)
Q Consensus 239 ~a~G~v~gEGaaavvL~~~~~A~~~g-~~i~a~I~g~~~~~--dg~~~--------~--~-~~p~-----~~~~~~~i~~ 299 (831)
...++++||||+|+||++.+.. + ......+.+.+... ++... + + ..+. .....+++++
T Consensus 232 ~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~ 308 (413)
T 1xes_A 232 LVGQALFGDGASALIVGADPIP---QVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVE 308 (413)
T ss_dssp HHHHHHBCCEEEEEEEESSCCT---TTSCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHHH
T ss_pred cccceeEecccEEEEEecCCCc---cccCCceEEEeeeeEEcCCChhhcCcEEecCceEEEecccHHHHHHHHHHHHHHH
Confidence 6678999999999999875431 2 11112344433211 11000 0 0 0111 2455678999
Q ss_pred HHHHcCCC-CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHH
Q psy11395 300 AWNESNID-VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKI 377 (831)
Q Consensus 300 al~~Agl~-~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~ 377 (831)
+|+++|++ .+|| ++-.|-.+..+- +++.+.++-.. .++... .+...+||+.+|+-...|..+
T Consensus 309 ~L~~~gl~d~~di-~~v~Hq~~~~i~-----~~~~~~Lgl~~----------ek~~~s~~~l~~~GNtssAsi~~~L~~~ 372 (413)
T 1xes_A 309 AFSQFKISDWNKL-FWVVHPGGRAIL-----DRVEAKLNLDP----------TKLIPTRHVMSEYGNMSSACVHFILDQT 372 (413)
T ss_dssp HHGGGTCCCGGGS-EEEECCSCHHHH-----HHHHHHTTCCT----------TTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHhcCCCCccce-eEEECCCCHHHH-----HHHHHHcCCCh----------HHhHHHHHHHHhcCcCchhhHHHHHHHH
Confidence 99999998 8888 799997665432 23444443110 122221 234557999999988887776
Q ss_pred HHHH-hcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 378 ILCL-KNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 378 ~l~L-~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+..= +.|.+.+ .....++++.+||.|-+-..++|+-.
T Consensus 373 ~~~g~~~G~~~~--------------------------------G~~~d~vll~~fG~G~t~~~~ll~~~ 410 (413)
T 1xes_A 373 RKASLQNGCSTT--------------------------------GEGLEMGVLFGFGPGLTIETVVLKSV 410 (413)
T ss_dssp HHHHHHTTCSBT--------------------------------TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHhccccCCCCC--------------------------------CCCcceEEEEEecCCcEEeEEEEEec
Confidence 6432 1111000 00114688899999999999999754
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=161.41 Aligned_cols=241 Identities=16% Similarity=0.236 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|+.+++.+||+++|+++++++ .|++++...++. ....+.+++..+|++ .|++
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~~Id----~vi~~t~~~~~~--------------------~p~~a~~v~~~lGl~~~~~~ 113 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQDIE----LIIVATTSHSHA--------------------YPSAACQVQGLLNIDDAISF 113 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCC----EEEEECSCCSCS--------------------SSCHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CccHHHHHHHHhCCCCccEE
Confidence 568999999999999999999988 688888655431 113678899999995 5999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... .. ..+...+++||||+|+||++
T Consensus 114 ~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~~-------~d~~~~~lfGDGA~A~vl~~ 175 (323)
T 3il3_A 114 DLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKL-----------DE-------TDRSTVVLFGDGAGAVILEA 175 (323)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGSC-----------CT-------TCTTTTTTBCEEEEEEEEEE
T ss_pred EECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeecccccc-----------Cc-------cccccccccccceEEEEEEE
Confidence 9999999999999999999999999999999999864321 11 11124577899999999987
Q ss_pred hhhhhhCCCceEEEEeeeeeccCCCCC---------------CCCCCCH--------HHHHHHHHHHHHHcCCCCCCcce
Q psy11395 257 LSVALNDHDNIYAIIKGSAITHNGQSN---------------GLTAPNP--------IQQSYLLQKAWNESNIDVRSLGY 313 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~~~~dg~~~---------------~~~~p~~--------~~~~~~i~~al~~Agl~~~dId~ 313 (831)
.+ +..+.. +...++|... ....-++ ....++++++|+++|++++|||+
T Consensus 176 ~~-----~~~i~~----~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~ 246 (323)
T 3il3_A 176 SE-----QEGIIS----THLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDW 246 (323)
T ss_dssp ES-----SCCEEE----EEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTTCCE
T ss_pred cC-----CCCeEE----EEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 43 223333 2222222110 0000011 23457789999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCC
Q psy11395 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFY 393 (831)
Q Consensus 314 ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~ 393 (831)
+-.|-.+..+ .+++.+.++-.. .++.. . -..+||+.+|+=...|..++ +.+.+.
T Consensus 247 ~v~Hq~~~~i-----~~~~~~~lgl~~----------ek~~~-~-l~~~GNt~sasi~~~L~~~~---~~g~~~------ 300 (323)
T 3il3_A 247 LVPHQANLRI-----ITATAKKLEMDM----------SQVVV-T-LDKYANNSAATVPVALDEAI---RDGRIQ------ 300 (323)
T ss_dssp EEECCSCHHH-----HHHHHHHTTCCG----------GGBCC-C-HHHHCBCGGGHHHHHHHHHH---HTTSSC------
T ss_pred EEEcCCCHHH-----HHHHHHHcCcCH----------HHhhc-c-HhhcCchHHHHHHHHHHHHH---HcCCCC------
Confidence 9999655432 344444443210 12222 2 23569999998777665543 333221
Q ss_pred CCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 394 ~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+..+.+..+||.|-+-+.++|+
T Consensus 301 -----------------------------~Gd~vll~~~G~G~t~~~~~l~ 322 (323)
T 3il3_A 301 -----------------------------RGQLLLLEAFGGGWTWGSALVR 322 (323)
T ss_dssp -----------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred -----------------------------CCCEEEEEEEehhheeEEEEEE
Confidence 1245788899999999999886
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=167.18 Aligned_cols=297 Identities=12% Similarity=0.088 Sum_probs=190.6
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
+.|.|+|+|..+|.-.-+.+++.+.+. + .+ +.|.. . . .||..+..
T Consensus 29 ~~v~I~gig~~lP~~~v~n~~l~~~~~-~------~~-~~~i~----~----~-------------------tGI~~R~~ 73 (365)
T 3gwa_A 29 PRAAIADIAGHLPEQVLTNDVLAQLYP-D------WP-AEKIL----A----K-------------------TGIRERRI 73 (365)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHHHCT-T------CC-HHHHH----H----H-------------------HCCCEEEE
T ss_pred ccEEEEEEEEeCCCcEEcHHHHHHHcc-C------CC-HHHHH----H----h-------------------cCccEEEE
Confidence 569999999999986667788877652 1 11 11210 0 0 01111110
Q ss_pred cc-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC
Q psy11395 93 ES-MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF 171 (831)
Q Consensus 93 ~~-mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 171 (831)
.. -.....|+.+++.+||+++|+++++++ .|++++...++. ....+.+|+..+|+
T Consensus 74 a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id----~vi~~t~~~~~~--------------------~p~~a~~v~~~lGl 129 (365)
T 3gwa_A 74 AAPRETAADLAYEAARKLFAQGAVGADQVD----FVILCTQAPDYV--------------------LPTSACMLQHRLGI 129 (365)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCCGGGCC----EEEEEESSCSCS--------------------BSCHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CCcHHHHHHHHcCC
Confidence 00 012568999999999999999999988 688887654431 11357889999999
Q ss_pred C--CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCce
Q psy11395 172 T--GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGA 249 (831)
Q Consensus 172 ~--Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGa 249 (831)
. .|++.|+.+|+|++.||..|+++|++|.++.+||+|+|.+..... +. | .....++||||
T Consensus 130 ~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~-----------~~------d-r~~~~lfGDGA 191 (365)
T 3gwa_A 130 PTHAGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLH-----------PL------D-KSVRTLFGDGA 191 (365)
T ss_dssp CTTSEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSC-----------TT------C-HHHHTTBCCEE
T ss_pred CCCceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCC-----------cc------c-cccccccccee
Confidence 7 699999999999999999999999999999999999998654211 11 0 11245789999
Q ss_pred EEEEecchhhhhhCCCceEEEEeee-ee-------ccCCCCCC--------------------CCCCC--------HHHH
Q psy11395 250 VMLMLKPLSVALNDHDNIYAIIKGS-AI-------THNGQSNG--------------------LTAPN--------PIQQ 293 (831)
Q Consensus 250 aavvL~~~~~A~~~g~~i~a~I~g~-~~-------~~dg~~~~--------------------~~~p~--------~~~~ 293 (831)
+|+||++.+.. ...+.....++ +. ...|.... ...-+ ....
T Consensus 192 aA~vl~~~~~~---~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~ 268 (365)
T 3gwa_A 192 SATAVIAEHGE---LERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEV 268 (365)
T ss_dssp EEEEEEEECSS---SCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHHHHHHHHHHH
T ss_pred EEEEEEecCCC---CCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHHHHHHHHHHH
Confidence 99999864321 11233322211 11 00111000 00001 1344
Q ss_pred HHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHH
Q psy11395 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITG 373 (831)
Q Consensus 294 ~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~ 373 (831)
.++++++|+++|++++|||++-.|-.+..+ .+++.+.++-.. .++. ..-..+||+.+||=...
T Consensus 269 ~~~i~~~L~~~gl~~~did~~v~Hq~n~~i-----~~~~~~~Lgl~~----------ek~~--~~l~~~GNtssAsipl~ 331 (365)
T 3gwa_A 269 PRAADRLLALAGEPRENIDCFVLHQANRFM-----LDALRKKMKIPE----------HKFP--VLMEHCGNTVSSTLPLA 331 (365)
T ss_dssp HHHHHHHHHHHTCCGGGCSEEEECCCCHHH-----HHHHHHHHTCCG----------GGSC--CCCTTTCBCGGGHHHHH
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHhCCCH----------HHHH--HHHhcccchHHHHHHHH
Confidence 678899999999999999999999655432 344555554211 1222 22356799999886665
Q ss_pred HHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 374 ILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 374 lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
|..+ ++.+.+. +..+.+..+||.|-+-+.+||+
T Consensus 332 L~~~---~~~g~~~-----------------------------------~Gd~vll~~fG~G~t~~~~ll~ 364 (365)
T 3gwa_A 332 LETM---RANGTLA-----------------------------------RGMRLMLLGFGVGYSWAGCLVN 364 (365)
T ss_dssp HHHH---HHTTCCC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHH---HHcCCCC-----------------------------------CCCEEEEEEEehhheeEEEEEE
Confidence 5444 3333221 1245888899999999999886
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=176.05 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
...|+.+++.+||++ +++++++ .|++|+...++ .....+..|+..||++ .|+
T Consensus 51 ~~~la~~Aa~~aL~~--~~~~~Id----~li~~t~~~~~--------------------~~p~~a~~v~~~lGl~~~~~~ 104 (396)
T 1xpm_A 51 IVSMGANAAKDIITD--EDKKKIG----MVIVATESAVD--------------------AAKAAAVQIHNLLGIQPFARC 104 (396)
T ss_dssp HHHHHHHHHHTTCCH--HHHHHEE----EEEEECSSCSB--------------------SSSCHHHHHHHHTTCCSSCEE
T ss_pred HHHHHHHHHHHHHhc--CCHHHCC----EEEEEeCCCCC--------------------CCCCHHHHHHHHhCCCCCceE
Confidence 567899999999988 4554444 46667754432 0113678999999997 499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+.|.++|+|++.||..|+++|++|.++.+||+|+|. ... . ++ ..++++.||||+++||+
T Consensus 105 ~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~-s~~-~------------------~~-~~~~~~~GdGA~A~vl~ 163 (396)
T 1xpm_A 105 FEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT-ARY-G------------------LN-SGGEPTQGAGAVAMVIA 163 (396)
T ss_dssp EEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE-ECC-C------------------TT-CSSGGGCEEEEEEEEEE
T ss_pred EEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh-hcc-c------------------cC-CCCCcccccceEEEEec
Confidence 999999999999999999999999999999999996 221 1 11 13689999999999998
Q ss_pred chhhhhhCCCceEEEEeeeeecc-CCCCCCCCCC--------CHHH--------HHHHHHHHHHHcCCCCCCcceEEecC
Q psy11395 256 PLSVALNDHDNIYAIIKGSAITH-NGQSNGLTAP--------NPIQ--------QSYLLQKAWNESNIDVRSLGYIECHG 318 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~~~~-dg~~~~~~~p--------~~~~--------~~~~i~~al~~Agl~~~dId~ie~Hg 318 (831)
+. ..+++...+.+... +... +..| ++.. ..++++++|+++|++++|||||..|+
T Consensus 164 ~~-------~~i~~~~~~~g~~~~d~~~--~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl~~~did~~~~H~ 234 (396)
T 1xpm_A 164 HN-------PSILALNEDAVAYTEDVYD--FWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHV 234 (396)
T ss_dssp ES-------CSSEEECSCCEEEECCCCS--EECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECC
T ss_pred cC-------CceEEEEeccccccceEEE--eeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEecC
Confidence 63 24666655543332 2211 1122 3433 67889999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhhcccccccccc-cccccCCCCcccchhhhHHHHHHHHH
Q psy11395 319 TGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGILKIIL 379 (831)
Q Consensus 319 tGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~-~vgs~K~~iGH~~~AsG~~~lik~~l 379 (831)
+++++.|.+....+....+- .. .... ..+ +--.+...+||+.+||-...|..++.
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~-~~-e~~~----~~~~~s~~~~~~~GN~~saSi~l~L~~~l~ 290 (396)
T 1xpm_A 235 PFTKMGKKALESIIDNADET-TQ-ERLR----SGYEDAVDYNRYVGNIYTGSLYLSLISLLE 290 (396)
T ss_dssp SSHHHHHHHHHTTGGGSCHH-HH-HHHH----HHHHHHTTGGGGTCCCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhcccC-CH-HHHH----HHhhhhhhhhhhcCchHHHHHHHHHHHHHH
Confidence 99988776543222110000 00 0000 000 00122356899999998888776654
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-15 Score=160.24 Aligned_cols=297 Identities=15% Similarity=0.167 Sum_probs=183.5
Q ss_pred CCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChh
Q psy11395 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPI 90 (831)
Q Consensus 11 ~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ 90 (831)
|+..|.|+|+|..+|.-.-+.+++.+.+. .+ +.|.. .. .||..+
T Consensus 1 ~~~~~~I~~~g~~lP~~~v~n~~~~~~~~--~~-------~~~i~--------~~-------------------~Gi~~R 44 (321)
T 3il6_A 1 MKNYARISCTSRYVPENCVTNHQLSEMMD--TS-------AAWIH--------SR-------------------TGISER 44 (321)
T ss_dssp -CCEEEEEEEEEECCSCEEEHHHHHHHTT--SC-------HHHHH--------HH-------------------HSCSEE
T ss_pred CCCcEEEEEEEEECCCcEEcHHHHHHHhC--CC-------hhhhh--------hh-------------------cCceEE
Confidence 55679999999999986567788776542 11 12210 00 011111
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC
Q psy11395 91 EAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN 170 (831)
Q Consensus 91 ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg 170 (831)
....-+....|+.+++.+||+++|+++++++ .|++|+...++. ....+.+++..||
T Consensus 45 ~~a~~~e~~~La~~Aa~~aL~~ag~~~~~Id----~li~~t~~~~~~--------------------~p~~a~~v~~~lG 100 (321)
T 3il6_A 45 RIVTQENTSDLCHQVAKQLLEKSGKQASEID----FILVATVTPDFN--------------------MPSVACQVQGAIG 100 (321)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSSCSCS--------------------SSCHHHHHHHHTT
T ss_pred EECCCCCHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCcC--------------------CCcHHHHHHHHcC
Confidence 0000011678999999999999999999887 688888654431 1236889999999
Q ss_pred CC-CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCce
Q psy11395 171 FT-GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGA 249 (831)
Q Consensus 171 l~-Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGa 249 (831)
++ .|++.|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... . +..+....++||||
T Consensus 101 l~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~-------~~dr~~~~lfGDGA 162 (321)
T 3il6_A 101 ATEAFAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKML-----------D-------WTDRSTAVLFGDGA 162 (321)
T ss_dssp CTTCEEEEECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECGGGGS-----------C-------TTCTTTGGGBCCEE
T ss_pred CCCceEEEeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccccccC-----------C-------ccccccceeecccc
Confidence 97 59999999999999999999999999999999999999863211 1 11122456789999
Q ss_pred EEEEecchhhhhhCCCceEEEEeee-ee-----ccC--CCCCC----------CCCCCHHH----HHHHHHHHHHHcCCC
Q psy11395 250 VMLMLKPLSVALNDHDNIYAIIKGS-AI-----THN--GQSNG----------LTAPNPIQ----QSYLLQKAWNESNID 307 (831)
Q Consensus 250 aavvL~~~~~A~~~g~~i~a~I~g~-~~-----~~d--g~~~~----------~~~p~~~~----~~~~i~~al~~Agl~ 307 (831)
+|+||++.+. ..+.....++ +. ... |.... ....++.. ..+.+.++++++ +.
T Consensus 163 ~A~vl~~~~~-----~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~-l~ 236 (321)
T 3il6_A 163 AGVLIEAAET-----PHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNILSL-VT 236 (321)
T ss_dssp EEEEEEEESS-----CCEEEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHHHHTT-CC
T ss_pred EEEEEEEcCC-----CCEEEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHHHHHH-cC
Confidence 9999987542 1243322221 10 000 11100 11111211 122333334332 23
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccC
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ip 387 (831)
++|||++-.|-.+.. =.+++.+.++-.. .++.. .-..+||+.+|+=...|..++ +.+.+.
T Consensus 237 ~~did~~v~Hq~~~~-----i~~~~~~~lgl~~----------ek~~~--~l~~~GNt~sasi~~~L~~~~---~~g~~~ 296 (321)
T 3il6_A 237 DETVDYLLLHQANVR-----IIDKIARKTKISR----------EKFLT--NMDKYGNTSAASIPILLDEAV---ENGTLI 296 (321)
T ss_dssp GGGCSEEEECCSCHH-----HHHHHHHHHTCCG----------GGBCC--CGGGTCBCGGGHHHHHHHHHH---HTTSSC
T ss_pred cccCCEEEEcCCCHH-----HHHHHHHHcCcCH----------HHhhh--hHhhcccHHHHHHHHHHHHHH---HhCCCC
Confidence 899999999955443 2344555554211 12222 335679999998766665543 333221
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 388 p~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
| +...+.+..+||.|-+-..++|+
T Consensus 297 ~---------------------------------G~~d~vll~~fG~G~t~~~~~l~ 320 (321)
T 3il6_A 297 L---------------------------------GSQQRVVLTGFGGGLTWGSLLLT 320 (321)
T ss_dssp T---------------------------------TSCCEEEEEEEETTTEEEEEEEE
T ss_pred C---------------------------------CCCCEEEEEEEehhheeEEEEEE
Confidence 1 01146888999999999999885
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=159.12 Aligned_cols=248 Identities=14% Similarity=0.149 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++.+||+++|+++++++ .|++++...++. ....+.+++..||++. |++
T Consensus 74 ~~~La~~Aa~~aL~~agl~~~dId----~vi~~t~~~~~~--------------------~p~~a~~v~~~lGl~~~~~~ 129 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDID----LLLVNTLSPDHH--------------------DPSQACLIQPLLGLRHIPVL 129 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGGGCC----EEEEECSSCSSS--------------------BSCHHHHHHHHHTCCSCCEE
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC----EEEEEeCCCCCC--------------------CCcHHHHHHHHcCCCCCcEE
Confidence 467999999999999999999988 688887654431 1136788999999964 999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... ...... ....+++||||+|+||++
T Consensus 130 ~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~-----------~~~d~~-----~~t~~lfGDGAaA~vl~~ 193 (359)
T 3h78_A 130 DIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRM-----------DCSDRG-----RNLSILLGDGAGAVVVSA 193 (359)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGC-----------CCSTTT-----HHHHTTBCEEEEEEEEEC
T ss_pred EECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccC-----------Cccccc-----ccccceecceeEEEEEEe
Confidence 9999999999999999999999999999999999864321 111000 112456899999999986
Q ss_pred hhhhhhCCCceEEEEeeee-ecc-----C--CCCC-C------------CCCCCH--------HHHHHHHHHHHHHcCCC
Q psy11395 257 LSVALNDHDNIYAIIKGSA-ITH-----N--GQSN-G------------LTAPNP--------IQQSYLLQKAWNESNID 307 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~-~~~-----d--g~~~-~------------~~~p~~--------~~~~~~i~~al~~Agl~ 307 (831)
.+. .+..++....++. ... . |... . ...-++ ....++++++|+++|++
T Consensus 194 ~~~---~~~~i~~~~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~~~~i~~~L~~~gl~ 270 (359)
T 3h78_A 194 GES---LEDGLLDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQTLVRIAGEMLAAHELT 270 (359)
T ss_dssp CSC---SSSEEEEEEEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC---CCCceEEEEEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 432 1234443322211 100 0 1100 0 000011 23457889999999999
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccC
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ip 387 (831)
++|||++-.|-.+..+ .+++.+.++-.. .++.. . -..+||+.+|+=...|..++.. +.
T Consensus 271 ~~did~~v~Hq~n~~i-----~~~~~~~lgl~~----------ek~~~-~-l~~~GNt~sAsi~l~L~~~~~~-----l~ 328 (359)
T 3h78_A 271 LDDIDHVICHQPNLRI-----LDAVQEQLGIPQ----------HKFAV-T-VDRLGNMASASTPVTLAMFWPD-----IQ 328 (359)
T ss_dssp GGGCSEEEECCSCHHH-----HHHHHHHHTCCG----------GGBCC-C-HHHHCBCGGGHHHHHHHHHGGG-----SC
T ss_pred HHHCCEEEECCCCHHH-----HHHHHHHhCcCH----------HHhhh-h-hhcccchHHHHHHHHHHHHHHh-----CC
Confidence 9999999999655433 344555443210 12222 2 2356999999877666554321 10
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 388 p~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
+..+.++.+||.|-+-+.++|+-
T Consensus 329 -----------------------------------~Gd~vll~~fG~G~t~~~~ll~~ 351 (359)
T 3h78_A 329 -----------------------------------PGQRVLVLTYGSGATWGAALYRK 351 (359)
T ss_dssp -----------------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred -----------------------------------CCCEEEEEEEchhhhheeeeEEe
Confidence 11357888999999999999974
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=161.07 Aligned_cols=342 Identities=13% Similarity=0.109 Sum_probs=202.1
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhc--CCCceeeCCcccCCC-cccccccccCCCCcccccccC-------cccCCC
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKK--GSSVIEELNESRWIW-PLEIDIKNKHKGINFGAFLKD-------IECFDA 82 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~--g~~~~~~~p~~r~~~-~~~~~~~~~~~~~~~~~~l~~-------~~~FD~ 82 (831)
.++.|+|+|..+|.-.-+.++|++.+.. ..+ .|.. ......-....++..-.+..+ ...++.
T Consensus 15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~--------~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~ 86 (393)
T 3ov2_A 15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSD--------DKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSY 86 (393)
T ss_dssp SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSS
T ss_pred CCeEEEEEEeeCCCcccCHHHHHHHHHHhhccc--------chHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccC
Confidence 4699999999999866677888887631 111 1100 000000000001110001100 111111
Q ss_pred CCCCCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHH
Q psy11395 83 PFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLA 162 (831)
Q Consensus 83 ~~f~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a 162 (831)
..-.+..+....++....|+.+|+.+||++||+++++++ .|++++... + ....++
T Consensus 87 ~~p~~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId----~vi~~t~t~-~--------------------~~p~~a 141 (393)
T 3ov2_A 87 KEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEIT----HLVFCSISG-I--------------------DMPGAD 141 (393)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCC----EEEEEESSC-C--------------------CBSCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEEeCC-C--------------------CCCCHH
Confidence 111234455555667889999999999999999999988 688887643 2 012368
Q ss_pred HHHHHHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCC
Q psy11395 163 NRISYFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKN 239 (831)
Q Consensus 163 ~ris~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~ 239 (831)
.+|...||+++. ++.|+.+|+|++.||..|+++|++|.++.+||+|+|.+... +..++. +.++..
T Consensus 142 ~~v~~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~----------~~~~~d--~~~~~~ 209 (393)
T 3ov2_A 142 YRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLS----------FRGPNE--GDFEAL 209 (393)
T ss_dssp HHHHHHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGT----------CCCCCT--TCHHHH
T ss_pred HHHHHHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchh----------ccCCcc--cchhhh
Confidence 899999999874 68999999999999999999999999999999999986311 111111 011111
Q ss_pred CCcceecCceEEEEecchhhhhhCCCceEEEEeeeeecc-CCCC--------CC---CCCCCH-----HHHHHHHHHHHH
Q psy11395 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH-NGQS--------NG---LTAPNP-----IQQSYLLQKAWN 302 (831)
Q Consensus 240 a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~-dg~~--------~~---~~~p~~-----~~~~~~i~~al~ 302 (831)
...+++||||+|+||++.+.. .-...++..+....... +... .+ ...+.. ....++++++|+
T Consensus 210 ~~~~lFGDGAaA~vl~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~ 288 (393)
T 3ov2_A 210 AGQAGFGDGAGAVVVGADPLE-GIEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALA 288 (393)
T ss_dssp HHHHHBCCEEEEEEEESSCCT-TTCCCSEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHTTSHHHHHHHHG
T ss_pred cccccccCccEEEEEEecCCC-cccCceeEEEecCcEEecCCcccCceeeeCCceEEEECcHHHHHHHHHHHHHHHHHHH
Confidence 235679999999999865431 10112232222111111 1000 00 001221 123568999999
Q ss_pred HcCCCC-CCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHHHH
Q psy11395 303 ESNIDV-RSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKIILC 380 (831)
Q Consensus 303 ~Agl~~-~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~l~ 380 (831)
++|+++ +|| ++-.|=.+.. =++++.+.++-.. .++..+ .+-..+||+.+|+=...|-.++..
T Consensus 289 ~~gl~~~~di-~~v~Hq~n~~-----i~~~v~~~Lgl~~----------ek~~~s~~~l~~~GNtssAsip~~L~~~~~~ 352 (393)
T 3ov2_A 289 PLGVREWNDV-FWVAHPGNWA-----IIDAIEAKLQLSP----------DKLSTARHVFTEYGNMQSATVYFVMDELRKR 352 (393)
T ss_dssp GGTCCSGGGS-EEEECCCCHH-----HHHHHHHHHTCCT----------TTTHHHHHHHHHHCBCGGGHHHHHHHHHHHH
T ss_pred HcCCCcccCc-EEEECCCChH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHhCChHHhHHHHHHHHHHHh
Confidence 999997 888 8899944432 2344555553210 112211 122346999999987777666543
Q ss_pred -HhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 381 -LKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 381 -L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
++.|.+.+- .+..+.+..+||.|-+-..++|+..+.
T Consensus 353 ~~~~g~~~~G--------------------------------~~~d~vll~~fG~G~t~~~~ll~~~~~ 389 (393)
T 3ov2_A 353 SAVEGRSTTG--------------------------------DGLQWGVLLGFGPGLSIETVVLRSMPL 389 (393)
T ss_dssp HHHTTCSBTT--------------------------------TTCSEEEEEEEETTTEEEEEEEEECBC
T ss_pred hhhcCCcCCC--------------------------------CCCCeEEEEEECccceeeeeeeEEccc
Confidence 222322110 012468889999999999999997653
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=160.88 Aligned_cols=246 Identities=13% Similarity=0.113 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Cc
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PS 175 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps 175 (831)
....|+.+++.+||+++|+++++++ .|++++..... +.. ..++.+|...+|++. |+
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~dId----~vi~~t~~~~~-------------~d~------~~~a~~v~~~lG~~~~~~ 109 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPADVS----LVLHSSLWFQG-------------IDL------WPAASYVAHEAVGRHVPA 109 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGEE----EEEEECSSCCS-------------SSS------SCHHHHHHHHHTCSSSCE
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCC-------------ccc------ccHHHHHHHHhCCCCCcE
Confidence 3578999999999999999998887 58888753100 000 024778899999965 99
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCC--EEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEE
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESS--QALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d--~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
+.|+.+|+|++.||..|+++|++|.++ .+||+|+|.+..+. + ..++. +..+++||||+|+|
T Consensus 110 ~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~----------~------~~~~~-~~~~lfGDGA~A~v 172 (357)
T 3s3l_A 110 FGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR----------I------DRWNS-VDVTMYGDGAAALV 172 (357)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT----------C------CTTTS-SSSCCBCCEEEEEE
T ss_pred EEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc----------c------ccccc-cCCcccccccEEEE
Confidence 999999999999999999999999999 99999999864321 0 11222 25778999999999
Q ss_pred ecchhhhhhCCCceEEEEeeeeeccCCCCC-------CCCCC--------C---------------------HHHHHHHH
Q psy11395 254 LKPLSVALNDHDNIYAIIKGSAITHNGQSN-------GLTAP--------N---------------------PIQQSYLL 297 (831)
Q Consensus 254 L~~~~~A~~~g~~i~a~I~g~~~~~dg~~~-------~~~~p--------~---------------------~~~~~~~i 297 (831)
|++.+. +.. |.++...++|... ....| . .....+++
T Consensus 173 l~~~~~----~~~----i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i 244 (357)
T 3s3l_A 173 LSTRDG----FAR----VLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLPDLTHRYIDLLVAAK 244 (357)
T ss_dssp EESSCC----SEE----EEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCTTHHHHHHHHHHHHH
T ss_pred EecCCC----CCe----EEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccchhhhHHHHHHHHHHHH
Confidence 986421 122 3333333333210 00000 0 12345678
Q ss_pred HHHHHHcCCCCCCcceEEe-cCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHH
Q psy11395 298 QKAWNESNIDVRSLGYIEC-HGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 298 ~~al~~Agl~~~dId~ie~-HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik 376 (831)
+++|+++|++++|||++-. |-.... -+. +.+.++-.. .++.. .+-..+||+.+|+=...|..
T Consensus 245 ~~~L~~~gl~~~did~~v~~hq~~~~-~~~-----~~~~lgl~~----------ek~~~-~~~~~~GNt~aAsipl~L~~ 307 (357)
T 3s3l_A 245 TQALEDAGTAIEDIAHAVIPVSRRGT-GHE-----LHDLLGLPD----------ERTSW-AYGRTTGHVGAGDQYAGLAH 307 (357)
T ss_dssp HHHHHHTTCCGGGCSEEECCSCCCCS-SCC-----HHHHHTSCG----------GGBTH-HHHHHHCBCTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHCCEEEecCcChHH-HHH-----HHHHcCCCH----------HHhHH-HhccccccchHhHHHHHHHH
Confidence 9999999999999999996 866654 332 333343210 11221 11123699999987666655
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
++ +.+.+- +..++++.+||.|-+-+.++|+-
T Consensus 308 ~~---~~g~l~-----------------------------------~Gd~vll~~fG~G~t~~a~ll~~ 338 (357)
T 3s3l_A 308 LV---ENALVQ-----------------------------------PGDRVLLFGGGAGYTCTAAVVEI 338 (357)
T ss_dssp HH---HTTCCC-----------------------------------TTCEEEEECCBTTTEEEEEEEEE
T ss_pred HH---HcCCCC-----------------------------------CCCEEEEEEEchhhhheeeeEEe
Confidence 54 333221 12468889999999999999974
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=164.33 Aligned_cols=181 Identities=10% Similarity=0.114 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC----CC
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF----TG 173 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl----~G 173 (831)
...|+.+|+.+||+++|+++++++ .|++|+.+.++. ...++..|+..||+ ..
T Consensus 52 ~~~La~~Aa~~aL~~agi~~~~Id----~li~~t~t~~~~--------------------~p~~a~~v~~~lgl~g~~~~ 107 (450)
T 2f82_A 52 VISMSFNAVTSLLEKYKIDPKQIG----RLEVGSETVIDK--------------------SKSIKTFLMQLFEKCGNTDV 107 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE----EEEEECCCCSCS--------------------SSCHHHHHTHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCcCHHHCC----EEEEEecCCCCC--------------------CCcHHHHHHHHhCCcCCCCc
Confidence 467999999999999999988776 577787654331 12467888888888 35
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCC--CEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGES--SQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~~--d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+++.|..+|+|++.||..|.++|++|.+ +.+||+|+|.+. |+....+.+.||||+|
T Consensus 108 ~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~----------------------~~~~~~~~~fGDGA~A 165 (450)
T 2f82_A 108 EGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV----------------------YAEGPARPTGGAAAIA 165 (450)
T ss_dssp BCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC----------------------CSSSTTGGGCEEEEEE
T ss_pred eEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc----------------------ccCCCCCcccccceEE
Confidence 8899999999999999999999999998 999999999852 1112356789999999
Q ss_pred EEecchhhhhhCCCceEEEEeeeeecc--CCCCC----CCCCCCH--------HHHHHHHHHHHH------HcCCCCCCc
Q psy11395 252 LMLKPLSVALNDHDNIYAIIKGSAITH--NGQSN----GLTAPNP--------IQQSYLLQKAWN------ESNIDVRSL 311 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I~g~~~~~--dg~~~----~~~~p~~--------~~~~~~i~~al~------~Agl~~~dI 311 (831)
+||++.+. . .+.....|+.... |.... ......+ .....+++.+++ ++|++++||
T Consensus 166 ~ll~~~~~----~-~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~~~di 240 (450)
T 2f82_A 166 MLIGPDAP----I-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240 (450)
T ss_dssp EEEESSCS----E-EEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGC
T ss_pred EEeccCCc----e-EEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCChhhc
Confidence 99976431 1 1222223433322 10110 0112222 234577788886 899999999
Q ss_pred ceEEecCCCCCCCCHHHH
Q psy11395 312 GYIECHGTGTKLGDPIEI 329 (831)
Q Consensus 312 d~ie~HgtGT~~gD~~E~ 329 (831)
||+..|.+++++.+.+..
T Consensus 241 d~~v~Hq~~~~i~~~~~~ 258 (450)
T 2f82_A 241 DYFVFHSPYNKLVQKSFA 258 (450)
T ss_dssp SEEEECCSSHHHHHHHHH
T ss_pred CEEEecCChHHHHHHHHH
Confidence 999999999988776643
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=158.80 Aligned_cols=248 Identities=15% Similarity=0.121 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps 175 (831)
...|+.+++.+||++||+++++++ .|++++...++. ....+.+|+..+|+ +.|.
T Consensus 66 ~~~La~~Aa~~aL~~agi~~~~Id----~vi~~t~~~~~~--------------------~p~~a~~v~~~lGl~~~~~~ 121 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGWQADSID----ALIFVSQTPNYR--------------------LPATAFVLQAELDLPASCLA 121 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSSCSCS--------------------SSCHHHHHHHHTTCCTTSEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CCcHHHHHHHHcCcCCCccE
Confidence 567999999999999999999988 688888655431 12367899999999 4699
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+.|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... ..+ | .....++||||+|+||+
T Consensus 122 ~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~~~------d-~~~~~lfGDGA~A~vl~ 183 (354)
T 4efi_A 122 LDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMI-----------DPT------D-RSTSLLFGDAGTMTALE 183 (354)
T ss_dssp EEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGC-----------CTT------C-HHHHTTBCCEEEEEEEE
T ss_pred EeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccC-----------Ccc------c-cccccccccceeEEEEe
Confidence 99999999999999999999999999999999999863321 110 1 11246789999999998
Q ss_pred chhhhhhCCCceEEEEeeeeec-------cCCCC--------------CCCCCCCH--------HHHHHHHHHHHHHcCC
Q psy11395 256 PLSVALNDHDNIYAIIKGSAIT-------HNGQS--------------NGLTAPNP--------IQQSYLLQKAWNESNI 306 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~~~~-------~dg~~--------------~~~~~p~~--------~~~~~~i~~al~~Agl 306 (831)
+.+. ...+...+...+.. ..|.. .....-++ ....++++++|+++|+
T Consensus 184 ~~~~----~~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl 259 (354)
T 4efi_A 184 TSNG----DAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNAVPKLVSRTLDIAGR 259 (354)
T ss_dssp ECCS----CCEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCC----CCceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6432 11121222211110 01100 00000111 3456678999999999
Q ss_pred CCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCcc
Q psy11395 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386 (831)
Q Consensus 307 ~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~i 386 (831)
+++|||++-.|-.+..+ .+++.+.++-.. .++.. .-..+||+.+|+=...|..++. .+.+
T Consensus 260 ~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~----------ek~~~--~l~~~GNt~sasi~~~L~~~~~---~g~~ 319 (354)
T 4efi_A 260 DKDSYDAFLFHQANLFM-----LKHLAKKAGLPA----------ERVPV--NIGEYGNTSCASIPLLITTELK---DRLK 319 (354)
T ss_dssp CGGGCSEEEECCCCHHH-----HHHHHHHTTCCG----------GGSCC--CHHHHCBCGGGHHHHHHHHHSH---HHHH
T ss_pred CHHHCCEEEeCCCCHHH-----HHHHHHHhCcCH----------HHHHH--HHhhhCcHHHHHHHHHHHHHHH---hCCC
Confidence 99999999999655432 344555553210 11221 1245799999987766655432 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 387 pp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
++..+.++.+||.|-+-+.++|+-.
T Consensus 320 -----------------------------------~~Gd~vll~~fG~G~t~~~~ll~~~ 344 (354)
T 4efi_A 320 -----------------------------------EETLQLGMFGFGVGYSWASAALAVG 344 (354)
T ss_dssp -----------------------------------HSCEEEEEEEEETTTEEEEEEEEEC
T ss_pred -----------------------------------CCCCEEEEEEEchhhhheeeEEEEC
Confidence 0124588899999999999999854
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=156.50 Aligned_cols=271 Identities=14% Similarity=0.143 Sum_probs=167.3
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHH
Q psy11395 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 87 i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+..+....++....|+.+|+.+||++||+++++++ .|++++... + .....+.+|.
T Consensus 85 ~~~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId----~li~~t~t~-~--------------------~~p~~a~~v~ 139 (387)
T 3oit_A 85 LDARLDIAADAVPELAAEAAKKAIAEWGRPAADIT----HLVVTTNSG-A--------------------HVPGVDFRLV 139 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCC----EEEEEESSC-C--------------------EESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeeCC-C--------------------CcccHHHHHH
Confidence 44555566667889999999999999999999988 688887643 2 0123688899
Q ss_pred HHcCCCCC---ccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc
Q psy11395 167 YFYNFTGP---SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243 (831)
Q Consensus 167 ~~lgl~Gp---s~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~ 243 (831)
..||+++. .+.++.+|+|++.||..|.++|++|.++.+||+|+|.+... +..++. +.++.....+
T Consensus 140 ~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~----------~~~~~d--~~~~~~~~~~ 207 (387)
T 3oit_A 140 PLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMY----------FTGPDE--GCFRTLLVQG 207 (387)
T ss_dssp HHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGT----------CCCCCS--SSCHHHHHHH
T ss_pred HHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchh----------ccCccc--cchHhhhccc
Confidence 99999874 68999999999999999999999999999999999986311 111110 0111112356
Q ss_pred eecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCC----------C---CCCCC-----HHHHHHHHHHHHHHc-
Q psy11395 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN----------G---LTAPN-----PIQQSYLLQKAWNES- 304 (831)
Q Consensus 244 v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~----------~---~~~p~-----~~~~~~~i~~al~~A- 304 (831)
++||||+|+||++.+. ........+.+.+......+. + ...+. .....++++++|+++
T Consensus 208 lFGDGAaA~vl~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~L~~~~ 284 (387)
T 3oit_A 208 LFGDGAAAVIVGADAD---DVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLL 284 (387)
T ss_dssp HBCCEEEEEEEESSCC---SSCCCCEEEEEEEEEECTTCTTSEEEEECSSSEEEEECTTHHHHHHHHHHHHHHHHTGGGC
T ss_pred ccccceEEEEEecCCC---cccCCceEEEecccEEeCCChhhccceeecCCeEEEECcHHHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999987431 111122234433221110000 0 00122 234567788889999
Q ss_pred ---CCCCCCcc--eEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHH
Q psy11395 305 ---NIDVRSLG--YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 305 ---gl~~~dId--~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~ 378 (831)
|++ |++ ++-.|=.+..+ ++++.+.++-.. .++... .+-...||+.+|+=...|-.+.
T Consensus 285 ~~~gl~--d~d~~~~v~Hq~n~~i-----l~~v~~~Lgl~~----------ek~~~s~~~l~~~GNtssAsip~~L~~~~ 347 (387)
T 3oit_A 285 GGDGGG--GWNDLFWAVHPGSSTI-----MDQVDAALGLEP----------GKLAASRRVLSDYGNMSGATVIFALDELR 347 (387)
T ss_dssp C--------GGGSEEEECCCCHHH-----HHHHHHHHTCCT----------TTTHHHHHHHHHHCBCGGGHHHHHHHHHH
T ss_pred ccCCCC--cccccEEEECCCCHHH-----HHHHHHHcCCCH----------HHHHHHHHHHHHhCchHHhHHHHHHHHHH
Confidence 987 555 99999554433 344444443210 112211 1223469999998776665532
Q ss_pred HHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEcccc
Q psy11395 379 LCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 379 l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~ 447 (831)
+. .+.+-- . ..+..+.++.+||-|-+-..++|+..|
T Consensus 348 ---~~-~~~~G~----~-------------------------g~~~d~vll~~fG~G~t~~~~ll~~~~ 383 (387)
T 3oit_A 348 ---RQ-RKEAAA----A-------------------------GEWPELGVMMAFGPGMTVDAMLLHATS 383 (387)
T ss_dssp ---HC----------------------------------------CCEEEEEEEETTTEEEEEEEEECC
T ss_pred ---Hh-hhccCC----C-------------------------CCCCCEEEEEEecccceeeeeeeEecc
Confidence 22 111100 0 001246888999999999999999764
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=153.57 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+|+.+||+++|+++++++ .|++++.+.+|. ....+.+|...||++. +++
T Consensus 62 ~~~la~~Aa~~aL~~ag~~~~dId----~li~~t~t~~~~--------------------~P~~a~~v~~~LGl~~~~a~ 117 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGLQGSDLD----AVIVSTVTFPHA--------------------TPSAAALVAHEIGATPAPAY 117 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCS----EEEEECSCCSCS--------------------SSCHHHHHHHHTTCTTSCEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccCCCC--------------------CCchHHHHHHHhCCCCceEE
Confidence 456999999999999999999987 588887765541 1236788999999975 888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|..+|++++.||..|..+|++|.++.+||.++|.+... + .+. .....+.+||||+|+||++
T Consensus 118 di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~s~~-----------~------d~~-~~~~~~lfgDGA~A~vl~~ 179 (350)
T 4ewp_A 118 DVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDV-----------V------DPT-DRSISFLLGDGAGAVIVAA 179 (350)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGG-----------C------CTT-CTTTGGGBCEEEEEEEEEE
T ss_pred EeecchhhHHHHHHHhhhhhhCCCccceeEeeeeeceec-----------c------ccc-ccccccccccchheeeeec
Confidence 899999999999999999999999999999999985321 1 111 1234577899999999986
Q ss_pred hhhhhhCCCceEEEEeeee-ec-----------------------cCCCC----CC----CCCCCH--------HHHHHH
Q psy11395 257 LSVALNDHDNIYAIIKGSA-IT-----------------------HNGQS----NG----LTAPNP--------IQQSYL 296 (831)
Q Consensus 257 ~~~A~~~g~~i~a~I~g~~-~~-----------------------~dg~~----~~----~~~p~~--------~~~~~~ 296 (831)
.+.. .+.....++. .. .+... .. ...-++ ....++
T Consensus 180 ~~~~-----~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~~ 254 (350)
T 4ewp_A 180 SDEP-----GISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKV 254 (350)
T ss_dssp ESSC-----CBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHHHHHHHHHHTHHHH
T ss_pred ccCC-----CccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhHHHHHHHHHhhhHH
Confidence 4321 1111111110 00 00000 00 000111 234578
Q ss_pred HHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHH
Q psy11395 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILK 376 (831)
Q Consensus 297 i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik 376 (831)
++++|+++|++++|||++-.|-.+..+ .+++.+.++-.. .++ +...-..+||+.+||=...|..
T Consensus 255 i~~~L~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~----------~~~-~~~~l~~~GNtssasi~~~L~~ 318 (350)
T 4ewp_A 255 AREALDAAGVEPEDLAAFIPHQANMRI-----IDEFAKQLKLPE----------SVV-VARDIADAGNTSAASIPLAMHR 318 (350)
T ss_dssp HHHHHHHHTCCGGGEEEEEECCSCHHH-----HHHHHHHTTCCT----------TSE-ECCTHHHHCBCGGGHHHHHHHH
T ss_pred HHHHHHhhcCChhHhceEEecCCCHHH-----HHHHHHHcCcCh----------HhE-EecccccccchHHHHHHHHHHH
Confidence 899999999999999999999555432 334444443110 111 1111134699998886655544
Q ss_pred HHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 377 IILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 377 ~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
++ +++.+. +..+++..+||-|=+-+.+||+
T Consensus 319 ~~---~~g~~~-----------------------------------~Gd~vll~~fG~G~t~~~~vlr 348 (350)
T 4ewp_A 319 LL---EENPEL-----------------------------------SGGLALQIGFGAGLVYGAQVVR 348 (350)
T ss_dssp HH---HHCGGG-----------------------------------TTSEEEEEEEETTTEEEEEEEE
T ss_pred HH---HhCCCC-----------------------------------CcCEEEEEEEchhhEeEEEEEE
Confidence 33 333221 1235777899977777778875
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-13 Score=149.31 Aligned_cols=265 Identities=13% Similarity=0.091 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-C-
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-P- 174 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-p- 174 (831)
....|+.+|+.+||++||+++++++ .|++++++ ++ .....+.+|...||+++ +
T Consensus 109 ~a~~La~~Aa~~AL~~agi~~~dId----~li~~t~t-~~--------------------~~P~~a~~v~~~LGl~~~~~ 163 (465)
T 3e1h_A 109 DGVPLAVEASRKAMAEARLVPAQIT----HMVSTTCT-DS--------------------ANPGYDHYVAKELGLSDRLE 163 (465)
T ss_dssp HTHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSS-CC--------------------CSSCHHHHHHHHHTCCTTCE
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeeC-CC--------------------CCCcHHHHHHHHhCCCCCee
Confidence 3458999999999999999999988 68888765 33 11236788999999986 4
Q ss_pred cccc-ccccchHHHHHHHHHHHHHc----CCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCce
Q psy11395 175 SLLI-DTACSSSLVAVHEALQSIKN----GESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGA 249 (831)
Q Consensus 175 s~tv-~taCsSsl~Al~~A~~~I~~----G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGa 249 (831)
.+.| ..+|++++.||..|.++|++ |.++.+||+|+|.+..... ....... ...+.....+++||||
T Consensus 164 ~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~S~~~~-~~~~~~~--------~~~~d~~t~~LFGDGA 234 (465)
T 3e1h_A 164 KVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVR-SELESID--------ALQETRIGIALFSDCA 234 (465)
T ss_dssp EEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECCGGGHH-HHHHHHH--------HHTCCCCHHHHBCCEE
T ss_pred EEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeecchhcC-ccccccc--------ccccccccccccccce
Confidence 5788 79999999999999999997 9999999999999533211 1110000 0111223456789999
Q ss_pred EEEEecchhhhhhCCCceEEEEeeeeeccCCCCC----------C---CCCCC-----HHHHHHHHHHHHHH-------c
Q psy11395 250 VMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN----------G---LTAPN-----PIQQSYLLQKAWNE-------S 304 (831)
Q Consensus 250 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~----------~---~~~p~-----~~~~~~~i~~al~~-------A 304 (831)
+|+||++..... ..+..+..+.++.......+. + ...+. ......+++++|++ +
T Consensus 235 aAvVl~~~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~g~~V~~~a~~~v~~~i~~~L~~~g~~L~~a 313 (465)
T 3e1h_A 235 SAVILSNGIGEA-PGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSS 313 (465)
T ss_dssp EEEEEECCTTCC-TTCCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred eEEEEEccCCCc-cccccceeeccceEEEecCCccccCccccCCCceEecChHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999998743211 012222234443222111100 0 00111 24456778888887 6
Q ss_pred CCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccccc-ccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 305 NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG-SVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 305 gl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vg-s~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
|++++||+|+ .|=.+.. =++++.+.++-.. .++... .+-..+||+.+|+=...|-.++ +.
T Consensus 314 gl~~~DId~~-~Hqan~r-----Il~~v~~~Lgl~~----------ek~~~s~~~l~~yGNtsSASip~aL~~~~---~~ 374 (465)
T 3e1h_A 314 YQKPADFDWA-MHPGGAT-----ILSGAESAMGLTP----------EHMRASYDRYINHGNSSSATIFSVLNRLR---EK 374 (465)
T ss_dssp SCSGGGSEEE-ECCSSHH-----HHHHHHHHHTCCG----------GGGHHHHHHHHHHCBCGGGHHHHHHHHHT---ST
T ss_pred CCCHHHceEE-ecCCChH-----HHHHHHHHhCcCH----------HHhHHHHHHHhcceechHhHHHHHHHHHH---Hh
Confidence 8999999999 9944433 3444555554211 111110 1112349998887555544432 22
Q ss_pred --CccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 384 --KKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 384 --~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
+.+.+.- ....+++..+||.|=+-..++|+-.
T Consensus 375 ~~g~l~~Gg-------------------------------~~~d~vll~gfG~Glt~~~~llr~~ 408 (465)
T 3e1h_A 375 DMDALAPGG-------------------------------KVKEYVVGCAFGPGINVEMCMLKRR 408 (465)
T ss_dssp TTTSCSSSS-------------------------------CCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred cccccCCCC-------------------------------CCCCEEEEEEEhHHHhhhheeeEEe
Confidence 1221110 0114688889999988889998864
|
| >3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=155.83 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=71.4
Q ss_pred EEcccCCCCceeEEEEcccccccccccc-----c---cccccCCCCCCCeEEEeccCCHhHHHHHHHHHHHHHhcccccC
Q psy11395 428 GVSSFGSGGTNAHVVLSEYNIEINNKII-----N---NISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNNKESLN 499 (831)
Q Consensus 428 ~v~sfG~gG~nahvil~~~~~~~~~~~~-----~---~~~~~~~~~~~~~l~~lSa~~~~~l~~~~~~~~~~l~~~~~~~ 499 (831)
-+++||+.|||+|+|+|+.|........ + .............+|+|||+|+++|++++++|.+||+.++...
T Consensus 5 ~~~~fg~sgtnah~~~e~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~lSA~s~~aL~~~a~~l~~~L~~~~~~~ 84 (491)
T 3tzy_A 5 RFDEFGNIITDSAVAEEPEPELPGVTEEALRLKEAALEELAAQEVTAPLVPLAVSAFLTSRKKAAAAELADWMQSPEGQA 84 (491)
T ss_dssp --------------------CCCCCCHHHHHHHHHHHHHHTTSCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHSHHHHT
T ss_pred cHhhcCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 4789999999999999998643211000 0 0001112223346799999999999999999999998766556
Q ss_pred ccHHHHHHHHHhccccCCceEEEEeCCHHHHHHHHHHHHccCCc
Q psy11395 500 ISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKII 543 (831)
Q Consensus 500 ~~l~~~~~tl~~~r~~~~~r~a~v~~~~~~l~~~l~~~~~~~~~ 543 (831)
..|.|+||||+ +|+||+||++|+++|++||+++|+.+..+...
T Consensus 85 ~~l~dla~tla-~R~~~~~R~~vva~~~~el~~~L~a~a~g~~~ 127 (491)
T 3tzy_A 85 SSLESIGRSLS-RRNHGRSRAVVLAHDHDEAIKGLRAVAAGKQA 127 (491)
T ss_dssp SCHHHHHHHHH-HSCCCSEEEEEEESSHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHh-cccCCCceEEEEECCHHHHHHhhhhhhcCCCC
Confidence 78999999996 79999999999999999999999999887654
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=144.99 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
...|+.+|+.+||+++| +++++ .|++|+.+.++. ....+..|...||+++ ++
T Consensus 56 ~~~La~~Aa~~aL~~a~--~~~Id----~li~~t~t~~~~--------------------~ps~a~~v~~~LGl~~~~~~ 109 (388)
T 3v4n_A 56 IVTFAANAAEAILTKED--KEAID----MVIVGTESSIDE--------------------SKAAAVVLHRLMGIQPFARS 109 (388)
T ss_dssp HHHHHHHHHHTTCCHHH--HHHEE----EEEEECSSCSBS--------------------SSCHHHHHHHHTTCCSSCEE
T ss_pred HHHHHHHHHHHHHHhCC--cccCC----EEEEEeccCCCc--------------------CccHHHHHHHHcCCCCCceE
Confidence 46799999999999997 56666 588887655431 1236788999999975 88
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEec
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLK 255 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~ 255 (831)
+.|..+|+|++.||..|+++|++|.++.+||+|+|.+... ++ ..+....||||+|+||.
T Consensus 110 ~dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~~--------------------~~-~~~~~lfGDGA~A~ll~ 168 (388)
T 3v4n_A 110 FEIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYG--------------------LN-SGGEPTQGAGAVAMLVS 168 (388)
T ss_dssp EEEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECCC--------------------TT-CTTGGGCEEEEEEEEEE
T ss_pred eehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhccc--------------------CC-CCCCCccccceeEEEee
Confidence 8999999999999999999999999999999999985321 11 01246789999999998
Q ss_pred chhhhhhCCCceEEEEeee-eeccCCCC----CCCCCC--C--------HHHHHHHHHHHHHHcCCCCCCcceEEecCCC
Q psy11395 256 PLSVALNDHDNIYAIIKGS-AITHNGQS----NGLTAP--N--------PIQQSYLLQKAWNESNIDVRSLGYIECHGTG 320 (831)
Q Consensus 256 ~~~~A~~~g~~i~a~I~g~-~~~~dg~~----~~~~~p--~--------~~~~~~~i~~al~~Agl~~~dId~ie~HgtG 320 (831)
+.. .+...-.+. +...+... .....| + ......+++++|+++|++++|||++-.|-..
T Consensus 169 ~~~-------~il~~~~~~~~~~~~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~v~Hqp~ 241 (388)
T 3v4n_A 169 SEP-------RILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPY 241 (388)
T ss_dssp ESC-------SSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHCCCGGGCSEEEECCSS
T ss_pred cCC-------CceEEeccccccchhccccccCCCCCCceeccHhHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEeCCCc
Confidence 632 232221111 11111000 000001 1 2445678899999999999999999999644
Q ss_pred CCCCCHHHH-------HHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHH
Q psy11395 321 TKLGDPIEI-------QGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKII 378 (831)
Q Consensus 321 T~~gD~~E~-------~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~ 378 (831)
++++-..-. +.+.+.++... .+ .-..-..+||+.+||=...|..++
T Consensus 242 ~k~~~ka~~ril~~~~~~~~~~l~~~~----------e~--~~~~~~~~GN~~sASi~l~L~~~l 294 (388)
T 3v4n_A 242 TKMGKKALLAKISDQTEAEQERILARY----------EE--SIIYSRRVGNLYTGSLYLGLISLL 294 (388)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHH----------HH--HTTTGGGTCCCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccHHHHHHhCCCH----------HH--HhhHHHhcCchHHHHHHHHHHHHH
Confidence 432111000 12222222110 11 112335679999998777666654
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-11 Score=133.66 Aligned_cols=245 Identities=11% Similarity=0.018 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--
Q psy11395 96 DPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-- 173 (831)
Q Consensus 96 dp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-- 173 (831)
+....|+.+|+.+||++||+++++++ .|++++..+ + .....+.+|+..+|+++
T Consensus 135 ~~~~~La~~Aa~~AL~~agi~~~dId----~li~~t~t~-~--------------------~~P~~a~~v~~~LGl~~~~ 189 (413)
T 3v7i_A 135 EAVQAYGERAARGALQIAGLDVADVD----CLITSNSTT-P--------------------ALPGLDVALANRLPLRGDT 189 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCC----EEEEECCSS-C--------------------CSSCHHHHHHHHTTCCTTC
T ss_pred cCHHHHHHHHHHHHHHHhCcCHHHCC----EEEEEccCC-C--------------------CcCHHHHHHHHHhCCCCCc
Confidence 45668999999999999999999888 688887653 2 01236788999999986
Q ss_pred Ccccc-ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCC----cceecCc
Q psy11395 174 PSLLI-DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNAD----GYVRGEG 248 (831)
Q Consensus 174 ps~tv-~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~----G~v~gEG 248 (831)
+.+.| +.+|+|++.||..|+++|++|.++.+||+|+|.+.... ++-|.+.+ ..++|||
T Consensus 190 ~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~-----------------~~~d~~~~~lv~~~LFGDG 252 (413)
T 3v7i_A 190 MLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY-----------------QPADDTLESLIVRLLFADT 252 (413)
T ss_dssp EEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGC-----------------CSSCCSTTHHHHHHHBCCE
T ss_pred eEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccccc-----------------Cccccchhhhhcceeeccc
Confidence 45777 99999999999999999999999999999999863211 11111111 5679999
Q ss_pred eEEEEecchhhhhhCCCceEEEEeeeeeccCCCCC----------C---CCCCC----HHHHHHHHHHHHH------HcC
Q psy11395 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN----------G---LTAPN----PIQQSYLLQKAWN------ESN 305 (831)
Q Consensus 249 aaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~----------~---~~~p~----~~~~~~~i~~al~------~Ag 305 (831)
|+|+||++.+. . .....|.+........+. + ...+. ......+++++|+ ++|
T Consensus 253 AaAvvl~~~~~----~-~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v~~~v~~~~~~i~~~L~~~~~~~~~g 327 (413)
T 3v7i_A 253 AVAAVVTGRPR----P-ESVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTAMWEWLRVRYEDDPSS 327 (413)
T ss_dssp EEEEEEESSCC----T-TEEEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTSSSCTT
T ss_pred cEEEEEEecCC----C-CCCEEEEccccEEeCCCccccCccccCCceEEEECcHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 99999986432 0 111234443221111000 0 01111 1235678889999 899
Q ss_pred CCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhccccccccccc--ccccCCCCcccchhhhHHHHHHHHHHHhc
Q psy11395 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCG--LGSVKTNLGHLEAASGITGILKIILCLKN 383 (831)
Q Consensus 306 l~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~--vgs~K~~iGH~~~AsG~~~lik~~l~L~~ 383 (831)
++ ||++-.|-.+.. =++++.+.++.... ..++. ...+. +||+.+|+=...|-.++ +.
T Consensus 328 l~---id~~v~Hq~~~~-----il~~v~~~Lg~~l~--------~ek~~~s~~~l~--~GNtssAsi~~~L~~~~---~~ 386 (413)
T 3v7i_A 328 WH---PDVLLAHPGGTR-----VLEYMEQTMPDEWP--------SGLLSYSRDSYT--SGNRGGAAVFDILRRAH---DA 386 (413)
T ss_dssp CC---CCEEEEECSSHH-----HHHHHHHHSCSSCC--------SCSTHHHHHHHT--TCBCGGGHHHHHHHHHH---HH
T ss_pred Cc---eeEEEECCCChH-----HHHHHHHHhCCCCC--------HHHhhccceEec--eeChHHHHHHHHHHHHH---hC
Confidence 87 999999955443 23445555541000 01221 22333 69999998766665554 22
Q ss_pred CccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 384 KKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 384 ~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
+ +. ...+++..+||.|=+-..++|+
T Consensus 387 ~-~~-----------------------------------~Gd~vll~~fG~Glt~~~~ll~ 411 (413)
T 3v7i_A 387 G-QK-----------------------------------TGSRAVLYAAAPGLTATALEGE 411 (413)
T ss_dssp C-CC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred C-CC-----------------------------------CCCEEEEEEECHHHhHhhhheE
Confidence 1 11 1135788899988888888875
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=133.85 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
...|+.+|+.+||++||+++++++ .|++|+... + . ..+..+...++ -|.+.
T Consensus 55 ~sdLa~~Aa~~AL~~AGi~~~DID----~II~gt~t~-q---------------~-------~~A~~va~~Lg--ipafd 105 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNLKKEDID----IFLAGDLLN-Q---------------N-------VTANYVARHLK--IPFLC 105 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCS----EEEEEESSS-S---------------S-------TTHHHHHHHHC--CCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCC-c---------------h-------hHHHHHHHHhC--CCEEE
Confidence 467999999999999999999998 688886532 1 0 02344555554 38999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
|+.+|+|++.||..|..+|++|.++.+||+|+|.+........+.. ..+..+|... ...++||||+||.+.
T Consensus 106 V~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p~-----e~g~q~p~ta----~~t~dGAGA~VL~~~ 176 (347)
T 3lma_A 106 LFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYPT-----EYGGQKPGTA----TSTVTGSGAVVLSQQ 176 (347)
T ss_dssp BCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC-------------------------CCCEEEEEEEESS
T ss_pred ecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCcc-----hhcccCCchh----cEEccceeEEEEEec
Confidence 9999999999999999999999999999999998754322111100 0111222211 224589999999854
Q ss_pred hhhhhCCCceEEEEeeeeeccCCCCCCCCCCC------HHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHH
Q psy11395 258 SVALNDHDNIYAIIKGSAITHNGQSNGLTAPN------PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQG 331 (831)
Q Consensus 258 ~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~------~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~a 331 (831)
. .+.+|...-.|--+ | .+...|. ..+..+.|.+.|+++|++|+|+|+|-.+ |.-++..
T Consensus 177 g----~~p~I~~~t~Gkvv--d---~g~~d~~nmg~amaPaA~~ti~~~l~d~g~~~~d~D~ivtg-------dL~q~g~ 240 (347)
T 3lma_A 177 P----GGIKITSATVGRVI--D---LGITDSQDMGSAMAPAAADTIKQHLEDLGRTPDDYDLILTG-------DLSGVGS 240 (347)
T ss_dssp C----CSEEEEEEECCCCB--C---CSCCCTTCHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEE-------SCHHHHH
T ss_pred C----CCCceeeeeeeeee--c---cCCCCCCCccccchHHHHHHHHHHHHHhCCCHHHcCEEecC-------ChHHHHH
Confidence 2 12223322222111 1 1223332 2445678899999999999999999975 4444443
Q ss_pred --HHHHhhh
Q psy11395 332 --LKNAFHS 338 (831)
Q Consensus 332 --l~~~f~~ 338 (831)
+.+++..
T Consensus 241 ~il~~l~~~ 249 (347)
T 3lma_A 241 PILKDLLKE 249 (347)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 6666654
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.5e-11 Score=134.25 Aligned_cols=172 Identities=15% Similarity=0.226 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcC---CCC-
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYN---FTG- 173 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lg---l~G- 173 (831)
...|+.+|+.+||+++|+++++|+ .|++++.+.++. ....+..|...|+ +.+
T Consensus 73 ~~~La~~Aa~~aL~~agi~~~dId----~li~~T~t~~~~--------------------~ps~a~~v~~~L~~lG~~~~ 128 (478)
T 2p8u_A 73 INSLCMTVVQNLMERNNLSYDCIG----RLEVGTETIIDK--------------------SKSVKTNLMQLFEESGNTDI 128 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE----EEEEECSCCSCS--------------------SSCHHHHHGGGTTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC----EEEEEccCCccc--------------------CccHHHHHHHHHhhcCCCCc
Confidence 468999999999999999988876 588887655431 1235666774444 443
Q ss_pred CccccccccchHHHHHHHHHHHHHcCC--CCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEE
Q psy11395 174 PSLLIDTACSSSLVAVHEALQSIKNGE--SSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251 (831)
Q Consensus 174 ps~tv~taCsSsl~Al~~A~~~I~~G~--~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaa 251 (831)
+++.|..+|++++.||..|+++|++|. ++.|||+|+|.. . |.........||||+|
T Consensus 129 ~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia-~---------------------~~~~~~~~~fGdGA~A 186 (478)
T 2p8u_A 129 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA-V---------------------YATGNARPTGGVGAVA 186 (478)
T ss_dssp BCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE-C---------------------CCSSTTGGGCEEEEEE
T ss_pred eEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee-c---------------------ccCCCCCCcccceeEE
Confidence 788899999999999999999999999 999999999952 1 1111224678999999
Q ss_pred EEecchhhhhhCCCceEEEE----eeeeeccCCCCCCCCCC---------CHH--------HH---HHHHHHHHH-----
Q psy11395 252 LMLKPLSVALNDHDNIYAII----KGSAITHNGQSNGLTAP---------NPI--------QQ---SYLLQKAWN----- 302 (831)
Q Consensus 252 vvL~~~~~A~~~g~~i~a~I----~g~~~~~dg~~~~~~~p---------~~~--------~~---~~~i~~al~----- 302 (831)
+||.+.. ++ ++ .|+.+. +.. .+..| ++. +. .+.+++.++
T Consensus 187 ~Ll~~~~-------~~--~l~~~~~gs~~~-~~~--d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~ 254 (478)
T 2p8u_A 187 LLIGPNA-------PL--IFERGLRGTHMQ-HAY--DFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQK 254 (478)
T ss_dssp EEEESSC-------SE--EECTTCCEEEEC-CCC--SEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCC-------Cc--eEeeccceeccc-chh--heeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9997532 11 12 122111 110 01111 111 11 134566666
Q ss_pred ---HcCCCCCCcceEEecCCCCCCCCHH
Q psy11395 303 ---ESNIDVRSLGYIECHGTGTKLGDPI 327 (831)
Q Consensus 303 ---~Agl~~~dId~ie~HgtGT~~gD~~ 327 (831)
++|++++||||+-.|-.+.++.+.+
T Consensus 255 ~~~~~g~~~~did~~v~H~~~~ki~~~~ 282 (478)
T 2p8u_A 255 EGNDKDFTLNDFGFMIFHSPYCKLVQKS 282 (478)
T ss_dssp HTCCCCCCGGGCSEEEECCSSHHHHHHH
T ss_pred cccccCCChHHcCEEEecCCcHHHHHHH
Confidence 6799999999999998887765554
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=108.88 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=59.3
Q ss_pred hhhcccC-ccccCCcccHhhhCCChHHHHHHHHHHHhHhC-CccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 637 QIKLQIK-SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLD-LSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 637 ~~~l~l~-~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g-~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
.|.-.|. .+.|+++++||++|||||++++|+.+|+++|+ +.++..+||++||+++||++|...+.
T Consensus 33 iW~~vL~~~~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~~~ 99 (110)
T 2cq8_A 33 VWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR 99 (110)
T ss_dssp HHHHHCSSCSCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHHhc
Confidence 4555676 78999999999999999999999999999999 99999999999999999999976554
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-11 Score=105.56 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=58.2
Q ss_pred hhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 637 ~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
.|...|..+.|+.+++||++|+|||.+++|+.+|+++||+.|+..++|+|||+.+|+++|.+..
T Consensus 24 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~ 87 (93)
T 4i4d_A 24 IWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATL 87 (93)
T ss_dssp HHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHc
Confidence 3444566688999999999999999999999999999999999999999999999999997654
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-11 Score=104.71 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=56.6
Q ss_pred hhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 637 ~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
.|.-.|..+.|+++++||++|+|||.+++|+.+|+++||++++..++|++||+++|+++|.+
T Consensus 22 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~ 83 (91)
T 1dny_A 22 IWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT 83 (91)
T ss_dssp HHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHH
Confidence 34445666799999999999999999999999999999999999999999999999999964
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=122.79 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=108.6
Q ss_pred CCCCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCCh
Q psy11395 10 NLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISP 89 (831)
Q Consensus 10 ~~~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~ 89 (831)
.|.++|-|.|+|..+|.-.-+.+++-+.. |. +. .|.. ...++..-.+ .++
T Consensus 1 sm~~~VgI~~~g~y~P~~~v~~~~l~~~~--~~------~~-~~i~--------~~~Gi~~r~~-------------~~~ 50 (460)
T 2wya_A 1 SMPKDVGILALEVYFPAQYVDQTDLEKYN--NV------EA-GKYT--------VGLGQTRMGF-------------CSV 50 (460)
T ss_dssp CCCSSCEEEEEEEECCSEEEEHHHHHHHT--TC------CT-TCCC--------CCCCCCEEEC-------------CCT
T ss_pred CCCCceEEEEEEEECCCeEEcHHHHHHHh--CC------CH-HHHH--------HhhCcEEEEE-------------CCC
Confidence 36778999999999998666777765532 11 11 1210 0001100000 011
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHc
Q psy11395 90 IEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFY 169 (831)
Q Consensus 90 ~ea~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~l 169 (831)
.| ...-|+.+|+.+||+++|+++++|+ -|++++.+.++. ....+..|...|
T Consensus 51 ~E-----~~~~ma~~Aa~~al~~a~i~~~~Id----~ii~aT~t~~~~--------------------~ps~a~~v~~~l 101 (460)
T 2wya_A 51 QE-----DINSLCLTVVQRLMERIQLPWDSVG----RLEVGTETIIDK--------------------SKAVKTVLMELF 101 (460)
T ss_dssp TC-----CHHHHHHHHHHHHHHHHTCCGGGEE----EEEEECSCCSCS--------------------SSCHHHHHGGGT
T ss_pred CC-----CHHHHHHHHHHHHHHHcCCCHHHCC----EEEEEeCCCCCC--------------------CCchHHHHHHHH
Confidence 11 2456999999999999999998887 588888766541 112566788888
Q ss_pred CCCC----CccccccccchHHHHHHHHHHHHHcCCCCEE--EEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcc
Q psy11395 170 NFTG----PSLLIDTACSSSLVAVHEALQSIKNGESSQA--LVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGY 243 (831)
Q Consensus 170 gl~G----ps~tv~taCsSsl~Al~~A~~~I~~G~~d~a--lvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~ 243 (831)
|+.| +++-+..+|++++.||..|.++|++|..+.+ |+++.+.. . +.......
T Consensus 102 ~~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~~-~---------------------~~d~~~~~ 159 (460)
T 2wya_A 102 QDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIA-V---------------------YPSGNARP 159 (460)
T ss_dssp GGGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE-C---------------------CCSSTTGG
T ss_pred hccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEecccc-c---------------------cccccccc
Confidence 7654 4577899999999999999999999987644 44333321 1 11122334
Q ss_pred eecCceEEEEecch
Q psy11395 244 VRGEGAVMLMLKPL 257 (831)
Q Consensus 244 v~gEGaaavvL~~~ 257 (831)
..|+||+++++.+.
T Consensus 160 ~~GdGA~A~l~~~~ 173 (460)
T 2wya_A 160 TGGAGAVAMLIGPK 173 (460)
T ss_dssp GCEEEEEEEEEESS
T ss_pred cCcchHHhhhcccC
Confidence 56999999999753
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-10 Score=97.17 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=55.1
Q ss_pred cCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 642 l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
...+.|+++++||++|+|||++++|..+|+++||++++.+.+|++||+.+|++||.+.+
T Consensus 36 ~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~l 94 (95)
T 2ju1_A 36 DDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL 94 (95)
T ss_dssp CCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH
T ss_pred CChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHc
Confidence 44578999999999999999999999999999999999999999999999999997653
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=94.49 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=56.3
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+..+.|+++++||++|+|||.++++..+|+++||++++...+|++||+.+|++||.+.+
T Consensus 27 l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~~ 87 (88)
T 2afd_A 27 LDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGELY 87 (88)
T ss_dssp HTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHHT
T ss_pred HCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 3555688999999999999999999999999999999999999999999999999997643
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=92.20 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=55.4
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccCh--hhhccCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINS--TKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~--~~lf~~pTi~~la~~l~~ 698 (831)
+.+..+.|+++.+||++|+|||.+++|+.+|+++||++++. ..+|++||+.+|++||.+
T Consensus 24 l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~ 84 (89)
T 2kr5_A 24 SGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLG 84 (89)
T ss_dssp HCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHT
T ss_pred HCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHH
Confidence 45666899999999999999999999999999999999999 999999999999999964
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-09 Score=93.41 Aligned_cols=62 Identities=39% Similarity=0.758 Sum_probs=57.6
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.+..+.|+.+.+||++|+|||.++++..+|+++||+.++...+|++||+.+|++||.+.+.
T Consensus 34 l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~~ 95 (99)
T 2liu_A 34 LYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQILS 95 (99)
T ss_dssp TTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHhh
Confidence 45666899999999999999999999999999999999999999999999999999987654
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-09 Score=132.57 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCceeecceeecCCC-CCHHHHHHHhhcCCcccccCCCCC-CCcCccccCCCCCCCCceeecc
Q psy11395 767 NDDFEISKYIREIPKS-NNLKNFANNLLIGRNCVSKIASTR-WIIDDFYDFRYDNAIGKLICKK 828 (831)
Q Consensus 767 ~~~iaivg~~~r~pga-~~~~~~w~~l~~g~~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~ 828 (831)
.++||||||+|||||+ .++++||++|.+|+|+++++|++| |+.+.||+++++ .+|+.|+++
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~-~~~~~~~~~ 67 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPD-NPGTSYVDK 67 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTT-STTCBSCCE
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccc-cCCCcccce
Confidence 4789999999999995 999999999999999999999999 999999999998 999988875
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=86.68 Aligned_cols=60 Identities=23% Similarity=0.435 Sum_probs=55.6
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.|+++.+|| ++|+|||.+++|+.+|+++||++++...+++++|++++++|+.+.
T Consensus 16 l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 76 (78)
T 1l0i_A 16 LGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGH 76 (78)
T ss_dssp HTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred hCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 456678999999997 999999999999999999999999999999999999999999653
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=85.61 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=55.4
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.|+++.+|| ++|+|||.+++++.+|+++||++++...+++++|++++++|+.+.
T Consensus 19 l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 79 (81)
T 2lol_A 19 LNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKER 79 (81)
T ss_dssp SCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHH
T ss_pred HCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 456667899999996 999999999999999999999999999999999999999999754
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=84.76 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=55.9
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.++++.+| +++|+|||.+++++.+|+++||++++...+++++|+++|++++.+.
T Consensus 14 l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~ 74 (77)
T 2ehs_A 14 LGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEK 74 (77)
T ss_dssp HCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHH
T ss_pred hCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHH
Confidence 45666789999999 9999999999999999999999999999999999999999999764
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-08 Score=88.35 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=53.9
Q ss_pred cccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 645 ~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.|+++.+|+++|+|||.+++|+.+|+++||++|+...+++++|+++|++||.+.+.
T Consensus 26 ~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 82 (95)
T 1nq4_A 26 GGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT 82 (95)
T ss_dssp CSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999987654
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=87.10 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=56.4
Q ss_pred cccCcc-ccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSE-QFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~-~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.+..+ .|+++.+|+++|+|||.+++|+.+|+++||++++...+++++|++++++|+.+.+.
T Consensus 17 l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 79 (82)
T 2ava_A 17 LALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLE 79 (82)
T ss_dssp TTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHH
T ss_pred hCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHHh
Confidence 345555 89999999999999999999999999999999999999999999999999976553
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=84.47 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=55.3
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.|+++.+|| ++|+|||.+++|+.+|+++||++++..++++++|++++++||.+.
T Consensus 20 l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2cnr_A 20 AGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 80 (82)
T ss_dssp SCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHS
T ss_pred hCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHH
Confidence 456667899999996 999999999999999999999999999999999999999999653
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-08 Score=84.47 Aligned_cols=60 Identities=25% Similarity=0.400 Sum_probs=55.9
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.|+++.+| +++|+|||.+++|+.+|+++||+.++...+++++|++++++|+.+.
T Consensus 18 l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 78 (80)
T 1x3o_A 18 LQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAK 78 (80)
T ss_dssp HTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred hCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHH
Confidence 35667789999999 9999999999999999999999999999999999999999999764
|
| >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-08 Score=84.05 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=56.7
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+..+.|+++.+|+ ++|+|||.+++|+.+|+++||++++...+++++|+++|++||.+.+
T Consensus 18 l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (81)
T 3gzm_A 18 LSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN 79 (81)
T ss_dssp HTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred hCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHh
Confidence 466778999999995 9999999999999999999999999999999999999999997654
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-08 Score=86.51 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=54.2
Q ss_pred cccCcc-ccC--CcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSE-QFD--DDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~-~i~--~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.+..+ .|+ ++.+|+++|+|||.+++|+.+|+++||++++...+++++|++++++||.+.
T Consensus 17 l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 79 (83)
T 1or5_A 17 AGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 79 (83)
T ss_dssp SCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTC
T ss_pred hCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHH
Confidence 345555 788 999999999999999999999999999999999999999999999999643
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.2e-08 Score=87.22 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=56.3
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+..+.|+++.+|| ++|+|||.+++|+.+|+++||++++..++++++|+++|++||.+..
T Consensus 28 l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 89 (99)
T 2dnw_A 28 DKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKK 89 (99)
T ss_dssp TTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHHC
T ss_pred hCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHHh
Confidence 346678999999996 9999999999999999999999999999999999999999997654
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=84.20 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=54.6
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
+.+..+.|+++.+| +++|+|||.+++|+.+|+++||++++...+++++|++++++|+.+
T Consensus 20 l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (81)
T 1f80_D 20 LGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN 79 (81)
T ss_dssp SSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC-
T ss_pred HCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHh
Confidence 45667899999999 999999999999999999999999999999999999999999854
|
| >4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-08 Score=106.85 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCeEEEeccCCHhHHHHHHHHHHHHHhcccccCccHHHHHHHHH-hccccCCceEEEEeCCHHHHHHHHHHHH
Q psy11395 467 LPLIFVLSAKTKSQLLIYVKKYIEWLNNKESLNISLRDLTLQLQ-KGRQAMNCRLALVIFNRDDLLSQLNFFY 538 (831)
Q Consensus 467 ~~~l~~lSa~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~tl~-~~r~~~~~r~a~v~~~~~~l~~~l~~~~ 538 (831)
.|+||+|||+|+++|++++++|.+||+.++ ...|.|+||||+ .+|.+|+||+++|++|.+||.++|+.+.
T Consensus 2 ~~~ll~lSA~s~~aL~~~~~~l~~~l~~~~--~~~l~dla~tl~~~rr~~~~~R~avva~~~~~l~~~L~~~~ 72 (401)
T 4amm_A 2 DHELVVCGAPDAAALTGLLTRVRAAATALS--RPELTDLAAGLAAAHRGDVPARFAAAVRDADGLVAALDRAL 72 (401)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHSCSSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHhhccccCCCceEEEEECCHHHHHHHHHHHH
Confidence 368999999999999999999999998764 346999999999 5788889999999999999999998764
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.4e-08 Score=84.05 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=53.0
Q ss_pred ccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 646 QFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 646 ~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
.|+++.+|+++|+|||.+++|+.+|+++||++++...+++++|++++++|+.+...
T Consensus 28 ~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 83 (86)
T 1af8_A 28 GDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALA 83 (86)
T ss_dssp TCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHHH
T ss_pred cCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999999999999999999999987653
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-08 Score=97.68 Aligned_cols=62 Identities=24% Similarity=0.604 Sum_probs=57.2
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.+..+.|+.+++||++|+|||.+++|+.+|+++||++|+...+|++|||++|++||.+...
T Consensus 143 l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~~ 204 (212)
T 2l22_A 143 LFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRVQ 204 (212)
T ss_dssp HSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHHC
T ss_pred HCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHhc
Confidence 45666899999999999999999999999999999999999999999999999999976543
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-08 Score=99.10 Aligned_cols=61 Identities=38% Similarity=0.758 Sum_probs=57.1
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.+..++|+++.+||+||+|||++++|+.+|+++||++|+.+.+|++||+.+|++||.+..
T Consensus 39 l~~~~~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l~~~~~~~~~Ti~~la~~l~~~~ 99 (212)
T 2l22_A 39 LYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQL 99 (212)
T ss_dssp TTCCTTSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCCCTTHHHHCCBHHHHHHHHHTTS
T ss_pred HCcCHHHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHhc
Confidence 4667789999999999999999999999999999999999999999999999999997654
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-08 Score=83.24 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=53.0
Q ss_pred cccC-ccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 640 LQIK-SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~-~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
+.+. .+.|+++.+|++||+|||++++|.++|++.||+.||.+.+|. +|+.+|++++..
T Consensus 19 Lg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~~v~~ 77 (91)
T 2cg5_B 19 LGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSK 77 (91)
T ss_dssp TTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHC
T ss_pred HCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHHHHhc
Confidence 4554 488999999999999999999999999999999999999988 599999999864
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=80.75 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=55.7
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.+..+.|+++.+| .++|+|||.+++|+..|+++||++++...+++++|++++++|+.+.
T Consensus 20 l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2qnw_A 20 LGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKA 80 (82)
T ss_dssp HCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred HCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHh
Confidence 45677899999999 5999999999999999999999999999999999999999999754
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=81.15 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=56.1
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.+..+.|+++.+| .++|+|||.+++|+..|+++||++++...+++++|++++++|+.+.
T Consensus 22 l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 22 LDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp HCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred hCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 45667899999999 9999999999999999999999999999999999999999999764
|
| >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.5e-08 Score=86.64 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=56.0
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.+..++|+++.+|+ +||+|||.+++|+.+|+++||++++..++++++|+++|++||.+.
T Consensus 35 l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 35 LGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 95 (97)
T ss_dssp SCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC
T ss_pred HCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 467788999999996 999999999999999999999999999999999999999999753
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-08 Score=106.51 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=56.7
Q ss_pred hhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 637 ~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
.|...|..+.|+.+++||++|+|||++++|+.+|+++||++|+..++|++||+++|+++|.+.
T Consensus 19 ~~~~~l~~~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~ 81 (329)
T 3tej_A 19 AFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAE 81 (329)
T ss_dssp HHHHHHTC-CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSC
T ss_pred HHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhh
Confidence 444466777899999999999999999999999999999999999999999999999999743
|
| >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=83.37 Aligned_cols=62 Identities=16% Similarity=0.392 Sum_probs=57.7
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.++.+.|+++.+|.+||+|||.+++|+..|+++||++++...+++++|+++|++||.+.+.
T Consensus 30 l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~~ 91 (100)
T 1vku_A 30 MGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE 91 (100)
T ss_dssp TCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHHH
T ss_pred HCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999987654
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=86.78 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=57.7
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhhh
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISK 702 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~~ 702 (831)
+.+..+.|+++.+|+ ++|+|||.+++|+..|+++||++++...+++++|+++|++||.+....
T Consensus 20 l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~~ 83 (115)
T 1klp_A 20 TGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEEE 83 (115)
T ss_dssp TCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHSS
T ss_pred hCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHHcc
Confidence 456678899999995 999999999999999999999999999999999999999999876643
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-08 Score=117.98 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred chhhcccCccccCCcccHhhhCCChHHHHHHHHHHHh-HhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 636 TQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINS-QLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 636 ~~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~-~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
..|...|..+.++.+++||++|||||.+++|+.+|++ .||++|+..++|++|||++||++|.+.
T Consensus 531 ~iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~ 595 (620)
T 4dg8_A 531 QLWSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSH 595 (620)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHhCCCCCCCCCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhc
Confidence 3455567778899999999999999999999999998 899999999999999999999999753
|
| >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=82.65 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=54.5
Q ss_pred CccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhc--cCCCHHHHHHHHHHHhh
Q psy11395 643 KSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 643 ~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf--~~pTi~~la~~l~~~~~ 701 (831)
..+.|+++.+|+++|+|||.+++|+..|+++||++|+..+++ +++|+..+++++.....
T Consensus 40 ~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~v~~~~~ 100 (105)
T 2jq4_A 40 PVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLILD 100 (105)
T ss_dssp CGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHHH
T ss_pred CcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999999998 89999999999976443
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.3e-08 Score=110.58 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=57.0
Q ss_pred hhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 637 ~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
.|.-.|..+.|+.+++||++|||||.+++++.+++++||+.|+..++|++||+++|++++..
T Consensus 18 iw~~vL~~~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~ 79 (520)
T 2jgp_A 18 VWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEE 79 (520)
T ss_dssp HHHHHHTCSCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHh
Confidence 44456667799999999999999999999999999999999999999999999999999864
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-08 Score=85.18 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=55.7
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++.+.|+++.+| +++|+|||.+++|+.+|+++||++++...+++++|++++++|+.+.
T Consensus 17 l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 77 (79)
T 2l3v_A 17 LGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKA 77 (79)
T ss_dssp TCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHT
T ss_pred hCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 45666789999999 9999999999999999999999999999999999999999999753
|
| >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-07 Score=82.51 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=55.5
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhh-----------ccCCCHHHHHHHHHHHhhhh
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKI-----------YDYPTLNKFFKFIMSQISKK 703 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~l-----------f~~pTi~~la~~l~~~~~~~ 703 (831)
+.++.+.|+++.+| .++|+|||.+++|+..|+++||++++...+ |+|||++++++||.+.+...
T Consensus 16 l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~~i~~~~~~~ 91 (101)
T 2kw2_A 16 CDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAARIDELVAAK 91 (101)
T ss_dssp HCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHHHHHHHHHHH
T ss_pred hCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHHHHHHHhccc
Confidence 45677899999998 599999999999999999999999999874 66667999999998766543
|
| >4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-07 Score=80.59 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=55.1
Q ss_pred cccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
+.++.++|+++.+| .++|+|||.+++|+..|+++||++++..++++.+|++++++||.+
T Consensus 39 l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~ 98 (101)
T 4dxe_H 39 LGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINS 98 (101)
T ss_dssp TCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC-
T ss_pred HCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHH
Confidence 46677899999999 899999999999999999999999999999999999999999854
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-07 Score=109.05 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=50.5
Q ss_pred ccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHH
Q psy11395 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698 (831)
Q Consensus 644 ~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~ 698 (831)
.+.++.+++||++|||||.+++|+.+|++ ++.+|+..++|+||||++|+++|.+
T Consensus 561 ~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~~la~~l~~ 614 (617)
T 3rg2_A 561 SDEPFDDDNLIDYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSR 614 (617)
T ss_dssp TCCCCTTSCGGGGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHHHHHHHHCC
T ss_pred CCCCCCCCChhhcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHHHHHHHHHh
Confidence 56899999999999999999999999987 6889999999999999999999864
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.64 E-value=8.1e-08 Score=85.93 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=56.5
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+.++.++|+++.+|.+||+|||.+++|+..|+++||++|+..++++++|+++|++||.+.+
T Consensus 39 l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~ 99 (103)
T 2lte_A 39 SGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHR 99 (103)
Confidence 3566789999999999999999999999999999999999999999999999999997654
|
| >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-07 Score=78.26 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=55.1
Q ss_pred ccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 641 QIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 641 ~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
.+..+.|+++.+| .++|+|||.+++|+..|+++||++++...+++++|+++|++||.+.+
T Consensus 25 ~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 85 (88)
T 2l4b_A 25 DEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASKS 85 (88)
T ss_dssp HHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHHHHHS
T ss_pred CCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHhh
Confidence 3456789999999 69999999999999999999999999999999999999999997654
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-07 Score=117.80 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=57.1
Q ss_pred hhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 638 IKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 638 ~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
|...|..+.|+.+++||++|||||++++|+.+|+++||++|+..++|++|||++||++|...
T Consensus 981 ~~~vL~~~~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~ 1042 (1304)
T 2vsq_A 981 WSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042 (1304)
T ss_dssp HHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHT
T ss_pred HHHHcCCCccCCCCCHHHhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHhc
Confidence 34456778999999999999999999999999999999999999999999999999999753
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-07 Score=108.67 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=0.0
Q ss_pred CccchhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 633 SDDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 633 ~~~~~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
.....|...|..+.|+.+++||++|||||.+++|+.+|++ ||+.|++.++|++|||++||++|.+.
T Consensus 49 ~l~~~w~~~l~~~~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~ 114 (508)
T 4f6l_B 49 TFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQN 114 (508)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCCCCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhh
Confidence 3344566677778999999999999999999999999986 99999999999999999999999754
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-07 Score=113.83 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCceeecceeecCC-CCCHHHHHHHhhcCCcccccCCCCC-CC
Q psy11395 768 DDFEISKYIREIPK-SNNLKNFANNLLIGRNCVSKIASTR-WI 808 (831)
Q Consensus 768 ~~iaivg~~~r~pg-a~~~~~~w~~l~~g~~~~~~~p~~r-~~ 808 (831)
++||||||+||||| +.++++||++|.+|+++++++|.+| |+
T Consensus 39 ~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~ 81 (917)
T 2hg4_A 39 EPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWE 81 (917)
T ss_dssp CCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCC
T ss_pred CCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccC
Confidence 78999999999997 6899999999999999999999999 85
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=106.61 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=40.9
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.++||||||+|||||+.++++||++|.+|+|+++++| +||+...|+
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~-~~~~~~~~~ 48 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDD-RRWKAGLYG 48 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSS-SSSCTTGGG
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCC-ccccccccc
Confidence 3799999999999999999999999999999999975 689864443
|
| >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-06 Score=72.58 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=52.9
Q ss_pred ccCccccCCcccHhhhC-CChHHHHHHHHHHHhHhCCccChhhhc--cCCCHHHHHHHHHH
Q psy11395 641 QIKSEQFDDDAIFIDMG-LDSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFIMS 698 (831)
Q Consensus 641 ~l~~~~i~~~~~f~~lG-~dSl~a~~l~~~i~~~~g~~l~~~~lf--~~pTi~~la~~l~~ 698 (831)
......+.++.+|+++| +|||.+++|+..|+++||++++..++. ...|++++++||.+
T Consensus 18 ~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~ 78 (80)
T 1dv5_A 18 GSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQ 78 (80)
T ss_dssp TSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHT
T ss_pred CCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHH
Confidence 34456789999999999 999999999999999999999999988 89999999999964
|
| >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.6e-06 Score=73.55 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=54.6
Q ss_pred CccccCCcccHh------hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 643 KSEQFDDDAIFI------DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 643 ~~~~i~~~~~f~------~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
..+.|.++.+|+ +||+|||..++|+..|+++||+.|+..++....|+++|++||.+...
T Consensus 34 ~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 98 (107)
T 3ce7_A 34 KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSERA 98 (107)
T ss_dssp TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHH
T ss_pred CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHHHHHHH
Confidence 567899999995 88999999999999999999999999999999999999999987654
|
| >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-07 Score=80.28 Aligned_cols=59 Identities=8% Similarity=0.212 Sum_probs=23.2
Q ss_pred cCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccC---hhhhccCCCHHHHHHHHHHHh
Q psy11395 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSIN---STKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 642 l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~---~~~lf~~pTi~~la~~l~~~~ 700 (831)
+..+.|+++.+|.++|+|||.+++|+..|+++||++++ ...+++++|++++++||.+.+
T Consensus 27 ~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~~i~~~~ 88 (92)
T 1fh1_A 27 VALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAVRGLL 88 (92)
T ss_dssp -------------------CTTTTHHHHHHHC-----------------CTTTSTHHHHC--
T ss_pred CCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHHHHHHHh
Confidence 44558999999999999999999999999999999999 788999999999999997654
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-05 Score=70.05 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=54.2
Q ss_pred hcccCccccCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChh-hhccCCCHHHHHHHHHHHhh
Q psy11395 639 KLQIKSEQFDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINST-KIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 639 ~l~l~~~~i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~-~lf~~pTi~~la~~l~~~~~ 701 (831)
++.++.+.|.++.+| -|||+|||.+++|+..++++||++++.. .-|...|++++++||.+...
T Consensus 26 ~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vdyI~~~~~ 90 (102)
T 2l9f_A 26 RAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAEALEARER 90 (102)
T ss_dssp HTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHHHHHHHHH
T ss_pred HHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHHHHHHhhc
Confidence 467899999999997 6899999999999999999999998765 22455999999999987554
|
| >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.7e-06 Score=74.08 Aligned_cols=55 Identities=15% Similarity=0.341 Sum_probs=51.5
Q ss_pred cCCcccH-hhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 647 FDDDAIF-IDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 647 i~~~~~f-~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
|+++.+| .++|+|||..++|+..|+++||++|+..++.+..|+++|++||.+.+.
T Consensus 45 I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l~ 100 (113)
T 2cgq_A 45 ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWFP 100 (113)
T ss_dssp CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC-
T ss_pred CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999999 699999999999999999999999999999999999999999986554
|
| >2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=71.51 Aligned_cols=60 Identities=17% Similarity=0.398 Sum_probs=53.2
Q ss_pred ccC--ccccCCcccHh-hhCC-ChHHHHHHHHHHHhHhCCccChhhhc--cCCCHHHHHHHHHHHh
Q psy11395 641 QIK--SEQFDDDAIFI-DMGL-DSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFIMSQI 700 (831)
Q Consensus 641 ~l~--~~~i~~~~~f~-~lG~-dSl~a~~l~~~i~~~~g~~l~~~~lf--~~pTi~~la~~l~~~~ 700 (831)
.++ .+.|.++.+|+ ++|+ |||..++|+..|+++||++++..++. ...|++++++||.+..
T Consensus 38 ~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~~ 103 (105)
T 2lki_A 38 NLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKL 103 (105)
T ss_dssp TCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHHT
T ss_pred CCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHHh
Confidence 445 67899999998 5999 99999999999999999999999954 7999999999997643
|
| >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.8e-06 Score=86.68 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=52.3
Q ss_pred cCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHH
Q psy11395 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIM 697 (831)
Q Consensus 642 l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~ 697 (831)
+..+.|+.+++|++||+||+.+++|+.+++++ |++++.+++|++||+++++++|.
T Consensus 229 ~~~~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~~~~~~~l~~~ptl~~~~~~l~ 283 (287)
T 2fq1_A 229 DESDEPFDDDNLIDYGLDSVRMMALAARWRKV-HGDIDFVMLAKNPTIDAWWKLLS 283 (287)
T ss_dssp CCSSCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CTTCCHHHHHTSCSHHHHHHHHH
T ss_pred CCHhhcCCCCCHHHhCccHHHHHHHHHHHHHc-CCCCCHHHHHhCccHHHHHHHHH
Confidence 56678999999999999999999999999988 99999999999999999999985
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.8e-05 Score=106.52 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=40.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
++||||||+|||||+.++++||++|.+|+|++++. ++||+.+.+
T Consensus 2 ~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~-~~~~~~~~~ 45 (2512)
T 2vz8_A 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTAD-DRRWKAGLY 45 (2512)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEEC-SSSSCTTGG
T ss_pred CCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCC-Ccccccccc
Confidence 58999999999999999999999999999999995 578997643
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=3.9e-05 Score=86.07 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=37.3
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCC
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWI 808 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~ 808 (831)
.++|||+||+|++|++.++++||++|.+|+++++++| ||+
T Consensus 11 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~ 50 (416)
T 2wge_A 11 FPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALE--DEF 50 (416)
T ss_dssp SCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECC--CHH
T ss_pred CCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCC--ccc
Confidence 3689999999999999999999999999999999998 665
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=97.44 E-value=7e-05 Score=84.35 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
.++|+|+||+|++|++.++++||++|.+|+++++++| ||+...+
T Consensus 17 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~ 60 (427)
T 3ho9_A 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID--HFDTSAY 60 (427)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCCTTC
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCC--ccccccC
Confidence 4889999999999999999999999999999999997 6776554
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=97.36 E-value=6.6e-05 Score=84.66 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=35.8
Q ss_pred CceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCC
Q psy11395 769 DFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWI 808 (831)
Q Consensus 769 ~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~ 808 (831)
+|||+||+|++|++.++++||++|.+|+++++++| ||+
T Consensus 2 ~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~ 39 (431)
T 2ix4_A 2 RVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLT--LDD 39 (431)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECC--GGG
T ss_pred cEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCC--hhh
Confidence 69999999999999999999999999999999998 565
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.36 E-value=7.6e-05 Score=84.17 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=37.3
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCC
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWI 808 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~ 808 (831)
.++|+|+||+|++|++.++++||++|.+|+++++++| ||+
T Consensus 27 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~ 66 (434)
T 2gp6_A 27 FPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLD--DPF 66 (434)
T ss_dssp SCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECC--CHH
T ss_pred CCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCC--ccc
Confidence 4689999999999999999999999999999999998 565
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=82.86 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
.+|+|+||+|++|++.++++||++|.+|++++++++ ||+...+
T Consensus 28 ~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~ 70 (437)
T 2gqd_A 28 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKIT--RIDTEPY 70 (437)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCCTTS
T ss_pred CCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCC--ccccccC
Confidence 689999999999999999999999999999999986 6765544
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=97.32 E-value=8.6e-05 Score=83.85 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=37.6
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDD 811 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~ 811 (831)
++|+|+||+|++|++.++++||++|.+|+++++++| ||+.+.
T Consensus 21 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~ 62 (438)
T 2iwz_A 21 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLV--GEEYKS 62 (438)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECC--SGGGTT
T ss_pred CCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCC--chhccc
Confidence 689999999999999999999999999999999998 455443
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=8.7e-05 Score=83.47 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||+|++|++.++++||++|.+|++++++++ ||+...++
T Consensus 3 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~~ 46 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS--FFDPSPYR 46 (424)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECC--SSCCTTSS
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCC--CcccccCC
Confidence 479999999999999999999999999999999986 67765543
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=9.3e-05 Score=82.99 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 767 NDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 767 ~~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
.++|+|+||+|++|++.++++||++|.+|+++++++| ||+...|
T Consensus 8 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~ 51 (415)
T 1tqy_B 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT--RFDVSRY 51 (415)
T ss_dssp --CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECT--TTTGGGS
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECC--cccccCC
Confidence 3789999999999999999999999999999999997 7876543
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00018 Score=80.62 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||+|++|++.++++||++|.+|++++++++ ||+...++
T Consensus 7 ~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~~ 50 (416)
T 1e5m_A 7 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPIT--RFDASDQA 50 (416)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCCTTSS
T ss_pred CCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCC--ccccccCc
Confidence 579999999999999999999999999999999986 67765543
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00014 Score=81.42 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||+|++|++.++++||++|.+|++++++++ ||+...++
T Consensus 2 ~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~--~~~~~~~~ 45 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPIT--RFDASALP 45 (408)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECC--SSCCTTSS
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeecc--ccCcccCc
Confidence 369999999999999999999999999999999986 67765543
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=80.78 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=39.0
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~ 812 (831)
++|+|+||+|++|++.++++||++|.+|+++++++| ||+...+
T Consensus 23 ~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~ 65 (430)
T 1ox0_A 23 NRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGIT--KFDHSDF 65 (430)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECC--SSCCTTS
T ss_pred CCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCC--cccccCC
Confidence 679999999999999999999999999999999998 6776554
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00016 Score=80.73 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=36.2
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWII 809 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~ 809 (831)
.+|+|+||+|++|++.++++||++|.+|+++++++| ||+.
T Consensus 2 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~--~~~~ 41 (406)
T 2vba_A 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQ--ELKD 41 (406)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECH--HHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCC--cccc
Confidence 469999999999999999999999999999999987 4543
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=77.84 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||+|++|++.++++||++|.+|++++++++ ||+.+.++
T Consensus 4 ~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~--~~~~~~~~ 47 (413)
T 3o04_A 4 RRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMT--RLNPDDFP 47 (413)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCGGGSS
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCC--ccccccCc
Confidence 679999999999999999999999999999999996 56655443
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00023 Score=80.61 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=38.9
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|+|+||+|++|++.++++||++|.+|+++++++| ||+.+.++
T Consensus 24 ~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~--~~~~~~~~ 67 (451)
T 4ddo_A 24 LRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLG--DDIAGELS 67 (451)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECC--HHHHTTSS
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCC--cccccccc
Confidence 689999999999999999999999999999999997 56554443
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00033 Score=78.80 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=35.4
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
.+|+|+||+|++|++.++++||++|.+|+++++++|.
T Consensus 23 ~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~ 59 (428)
T 3mqd_A 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEE 59 (428)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHH
T ss_pred CCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCc
Confidence 6899999999999999999999999999999999984
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00066 Score=75.98 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=35.5
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
.+|+|+||+|++|++.++++||++|.+|+++++++|.
T Consensus 6 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~ 42 (412)
T 4ewg_A 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPD 42 (412)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGG
T ss_pred CEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCc
Confidence 6899999999999999999999999999999999985
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0032 Score=70.66 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
..++|.||++..|.+.++++||++|.+|+++|+++| ||+.+.++
T Consensus 10 ~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~--~~~~~~~~ 53 (428)
T 3kzu_A 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVT--EFEVDDLA 53 (428)
T ss_dssp CCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECC--SSCCTTSS
T ss_pred cceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCC--ccccccCc
Confidence 679999999999999999999999999999999997 67766654
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.00088 Score=71.75 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHH
Q psy11395 657 GLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFK 694 (831)
Q Consensus 657 G~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~ 694 (831)
|||||++++|+++|+++||++|++.++|++||+..|+.
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~~ 38 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLMR 38 (316)
T ss_dssp -------------------------CCCCCTTSCSEEE
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeEE
Confidence 89999999999999999999999999999999988754
|
| >3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.05 Score=61.89 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcccccccccc----cccccCCCCcc
Q psy11395 574 FKKIAILWQSGININWSLIDKK----NIRISLPTYPF 606 (831)
Q Consensus 574 l~~la~~~~~G~~idw~~l~~~----~~~v~LP~ypf 606 (831)
++.|+++|+.|..|||..+|.. .+++.||+|||
T Consensus 455 l~al~~L~~~G~~vdw~~~~~~~~~~~~~~~LP~Y~f 491 (491)
T 3tzy_A 455 VSTMAQLYVYGHDLDIRTLFSRASGPQDYANIPPTRF 491 (491)
T ss_dssp HHHHHHHHHTTCSCCGGGGSCCCSSGGGSCCCCC---
T ss_pred HHHHHHHHHCCCCCChHHHCCCCCCCCCcCCCCCCCC
Confidence 4678999999999999999762 35689999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 831 | ||||
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 2e-65 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 8e-57 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 3e-49 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 8e-48 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 2e-47 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 2e-42 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 8e-38 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 2e-34 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 2e-33 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 2e-33 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 1e-32 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 2e-32 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 7e-30 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 2e-27 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 2e-26 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 8e-24 | |
| d1or5a_ | 82 | a.28.1.1 (A:) Frenolicin polyketide synthase acyl | 3e-07 | |
| d2af8a_ | 86 | a.28.1.1 (A:) Actinorhodin polyketide synthase acy | 2e-06 | |
| d1nq4a_ | 95 | a.28.1.1 (A:) Oxytetracycline polyketide synthase | 2e-05 | |
| d2gdwa1 | 76 | a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), | 3e-05 | |
| d1f80d_ | 74 | a.28.1.1 (D:) Acyl carrier protein {Bacillus subti | 3e-04 | |
| d2pnga1 | 76 | a.28.1.1 (A:1-76) Type I fatty acid synthase ACP d | 4e-04 | |
| d1dv5a_ | 80 | a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactob | 8e-04 | |
| d1klpa_ | 115 | a.28.1.1 (A:) Acyl carrier protein {Mycobacterium | 0.002 | |
| d1bi5a1 | 235 | c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Med | 0.003 |
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 216 bits (551), Expect = 2e-65
Identities = 57/262 (21%), Positives = 92/262 (35%), Gaps = 27/262 (10%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + GL P G F K G S + + +R+ D I
Sbjct: 2 RRVVVTGLGALTPIG-VGQEAFHKAQLAGKSGVRPI--TRF------DASALPVRIAA-- 50
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
E P + E +D + L + +EDAG L G +G
Sbjct: 51 -----EVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTG 105
Query: 133 GSDYTRLLSDYIKIP------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
+ ++ + + I+ Y FTGPS + TAC++
Sbjct: 106 IGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGA 165
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
A+ AL+ I+ GE+ L GG + P A+ LS + + F + D
Sbjct: 166 DALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V GEGA +L+L+ A
Sbjct: 226 GFVMGEGAGVLVLEAYEHAKKR 247
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 193 bits (490), Expect = 8e-57
Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 26/262 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + GL P G NT+ WK L G S I + + F
Sbjct: 2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLI--DHFDTS--------AYATKFAG 50
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+KD C D K E MD + + + ++D+G + ++ + + G IG+
Sbjct: 51 LVKDFNCEDIISRK----EQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSG 106
Query: 133 GSDYT------RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
L + ++ + ++A ++ Y GPS+ I TA +S +
Sbjct: 107 IGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGV 166
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
+ A + I G++ + GG P + A LS + +DK D
Sbjct: 167 HNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERD 226
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V G+GA ML+L+ A
Sbjct: 227 GFVLGDGAGMLVLEEYEHAKKR 248
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 172 bits (436), Expect = 3e-49
Identities = 56/262 (21%), Positives = 98/262 (37%), Gaps = 26/262 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K + + GL P G NTL +W+ L +G + I + +R+ +
Sbjct: 2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPI--TRFDAS------------DQAC 46
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ EA+ MD + S + I DA ++L+ GV IG
Sbjct: 47 RFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTG 106
Query: 133 GSDYTRLLSDYIKIP------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
L + + + + + GP+ TAC++
Sbjct: 107 IGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGS 166
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
A+ +A + ++NG + + GG + P + + A LS + FDK+ D
Sbjct: 167 NAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 226
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V GEG+ +L+L+ L AL
Sbjct: 227 GFVMGEGSGILILEELESALAR 248
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 168 bits (426), Expect = 8e-48
Identities = 53/261 (20%), Positives = 87/261 (33%), Gaps = 25/261 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + G P G NT +FW L G I + + +F
Sbjct: 9 NRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHS--------------DFDV 53
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ D L + + + A D L+ GV + +
Sbjct: 54 HNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASG 113
Query: 133 GSDYTRLLSDYIKI------PVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
+ +++ V + + ++ + G I+TACSSS
Sbjct: 114 IGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSN 173
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKTFDKNADG 242
A+ +A +SIK G LVGG + P + LS FDK+ +G
Sbjct: 174 DAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNG 233
Query: 243 YVRGEGAVMLMLKPLSVALND 263
+V GEG+ ML+L+ L A
Sbjct: 234 FVMGEGSGMLVLESLEHAEKR 254
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 165 bits (418), Expect = 2e-47
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 21/217 (9%)
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN 289
+ + FD DG+V EGA M +L+ AL I+A I G A N +
Sbjct: 4 EHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKAD 63
Query: 290 PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
+ + ++ A +ES D + YI HG+GT+ D E K A
Sbjct: 64 GREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALG----------EH 113
Query: 350 YEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYII 409
+ + S+K+ +GH A G I +L L++ +P + N + LD Y+
Sbjct: 114 ARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLD----YVP 169
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
++ KLR G GG + +VL +
Sbjct: 170 LEARER-------KLRSVLTVGSGFGGFQSAMVLRDA 199
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 153 bits (387), Expect = 2e-42
Identities = 48/273 (17%), Positives = 99/273 (36%), Gaps = 21/273 (7%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN--- 69
+ + + GL P G + W+ L G I L D + K +
Sbjct: 1 RRVVVTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTLDDL-KMKSFDEETKLYTFDQLS 58
Query: 70 -----FGAFLKDIECFDAPFFKISPIEAESMDPQQRI----LLELSWKTIEDAGYDSSKL 120
F + + FD + S A + L + W E+ + + +
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 121 SGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
S G+ + +L+ + ++ + + + +S Y F GP+ T
Sbjct: 119 SI-GGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICK 234
AC++ ++ +A + I+ G++ + GG + + + ++ LS +
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNI 267
FD + DG+V GEG+ +++L+ A I
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 136 bits (343), Expect = 8e-38
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 20/179 (11%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IYA + G ++ + N + + A ++ I+ +GY+ HGT T GD
Sbjct: 2 IYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E Q +K F + + S K+ GHL A+G + IL L+++ +
Sbjct: 62 AEAQAVKTIFG----------EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAV 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
P ++N N D + + + + +SFG GGTN ++ +
Sbjct: 112 PPTINLDN----------PDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 130 bits (326), Expect = 2e-34
Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 15/261 (5%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K I GL G N + L++G S I E + + + K G
Sbjct: 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKD-SGMRSHVWGNVKLDTTGL 59
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ + F + + + E L +++ G + GS GA
Sbjct: 60 IDRKVVRFMSDASIYAFLSME-QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 133 GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEA 192
R L V + + ++ ++ + G + I +AC++S + A
Sbjct: 119 AMRGPRGLK-----AVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 193 LQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDKNADGYVRG 246
++ I+ G+ GG + + G LS + +T+D + DG+V
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 247 EGAVMLMLKPLSVALNDHDNI 267
G M++++ L AL +I
Sbjct: 233 GGGGMVVVEELEHALARGAHI 253
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 124 bits (311), Expect = 2e-33
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 21/180 (11%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IY + G A+T + P+ + + A +S + + YI HGT T D
Sbjct: 2 IYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E + +K A N + S K+ GHL SG + ++ + K+
Sbjct: 62 TETRAIKQALG----------NHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKV 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
P ++N N + LD + +A +SFG GG N + +Y
Sbjct: 112 PPTINLENPDPECDLD-----------YVPGQSRALIVDVALSNSFGFGGHNVTLAFKKY 160
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 125 bits (313), Expect = 2e-33
Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 27/218 (12%)
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDN-IYAIIKGSAITHNGQSNGLTAP 288
D FD+ A GYV GEG +L+L+ + A + Y + G A T + +
Sbjct: 3 DRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFD---PAPGSG 59
Query: 289 NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKN 348
P ++ A N++ + + G G D E + + F
Sbjct: 60 RPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFG----------- 108
Query: 349 FYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
E + KT G L + G ++ ++ L+ + + ++ + +D +
Sbjct: 109 -REGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID----LV 163
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + R A V + G G N+ VL +
Sbjct: 164 LGEPRST-------APRTALVLARGRWGFNSAAVLRRF 194
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 121 bits (305), Expect = 1e-32
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTGTKLGD 325
YA + G ++ + + +T P + +L +A +S + + Y+ H T T +GD
Sbjct: 1 YAELCGYGMSGDA--HHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGD 58
Query: 326 PIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKK 385
+E + +K F S K GHL A+G + IL + +
Sbjct: 59 AVEARAIKTVFS--------EHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGV 110
Query: 386 LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
P +LN N + L + +R A +SFG GGTNA ++ +
Sbjct: 111 APMTLNVKNPDPIFDKRFMPLTTSK----------KMLVRTAMSNSFGFGGTNASLLFA 159
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 120 bits (302), Expect = 2e-32
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IYA + G + + P + + +A ++ I +GYI HGT T +GD
Sbjct: 2 IYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E+ +K F + ++ + S K+ +GHL A+G + + L + +
Sbjct: 62 AEVLAIKRVFG----------DHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVI 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
P ++N + + + L +P+ E K+ A +SF GG NA +
Sbjct: 112 PPTINLEDPDPEL-----------DLDFVPEPR-EAKVDYALSNSFAFGGHNAVLAFK 157
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 7e-30
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 28/178 (15%)
Query: 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPI 327
YA I G T +G + AP+ ++ A + + + Y+ HGT T +GD
Sbjct: 1 YAEIVGYGATSDGAD--MVAPSGEGAVRCMKMAMHGVDTPID---YLNSHGTSTPVGDVK 55
Query: 328 EIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387
E+ ++ F + + K GH A+G+ + +L L++ +
Sbjct: 56 ELAAIREVFGDK------------SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIA 103
Query: 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
S+N L++ + L I+ D +L +SFG GGTNA +V+ +
Sbjct: 104 PSINIEELDEQA----AGLNIVTETTDR-------ELTTVMSNSFGFGGTNATLVMRK 150
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 108 bits (270), Expect = 2e-27
Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 27/228 (11%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + I G+ P G N +FW++L G + ++ + +
Sbjct: 1 RRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPSP--------------YRS 45
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ FD P E + MD + + + + +G D L + GV +G++
Sbjct: 46 QVAAEADFDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 105
Query: 133 GSDYTRLLSDYIKIP------------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
+ T L +Y+ + ++ H +V+ +++ GP ++ T
Sbjct: 106 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVST 165
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
C+S L +V A+++I+ G + G + + P + +
Sbjct: 166 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATT 213
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 103 bits (258), Expect = 2e-26
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 24/180 (13%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
I A + G T + P ++ A E+ I + Y+ HGT T +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E + + S K+ GHL A+G + I +++ +
Sbjct: 62 GESGAIVAVLGKEVPV-------------SSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 108
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
P + ++ I+ + + + ++ A ++FG GG NA + +
Sbjct: 109 PMTAGTSEVSDYIEAN----VVYGQGLEK-------EIPYAISNTFGFGGHNAVLAFKRW 157
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 98.2 bits (243), Expect = 8e-24
Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 22/220 (10%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
+ I G+ P G L+ +W + G + + +R+ + A L
Sbjct: 2 VLITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPV--TRFDVS------------RYPATL 46
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
I DP R+ L + ++DA D L+ + GV +
Sbjct: 47 AGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACG 106
Query: 135 DYTRLLSDYIKIPVNAHH------CIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVA 188
+ ++ K+ AV +IS + GPS + + L A
Sbjct: 107 GFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDA 166
Query: 189 VHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
+ A ++I+ G + GG++ L P ++ +G +S
Sbjct: 167 LGHARRTIRRGTPL-VVSGGVDSALDPWGWVSQIASGRIS 205
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} Length = 82 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Score = 46.5 bits (110), Expect = 3e-07
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
+ D F+D+G DS+ + + + +++ + T + + + +
Sbjct: 27 ELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPA 80
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} Length = 86 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Score = 44.2 bits (104), Expect = 2e-06
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
D F D+G DS+ + ++ S+ +SI T + I
Sbjct: 22 DGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGA 81
Query: 700 IS 701
++
Sbjct: 82 LA 83
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Score = 41.9 bits (98), Expect = 2e-05
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
I +D F +G DS+ + + +I + + + T + +
Sbjct: 21 ESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80
Query: 700 IS 701
++
Sbjct: 81 LT 82
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Score = 41.0 bits (96), Expect = 3e-05
Identities = 6/54 (11%), Positives = 22/54 (40%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698
F +G S+ A+ +++ + + + ++ PT+ +++ +
Sbjct: 23 SGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT 76
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} Length = 74 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Score = 37.8 bits (88), Expect = 3e-04
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 639 KLQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
+L + +A F D+G D + V + ++ + D+ I+ T+ +I
Sbjct: 15 RLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (87), Expect = 4e-04
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNK 691
I + D+ D+GLDS++ V + + + DL + ++ TL K
Sbjct: 15 HILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVRQ-LTLRK 68
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} Length = 80 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Score = 36.8 bits (85), Expect = 8e-04
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 640 LQIKSEQFDDDAIFID-MGLDSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFI 696
+ + D + LDS+ V + ++ SQ + ++ ++ T NK +
Sbjct: 17 TGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKV 76
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.7 bits (84), Expect = 0.002
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 639 KLQIKSEQFDDDA-IFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
I+ + + D+ +DS+ V + + + I + T+ +I
Sbjct: 19 VTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYI 77
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 37.9 bits (87), Expect = 0.003
Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 41/229 (17%)
Query: 16 AIIGLACYLPKGINTLSKFWKILKK--GSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I+ + P S + K S EL E + IK ++ +
Sbjct: 18 TILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRY------MY 71
Query: 74 LKDIECFDAPFF--KISPIEAESMDPQQRILLEL----SWKTIEDAGYDSSKLSGSNTGV 127
L + + P ++P D + L + K I++ G SK+
Sbjct: 72 LTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKI-----TH 126
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
I + S +DY + + C +
Sbjct: 127 LIVCTTSGVDMPGADYQ--LTKLLGLRPYVKRYM---------------MYQQGCFAGGT 169
Query: 188 AVHEALQSIKNGESSQALVGGINL---ILHPSN--TIAYYKAGMLSRDG 231
+ A +N + ++ LV + + + L DG
Sbjct: 170 VLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.98 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.98 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 99.34 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.21 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 99.12 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.11 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 99.08 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 99.06 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.01 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 99.01 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.99 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 98.98 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.96 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 98.94 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 98.92 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 98.87 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.87 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 98.83 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 98.76 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.75 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.7 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.68 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 98.67 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.61 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.59 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.55 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.54 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 98.5 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.36 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 97.78 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 97.76 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 97.37 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 97.33 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.33 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.25 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 97.25 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 96.32 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 94.55 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 93.06 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 92.63 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 90.4 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 86.48 |
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=9e-47 Score=382.57 Aligned_cols=199 Identities=27% Similarity=0.370 Sum_probs=184.5
Q ss_pred CCCCCccccCCCCcceecCceEEEEecchhhhhhCCCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy11395 229 RDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDV 308 (831)
Q Consensus 229 ~~g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~ 308 (831)
|+++|||||.++|||++|||++++|||++++|+++|++||++|+|+++++||.+.+.+.|+...+.++++++|+++++++
T Consensus 3 P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i~~ 82 (205)
T d1tqya2 3 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDA 82 (205)
T ss_dssp GGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCG
T ss_pred CCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcCCc
Confidence 67899999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCC
Q psy11395 309 RSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPA 388 (831)
Q Consensus 309 ~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp 388 (831)
+||+|||+|||||+++|++|+++|.++|+... .+++|+|+|+++||+++|||+++|+|++++|++++|||
T Consensus 83 ~~i~~ie~hgtGt~~~D~~E~~ai~~~~~~~~----------~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp 152 (205)
T d1tqya2 83 TDIDYINAHGSGTRQNDRHETAAYKRALGEHA----------RRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPP 152 (205)
T ss_dssp GGCCEEECCCCCCHHHHHHHHHHHHHHTGGGG----------GGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECC
T ss_pred cceeeeeccccccccCchhHHHHHHHhhcccc----------CCceeeeecccccccccccchhHHHHHHHHHhCCeEcc
Confidence 99999999999999999999999999997532 46889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccccc
Q psy11395 389 SLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNI 448 (831)
Q Consensus 389 ~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~~~ 448 (831)
++|++++||+++++ +++.+.++| ..|++++|||||||+|+|+||++++.
T Consensus 153 ~~~~~~~~p~~~~~----~v~~~~~~~-------~~~~a~~~s~GfGG~na~~vl~~~~~ 201 (205)
T d1tqya2 153 TANLRTSDPECDLD----YVPLEARER-------KLRSVLTVGSGFGGFQSAMVLRDAET 201 (205)
T ss_dssp BTTCCSBBTTBCSC----CCBSSCEEC-------CCSEEEEEEEETTTEEEEEEEECHHH
T ss_pred cCCCCCCCCCCCcc----cCCCCCcCC-------CCCEEEEeCCCCCceeEEEEEeeCCC
Confidence 99999999999876 344444333 56899999999999999999998764
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.9e-45 Score=366.82 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=173.1
Q ss_pred CCCCCccccCCCCcceecCceEEEEecchhhhhhCCC-ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy11395 229 RDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHD-NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNID 307 (831)
Q Consensus 229 ~~g~~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~-~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~ 307 (831)
|++.|||||.++|||++|||++++|||++++|+++|+ +||++|.|+++++|+.+. .. ++.+++++|++||++++++
T Consensus 2 p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~-~~--~~~g~~~~i~~aL~~a~i~ 78 (194)
T d1tqyb2 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPG-SG--RPAGLERAIRLALNDAGTG 78 (194)
T ss_dssp GGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTT-CC--CCCSHHHHHHHHHHHHTCC
T ss_pred CCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeeccccccccccc-cc--chhhhhhhhhhhccccccc
Confidence 5678999999999999999999999999999999998 699999999999998653 23 3345889999999999999
Q ss_pred CCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccC
Q psy11395 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387 (831)
Q Consensus 308 ~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ip 387 (831)
++||+|||+|||||+.+|++|+++|.++|+. ..++|+|+|+++||+++|||+++++|++++|++++||
T Consensus 79 ~~di~~v~ahgtGt~~~D~~E~~al~~~f~~------------~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ip 146 (194)
T d1tqyb2 79 PEDVDVVFADGAGVPELDAAEARAIGRVFGR------------EGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIA 146 (194)
T ss_dssp GGGCCEEECCCCCSHHHHHHHHHHHHHHHCT------------TCSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBC
T ss_pred ccceeeeeccccCcccccHHHhhhhhhhhhc------------cccccccccccccccccccccceehhhhhhhhhceec
Confidence 9999999999999999999999999999964 3578999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEccc
Q psy11395 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446 (831)
Q Consensus 388 p~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~~~ 446 (831)
|++|++++||+++++ ++.+++++ ..+++++||||||||+|+|+||++|
T Consensus 147 p~~~~~~~~~~~~~~----~v~~~~~~-------~~~~~a~v~s~GfgG~na~~vl~~~ 194 (194)
T d1tqyb2 147 PTAGVTSVPREYGID----LVLGEPRS-------TAPRTALVLARGRWGFNSAAVLRRF 194 (194)
T ss_dssp CBCSCCCCCGGGCCE----ECBSSCBC-------CCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred cccCCCCCCcccCcc----ccCCCCcc-------CCCCEEEEECcCCCceeEEEEEeeC
Confidence 999999999988764 44444433 2578999999999999999999986
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.4e-43 Score=367.13 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=207.1
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
+++|||||||+++|.| .++++||++|.+|+++|++++ +|+... ...++++.+++ |++.. .+++++
T Consensus 1 ~rrVaItG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~--~~~~~~--------~~~~~~~~v~~---~~~~~-~~~~~~ 65 (250)
T d2gfva1 1 KRRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLID--HFDTSA--------YATKFAGLVKD---FNCED-IISRKE 65 (250)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCCTT--------CSCCEEECCTT---CCCTT-TSCHHH
T ss_pred CCeEEEECCeeECCCc-CCHHHHHHHHHcCCCeeecCC--cccccc--------cCCccceeccc---chhhh-hhhhHH
Confidence 4789999999999998 899999999999999999886 443221 12345666665 44433 378999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHH
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
.+.|||++++++.++++||+|||+...+++..++||++|++.+.+...... .....+.+..+++.+.++++++|
T Consensus 66 ~~~~d~~~~~~l~aa~~Al~dAg~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 145 (250)
T d2gfva1 66 QRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHL 145 (250)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHhcCCCccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999987665332211 12235667777888899999999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNA 240 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a 240 (831)
++.||++||+++|+++|+||+.||++|+++|++|+||++||||++..++|..+..|..++.||. ++.|||||+++
T Consensus 146 a~~~gl~Gp~~tv~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~r 225 (250)
T d2gfva1 146 TIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKER 225 (250)
T ss_dssp HHHTTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTC
T ss_pred HHHhCCCCCccccccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985 36699999999
Q ss_pred CcceecCceEEEEecchhhhhhCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHD 265 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~ 265 (831)
||+++|||+|++|||++++|++||+
T Consensus 226 dG~v~gEGaa~lVLE~~~~A~~rGA 250 (250)
T d2gfva1 226 DGFVLGDGAGMLVLEEYEHAKKRGA 250 (250)
T ss_dssp CSBCBBCEEEEEEEEEHHHHHHHTC
T ss_pred CCEeeeeEEEEEEECcHHHHHHCcC
Confidence 9999999999999999999999984
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.6e-43 Score=365.34 Aligned_cols=237 Identities=23% Similarity=0.311 Sum_probs=202.8
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|.+|++++.+++ ||+...+ ....++.. .+++..+ ++++++
T Consensus 2 ~rVaItG~G~vsp~g-~~~~e~w~~l~~G~s~i~~~~--~~~~~~~--------~~~~~~~~----~~~~~~~-~~~~~~ 65 (249)
T d1j3na1 2 RRVVVTGLGALTPIG-VGQEAFHKAQLAGKSGVRPIT--RFDASAL--------PVRIAAEV----DVDPGAY-LDRKEL 65 (249)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECC--SSCCTTS--------SCCEEECC----CCCGGGT-SCHHHH
T ss_pred CcEEEECCEeECCCc-CCHHHHHHHHHcCCCccccCC--ccccccC--------Cccccccc----ccccccc-ccHHHH
Confidence 369999999999998 899999999999999999886 4532211 11122222 1333333 789999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRIS 166 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris 166 (831)
+.|||+++++++++++||+|||+++++++..+||||+|++.+++..... ......+.++.+.+...+.++++|+
T Consensus 66 ~~~d~~~~~~l~aa~~Al~dAGl~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 145 (249)
T d1j3na1 66 RRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIA 145 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHcCCChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhH
Confidence 9999999999999999999999999999999999999998876543222 1222346677788888999999999
Q ss_pred HHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCCC
Q psy11395 167 YFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241 (831)
Q Consensus 167 ~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a~ 241 (831)
+.||++||+++|+++|+||+.||++|+++|++|+||+|||||+|..+.|..+..|...+.|+. +++|||||.++|
T Consensus 146 ~~~gl~Gp~~tv~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~d 225 (249)
T d1j3na1 146 MRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225 (249)
T ss_dssp HHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCC
T ss_pred hhcCCCCCccccccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985 467999999999
Q ss_pred cceecCceEEEEecchhhhhhCCC
Q psy11395 242 GYVRGEGAVMLMLKPLSVALNDHD 265 (831)
Q Consensus 242 G~v~gEGaaavvL~~~~~A~~~g~ 265 (831)
|+++|||++++|||++++|++||+
T Consensus 226 G~v~gEGa~~lvLe~~~~A~~rGA 249 (249)
T d1j3na1 226 GFVMGEGAGVLVLEAYEHAKKRGA 249 (249)
T ss_dssp CBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CEeeEeEEEEEEEccHHHHHHCcC
Confidence 999999999999999999999984
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=6.2e-42 Score=358.89 Aligned_cols=239 Identities=25% Similarity=0.316 Sum_probs=205.5
Q ss_pred CCCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhh
Q psy11395 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIE 91 (831)
Q Consensus 12 ~~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~e 91 (831)
+++|||||||+++|+| .++++||++|.+|+++++++| ||+.... ...+.+.+. ++..++.+++++
T Consensus 1 ~~rVaItG~G~v~p~G-~~~~~~w~~L~~G~~~i~~~~--~~~~~~~--------~~~~~g~~~----~~~~~~~~~~~~ 65 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPIT--RFDASDQ--------ACRFGGEVK----DFDATQFLDRKE 65 (250)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECC--SSCCTTS--------SCCEEECCC----SCCGGGTSCHHH
T ss_pred CCeEEEECCeeECCCC-CCHHHHHHHHHcCCCeeccCC--ccccccc--------cccccceee----ecccccccchhh
Confidence 5899999999999998 899999999999999999887 5543211 122344443 333455699999
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhh------hccCCCCcccccCcchhHHHHHH
Q psy11395 92 AESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSD------YIKIPVNAHHCIGNSMAVLANRI 165 (831)
Q Consensus 92 a~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~a~ri 165 (831)
.+.|||+++++++++++||+|||++...+...++||++|++.+........ .......+........+.++++|
T Consensus 66 ~~~~d~~~~~~~~a~~~Al~~Agl~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 145 (250)
T d1e5ma1 66 AKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLT 145 (250)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHcCCChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhH
Confidence 999999999999999999999999999999999999999987654433221 12224556666777888999999
Q ss_pred HHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC-----CCCCccccCCC
Q psy11395 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNA 240 (831)
Q Consensus 166 s~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~-----~g~~~~Fd~~a 240 (831)
++.||++||+++|+++|+||+.||++|+++|++|+||++||||++..++|..+..|..++.|+. +++|||||+++
T Consensus 146 s~~~gl~Gp~~tv~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~ 225 (250)
T d1e5ma1 146 AINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDR 225 (250)
T ss_dssp HHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTC
T ss_pred HHhccCCCCCccccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985 46899999999
Q ss_pred CcceecCceEEEEecchhhhhhCCC
Q psy11395 241 DGYVRGEGAVMLMLKPLSVALNDHD 265 (831)
Q Consensus 241 ~G~v~gEGaaavvL~~~~~A~~~g~ 265 (831)
|||++|||+++||||++++|++||+
T Consensus 226 dG~~~gEGa~~~vLe~l~~A~~rGA 250 (250)
T d1e5ma1 226 DGFVMGEGSGILILEELESALARGA 250 (250)
T ss_dssp CSBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CCEeeEeeEEEEEEeeHHHHHHCcC
Confidence 9999999999999999999999984
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=4e-38 Score=332.99 Aligned_cols=250 Identities=19% Similarity=0.286 Sum_probs=198.4
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCccccccc----ccCCCCcccccccC---cccCCCCCC
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIK----NKHKGINFGAFLKD---IECFDAPFF 85 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~----~~~~~~~~~~~l~~---~~~FD~~~f 85 (831)
++||||||||++|.| .++++||++|.+|+++|.++|.+||....+.... .......+++++.. ...||..+|
T Consensus 1 rRVvITG~G~vsP~G-~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALW 79 (270)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHH
T ss_pred CeEEEECceeECCCc-CCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHh
Confidence 579999999999998 8999999999999999999999999765433211 11222345666543 233444433
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHcCCCCCC-CCCCcceeEEeccccchHH------HHhhhccCCCCcccccCcch
Q psy11395 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSK-LSGSNTGVFIGASGSDYTR------LLSDYIKIPVNAHHCIGNSM 158 (831)
Q Consensus 86 ~i~~~ea~~mdp~~rl~l~aa~~ALedAG~~~~~-~~~~~~gV~~G~~~~~~~~------~~~~~~~~~~~~~~~~g~~~ 158 (831)
.....+++.....+.+..+|++++++.... ....++++.++........ ...........++..++.+.
T Consensus 80 ----~~~~~~~~~~~~a~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (270)
T d2ix4a1 80 ----LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILV 155 (270)
T ss_dssp ----SCSTTCCHHHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCT
T ss_pred ----hhhhhhhhhHHHHHHHHHHHHHHhhhccccccccccceEEeeccccccccchhhcchhhhccccccCcccCccccc
Confidence 234457778888888999999999985433 2234456655554433211 11111223456677788889
Q ss_pred hHHHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC------CCC
Q psy11395 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGI 232 (831)
Q Consensus 159 ~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~------~g~ 232 (831)
++++++|+++||++||+++|+++|+||+.||++|+++|++|+||+|||||++..+.|..+..|...++|+. +++
T Consensus 156 ~~~a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~ 235 (270)
T d2ix4a1 156 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEA 235 (270)
T ss_dssp THHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGS
T ss_pred chhHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 468
Q ss_pred CccccCCCCcceecCceEEEEecchhhhhhCCCce
Q psy11395 233 CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNI 267 (831)
Q Consensus 233 ~~~Fd~~a~G~v~gEGaaavvL~~~~~A~~~g~~i 267 (831)
|||||++++||++|||+|++|||++++|+++|++|
T Consensus 236 ~rPFD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 236 SRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred cCCCCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 99999999999999999999999999999999987
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-38 Score=330.60 Aligned_cols=238 Identities=19% Similarity=0.218 Sum_probs=192.3
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++|||||||+++|.| .++++||++|++|++++++++..++. . .....++ .+..+...+ +...+.
T Consensus 2 ~RVvITG~G~i~p~G-~~~~~~w~~L~~G~sgi~~~~~~~~~--~--------~~~~~~~---~~~~~~~~~--~~~~~~ 65 (253)
T d2vbaa1 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKDS--G--------MRSHVWG---NVKLDTTGL--IDRKVV 65 (253)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHT--T--------CSCCEEE---CCCCCCTTS--SCHHHH
T ss_pred CcEEEEccEEECCCC-CCHHHHHHHHHcCCCccccCCccccc--c--------Ccccccc---ccccccccc--ccchhh
Confidence 379999999999998 89999999999999999988642211 0 0011111 222233333 578889
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCC-CCCcceeEEeccccchHHHHhhh-------ccCCCCcccccCcchhHHHHH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKL-SGSNTGVFIGASGSDYTRLLSDY-------IKIPVNAHHCIGNSMAVLANR 164 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~-~~~~~gV~~G~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~a~r 164 (831)
+.+++..++.+.++.+|++++|+..... ...++||++|+..+......... ....+.++..+....++++++
T Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 145 (253)
T d2vbaa1 66 RFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSAC 145 (253)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHhhccchhccCCCCEEEEeccccccccccccccccccccCCccccCchhhhccccccccce
Confidence 9999999999999999999999976543 45689999999876543222111 111345667778889999999
Q ss_pred HHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC------CCCCccccC
Q psy11395 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDK 238 (831)
Q Consensus 165 is~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~------~g~~~~Fd~ 238 (831)
|++.||++||+++|+++|+||+.||++|+++|++|+||++||||++.+..+ ....+..++.++. ++.|||||.
T Consensus 146 is~~~g~~Gp~~~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~~~~-~~~~~~~~~~ls~~~~~~P~~~~rPFD~ 224 (253)
T d2vbaa1 146 LATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPEKASRTYDA 224 (253)
T ss_dssp HHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHH-HHHHHHHTTCBCCSCTTSGGGSCCTTBT
T ss_pred eccccCcccceeeeeccchhHHHHHHHHHHhcchhccceeeecchhhhhcc-hhhhHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999986555 5667888887764 688999999
Q ss_pred CCCcceecCceEEEEecchhhhhhCCCce
Q psy11395 239 NADGYVRGEGAVMLMLKPLSVALNDHDNI 267 (831)
Q Consensus 239 ~a~G~v~gEGaaavvL~~~~~A~~~g~~i 267 (831)
+++||++|||++++|||++++|++||++|
T Consensus 225 ~~~G~v~gEGa~~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 225 HRDGFVIAGGGGMVVVEELEHALARGAHI 253 (253)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCEeeeeEEEEEEEccHHHHHHccCcC
Confidence 99999999999999999999999999986
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=1e-38 Score=310.19 Aligned_cols=161 Identities=25% Similarity=0.395 Sum_probs=147.7
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
||||+|+|+++++||.+.+.+.|++.+|.++|++||++||++|+||+|||+|||||+++|++|+.+|.++|+...
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~~D~~E~~al~~vf~~~~----- 75 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHA----- 75 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGG-----
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcccchHHhhhhhhccccCC-----
Confidence 699999999999999998889999999999999999999999999999999999999999999999999997521
Q ss_pred cccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r 425 (831)
.+++|+|+|+++||+++|||++++++++++|++++|||++|+++|||.+++. +++.+..+| ..+
T Consensus 76 -----~~~~v~s~K~~~GH~~~AsG~~~l~~~l~~~~~g~ipp~~~~~~~~~~~~~~----~~~~~~~~~-------~~~ 139 (161)
T d1e5ma2 76 -----YNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLD----YVPGQSRAL-------IVD 139 (161)
T ss_dssp -----GGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSC----CCBSSCEEC-------CCS
T ss_pred -----CcceEEecccccccccccchhhHHHHhHHhcccCeeCCccCCCCCCCCCCcc----cCcCcccCC-------CCC
Confidence 4689999999999999999999999999999999999999999999998866 334444443 468
Q ss_pred EEEEcccCCCCceeEEEEcccc
Q psy11395 426 IAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 426 ~a~v~sfG~gG~nahvil~~~~ 447 (831)
++++|||||||+|+|+||++|.
T Consensus 140 ~a~~nsfGfGG~Na~lvl~~y~ 161 (161)
T d1e5ma2 140 VALSNSFGFGGHNVTLAFKKYQ 161 (161)
T ss_dssp EEEEEEEETTTEEEEEEEECCC
T ss_pred EEEEeCcCcCcEeEEEEEeeeC
Confidence 9999999999999999999983
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-38 Score=305.15 Aligned_cols=160 Identities=26% Similarity=0.428 Sum_probs=143.7
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
||||+|+|+++++||.+...+.|++.+|.++|+++|+++|++|+||+|||+|||||++||++|+.||.++|+...
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~gD~~E~~Al~~~f~~~~----- 75 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAA----- 75 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGG-----
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcccHHHHHHHHHHHhcccc-----
Confidence 699999999999999988888899999999999999999999999999999999999999999999999997521
Q ss_pred cccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r 425 (831)
.+++|+|+|+++||+++|||+++++|++++|++++|||++|+.++++.+.+.. +..+..+| ..++
T Consensus 76 -----~~~~i~s~Ks~~GH~~~AsG~~~li~~ll~l~~~~ipp~~~~~~~~~~~~~~~----~~~~~~~~------~~~~ 140 (161)
T d2gfva2 76 -----SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF----VPHEARQV------SGME 140 (161)
T ss_dssp -----TTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHSCEECCBTTCSSBCTTCCSBC----CBSSCEEC------SSCC
T ss_pred -----ccceeccccccccccHHHHHHHHHHHHHHHhcCCEeccccccccccccccccc----ccccCccC------CCCc
Confidence 56899999999999999999999999999999999999999999999876542 22222211 3568
Q ss_pred EEEEcccCCCCceeEEEEcc
Q psy11395 426 IAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 426 ~a~v~sfG~gG~nahvil~~ 445 (831)
+++||||||||+|+|+|||+
T Consensus 141 ~a~vnsfGfgG~Na~lil~~ 160 (161)
T d2gfva2 141 YTLCNSFGFGGTNGSLIFKK 160 (161)
T ss_dssp EEEEEEEEGGGEEEEEEEEC
T ss_pred EEEEeCcCccceeEEEEEEE
Confidence 99999999999999999986
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-37 Score=302.04 Aligned_cols=158 Identities=25% Similarity=0.403 Sum_probs=144.1
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
|||++|+|+++++||.+...+.|++.+|..+|+++|+++|++|+||+|||+|||||+.+|++|+.||.++|+...
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~gD~~E~~Al~~~f~~~~----- 75 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHA----- 75 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCccchHHHHHHHHHHHHhcC-----
Confidence 699999999999999998899999999999999999999999999999999999999999999999999997532
Q ss_pred cccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r 425 (831)
.+++|+|+|+++||+++|||+++++|++++|++++|||++|++++|+++++.- . +|+. +.+++
T Consensus 76 -----~~~~i~s~K~~~GH~~~asG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~-----~----~~~~---~~~~~ 138 (159)
T d1j3na2 76 -----KRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDF-----V----PEPR---EAKVD 138 (159)
T ss_dssp -----TTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBC-----C----SSCE---ECCCS
T ss_pred -----CCceEecccccccccccccccchhhhhhhHhhCCEeccccccccccceeeeec-----c----Cccc---CCCCC
Confidence 45789999999999999999999999999999999999999999999887652 1 1221 23578
Q ss_pred EEEEcccCCCCceeEEEEcc
Q psy11395 426 IAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 426 ~a~v~sfG~gG~nahvil~~ 445 (831)
+++||||||||+|+|+|||+
T Consensus 139 ~a~v~sfGfgG~Na~~vl~k 158 (159)
T d1j3na2 139 YALSNSFAFGGHNAVLAFKR 158 (159)
T ss_dssp EEEEEEECTTSEEEEEEEEC
T ss_pred EEEEeCCCCCceeEEEEEEE
Confidence 99999999999999999985
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=1.6e-37 Score=300.64 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=144.8
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
.|||+|+|+++++||.+...+.|++.+|.++|++||+++|++|+||+|||+|||||+++|++|+.+|.++|+
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~~D~~E~~ai~~~fg-------- 72 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLG-------- 72 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHHHHHHHHHC--------
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeeccccccchhHHHHHHHHhcC--------
Confidence 489999999999999998888999999999999999999999999999999999999999999999999997
Q ss_pred cccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r 425 (831)
+.++|+|+|+++||+++|||++++++++++|++++|||++|++++||.++++ ++..+.++ ...+
T Consensus 73 -----~~~~v~s~Ks~iGH~~~asG~~~l~~~l~~l~~g~iPp~~~~~~~~~~~~~~----~~~~~~~~-------~~~~ 136 (158)
T d1ox0a2 73 -----KEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEAN----VVYGQGLE-------KEIP 136 (158)
T ss_dssp -----SSSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSE----ECBSSCEE-------CCCS
T ss_pred -----CcccCcCcccccccchhhhhhhhhcccccccccceeccccCCCCCCcccCcc----cccCcccc-------CCCC
Confidence 3578999999999999999999999999999999999999999999998765 33443332 3568
Q ss_pred EEEEcccCCCCceeEEEEcccc
Q psy11395 426 IAGVSSFGSGGTNAHVVLSEYN 447 (831)
Q Consensus 426 ~a~v~sfG~gG~nahvil~~~~ 447 (831)
++++|||||||+|+|+||++|.
T Consensus 137 ~a~~nsfGfGG~Na~lvl~~~~ 158 (158)
T d1ox0a2 137 YAISNTFGFGGHNAVLAFKRWE 158 (158)
T ss_dssp EEEEEEEETTTEEEEEEEECCC
T ss_pred EEEEeCcCCCcEeEEEEEEecC
Confidence 9999999999999999999873
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=1.5e-36 Score=294.96 Aligned_cols=160 Identities=24% Similarity=0.336 Sum_probs=141.2
Q ss_pred EEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccc
Q psy11395 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIK 347 (831)
Q Consensus 268 ~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~ 347 (831)
|++|+|+++++||.+...+.|++.++..+|+++|++++++|+||+|||+|||||+++|++|+.+|+++|+....
T Consensus 1 Y~~i~G~~~~~Dg~~~t~p~~~g~~~~~~~~~al~~a~~~~~di~yveaHGtGT~~gD~~E~~al~~~~~~~~~------ 74 (161)
T d2ix4a2 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHAT------ 74 (161)
T ss_dssp CEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHTHHHH------
T ss_pred CeEEEEEEEcCCCCCCcCCChhHHHHHHHHHHHHHhcCCCccccCEEEEeccCCCCCcHHHHhhhHhhhccccc------
Confidence 79999999999999755556667788889999999999999999999999999999999999999999976321
Q ss_pred cccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEE
Q psy11395 348 NFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427 (831)
Q Consensus 348 ~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a 427 (831)
..+++|+|+|+++||+++|||+++++|++++|+++.+||++|++++||.+++...++...+ +..+|++
T Consensus 75 --~~~~~i~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~a 142 (161)
T d2ix4a2 75 --SGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSK----------KMLVRTA 142 (161)
T ss_dssp --TSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCCSSCE----------ECCCSEE
T ss_pred --ccceeeeccccccCCccchHHHHHHHHHHHHHhcCCCCCccCCCCCCcccCcccCccccCC----------CCCcCEE
Confidence 1568999999999999999999999999999999999999999999999987754432211 2357899
Q ss_pred EEcccCCCCceeEEEEcc
Q psy11395 428 GVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 428 ~v~sfG~gG~nahvil~~ 445 (831)
++|||||||+|+|+||++
T Consensus 143 ~~nsfGfgG~Na~lvl~~ 160 (161)
T d2ix4a2 143 MSNSFGFGGTNASLLFAS 160 (161)
T ss_dssp EEEEEETTTEEEEEEEEC
T ss_pred EEeCCcccceeEEEEEEe
Confidence 999999999999999985
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.4e-35 Score=280.38 Aligned_cols=150 Identities=27% Similarity=0.432 Sum_probs=136.2
Q ss_pred EEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccc
Q psy11395 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIK 347 (831)
Q Consensus 268 ~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~ 347 (831)
||+|+|+++++||.+ +++|++++|.++|+++|+.+ +.||||||+|||||+++|++|+.||.++|+.
T Consensus 1 Yaei~G~g~~~Dg~~--~taP~~~~~~~~~~~al~~a---~~~I~~v~aHgtGT~~gD~~E~~Al~~vfg~--------- 66 (151)
T d2vbaa2 1 YAEIVGYGATSDGAD--MVAPSGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREVFGD--------- 66 (151)
T ss_dssp CEEEEEEEEEECCSC--TTSCCSHHHHHHHHHHHTTC---CSCCCEEECCCCSCHHHHHHHHHHHHHHHTT---------
T ss_pred CEEEEEEEEecCCCC--CCCcCHHHHHHHHHHhhhcC---cccceeEEEeccCCccccHHHHHHHHHHhCC---------
Confidence 799999999999975 88999999999999999876 5789999999999999999999999999974
Q ss_pred cccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEE
Q psy11395 348 NFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427 (831)
Q Consensus 348 ~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a 427 (831)
+.++|+|+|+++||+++|||+++++|++++|++++|||++|++++++++. .++++++.++| +++++
T Consensus 67 ---~~~~v~s~K~~~GH~~~asG~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~a 132 (151)
T d2vbaa2 67 ---KSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAA----GLNIVTETTDR-------ELTTV 132 (151)
T ss_dssp ---CCCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCT----TSEECCSCEEC-------CCCEE
T ss_pred ---CCcccccchhhccccccchhhhhhhHHHHHHHcCCcccccCccccccccc----cccccCcCcCC-------CCCEE
Confidence 35779999999999999999999999999999999999999999998754 34677776665 45789
Q ss_pred EEcccCCCCceeEEEEcc
Q psy11395 428 GVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 428 ~v~sfG~gG~nahvil~~ 445 (831)
++|||||||+|+|+||++
T Consensus 133 ~~nsfGfGG~Na~~vl~~ 150 (151)
T d2vbaa2 133 MSNSFGFGGTNATLVMRK 150 (151)
T ss_dssp EEEEEETTTEEEEEEEEC
T ss_pred EEeCCcccceeEEEEEEE
Confidence 999999999999999986
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.98 E-value=7.4e-33 Score=282.98 Aligned_cols=203 Identities=19% Similarity=0.335 Sum_probs=172.7
Q ss_pred CCEEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhh
Q psy11395 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEA 92 (831)
Q Consensus 13 ~~IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea 92 (831)
++||||||||++|.| .++++||++|.+|+++|++++. |+.. .+.+.+.....||...|.++++++
T Consensus 1 rRVvItG~G~v~p~G-~~~~~~w~~L~~G~s~i~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (216)
T d1tqya1 1 RRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISF--FDPS------------PYRSQVAAEADFDPVAEGFGPREL 65 (216)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECCS--SCCT------------TSSCCEEECCCCCHHHHTCCHHHH
T ss_pred CeEEEEeceeECCCC-CCHHHHHHHHHcCCCEeecCCc--cCCC------------cccccccccccccccccccChhhh
Confidence 589999999999998 8999999999999999999873 3211 112233344458888888999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhc------------cCCCCcccccCcchhH
Q psy11395 93 ESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYI------------KIPVNAHHCIGNSMAV 160 (831)
Q Consensus 93 ~~mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~------------~~~~~~~~~~g~~~~~ 160 (831)
+.||+++++++.++.+||+|||++++++.+.++|+++|.+.+.+......+. ......+..++.+.++
T Consensus 66 ~~~~~~~~~~l~aa~~Al~dAg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (216)
T d1tqya1 66 DRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSV 145 (216)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTH
T ss_pred cccCcchhhHHHHHHHHHHHhcCCccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchH
Confidence 9999999999999999999999999999999999999998876544322211 0123445566677889
Q ss_pred HHHHHHHHcCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCC
Q psy11395 161 LANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD 230 (831)
Q Consensus 161 ~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~ 230 (831)
++++||+.||++||+++|+++|+||+.||++|+++|++|+||+|||||+|..++|..+..|++++.||..
T Consensus 146 ~a~~ia~~~g~~Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~ 215 (216)
T d1tqya1 146 MPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215 (216)
T ss_dssp HHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC
T ss_pred HHHHHHHhcCccccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999963
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.98 E-value=1e-32 Score=280.22 Aligned_cols=199 Identities=21% Similarity=0.288 Sum_probs=170.5
Q ss_pred EEEEcccccccCCCCCHHHHHHHHhcCCCceeeCCcccCCCcccccccccCCCCcccccccCcccCCCCCCCCChhhhcc
Q psy11395 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFFKISPIEAES 94 (831)
Q Consensus 15 IaIiG~g~~~P~g~~~~~~fw~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i~~~ea~~ 94 (831)
||||||||++|.| .++++||++|.+|++++++++ ||+...+ ...+++.+++ |++.++ +++++.+.
T Consensus 2 VvITG~G~vsp~g-~~~~~~w~~L~~G~sgi~~~~--~~~~~~~--------~~~~~~~~~~---~~~~~~-~~~~~~~~ 66 (208)
T d1tqyb1 2 VLITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPVT--RFDVSRY--------PATLAGQIDD---FHAPDH-IPGRLLPQ 66 (208)
T ss_dssp EEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECT--TTTGGGS--------SCCEEECCCS---CCHHHH-SCTTTGGG
T ss_pred EEEEcceeECCCc-CCHHHHHHHHHcCCCceecCc--ccCchhc--------cccccccccc---cccccc-CChhHhhc
Confidence 8999999999998 799999999999999999885 4532211 2234554444 666655 78999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHh------hhccCCCCcccccCcchhHHHHHHHHH
Q psy11395 95 MDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLS------DYIKIPVNAHHCIGNSMAVLANRISYF 168 (831)
Q Consensus 95 mdp~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris~~ 168 (831)
|||++++++.++++||+|||+++.+++..++|+++|++.+....... ........++..++.+.++++++|++.
T Consensus 67 ~~~~~~~~~~a~~~Al~~Ag~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 146 (208)
T d1tqyb1 67 TDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIR 146 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHH
T ss_pred cccccccccccccccchhhhcccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhc
Confidence 99999999999999999999999999999999999998765432221 112235667778888999999999999
Q ss_pred cCCCCCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCC
Q psy11395 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR 229 (831)
Q Consensus 169 lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~ 229 (831)
||++||+++|+++|+||+.||+.|+++|++| ||+|||||+|..++|..+..|.++++||.
T Consensus 147 ~gl~Gp~~tv~tACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 147 HGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp HTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred ccccceeeeccccccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999 99999999999999999999999999985
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=4.4e-12 Score=138.31 Aligned_cols=187 Identities=13% Similarity=0.186 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCc-
Q psy11395 97 PQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPS- 175 (831)
Q Consensus 97 p~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps- 175 (831)
....|+.+|+.+||++||+++++++ -|++++++ +|. ....+..|...||++...
T Consensus 91 ~~~~la~~Aa~~aL~~ag~~~~dId----~lI~~t~t-~~~--------------------~P~~a~~v~~~LGl~~~~~ 145 (372)
T d1teda_ 91 HAVPLAVDVSKRALAGLPYRAAEIG----LLVLATST-GFI--------------------APGVDVAIVKELGLSPSIS 145 (372)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEE----EEEEEESS-CCC--------------------SSCHHHHHHHHHTCCTTCE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC----EEEEeccC-CCC--------------------CchHHHHHHhhhccCCcee
Confidence 3457999999999999999999887 45655543 441 123678899999997643
Q ss_pred -ccc-ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEE
Q psy11395 176 -LLI-DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253 (831)
Q Consensus 176 -~tv-~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavv 253 (831)
+.+ ..||++++.||..|..+|++|..+.+||+++|.+..... ..+. ++.....+++||||+|+|
T Consensus 146 ~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~~~~----------~~d~----~~~~~~~~lfGDGAaA~l 211 (372)
T d1teda_ 146 RVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAV----------FADD----INDVVIHSLFGDGCAALV 211 (372)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCC----------CCSS----HHHHHHHHHBCEEEEEEE
T ss_pred EeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhccccc----------CCCc----chhhhhhhhhcccceeEE
Confidence 334 358999999999999999999999999999997432110 0000 001112346899999999
Q ss_pred ecchhhhhhCCCceEEEEeeeeecc-CCCC---------CCC---CCCC-----HHHHHHHHHHHHHHcCCCCCCcceEE
Q psy11395 254 LKPLSVALNDHDNIYAIIKGSAITH-NGQS---------NGL---TAPN-----PIQQSYLLQKAWNESNIDVRSLGYIE 315 (831)
Q Consensus 254 L~~~~~A~~~g~~i~a~I~g~~~~~-dg~~---------~~~---~~p~-----~~~~~~~i~~al~~Agl~~~dId~ie 315 (831)
|++...... .......+.+..... .+.. .++ ..+. .....++++++|+++|++++||+++-
T Consensus 212 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i 290 (372)
T d1teda_ 212 IGASQVQEK-LEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWA 290 (372)
T ss_dssp EEEECTTSC-CCTTCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEE
T ss_pred eccCCcccc-cCCceeEEecccccccCCCccccccCCCCCcceeechHHHHHHHHHHHHHHHHHHHHhcCCCHHHhhhhh
Confidence 986543222 112223333332111 0000 000 0111 34567889999999999999999999
Q ss_pred ecCCCCCC
Q psy11395 316 CHGTGTKL 323 (831)
Q Consensus 316 ~HgtGT~~ 323 (831)
.|-.+..+
T Consensus 291 ~Hq~~~~i 298 (372)
T d1teda_ 291 IHPGGPKI 298 (372)
T ss_dssp ECCSCHHH
T ss_pred ccCccHHH
Confidence 99766543
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.21 E-value=1.8e-12 Score=107.60 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=56.8
Q ss_pred chhhcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHH
Q psy11395 636 TQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIM 697 (831)
Q Consensus 636 ~~~~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~ 697 (831)
..|.-.|+.+.|+.+++||++|+|||.+++++.+|+++|++.++++++|+|||+++||+||.
T Consensus 14 ~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~ 75 (76)
T d2gdwa1 14 EIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA 75 (76)
T ss_dssp HHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred HHHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHhc
Confidence 34555677788999999999999999999999999999999999999999999999999984
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=99.12 E-value=3.8e-11 Score=101.92 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=58.8
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISK 702 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~~ 702 (831)
+.+..+.|+.+.+|+++|+|||.+++++.+|+++||++|+++.+|+|||+++|++||.+.+..
T Consensus 22 ~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l~~ 84 (86)
T d2af8a_ 22 DGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAE 84 (86)
T ss_dssp SCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHHHH
T ss_pred cCCCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHhhc
Confidence 457788999999999999999999999999999999999999999999999999999877654
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=99.08 E-value=7.6e-11 Score=101.96 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=59.3
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhhhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISKK 703 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~~~ 703 (831)
+.+..+.|..+.+|++||+|||.+++|+.+|+++||++|+++.+|+|||+++|++||.+.+...
T Consensus 21 ~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~l~~~ 84 (95)
T d1nq4a_ 21 ESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLTGA 84 (95)
T ss_dssp STTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHHHT
T ss_pred hCCChhhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHHHHHhccCC
Confidence 4677889999999999999999999999999999999999999999999999999998877543
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=1e-10 Score=105.08 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=57.2
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHh
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~ 700 (831)
+++..++|+.+.+|+ +||+|||++++|+.+|+++||+.|+.+.+|+|||+++|++||.+..
T Consensus 20 l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~~ 81 (115)
T d1klpa_ 20 TGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLE 81 (115)
T ss_dssp TCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred HCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHHHHHHHh
Confidence 578889999999997 6999999999999999999999999999999999999999997654
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=3.2e-10 Score=117.60 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--CCCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--TGPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~Gps~ 176 (831)
..|+..++.++|+++|+++++++ .|++|+..... .....++..++...|+ .-|.+
T Consensus 25 ~dL~~~a~~~al~~~~i~~~~Id----~vi~G~v~~~g-------------------~~~~n~aR~~al~aGlp~~vp~~ 81 (273)
T d1ulqa1 25 DDLLAHALSVLVDRSGVPKEEVE----DVYAGCANQAG-------------------EDNRNVARMALLLAGFPVEVAGC 81 (273)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCSS-------------------TTTTTHHHHHHHHTTCCTTCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC----EEEEEeccccc-------------------cccccHHHHHHHHcCCCCccceE
Confidence 34788899999999999999999 58888653211 1112367778888887 34999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~ 214 (831)
+|+.+|+||+.||++|++.|++|+.|++|+||+|.|..
T Consensus 82 tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS~ 119 (273)
T d1ulqa1 82 TVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119 (273)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSS
T ss_pred EEecccchHHHHHHHHHHHHhcCCCccceeeeccccch
Confidence 99999999999999999999999999999999998653
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.01 E-value=2.1e-10 Score=96.63 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=58.1
Q ss_pred hcccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhcc--CCCHHHHHHHHHHHhhh
Q psy11395 639 KLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYD--YPTLNKFFKFIMSQISK 702 (831)
Q Consensus 639 ~l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~--~pTi~~la~~l~~~~~~ 702 (831)
.+.++.+.|+++++||++|+|||.+++|+.+|+++||+++|.+.+|. +||++.|++++.+....
T Consensus 14 ~l~~~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~~~~ 79 (83)
T d2jq4a1 14 QLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLILDG 79 (83)
T ss_dssp CCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 35667899999999999999999999999999999999999999995 59999999999876543
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.99 E-value=1.3e-10 Score=119.99 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCcc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps~ 176 (831)
..|+..+..++|+++|+++++++ .|++|...... -...++..++...|+. -|++
T Consensus 28 ~dL~~~~~~~~l~~~~i~~~~Id----~vi~G~~~~~~--------------------~~~n~ar~~al~aglp~~vpa~ 83 (268)
T d1m3ka1 28 HELGATVISAVLERAGVAAGEVN----EVILGQVLPAG--------------------EGQNPARQAAMKAGVPQEATAW 83 (268)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCTT--------------------SCSCHHHHHHHHTTCCTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHCc----EEEEeeccccC--------------------cchHHHhHHHHHhCCcccccce
Confidence 36888999999999999999999 58888753211 0124677888888884 4899
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~ 214 (831)
+|+..|+||+.||++|++.|++|++|++||||+|.|..
T Consensus 84 tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS~ 121 (268)
T d1m3ka1 84 GMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121 (268)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTT
T ss_pred eecccCcccchHHHHHHHHHhCCCceEEeecccccccc
Confidence 99999999999999999999999999999999998763
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=3.8e-10 Score=108.81 Aligned_cols=119 Identities=10% Similarity=0.155 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLL 177 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps~t 177 (831)
...|..+++.+||+++|+++++++ .|++++...+|. ....+..|...||.+.+++.
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~dId----lli~~s~t~~~~--------------------~p~~a~~v~~~Lg~~~~~~d 104 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALEGVD----AVIVATNTPDAL--------------------FPDTAALVQARFGLKAFAYD 104 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTTEE----EEEEECSSCSEE--------------------ESCHHHHHHHHTTCCCEEEE
T ss_pred ccHHHHHHHHHHHhhcCcccccce----EEEEeccccccc--------------------ccchHHHHHHHhccCcccee
Confidence 567899999999999999999887 477776655541 23357788889999999999
Q ss_pred cccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecch
Q psy11395 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPL 257 (831)
Q Consensus 178 v~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~~ 257 (831)
|..+|++.+.||+.|..++++|..+.+||.++|.+..- +. ++......++||||+|+||++.
T Consensus 105 i~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~S~~-----------~~-------~~d~~~~~lfGDgAaA~ll~~~ 166 (172)
T d1ub7a1 105 LLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALSKI-----------ID-------WNDRATAVLFGDGGGAAVVGKV 166 (172)
T ss_dssp EECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGT-----------SC-------TTCHHHHTTBCCEEEEEEEECC
T ss_pred ehhccccHHHHHHHHhhhhhcCCcceeEEecccccccc-----------cC-------CCCcCeEEEecceeEEEEEEEc
Confidence 99999999999999999999999999999999975211 11 1122235578999999999865
Q ss_pred h
Q psy11395 258 S 258 (831)
Q Consensus 258 ~ 258 (831)
+
T Consensus 167 ~ 167 (172)
T d1ub7a1 167 R 167 (172)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.96 E-value=1.1e-10 Score=97.84 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=50.6
Q ss_pred ccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 646 QFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 646 ~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
.++.+.+|++||+|||.++++..+|+++||++||++.+|+|||+++|++||...
T Consensus 25 ~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~ 78 (82)
T d1or5a_ 25 AGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 78 (82)
T ss_dssp GGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTC
T ss_pred CCCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhc
Confidence 467789999999999999999999999999999999999999999999999643
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=5.1e-10 Score=94.71 Aligned_cols=62 Identities=16% Similarity=0.392 Sum_probs=58.6
Q ss_pred cccCccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHHhh
Q psy11395 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~~~ 701 (831)
+.+..+.|+++.+|++||+|||.+++|+.+|+++||++|+.+++|+++|+++|++||.+.+.
T Consensus 21 l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~~ 82 (85)
T d1vkua_ 21 MGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE 82 (85)
T ss_dssp TCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHHH
T ss_pred HCCCHHHCCCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999999999999999999999999999987664
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.7e-10 Score=107.25 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC-Ccc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG-PSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G-ps~ 176 (831)
...|+.+++.+||+++|+++++++ -|++++...+|. ....+..|...||++. +++
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~~Id----~li~~s~~~~~~--------------------~P~~a~~v~~~Lgl~~~~~~ 106 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKDQIG----LIVVATTSATHA--------------------FPSAACQIQSMLGIKGCPAF 106 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCSCS--------------------SSCHHHHHHHHHTCCSSCEE
T ss_pred chHHHHHHHHHhhhhccccccccc----EEEEecCCcccc--------------------ccchhhhhhhccCCCchhhh
Confidence 457899999999999999999988 577887765541 2346788999999985 888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
-|+.+|++++.||+.|..+|++|.++.+||.++|.+..- +.. ......+++||||+|+||++
T Consensus 107 di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~S~~-----------~~~-------~d~~~~~lfGDgA~A~vl~~ 168 (174)
T d1hnja1 107 DVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLART-----------CDP-------TDRGTIIIFGDGAGAAVLAA 168 (174)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHH-----------SCT-------TCHHHHTTBCCEEEEEEEEE
T ss_pred hhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehhhcc-----------cCC-------CCCCeEEEeceeeEEEEEEe
Confidence 999999999999999999999999999999999974210 111 11112356899999999987
Q ss_pred hh
Q psy11395 257 LS 258 (831)
Q Consensus 257 ~~ 258 (831)
.+
T Consensus 169 ~~ 170 (174)
T d1hnja1 169 SE 170 (174)
T ss_dssp ES
T ss_pred CC
Confidence 44
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=98.87 E-value=2.2e-09 Score=104.25 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC-CCcc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT-GPSL 176 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-Gps~ 176 (831)
...|..+++.+||+++|+++++++ .|++++...+|. ....+..|...++.+ .+++
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~dId----~li~~s~~~~~~--------------------~p~~a~~v~~~l~~~~~~~~ 113 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPAEID----LVVVSTMTNFVH--------------------TPPLSVAIAHELGADNAGGF 113 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC----EEEEECSCCCCC--------------------SSCHHHHHHHHHTCTTCEEE
T ss_pred HHHHhHHHHHhhhhhccCChhHCe----EEEEeccCCccc--------------------cccHHHHHHHhhcCCCccce
Confidence 467999999999999999999987 577777655441 123567788888885 4888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
-|+.+|+|++.||+.|..+|++|....+||.++|.+.. .+. ++.....+++||||+|+||++
T Consensus 114 Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~s~-----------~~~-------~~d~~~~~lfGDGAaA~ll~~ 175 (181)
T d1mzja1 114 DLSAACAGFCHALSIAADAVESGGSRHVLVVATERMTD-----------VID-------LADRSLSFLFGDGAGAAVVGP 175 (181)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGGG-----------GSC-------SSCTTTTTTBCEEEEEEEEEE
T ss_pred eHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccccc-----------cCC-------CCCcceEEEeeeeeEEEEEEe
Confidence 99999999999999999999999999999999997421 111 122234567899999999986
Q ss_pred h
Q psy11395 257 L 257 (831)
Q Consensus 257 ~ 257 (831)
.
T Consensus 176 ~ 176 (181)
T d1mzja1 176 S 176 (181)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.87 E-value=4.7e-10 Score=115.29 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCC--CCc
Q psy11395 99 QRILLELSWKTIED-AGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFT--GPS 175 (831)
Q Consensus 99 ~rl~l~aa~~ALed-AG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~--Gps 175 (831)
..|+.+++.++|++ +|+++++++ .|++|.....- .....++..++...|+- -|.
T Consensus 31 ~dL~~~~i~~~l~r~agi~~~~Id----~vi~G~v~~~~-------------------~~g~n~aR~~al~ag~p~~vp~ 87 (262)
T d1wdkc1 31 EDMSAHLISKVLERNSKVDPGEVE----DVIWGCVNQTL-------------------EQGWNIARMASLMTQIPHTSAA 87 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEE----EEEEECSSBSB-------------------TTTTTHHHHHHTTSSSCTTSEE
T ss_pred HHHHHHHHHHHHHhcCCCCHHHee----EEEEEeecccc-------------------cccccchhhhHhhhhcccccch
Confidence 46888899999995 999999998 58888653211 00113566677776763 499
Q ss_pred cccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q psy11395 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214 (831)
Q Consensus 176 ~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~ 214 (831)
++|+..|+||+.||+.|++.|++|+.|++|+||+|.|..
T Consensus 88 ~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 88 QTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred hhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 999999999999999999999999999999999998764
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=1.2e-09 Score=90.19 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=51.1
Q ss_pred ccc-CccccCCcccHhhhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHH
Q psy11395 640 LQI-KSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696 (831)
Q Consensus 640 l~l-~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l 696 (831)
+.+ ..++|+++.+||++|+|||++++|.++|+++||++|+++++|+ +|+..|+++.
T Consensus 17 Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~~-~Ti~~L~el~ 73 (76)
T d2pnga1 17 LGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVRQ-LTLRKLQEMS 73 (76)
T ss_dssp HTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHTT-CCSHHHHHTS
T ss_pred hccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHHH-hhHHHHHHHH
Confidence 456 4789999999999999999999999999999999999999985 9999998764
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=3.2e-09 Score=87.13 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=54.2
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l 696 (831)
+.++.+.|.++.+|+ +||+|||++++|+.+|+++||++++.+.+++++|++++++||
T Consensus 16 l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i 73 (74)
T d1f80d_ 16 LGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73 (74)
T ss_dssp SSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred HCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHH
Confidence 567888999999997 699999999999999999999999999999999999999997
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=4.9e-09 Score=93.55 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=80.8
Q ss_pred CCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhh
Q psy11395 264 HDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYK 343 (831)
Q Consensus 264 g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~ 343 (831)
|.+|+|+|.+++....-.. . -+.+...+++++|+++|++.+|||+||.|-.+.. -.-+..+.++-.
T Consensus 2 gl~plAri~~~a~~g~~P~--~---m~~gPv~Ai~klL~r~gl~~~Did~~EinEAFA~-----q~l~~~~~l~id---- 67 (124)
T d1afwa2 2 NLPVLGRYIDFQTVGVPPE--I---MGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAA-----QALYCIHKLGID---- 67 (124)
T ss_dssp TCCCCEEEEEEEEEECCGG--G---GGGHHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHTCC----
T ss_pred CCcEEEEEEEEEEEecCHH--H---hhhChHHHHHHHHHHcCCCcccCcEEEeccchhH-----HHHHHHHHcCCC----
Confidence 6789999999987632111 1 1346688999999999999999999999943321 111112222210
Q ss_pred cccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccc
Q psy11395 344 KNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENK 423 (831)
Q Consensus 344 ~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~ 423 (831)
..++.+...--.+|||.||||...++.++..|+++
T Consensus 68 ------~~kvN~~GGaiAlGHP~GaSGarlv~~l~~~L~~~--------------------------------------- 102 (124)
T d1afwa2 68 ------LNKVNPRGGAIALGHPLGCTGARQVATILRELKKD--------------------------------------- 102 (124)
T ss_dssp ------GGGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTT---------------------------------------
T ss_pred ------hhhccccCccceecCCcCCchHHHHHHHHHHhccC---------------------------------------
Confidence 01222322222369999999999999999988542
Q ss_pred ccEEEEcccCCCCceeEEEEcc
Q psy11395 424 LRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 424 ~r~a~v~sfG~gG~nahvil~~ 445 (831)
++++++...-||.-..+|||+
T Consensus 103 -~~glas~C~ggG~G~a~~ier 123 (124)
T d1afwa2 103 -QIGVVSMCIGTGMGAAAIFIK 123 (124)
T ss_dssp -CEEEEEEEETTTEEEEEEEEE
T ss_pred -CEEEEEEcccCCcEEEEEEEe
Confidence 346666667788888888875
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.2e-08 Score=101.65 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHH----HcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCC--C
Q psy11395 99 QRILLELSWKTIE----DAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF--T 172 (831)
Q Consensus 99 ~rl~l~aa~~ALe----dAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl--~ 172 (831)
+.|+..+..++|+ ++|+++++++ .|++|+.... + ....++..++..-|+ .
T Consensus 36 ~~L~~~~i~~~l~r~~~~~~idp~~Id----~vi~G~v~~~-------------------g-~~~~~aR~~al~aglp~~ 91 (269)
T d1afwa1 36 DYLLYNFLNEFIGRFPEPLRADLNLIE----EVACGNVLNV-------------------G-AGATEHRAACLASGIPYS 91 (269)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGGGCC----CEEEECSSSB-------------------G-GGHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHhCCccccCChhhcC----EEEecccccc-------------------c-cccccchhhhhhcccccc
Confidence 3466777788886 5679999998 4888874221 1 123467777878887 4
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q psy11395 173 GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214 (831)
Q Consensus 173 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~ 214 (831)
-|.++|+..|+||+.||+.|++.|++|+.|++|+||+|.|..
T Consensus 92 vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS~ 133 (269)
T d1afwa1 92 TPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTN 133 (269)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHH
T ss_pred ccchhccccchHHHHHHHHHHHHHhhccccceeeeecccccc
Confidence 599999999999999999999999999999999999999754
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.68 E-value=5.1e-09 Score=87.25 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=54.3
Q ss_pred cccCccccCCcccHhhhC-CChHHHHHHHHHHHhHhCCccChhhhc--cCCCHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFIDMG-LDSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFIMS 698 (831)
Q Consensus 640 l~l~~~~i~~~~~f~~lG-~dSl~a~~l~~~i~~~~g~~l~~~~lf--~~pTi~~la~~l~~ 698 (831)
+..+...++++.+|+++| +|||.+++|+.+|+++||+++|+++++ +++|++++++||.+
T Consensus 17 l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~ 78 (80)
T d1dv5a_ 17 TGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQ 78 (80)
T ss_dssp HTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHT
T ss_pred hccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHHHHH
Confidence 456778899999999986 699999999999999999999999998 89999999999964
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.67 E-value=3.9e-08 Score=96.77 Aligned_cols=117 Identities=12% Similarity=0.145 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Cc
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PS 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps 175 (831)
...|+.+++.+||+++|+++++++ .+++.++. +|. ....+..+...+++.+ +.
T Consensus 75 a~~la~~Aa~~aL~~ag~~~~dId----~lI~~s~t-~~~--------------------~P~~aa~v~~~lg~~~~~~~ 129 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAELLATDID----VIIYVSCT-GFM--------------------MPSLTAWLINEMGFDSTTRQ 129 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCS----EEEEECSS-SCC--------------------SSCHHHHHHHHTTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHcCCChhhhh----eEEEeccC-CCC--------------------cchhHHHHHHHHhcCCCeeE
Confidence 446999999999999999999988 46666543 221 1236678899999976 34
Q ss_pred ccc-ccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCC----CcceecCceE
Q psy11395 176 LLI-DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNA----DGYVRGEGAV 250 (831)
Q Consensus 176 ~tv-~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a----~G~v~gEGaa 250 (831)
+.+ ..+|++++.+|+.|..+|++|..+.+||.++|.+..-. ++-|.+. ....+||||+
T Consensus 130 ~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~S~~~-----------------~~~d~~~~~~~~~~lFgDGAa 192 (200)
T d1u0ma1 130 IPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCY-----------------QPTDLGVGSLLCNGLFGDGIA 192 (200)
T ss_dssp EEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGGGGC-----------------CTTCCSHHHHHHHHHBCEEEE
T ss_pred eccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEecccccc-----------------CCCCCChhhhhcccccccccE
Confidence 444 57999999999999999999999999999999743111 1111111 1245799999
Q ss_pred EEEecc
Q psy11395 251 MLMLKP 256 (831)
Q Consensus 251 avvL~~ 256 (831)
|+||..
T Consensus 193 A~ll~~ 198 (200)
T d1u0ma1 193 AAVVRG 198 (200)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 999964
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.61 E-value=1.2e-08 Score=90.77 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=82.3
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcc
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKN 345 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~ 345 (831)
+++|+|+++++...-.... +.+...+++++|+++|++.+|||+||.|-.+.. -.-+..+.++-.
T Consensus 2 ~Plari~~~a~~g~dP~~m-----g~~Pv~A~~~lL~r~gl~~~Did~~EinEAFA~-----q~la~~~~l~id------ 65 (124)
T d1m3ka2 2 QPLGRIVSWATVGVDPKVM-----GTGPIPASRKALERAGWKIGDLDLVEANEAFAA-----QACAVNKDLGWD------ 65 (124)
T ss_dssp CCSEEEEEEEEEECCGGGG-----GGTHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHCCC------
T ss_pred CcEEEEEEEEEEecChHHh-----ccchHHHHHHHHHHcCCChhcccHHHhcccchh-----heeeehHhhCCC------
Confidence 5788999988753211111 234577999999999999999999999933321 111112222210
Q ss_pred cccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccccc
Q psy11395 346 IKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425 (831)
Q Consensus 346 ~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r 425 (831)
..++.+...--.+|||.||||+..++.++..|+++ +.+
T Consensus 66 ----~~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L~~~--------------------------------------~~~ 103 (124)
T d1m3ka2 66 ----PSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR--------------------------------------GAR 103 (124)
T ss_dssp ----GGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH--------------------------------------TCS
T ss_pred ----hhhcCCCCCccccccCcCccchhHHHHHHHHHHhc--------------------------------------CCC
Confidence 02233322223469999999999999999999772 235
Q ss_pred EEEEcccCCCCceeEEEEcc
Q psy11395 426 IAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 426 ~a~v~sfG~gG~nahvil~~ 445 (831)
+++++...-||....++||+
T Consensus 104 ~Glas~C~gGG~g~A~liE~ 123 (124)
T d1m3ka2 104 KGLATLCIGGGMGVAMCIES 123 (124)
T ss_dssp EEEEEEEETTTEEEEEEEEC
T ss_pred EEEEEecccccceeEEEEEe
Confidence 78888888899999999985
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=9.7e-08 Score=96.17 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCCCc--
Q psy11395 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPS-- 175 (831)
Q Consensus 98 ~~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~Gps-- 175 (831)
...|+.+++.+||++||+++++++ .|+++++++++. +. .+..+...+++....
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~~dId----~lI~~t~t~~~~--------------------p~-~~a~~~~~l~~~~~~~~ 156 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPKSKIT----HLIVCTTSGVDM--------------------PG-ADYQLTKLLGLRPYVKR 156 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCC----EEEEEESSCCCS--------------------SC-HHHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHcCCChhHCc----EEEEecccCCcc--------------------Cc-cHHHHHHHHhcCCCceE
Confidence 456999999999999999999988 577777654431 11 244566667765443
Q ss_pred c-ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEe
Q psy11395 176 L-LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254 (831)
Q Consensus 176 ~-tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL 254 (831)
+ .+..+|++++.||..|..+|++|..+.+||.++|.+..... ..+..+ ++.--..+.+||||+|+||
T Consensus 157 ~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~~S~~~~----------~~d~~~--~~~~v~~~lFGDGA~A~vl 224 (235)
T d1bi5a1 157 YMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFR----------GPSDTH--LDSLVGQALFGDGAAALIV 224 (235)
T ss_dssp EEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECGGGTCC----------CCCTTC--HHHHHHHHHBCCEEEEEEE
T ss_pred EeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeeecceecC----------CCCCCc--hhhhcceeeeccceEEEEE
Confidence 3 35789999999999999999999999999999997432110 000000 0000012457999999999
Q ss_pred cch
Q psy11395 255 KPL 257 (831)
Q Consensus 255 ~~~ 257 (831)
...
T Consensus 225 ~~~ 227 (235)
T d1bi5a1 225 GSD 227 (235)
T ss_dssp ESS
T ss_pred ecC
Confidence 753
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=4.7e-08 Score=87.09 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=81.7
Q ss_pred ceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHH--Hhhhhhhhh
Q psy11395 266 NIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKN--AFHSIITYK 343 (831)
Q Consensus 266 ~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~--~f~~~~~~~ 343 (831)
+++|+|++++....-.... +.+...+++++|+++|++++|||+||.|-.+. .+.|.- .+.-..
T Consensus 1 KPlA~i~~~~~~g~~P~~~-----~~~P~~A~~~~L~r~gl~~~Did~~EinEAFA-------aq~l~~~~~~~l~~--- 65 (125)
T d1ulqa2 1 RPLARVRAIAVAGVPPRIM-----GIGPVPATRKALERAGLSFSDLGLIELNEAFA-------AQALAVLREWSLSM--- 65 (125)
T ss_dssp CCSEEEEEEEEEECCGGGG-----GGTHHHHHHHHHHHTTCCGGGCSEEEECCSBH-------HHHHHHHHHHTCCT---
T ss_pred CCeEEEEEEEEEecCHHHH-----hhccHHHHHhHhhccCcCccccchheeccccc-------hhHHHHHHHhhccC---
Confidence 4688999998753211111 23457799999999999999999999993222 222221 111000
Q ss_pred cccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccccc
Q psy11395 344 KNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENK 423 (831)
Q Consensus 344 ~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~ 423 (831)
+ ..++.+...--.+|||.||||+..++.++..|+++ +
T Consensus 66 ----d-~~kvN~~GGaIAlGHP~GASGari~~tl~~~L~~~--------------------------------------~ 102 (125)
T d1ulqa2 66 ----E-DQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR--------------------------------------K 102 (125)
T ss_dssp ----T-CTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT--------------------------------------T
T ss_pred ----c-hhhcCCCCCcccccCCccccchhHHHHHHHHHHhc--------------------------------------C
Confidence 0 01233322222369999999999999999999873 2
Q ss_pred ccEEEEcccCCCCceeEEEEcc
Q psy11395 424 LRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 424 ~r~a~v~sfG~gG~nahvil~~ 445 (831)
.+++.++...-||....++||+
T Consensus 103 ~~~G~as~C~gGG~g~A~~iE~ 124 (125)
T d1ulqa2 103 VQFGLATMCIGVGQGIAVVVEG 124 (125)
T ss_dssp CSEEEEEEEETTTEEEEEEEEE
T ss_pred CCEEEEEecccccceeEEEEEe
Confidence 3577888888899999999985
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.54 E-value=4.1e-08 Score=87.97 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=84.4
Q ss_pred CCceEEEEeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHH--Hhhhhhh
Q psy11395 264 HDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKN--AFHSIIT 341 (831)
Q Consensus 264 g~~i~a~I~g~~~~~dg~~~~~~~p~~~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~--~f~~~~~ 341 (831)
|.+++|+|++++....-.... +.+...+++++|+++|++.+|||+||.|-.. -.+++.- .+.....
T Consensus 1 Gl~pla~i~~~~~~g~dP~~m-----g~~p~~A~~klL~ragl~~~did~~EinEAF-------A~q~l~~~~~~~~~~~ 68 (128)
T d1wdkc2 1 GLEPLAVIRSMAVAGVDPAIM-----GYGPVPATQKALKRAGLNMADIDFIELNEAF-------AAQALPVLKDLKVLDK 68 (128)
T ss_dssp TCCCSEEEEEEEEEECCGGGG-----GGTHHHHHHHHHHHHTCCGGGCCEEEECCSB-------HHHHHHHHHHTTCGGG
T ss_pred CCCEEEEEEEEEEEecCHHHh-----ccCcHHHHHHHhhhcCccccccceEEeeccc-------chhhhhhhhhcccccC
Confidence 567899999998753211111 2355779999999999999999999999332 2232221 1111000
Q ss_pred hhcccccccccccccccCCCCcccchhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCcccccc
Q psy11395 342 YKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYE 421 (831)
Q Consensus 342 ~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~ 421 (831)
. ..++.+...--.+|||.||||+..++.++..|+++
T Consensus 69 ~-------~ekvN~~GGaiAlGHP~GASGaRlv~~l~~~L~~~------------------------------------- 104 (128)
T d1wdkc2 69 M-------NEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN------------------------------------- 104 (128)
T ss_dssp H-------HHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-------------------------------------
T ss_pred C-------cceecCCCCcccccccccccchhHHHHHHHHHHhc-------------------------------------
Confidence 0 01233322223469999999999999999999873
Q ss_pred ccccEEEEcccCCCCceeEEEEcc
Q psy11395 422 NKLRIAGVSSFGSGGTNAHVVLSE 445 (831)
Q Consensus 422 ~~~r~a~v~sfG~gG~nahvil~~ 445 (831)
..++++++...-||.-..++||+
T Consensus 105 -~~~~Glas~C~gGG~g~A~~iEr 127 (128)
T d1wdkc2 105 -GGTFGLSTMCIGLGQGIATVFER 127 (128)
T ss_dssp -TCSEEEEEEEETTTEEEEEEEEC
T ss_pred -CCCEEEEEecccccceeEEEEEe
Confidence 23577888888899999999985
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=6.2e-08 Score=79.82 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=56.3
Q ss_pred cccCccccCCcccHh-hhCCChHHHHHHHHHHHhHhCCccChhhhccCCCHHHHHHHHHHH
Q psy11395 640 LQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699 (831)
Q Consensus 640 l~l~~~~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~g~~l~~~~lf~~pTi~~la~~l~~~ 699 (831)
+.++++.|.++.+|. +||+|||..++|+..|+++||++++..++++++|++++++||.++
T Consensus 15 l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~ 75 (77)
T d1t8ka_ 15 LGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75 (77)
T ss_dssp HTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred HCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHc
Confidence 567889999999996 699999999999999999999999999999999999999999754
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.36 E-value=9.2e-08 Score=91.16 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcceeEEeccccchHHHHhhhccCCCCcccccCcchhHHHHHHHHHcCCCC--Ccc
Q psy11395 99 QRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG--PSL 176 (831)
Q Consensus 99 ~rl~l~aa~~ALedAG~~~~~~~~~~~gV~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G--ps~ 176 (831)
..|+.+++.++|++.+ +++++ -+++++...+| .....+..+...+++.. .++
T Consensus 51 ~~ma~~Aa~~al~~~~--~~~id----~li~~t~~~~~--------------------~~p~~a~~v~~~lg~~~~~~~~ 104 (166)
T d1xpma1 51 VSMGANAAKDIITDED--KKKIG----MVIVATESAVD--------------------AAKAAAVQIHNLLGIQPFARCF 104 (166)
T ss_dssp HHHHHHHHHTTCCHHH--HHHEE----EEEEECSSCSB--------------------SSSCHHHHHHHHTTCCSSCEEE
T ss_pred HHHHHHHHHhhhcccc--CCCCC----eEEEecccccc--------------------ccchhHHHHHHhhccccceEEe
Confidence 4588888888887764 33443 24555544443 12346778899999865 678
Q ss_pred ccccccchHHHHHHHHHHHHHcCCCCEEEEeccccccccchhHHHHHcCCCCCCCCCccccCCCCcceecCceEEEEecc
Q psy11395 177 LIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKP 256 (831)
Q Consensus 177 tv~taCsSsl~Al~~A~~~I~~G~~d~alvgGv~~~~~p~~~~~~~~~g~ls~~g~~~~Fd~~a~G~v~gEGaaavvL~~ 256 (831)
.|..+|++++.||..|..+|++|..+.+||.+.|..... ++ ..+-+.+||||+|+||.+
T Consensus 105 dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~~~--------------------~~-~~~~~~fGDGA~A~ll~~ 163 (166)
T d1xpma1 105 EMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYG--------------------LN-SGGEPTQGAGAVAMVIAH 163 (166)
T ss_dssp EEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEECCC--------------------TT-CSSGGGCEEEEEEEEEEE
T ss_pred eecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEecc--------------------CC-CCCCccCCCeeEEEEEec
Confidence 899999999999999999999999999999999863211 01 112256899999999975
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=97.78 E-value=3.6e-06 Score=85.83 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=43.6
Q ss_pred CceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccccC
Q psy11395 769 DFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDF 815 (831)
Q Consensus 769 ~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~~ 815 (831)
+|+|+||+|..|.+.++++||++|.+|+++|+++|.+||+...|+..
T Consensus 2 RVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~ 48 (270)
T d2ix4a1 2 RVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEE 48 (270)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHH
T ss_pred eEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhccccccccc
Confidence 59999999999999999999999999999999999999998877543
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=97.76 E-value=7.1e-06 Score=82.79 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=40.4
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~ 814 (831)
..|||+||+|.+|++.++++||++|.+|+++|+++| ||+...++.
T Consensus 2 ~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~--~~~~~~~~~ 46 (250)
T d1e5ma1 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPIT--RFDASDQAC 46 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCCTTSSC
T ss_pred CeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCC--ccccccccc
Confidence 579999999999999999999999999999999877 788766544
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=6.3e-05 Score=75.74 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCcccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~~ 814 (831)
.+|||+||+|..|.+.++++||++|.+|+++|++++ ||+...|..
T Consensus 2 rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~--~~~~~~~~~ 46 (250)
T d2gfva1 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID--HFDTSAYAT 46 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECC--SSCCTTCSC
T ss_pred CeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCC--cccccccCC
Confidence 479999999999999999999999999999999886 777766654
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.33 E-value=4.4e-05 Score=75.02 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=34.2
Q ss_pred CceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 769 DFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 769 ~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
+|||+||+|.+|++.++++||++|.+|+++|+++|.
T Consensus 2 RVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~ 37 (216)
T d1tqya1 2 RVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISF 37 (216)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCS
T ss_pred eEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCc
Confidence 699999999999999999999999999999999873
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.25 E-value=5.8e-05 Score=73.68 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=37.6
Q ss_pred ceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 770 FEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 770 iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
|+|+||+|..|++.++++||++|.+|+++|++++ ||+.+.|.
T Consensus 2 VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~--~~~~~~~~ 43 (208)
T d1tqyb1 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT--RFDVSRYP 43 (208)
T ss_dssp EEEEEEEEEETTEESHHHHHHHHHTTCCCEEECT--TTTGGGSS
T ss_pred EEEEcceeECCCcCCHHHHHHHHHcCCCceecCc--ccCchhcc
Confidence 8999999999999999999999999999999875 77766554
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=5.8e-05 Score=75.99 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=38.7
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCCCCCCcCccc
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~~r~~~~~~~ 813 (831)
.+|||+||++.+|++.++++||++|.+|+++|.+++ ||+...|+
T Consensus 2 ~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~--~~~~~~~~ 45 (249)
T d1j3na1 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPIT--RFDASALP 45 (249)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECC--SSCCTTSS
T ss_pred CcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCC--ccccccCC
Confidence 369999999999999999999999999999999776 67765553
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00066 Score=67.87 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=34.4
Q ss_pred CCceeecceeecCCCCCHHHHHHHhhcCCcccccCCC
Q psy11395 768 DDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIAS 804 (831)
Q Consensus 768 ~~iaivg~~~r~pga~~~~~~w~~l~~g~~~~~~~p~ 804 (831)
.+|+|+||++..|++.++++||++|.+|+++|+++|.
T Consensus 2 ~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~ 38 (253)
T d2vbaa1 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQE 38 (253)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHH
T ss_pred CcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCc
Confidence 3699999999999999999999999999999998874
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.55 E-value=0.05 Score=49.18 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhh
Q psy11395 291 IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370 (831)
Q Consensus 291 ~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG 370 (831)
....++|+++|+++|++++|||++..|-.+. .=.+++.+.++-.. .+.... +-..+||+.+|+=
T Consensus 48 ~~v~~~i~~~L~~~gl~~~dId~~i~Hqa~~-----~i~~~v~~~lgl~~----------ek~~~~-~~~~~GNt~sasi 111 (148)
T d1u6ea2 48 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANS-----RINELLVKNLQLRP----------DAVVAN-DIEHTGNTSAASI 111 (148)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCSCH-----HHHHHHHHHHTCCT----------TCEECC-THHHHCBCGGGHH
T ss_pred HHHHHHHHHHHHHcCCCcccccEEEeccccH-----HHHHHHHHhcCCCc----------hhhhhh-hHHhhCCCccchH
Confidence 3456789999999999999999999994443 33455555554210 112221 2234699988886
Q ss_pred HHHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 371 ITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 371 ~~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
...|..++ +.+.+. +..+.++.+||.|=+-+++||+
T Consensus 112 p~~L~~a~---~~g~i~-----------------------------------~Gd~vll~gfG~G~s~~a~llr 147 (148)
T d1u6ea2 112 PLAMAELL---TTGAAK-----------------------------------PGDLALLIGYGAGLSYAAQVVR 147 (148)
T ss_dssp HHHHHHHH---HHTSSC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHH---HcCCCC-----------------------------------CCCEEEEEEEchhhhheEEEEe
Confidence 66655543 333321 1245778899988777788774
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=93.06 E-value=0.17 Score=45.47 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhH
Q psy11395 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371 (831)
Q Consensus 292 ~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~ 371 (831)
...++|+++|+++|++++|||++..|-.+- .=.+.+.+.++-.. .+.+ ..+ ...||+.+|+=.
T Consensus 48 ~vp~~i~~~L~~~g~~~~dId~~i~Hqa~~-----~~~~~i~~~lgi~~----------~k~~-~~~-~~~Gn~~sasip 110 (149)
T d1ub7a2 48 VMNTATLEAIEKAGLTPEDIRLFVPHQANL-----RIIDAARERLGLPW----------ERVA-VNV-DRYGNTSTASIP 110 (149)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECCSCH-----HHHHHHHHTTTCCG----------GGBC-CCH-HHHCBCGGGHHH
T ss_pred HHHHHHHHHHHhhccccccccEEEeeccch-----HHHHHHHhhccchh----------hHHH-HHH-HHhcCCcchhHH
Confidence 345789999999999999999999994443 23334444443110 1121 122 346999888766
Q ss_pred HHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 372 TGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 372 ~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
..|..+ ++.+.+. +....++.+||.|-+-+.+||+
T Consensus 111 ~~L~~~---~~~~~~~-----------------------------------~Gd~vll~g~G~G~s~ga~llr 145 (149)
T d1ub7a2 111 LALKEA---VDAGRIR-----------------------------------EGDHVLLVSFGAGLTWAAAVLT 145 (149)
T ss_dssp HHHHHH---HHHTSSC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHH---HHcCCCC-----------------------------------CCCEEEEEEEchHhhhEEEEEE
Confidence 554433 3433221 2246788999998888888876
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.19 Score=44.87 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhhhhhhhhcccccccccccccccCCCCcccchhhhH
Q psy11395 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371 (831)
Q Consensus 292 ~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~~~~~~~~~~~~~~~~~~vgs~K~~iGH~~~AsG~ 371 (831)
...++++++|+++|++++|||++-.|-.+... .+++.+.++-.. .+++ ..-..+||+.+|+=.
T Consensus 45 ~~~~~i~~~L~~~g~~~~dId~~i~Hq~~~~~-----~~~~~~~l~l~~----------~k~~--~~~~~~GN~~sasip 107 (143)
T d1hnja2 45 ELAHIVDETLAANNLDRSQLDWLVPHQANLRI-----ISATAKKLGMSM----------DNVV--VTLDRHGNTSAASVP 107 (143)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH-----HHHHHHHTTCCG----------GGBC--CCHHHHCBCGGGHHH
T ss_pred hhhHHHHHHHHHhhhcccccceEEeccCchHH-----HHHHHHhCccch----------hhhh--hhhhhhcccccchHH
Confidence 35678999999999999999999999555432 333444443210 1122 122357999988866
Q ss_pred HHHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCceeecccccCccccccccccEEEEcccCCCCceeEEEEc
Q psy11395 372 TGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444 (831)
Q Consensus 372 ~~lik~~l~L~~~~ipp~~~~~~~n~~i~~~~~~~~~~~~~~~w~~~~~~~~~r~a~v~sfG~gG~nahvil~ 444 (831)
..|-.+ ++.+.+- +....++.+||.|=+-++++|+
T Consensus 108 ~~L~~~---~~~~~~~-----------------------------------~Gd~vll~g~G~G~s~g~~llr 142 (143)
T d1hnja2 108 CALDEA---VRDGRIK-----------------------------------PGQLVLLEAFGGGFTWGSALVR 142 (143)
T ss_dssp HHHHHH---HHTTCSC-----------------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHH---HHhCCCC-----------------------------------CCCEEEEEEEehhhhhEEEEEE
Confidence 555443 3333221 1245788889988887888775
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.40 E-value=0.32 Score=43.55 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhh
Q psy11395 291 IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH 337 (831)
Q Consensus 291 ~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~ 337 (831)
.....+++++|+++|++++||||+-.|=.+. .=.+.+.+.++
T Consensus 43 ~~~~~~i~~~l~~~g~~~~did~~~~Hq~~~-----~i~~~i~~~Lg 84 (148)
T d1u0ma2 43 EPLAPALKELAGEHGWDASDLDFYIVHAGGP-----RILDDLSTFLE 84 (148)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSCCEEECSHH-----HHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEECCCCH-----HHHHHHHHHhC
Confidence 4567889999999999999999999994443 33445555554
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=86.48 E-value=1.2 Score=39.81 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEecCCCCCCCCHHHHHHHHHHhh
Q psy11395 291 IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH 337 (831)
Q Consensus 291 ~~~~~~i~~al~~Agl~~~dId~ie~HgtGT~~gD~~E~~al~~~f~ 337 (831)
....++++++|+++|++++|||++..|-.+ ..=.+++.+.++
T Consensus 48 ~~vp~~i~~~L~~~gl~~~dId~~i~Hq~~-----~~~~~~v~~~lg 89 (153)
T d1mzja2 48 ADVVPAAREALEVAGLTVGDLVAFVPHQAN-----LRIIDVLVDRLG 89 (153)
T ss_dssp HHHHHHHHHHHHTTTCCGGGCSEEEECCSC-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCCEEEEcCCc-----HHHHHHHHHHhC
Confidence 455678999999999999999999999554 333444555444
|