Psyllid ID: psy11399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-----
MAIPFPTTPDISNDLNFGNSIFTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEccccccccccEEEEEEcccccccEEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccEEEEEEcccEEEEEcccccccccccccHHHHHHHHHcccccccccccccHHHHHHccccEEccEEEEEcccccccEEEEEcccccccccccccccccccccEEEEHHHHHHHHcccccccccccEEEEcccccccccccccEEEcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHccccEEcccEEEEEEEEEccccEEEcccccccccccccccccccccccccccccccEEEccccEEcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHccccccEEEEccccccccccccEEEEEEEEcccccccccccHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHccccccccccccccEEEc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccEEEEEEEcccccccEEEEEEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEcccccccccccccccccccEEEEccccccccccccccEEEEEccHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEEEcccccEEEEEEccccccccccEccccccccccEEEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEccccEEEEccccEEEEcccccccccccccccccccccccEEEccccEEEccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccccEcEEEEEcccEEEEEEEEEcccccccccHHHHHHEEEEEEEEEccccEEEccccccccccccEEEEEccccccccccccccEEEEEEEcccccHHHHEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHcHHHcHEEEcc
maipfpttpdisndlnfgnsiftcggqtkcagapppgapgappgpvappgavpappgamglippnqppqpvqppelpmfncprrpnlgregrpiVLRANhfqismprgfvhhyeiqiqpdkcprkVNREIIETMVHAYSKIFGAlkpvfdgrnnlytrdplpigndrmelevtlpgegkdRVFRVAIKWQAQVSLFALEEALegrtrqipfdAILALDVVMrhlpsmtytpvgrsffstpdgyyhplgggrevwfgfhqsvrpsqwkMMLNIDVSATafyksqpviEFMCEVLdirdvneqrkpltdsqrVKFTKEIKGLKIEithcgtmkrkyrvcnvtrrpaqmqsfplqlengqtvECTVAKYFLDKYkmklrfphlpclqvgqehkhtylplevcnivAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKradfnndayVHEFGLTISNSMmevrgrvlpppklqyggrmssITAQVNSMssqglfaskqqalpnsgvwdmrgkqfyTGVEIRVWAIAcfapqrtvreDSLRSFTQQLQKIsndagmpiigqpcfckyatgpdqvepMFRYLKSTFQALQLVVVVlpgktpvyAEVKRVGDTVLGMATQCVqaknvnktspqtlsnLCLKINVklgginsilvpsirpkvfnepvifmgadvthppagdnkkpsIAAVVGsmdahpsrYAATVRVQQHRQEIIQELSSMVRLFCadkkeqsgksgnipagttvdigithptefdfylcshqgiqgtsrpshyhvlwddnhfdadelqcltyqlchtyvrctrsvsipapayYAHLVAFRARYHLVekehdsgegshqsgssedrtpgAMARAITVHADTKKVMYFA
maipfpttpdisndlNFGNSIFTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYtrdplpigndrMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDvneqrkpltdsqrvkftkeikglkieithcgtmkrkYRVCNVTRRPAQMqsfplqlengqtVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTmikatarsapdreREIQSLvkradfnndaYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQaknvnktspqtlSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGadvthppagdNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKeqsgksgnipagttVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHdsgegshqsgssedrtpgAMARAItvhadtkkVMYFA
MAIPFPTTPDISNDLNFGNSIFTCGGQTKCagapppgapgappgpvappgavpappgaMGLIppnqppqpvqppelpMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKehdsgegshqsgssedRTPGAMARAITVHADTKKVMYFA
**************LNFGNSIFTCGGQ****************************************************************RPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNE********QRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDM**********************LVKRADFNNDAYVHEFGLTISNSMMEVRG***************************************SGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVT*************************YAATVRVQQHRQEIIQELSSMVRLFCA***********IPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV*****************************************
*****************************************************************************************EGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELE*******KDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFST*****HPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQ**********GQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRC************I*ATARSAPDREREIQSLVKR*DFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHP*******PS*AAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARY******************************ITVHADTKKVMYFA
MAIPFPTTPDISNDLNFGNSIFTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIK************IQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEK********************AMARAITVHADTKKVMYFA
******************************************************************************FNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSS*****SKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVE**********************MARAITVHADTKKVMYFA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPFPTTPDISNDLNFGNSIFTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query865 2.2.26 [Sep-21-2011]
Q8CJG1857 Protein argonaute-1 OS=Mu yes N/A 0.728 0.735 0.710 0.0
Q9UL18857 Protein argonaute-1 OS=Ho no N/A 0.728 0.735 0.710 0.0
Q9UKV8859 Protein argonaute-2 OS=Ho yes N/A 0.721 0.726 0.718 0.0
Q9QZ81860 Protein argonaute-2 OS=Ra no N/A 0.721 0.725 0.718 0.0
Q8CJG0860 Protein argonaute-2 OS=Mu no N/A 0.721 0.725 0.718 0.0
Q6DJB9871 Protein argonaute-2 OS=Xe no N/A 0.731 0.726 0.720 0.0
Q6QME8860 Protein argonaute-2 OS=Bo no N/A 0.721 0.725 0.716 0.0
Q6DCX2862 Protein argonaute-2 OS=Xe N/A N/A 0.721 0.723 0.718 0.0
O77503840 Protein argonaute-2 (Frag no N/A 0.721 0.742 0.715 0.0
Q4KLV6884 Protein argonaute-4 OS=Xe N/A N/A 0.727 0.711 0.698 0.0
>sp|Q8CJG1|AGO1_MOUSE Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1 SV=2 Back     alignment and function desciption
 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/649 (71%), Positives = 534/649 (82%), Gaps = 19/649 (2%)

Query: 73  PPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIE 132
           PP   +F  PRRP +G  G+PI L AN+F++ +P+  V+HYE+ I+PDKCPR+VNRE++E
Sbjct: 15  PPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVE 74

Query: 133 TMV-HAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQA 191
            MV H   +IFG  KPV+DG+ N+YT   LPIGN+R++ EVT+PGEGKDR+F+V+IKW A
Sbjct: 75  YMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLA 134

Query: 192 QVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGR 251
            VS   L EAL      +P +++ ALDV MRHL SM YTPVGRSFFS P+GYYHPLGGGR
Sbjct: 135 IVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGR 194

Query: 252 EVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRV 311
           EVWFGFHQSVRP+ WKMMLNIDVSATAFYK+QPVIEFMCEVLDIR+++EQ KPLTDSQRV
Sbjct: 195 EVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRV 254

Query: 312 KFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKY 371
           +FTKEIKGLK+E+THCG MKRKYRVCNVTRRPA  Q+FPLQLE+GQTVECTVA+YF  KY
Sbjct: 255 RFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKY 314

Query: 372 KMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDRE 431
            ++L++PHLPCLQVGQE KHTYLPLEVCNIVAGQRCIKKLTD QTSTMIKATARSAPDR+
Sbjct: 315 NLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQ 374

Query: 432 REIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSS 491
            EI  L+K A +N D Y+ EFG+ + + M EV GRVLP P LQYGGR  +I         
Sbjct: 375 EEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAI--------- 425

Query: 492 QGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKIS 551
                    A PN GVWDMRGKQFY G+EI+VWAIACFAPQ+  RE+ L++FT QL+KIS
Sbjct: 426 ---------ATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKIS 476

Query: 552 NDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDT 611
            DAGMPI GQPCFCKYA G D VEPMFR+LK+T+  LQL++V+LPGKTPVYAEVKRVGDT
Sbjct: 477 KDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDT 536

Query: 612 VLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADV 671
           +LGMATQCVQ KNV KTSPQTLSNLCLKINVKLGGIN+ILVP  R  VF +PVIF+GADV
Sbjct: 537 LLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADV 596

Query: 672 THPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
           THPPAGD KKPSI AVVGSMDAHPSRY ATVRVQ+ RQEII++LS MVR
Sbjct: 597 THPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVR 645
Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. May also be required for transcriptional gene silencing (TGS) of promoter regions which are complementary to bound short antigene RNAs (agRNAs).
Mus musculus (taxid: 10090)
>sp|Q9UL18|AGO1_HUMAN Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3 Back     alignment and function description
>sp|Q9UKV8|AGO2_HUMAN Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1 SV=3 Back     alignment and function description
>sp|Q9QZ81|AGO2_RAT Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2 PE=2 SV=2 Back     alignment and function description
>sp|Q8CJG0|AGO2_MOUSE Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1 SV=3 Back     alignment and function description
>sp|Q6DJB9|AGO2_XENTR Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1 Back     alignment and function description
>sp|Q6QME8|AGO2_BOVIN Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DCX2|AGO2_XENLA Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE=2 SV=1 Back     alignment and function description
>sp|O77503|AGO2_RABIT Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=EIF2C2 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLV6|AGO4_XENLA Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query865
383850961928 PREDICTED: protein argonaute-2 [Megachil 0.809 0.754 0.857 0.0
322799627929 hypothetical protein SINV_07891 [Solenop 0.815 0.758 0.853 0.0
307169521930 Eukaryotic translation initiation factor 0.813 0.756 0.852 0.0
157132400947 eukaryotic translation initiation factor 0.813 0.743 0.863 0.0
170039525964 eukaryotic translation initiation factor 0.796 0.714 0.866 0.0
350426673928 PREDICTED: protein argonaute-2-like [Bom 0.809 0.754 0.841 0.0
328792920928 PREDICTED: protein argonaute-2 [Apis mel 0.809 0.754 0.839 0.0
307209001921 Eukaryotic translation initiation factor 0.805 0.756 0.855 0.0
340723550928 PREDICTED: protein argonaute-2-like [Bom 0.809 0.754 0.840 0.0
270012749919 argonaute 1 [Tribolium castaneum] 0.772 0.726 0.873 0.0
>gi|383850961|ref|XP_003701032.1| PREDICTED: protein argonaute-2 [Megachile rotundata] Back     alignment and taxonomy information
 Score = 1276 bits (3302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/715 (85%), Positives = 651/715 (91%), Gaps = 15/715 (2%)

Query: 9   PDISNDLNFGNSIFTCGGQTKCA--GAPPPG-APGAPPGPVAPPGAVPAPPGAMGLIPPN 65
           PD+S+ L    ++   G    C    APPPG    +  G     G+    P ++GL+P  
Sbjct: 13  PDLSS-LRITTAVSMLGKAYGCGQCSAPPPGPTTSSSVGAAGSTGSSVVAPSSLGLVPAQ 71

Query: 66  QPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRK 125
           Q   P QPPELPMF+CPRRPN+GREGRPI LRANHFQI+MPRG+VHHY+I IQPDKCPRK
Sbjct: 72  QTHTPPQPPELPMFSCPRRPNIGREGRPIGLRANHFQITMPRGYVHHYDINIQPDKCPRK 131

Query: 126 VNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRV 185
           VNREIIETMVHAYSKIFG LKPVFDGRNNLYTRDPLPIG D++ELEVTLPGEGKDRVFRV
Sbjct: 132 VNREIIETMVHAYSKIFGTLKPVFDGRNNLYTRDPLPIGTDKIELEVTLPGEGKDRVFRV 191

Query: 186 AIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYH 245
            IKW AQVSLFALEEALEGRTRQIP+DAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYH
Sbjct: 192 VIKWLAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYH 251

Query: 246 PLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPL 305
           PLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYK+QPVIEFMCEVLDIRD+N+QRKPL
Sbjct: 252 PLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINDQRKPL 311

Query: 306 TDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAK 365
           TDSQRVKFTKEIKGLKIEITHCGTM+RKYRVCNVTR+PAQMQSFPLQLENGQTVECTVAK
Sbjct: 312 TDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAK 371

Query: 366 YFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATAR 425
           YFLDKYKMKLR+PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATAR
Sbjct: 372 YFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATAR 431

Query: 426 SAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQ 485
           SAPDREREI +LV+RADFNND+YV EFGL ISN+MMEVRGRVLPPPKLQYGGR+SS++ Q
Sbjct: 432 SAPDREREINNLVRRADFNNDSYVQEFGLAISNNMMEVRGRVLPPPKLQYGGRVSSLSGQ 491

Query: 486 VNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQ 545
                      +KQQA+PN GVWDMRGKQF+TGVEIRVWAIACFAPQRTVRED+LR FT 
Sbjct: 492 -----------TKQQAMPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRMFTT 540

Query: 546 QLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEV 605
           QLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLK+TF +LQLV VVLPGKTPVYAEV
Sbjct: 541 QLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKTTFASLQLVCVVLPGKTPVYAEV 600

Query: 606 KRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVI 665
           KRVGDT+LGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVI
Sbjct: 601 KRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVI 660

Query: 666 FMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
           F+GADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR
Sbjct: 661 FLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 715

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322799627|gb|EFZ20899.1| hypothetical protein SINV_07891 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307169521|gb|EFN62163.1| Eukaryotic translation initiation factor 2C 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157132400|ref|XP_001662554.1| eukaryotic translation initiation factor 2c [Aedes aegypti] gi|108871199|gb|EAT35424.1| AAEL012410-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|170039525|ref|XP_001847582.1| eukaryotic translation initiation factor 2C 2 [Culex quinquefasciatus] gi|167863100|gb|EDS26483.1| eukaryotic translation initiation factor 2C 2 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|350426673|ref|XP_003494508.1| PREDICTED: protein argonaute-2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328792920|ref|XP_624444.3| PREDICTED: protein argonaute-2 [Apis mellifera] gi|380022470|ref|XP_003695068.1| PREDICTED: protein argonaute-2-like [Apis florea] Back     alignment and taxonomy information
>gi|307209001|gb|EFN86201.1| Eukaryotic translation initiation factor 2C 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340723550|ref|XP_003400152.1| PREDICTED: protein argonaute-2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|270012749|gb|EFA09197.1| argonaute 1 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query865
FB|FBgn0262739984 AGO1 "Argonaute-1" [Drosophila 0.736 0.647 0.910 0.0
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.475 0.477 0.699 4.39999997751e-316
UNIPROTKB|Q9UKV8859 EIF2C2 "Protein argonaute-2" [ 0.475 0.478 0.699 4.39999997751e-316
MGI|MGI:2446632860 Ago2 "argonaute RISC catalytic 0.475 0.477 0.699 5.20000001384e-316
RGD|621255860 Ago2 "argonaute RISC catalytic 0.475 0.477 0.699 5.20000001384e-316
UNIPROTKB|Q6QME8860 EIF2C2 "Protein argonaute-2" [ 0.475 0.477 0.699 6.00000000077e-315
UNIPROTKB|O77503840 EIF2C2 "Protein argonaute-2" [ 0.475 0.489 0.696 6.00000000077e-315
UNIPROTKB|F1PGP5857 EIF2C1 "Uncharacterized protei 0.468 0.472 0.701 7.6999999977e-315
UNIPROTKB|Q9UL18857 EIF2C1 "Protein argonaute-1" [ 0.468 0.472 0.701 7.6999999977e-315
UNIPROTKB|F1SV63857 EIF2C1 "Uncharacterized protei 0.468 0.472 0.701 7.6999999977e-315
FB|FBgn0262739 AGO1 "Argonaute-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 3122 (1104.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 588/646 (91%), Positives = 618/646 (95%)

Query:    78 MFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHA 137
             +F CPRRPNLGREGRPIVLRANHFQ++MPRG+VHHY+I IQPDKCPRKVNREIIETMVHA
Sbjct:   132 VFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHA 191

Query:   138 YSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFA 197
             YSKIFG LKPVFDGRNNLYTRDPLPIGN+R+ELEVTLPGEGKDR+FRV IKWQAQVSLF 
Sbjct:   192 YSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFN 251

Query:   198 LEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGF 257
             LEEALEGRTRQIP+DAILALDVVMRHLPSMTYTPVGRSFFS+P+GYYHPLGGGREVWFGF
Sbjct:   252 LEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGF 311

Query:   258 HQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEI 317
             HQSVRPSQWKMMLNIDVSATAFYK+QPVI+FMCEVLDIRD+NEQRKPLTDSQRVKFTKEI
Sbjct:   312 HQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEI 371

Query:   318 KGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRF 377
             KGLKIEITHCG M+RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKY+MKLR+
Sbjct:   372 KGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRY 431

Query:   378 PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSL 437
             PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREI +L
Sbjct:   432 PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNL 491

Query:   438 VKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFAS 497
             VKRADFNND+YV EFGLTISNSMMEVRGRVLPPPKLQYGGR+S+       ++ Q LF  
Sbjct:   492 VKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVST------GLTGQQLFPP 545

Query:   498 KQQ---ALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDA 554
             + +   A PN GVWDMRGKQF+TGVEIR+WAIACFAPQRTVRED+LR+FTQQLQKISNDA
Sbjct:   546 QNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDA 605

Query:   555 GMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLG 614
             GMPIIGQPCFCKYATGPDQVEPMFRYLK TF  LQLVVVVLPGKTPVYAEVKRVGDTVLG
Sbjct:   606 GMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLG 665

Query:   615 MATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHP 674
             MATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIF+GADVTHP
Sbjct:   666 MATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHP 725

Query:   675 PAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
             PAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR
Sbjct:   726 PAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 771
GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IMP
GO:0016246 "RNA interference" evidence=TAS
GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IDA;IMP
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP
GO:0019899 "enzyme binding" evidence=IPI
GO:0035195 "gene silencing by miRNA" evidence=IMP;NAS
GO:0007416 "synapse assembly" evidence=TAS
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006342 "chromatin silencing" evidence=IMP
GO:0007367 "segment polarity determination" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0006402 "mRNA catabolic process" evidence=IGI;IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0036099 "female germ-line stem cell maintenance" evidence=IMP
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0030529 "ribonucleoprotein complex" evidence=IDA
GO:0030727 "germarium-derived female germ-line cyst formation" evidence=IMP
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP
GO:0017148 "negative regulation of translation" evidence=IMP
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2446632 Ago2 "argonaute RISC catalytic subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621255 Ago2 "argonaute RISC catalytic component 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O77503 EIF2C2 "Protein argonaute-2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGP5 EIF2C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UL18 EIF2C1 "Protein argonaute-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV63 EIF2C1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UKV8AGO2_HUMAN3, ., 1, ., 2, 6, ., n, 20.71850.72130.7264yesN/A
O77503AGO2_RABIT3, ., 1, ., 2, 6, ., n, 20.71530.72130.7428noN/A
Q6K972AGO1C_ORYSJNo assigned EC number0.37910.73410.6280yesN/A
Q6DCX2AGO2_XENLA3, ., 1, ., 2, 6, ., n, 20.71890.72130.7238N/AN/A
Q9UL18AGO1_HUMANNo assigned EC number0.71030.72830.7351noN/A
Q9QZ81AGO2_RAT3, ., 1, ., 2, 6, ., n, 20.71850.72130.7255noN/A
Q8CJG1AGO1_MOUSENo assigned EC number0.71030.72830.7351yesN/A
Q8CJG0AGO2_MOUSE3, ., 1, ., 2, 6, ., n, 20.71850.72130.7255noN/A
Q5ZMW0AGO4_CHICKNo assigned EC number0.70350.65540.7141noN/A
Q6DJB9AGO2_XENTR3, ., 1, ., 2, 6, ., n, 20.72040.73170.7267noN/A
Q6QME8AGO2_BOVIN3, ., 1, ., 2, 6, ., n, 20.71690.72130.7255noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query865
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-102
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 8e-95
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-79
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 6e-66
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 3e-65
pfam02171296 pfam02171, Piwi, Piwi domain 7e-42
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 4e-41
pfam02170114 pfam02170, PAZ, PAZ domain 5e-38
pfam02171296 pfam02171, Piwi, Piwi domain 3e-33
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 3e-30
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 3e-27
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 7e-24
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 5e-22
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 1e-20
smart00949138 smart00949, PAZ, This domain is named PAZ after th 8e-09
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 2e-06
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 9e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 5e-04
pfam12526115 pfam12526, DUF3729, Protein of unknown function (D 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  322 bits (827), Expect = e-102
 Identities = 127/279 (45%), Positives = 167/279 (59%), Gaps = 30/279 (10%)

Query: 448 YVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGV 507
           Y+ EFG+++S  M+ V GRVLPPPKL+YG                      +   P +G 
Sbjct: 2   YLKEFGISVSKEMITVPGRVLPPPKLKYGDS-------------------SKTVPPRNGS 42

Query: 508 WDMRGKQFYTGVEIRVWAIACFAPQRTVRED--SLRSFTQQLQKISNDAGMPIIGQPCFC 565
           W++RGK+F  G  IR WA+  FA  R  RE+   LR+F  QL K    AG+ I       
Sbjct: 43  WNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFVDQLVKTVIGAGINIT-----T 97

Query: 566 KYATGPDQVEPMFRYLK-STFQALQLVVVVLPGK-TPVYAEVKRVGDTVLGMATQCVQAK 623
             A+   +VE +F  LK +  +  QLV+V+LP K + +Y  +KR+ DT LG+ TQCV AK
Sbjct: 98  AIASVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAK 157

Query: 624 NVNK-TSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDN-KK 681
            V K  +PQ  +N+ LKIN+KLGGIN  L P IRP +  EP + +GADVTHP  GD    
Sbjct: 158 KVTKKGNPQYFANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAGA 217

Query: 682 PSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
           PSIAAVV S+D H ++Y A+VR+Q HRQEII +L SMVR
Sbjct: 218 PSIAAVVASVDWHLAQYPASVRLQSHRQEIIDDLESMVR 256

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 865
PLN03202900 protein argonaute; Provisional 100.0
KOG1041|consensus876 100.0
KOG1042|consensus845 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.86
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.78
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.78
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.67
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.48
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.29
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.4
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 98.38
KOG1924|consensus1102 94.87
PF13032138 DUF3893: Domain of unknown function (DUF3893) 91.55
KOG1924|consensus1102 90.25
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-144  Score=1318.47  Aligned_cols=740  Identities=33%  Similarity=0.584  Sum_probs=626.6

Q ss_pred             CCCCCCCCCCCCCCCCeeEEEeeEEEeec--CceeEEEEEEEEccC----CCChhhHHHHHHHHHHHHhhhcCCCceEEe
Q psy11399         77 PMFNCPRRPNLGREGRPIVLRANHFQISM--PRGFVHHYEIQIQPD----KCPRKVNREIIETMVHAYSKIFGALKPVFD  150 (865)
Q Consensus        77 ~~~~~p~RP~~Gt~G~~i~L~tN~f~l~~--p~~~iy~YdV~i~p~----~~~~~~~r~i~~~l~~~~~~~f~~~~~vyD  150 (865)
                      ....+++||||||.|++|.|+||||+|.+  |+..+|||||+|+|+    ..+++++++|+++++++++..+.+..++||
T Consensus        29 ~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~D  108 (900)
T PLN03202         29 PKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYD  108 (900)
T ss_pred             cccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeec
Confidence            34478899999999999999999999997  467899999999974    334677888988887766544544468999


Q ss_pred             CCceEEecCCCCCCCCceEEEEEcCCC----------------------------CCCcEEEEEEEEeeeecHHHHHHHH
Q psy11399        151 GRNNLYTRDPLPIGNDRMELEVTLPGE----------------------------GKDRVFRVAIKWQAQVSLFALEEAL  202 (865)
Q Consensus       151 G~~~LyS~~~L~~~~~~~~~~v~~~~~----------------------------~~~~~~~V~Ik~~~~i~l~~L~~~l  202 (865)
                      |+++|||+.+|+.+.  .++.|.++.+                            ++.+.|+|+|+++++|++++|.+|+
T Consensus       109 g~~~l~s~~~L~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l  186 (900)
T PLN03202        109 GEKSLFTVGALPQNK--LEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANAL  186 (900)
T ss_pred             CccceEECccCCCCC--ceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHH
Confidence            999999999999744  3555544311                            1257899999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHhcCCCC-ccccccccccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeec
Q psy11399        203 EGRTRQIPFDAILALDVVMRHLPSM-TYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYK  281 (865)
Q Consensus       203 ~g~~~~~~~~~iq~Lniilr~~~~~-~~~~~Gr~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~  281 (865)
                      .|.....+.++||+||+|||+.++. +++.+||+||........++++|+|+|+||++|||+++++++||||+++++|++
T Consensus       187 ~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~  266 (900)
T PLN03202        187 RGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQ  266 (900)
T ss_pred             cCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeec
Confidence            9998888889999999999998765 488899999986644555789999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCC-----C
Q psy11399        282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLEN-----G  356 (865)
Q Consensus       282 ~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~-----g  356 (865)
                      ++||+|+|.++.+..+       ....++.++.++|+|++|.++|.+   ++|+|.+|++.+++..+|.++..+     +
T Consensus       267 ~~~l~~~l~~~~~~~~-------~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~  336 (900)
T PLN03202        267 PGPVVDFLIANQNVRD-------PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEV  336 (900)
T ss_pred             CCcHHHHHHHhcCcCC-------ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccC
Confidence            9999999998764321       112345679999999999999863   789999999999999999654221     1


Q ss_pred             ceeeeeHHHHHHHhCCCccCCC-CCceEEeCCCCcccccccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHH
Q psy11399        357 QTVECTVAKYFLDKYKMKLRFP-HLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQ  435 (865)
Q Consensus       357 ~~~~iTV~eYf~~~Y~i~L~~p-~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~  435 (865)
                      .+.+|||+|||+++||++|+|| ++|||++|+..+++|||||||.|.+||+++.+|++.|+++||++++.+|.+|.+.|.
T Consensus       337 ~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~  416 (900)
T PLN03202        337 ETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLT  416 (900)
T ss_pred             CcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHH
Confidence            2347999999999999999996 999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccccccCcee
Q psy11399        436 SLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQF  515 (865)
Q Consensus       436 ~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f  515 (865)
                      ++++.++++.+++|++|||+|+++|++|+||+|++|+|.|+++..                    ..|.+|+||+++++|
T Consensus       417 ~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~--------------------~~p~~g~Wn~~~~kf  476 (900)
T PLN03202        417 DALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGED--------------------FFPRNGRWNFNNKKL  476 (900)
T ss_pred             HHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcc--------------------cCCCCCceecCCCEe
Confidence            999988888889999999999999999999999999999987532                    356789999999999


Q ss_pred             ecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeec-------cCCCCCHHHHHHHHHhhc-CC
Q psy11399        516 YTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKY-------ATGPDQVEPMFRYLKSTF-QA  587 (865)
Q Consensus       516 ~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~-------~~~~~~~e~~~~~l~~~~-~~  587 (865)
                      +.|+.+++|+|+++...     ..++.|++.|.+.|+.+||.+ ..|.....       ....+.++.+++.+++.. ..
T Consensus       477 ~~~~~l~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~G~~i-~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  550 (900)
T PLN03202        477 VEPTKIERWAVVNFSAR-----CDIRHLVRDLIKCGEMKGINI-EPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGP  550 (900)
T ss_pred             cCCCccceEEEEEecCc-----hhHHHHHHHHHHHHHHCCcee-CCCccccccccccccccchHHHHHHHHHHHHhccCC
Confidence            99999999999987532     258899999999999999999 44532211       111245788888887754 45


Q ss_pred             ceEEEEEeCCC-Ch-hhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceeccCC---CCCCccCC
Q psy11399        588 LQLVVVVLPGK-TP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPS---IRPKVFNE  662 (865)
Q Consensus       588 ~~lvlvIlp~~-~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l~~~---~~~~l~~~  662 (865)
                      ++|+|||||++ +. +|+.||++||.+.||+||||...+   .++|+++||+||||+||||+||.+...   ..+++...
T Consensus       551 ~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~  627 (900)
T PLN03202        551 PQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKV  627 (900)
T ss_pred             CeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCC
Confidence            89999999974 43 899999999999999999996543   478999999999999999999987532   24556678


Q ss_pred             CeEEEeeeecCCCCCCCCCCeEEEEeeccC-CCCCeeeEEEEEccChhHHHHHH---------HHHH-------------
Q psy11399        663 PVIFMGADVTHPPAGDNKKPSIAAVVGSMD-AHPSRYAATVRVQQHRQEIIQEL---------SSMV-------------  719 (865)
Q Consensus       663 ~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d-~~~~~y~~~~~~Q~~~~Eii~~l---------~~mv-------------  719 (865)
                      +|||||+||+||++++...|||||||||+| .++++|.+.+++|.+++|+|++|         .+|+             
T Consensus       628 ~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~  707 (900)
T PLN03202        628 PTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGK  707 (900)
T ss_pred             CeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCC
Confidence            999999999999988655799999999999 57999999999999999999875         3443             


Q ss_pred             -------------------------------------------------------HhhcccccccCCCCCCCCCcceecc
Q psy11399        720 -------------------------------------------------------RLFCADKKEQSGKSGNIPAGTTVDI  744 (865)
Q Consensus       720 -------------------------------------------------------Rff~~~~~~~~~~~~N~~pGTvVD~  744 (865)
                                                                             |||+.      ++.+||+||||||+
T Consensus       708 ~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~------~~~~N~~pGTvVD~  781 (900)
T PLN03202        708 RKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQA------GSPDNVPPGTVVDN  781 (900)
T ss_pred             CCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeecc------CCCCCCCCceEecc
Confidence                                                                   78864      35699999999999


Q ss_pred             cccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhh
Q psy11399        745 GITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV  824 (865)
Q Consensus       745 ~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~  824 (865)
                      +||||..||||||||.++|||||||||+|||||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||.
T Consensus       782 ~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~  861 (900)
T PLN03202        782 KICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMK  861 (900)
T ss_pred             ccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             ccccCCCCCccccCCCCCCChhhhhhhccccccCcCCeeeC
Q psy11399        825 EKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA  865 (865)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~m~~~  865 (865)
                      .  .+++.++++++++.+....+......||++++++|||+
T Consensus       862 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        862 F--EDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             c--cCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence            2  22222222222222222333445678999999999996

>KOG1041|consensus Back     alignment and domain information
>KOG1042|consensus Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query865
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 0.0
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 2e-60
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 0.0
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 2e-60
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 3e-93
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 2e-70
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 3e-68
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 2e-61
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 4e-59
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 8e-19
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 6e-18
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 1e-16
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 2e-15
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 6e-15
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 9e-15
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-14
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-13
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 5e-09
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 1e-08
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 2e-06
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 3e-06
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 4e-05
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/643 (72%), Positives = 534/643 (83%), Gaps = 19/643 (2%)
Query: 79  FNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMV-HA 137
           F  P RP+ G  GR I L+AN F++ +P+  ++HYE+ I+P+KCPR+VNREI+E MV H 
Sbjct: 23  FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHF 82
Query: 138 YSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFA 197
            ++IFG  KPVFDGR NLYT  PLPIG D++ELEVTLPGEGKDR+F+V+IKW + VSL A
Sbjct: 83  KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQA 142
Query: 198 LEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGF 257
           L +AL GR   +PF+ I ALDVVMRHLPSM YTPVGRSFF+  +G  +PLGGGREVWFGF
Sbjct: 143 LHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGF 202
Query: 258 HQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEI 317
           HQSVRPS WKMMLNIDVSATAFYK+QPVIEF+CEVLD + + EQ+KPLTDSQRVKFTKEI
Sbjct: 203 HQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEI 262
Query: 318 KGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRF 377
           KGLK+EITHCG MKRKYRVCNVTRRPA  Q+FPLQ E+GQTVECTVA+YF D++K+ LR+
Sbjct: 263 KGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRY 322
Query: 378 PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSL 437
           PHLPCLQVGQE KHTYLPLEVCNIVAGQRCIKKLTD QTSTMI+ATARSAPDR+ EI  L
Sbjct: 323 PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 382
Query: 438 VKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFAS 497
           ++ ADFN D YV EFG+ + + M +V GRVL PP + YGGR  +I               
Sbjct: 383 MRSADFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAI--------------- 427
Query: 498 KQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMP 557
              A P  GVWDMR KQF+TG+EI+VWAIACFAPQR   E  L+SFT+QL+KIS DAGMP
Sbjct: 428 ---ATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMP 484
Query: 558 IIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMAT 617
           I GQPCFCKYA G D VEPMFR+LK+T+  LQLVVV+LPGKTPVYAEVKRVGDTVLGMAT
Sbjct: 485 IQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMAT 544
Query: 618 QCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAG 677
           QCVQ KNV +T+PQTLSNLCLKINVKLGG+N+IL+P  RP VF +PVIF+GADVTHPPAG
Sbjct: 545 QCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAG 604
Query: 678 DNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
           D KKPSIAAVVGSMDAHP+RY ATVRVQQHRQEIIQ+L++MVR
Sbjct: 605 DGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVR 647
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query865
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-63
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-160
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 2e-51
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 1e-101
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-96
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 7e-95
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 3e-60
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 2e-57
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 2e-55
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 5e-48
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 7e-48
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 2e-47
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 4e-45
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 5e-41
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 3e-40
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 2e-38
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 6e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 7e-12
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 5e-10
3qir_A148 PIWI-like protein 2; structural genomics consortiu 5e-08
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 7e-04
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  701 bits (1811), Expect = 0.0
 Identities = 469/684 (68%), Positives = 546/684 (79%), Gaps = 24/684 (3%)

Query: 50  GAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRPNLGREGRPIVLRANHFQISMPRGF 109
           GA+ +  G     P   PP P  P +   F  P RP+ G  GR I L+AN F++ +P+  
Sbjct: 1   GAMYSGAG-----PALAPPAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKID 55

Query: 110 VHHYEIQIQPDKCPRKVNREIIETMVHAY-SKIFGALKPVFDGRNNLYTRDPLPIGNDRM 168
           ++HYE+ I+P+KCPR+VNREI+E MV  + ++IFG  KPVFDGR NLYT  PLPIG D++
Sbjct: 56  IYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKV 115

Query: 169 ELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMT 228
           ELEVTLPGEGKDR+F+V+IKW + VSL AL +AL GR   +PF+ I ALDVVMRHLPSM 
Sbjct: 116 ELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 175

Query: 229 YTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEF 288
           YTPVGRSFF+  +G  +PLGGGREVWFGFHQSVRPS WKMMLNIDVSATAFYK+QPVIEF
Sbjct: 176 YTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEF 235

Query: 289 MCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQS 348
           +CEVLD + + EQ+KPLTDSQRVKFTKEIKGLK+EITHCG MKRKYRVCNVTRRPA  Q+
Sbjct: 236 VCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQT 295

Query: 349 FPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCI 408
           FPLQ E+GQTVECTVA+YF D++K+ LR+PHLPCLQVGQE KHTYLPLEVCNIVAGQRCI
Sbjct: 296 FPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCI 355

Query: 409 KKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVL 468
           KKLTD QTSTMI+ATARSAPDR+ EI  L++ A FN D YV EFG+ + + M +V GRVL
Sbjct: 356 KKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVL 415

Query: 469 PPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIAC 528
            PP + YGGR                  +K  A P  GVWDMR KQF+TG+EI+VWAIAC
Sbjct: 416 QPPSILYGGR------------------NKAIATPVQGVWDMRNKQFHTGIEIKVWAIAC 457

Query: 529 FAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQAL 588
           FAPQR   E  L+SFT+QL+KIS DAGMPI GQPCFCKYA G D VEPMFR+LK+T+  L
Sbjct: 458 FAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGL 517

Query: 589 QLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGIN 648
           QLVVV+LPGKTPVYAEVKRVGDTVLGMATQCVQ KNV +T+PQTLSNLCLKINVKLGG+N
Sbjct: 518 QLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 577

Query: 649 SILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHR 708
           +IL+P  RP VF +PVIF+GADVTHPPAGD KKPSIAAVVGSMDAHP+RY ATVRVQQHR
Sbjct: 578 NILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHR 637

Query: 709 QEIIQELSSMVRLFCADKKEQSGK 732
           QEIIQ+L++MVR       + +  
Sbjct: 638 QEIIQDLAAMVRELLIQFYKSTRF 661
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query865
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.94
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.94
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.93
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.92
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.91
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.89
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.88
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.83
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.78
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.77
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 98.28
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=2.3e-163  Score=1484.29  Aligned_cols=772  Identities=75%  Similarity=1.234  Sum_probs=678.6

Q ss_pred             CCCCCCCCCCCCCCCCCeeEEEeeEEEeecCceeEEEEEEEEccCCCChhhHHHHHHHHHHHHh-hhcCCCceEEeCCce
Q psy11399         76 LPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYS-KIFGALKPVFDGRNN  154 (865)
Q Consensus        76 ~~~~~~p~RP~~Gt~G~~i~L~tN~f~l~~p~~~iy~YdV~i~p~~~~~~~~r~i~~~l~~~~~-~~f~~~~~vyDG~~~  154 (865)
                      ...+.+|+|||+||.|++|.|+||||+|++++..+|||||+|+|+..+++++|+++++++++++ +.|++..+||||+++
T Consensus        22 ~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~  101 (861)
T 4f3t_A           22 GYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKN  101 (861)
T ss_dssp             ---CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSE
T ss_pred             cccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcce
Confidence            4578899999999999999999999999998888999999999999889999999999988873 668876679999999


Q ss_pred             EEecCCCCCCCCceEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcCCCCccccccc
Q psy11399        155 LYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGR  234 (865)
Q Consensus       155 LyS~~~L~~~~~~~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~Gr  234 (865)
                      |||+.+|++++++.++.+.++++++++.|+|+|++++++++++|.+|+.|+..+.+.++||+||||||+.+++++..+||
T Consensus       102 l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~vGR  181 (861)
T 4f3t_A          102 LYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGR  181 (861)
T ss_dssp             EEESSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHSEEETT
T ss_pred             EEECCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccccccCC
Confidence            99999999866667777777766677899999999999999999999999988888999999999999988888999999


Q ss_pred             cccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHH
Q psy11399        235 SFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFT  314 (865)
Q Consensus       235 ~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~  314 (865)
                      +||+++.+..+++++|+|+|+||++|||+++++++||+|+++++|++++||+|+|+++++.++.....+++.++++.++.
T Consensus       182 ~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (861)
T 4f3t_A          182 SFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT  261 (861)
T ss_dssp             EEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHH
T ss_pred             CccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHH
Confidence            99998766667889999999999999999999999999999999999999999999998766544444567788999999


Q ss_pred             hHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCccccc
Q psy11399        315 KEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYL  394 (865)
Q Consensus       315 ~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~yl  394 (865)
                      ++|+|++|+++|+++.+|+|+|.+|++.+++..+|.++.++|++.+|||+|||+++||++|+||+||||++|++.+++||
T Consensus       262 k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~yl  341 (861)
T 4f3t_A          262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYL  341 (861)
T ss_dssp             HHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEEE
T ss_pred             HHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCccc
Confidence            99999999999987656999999999999999999766667876789999999999999999999999999988889999


Q ss_pred             ccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCCCcee
Q psy11399        395 PLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQ  474 (865)
Q Consensus       395 P~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~  474 (865)
                      |||||.|+|||+++++|+++|+++|||+++..|++|.+.|.++++.++++.+++|++|||+|+++|++|+||+|++|+|.
T Consensus       342 P~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~  421 (861)
T 4f3t_A          342 PLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSIL  421 (861)
T ss_dssp             EGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEE
T ss_pred             cceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEE
Confidence            99999999999999999999999999999999999999999999998888889999999999999999999999999999


Q ss_pred             cCCccccccccccccccccccccccccCCCCccccccCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcC
Q psy11399        475 YGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDA  554 (865)
Q Consensus       475 yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~  554 (865)
                      |++++.                  ....|.+|+||+++++|++++++++|+|+++++.+.+.++.++.|++.|.+.|+.+
T Consensus       422 y~~~~~------------------~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~  483 (861)
T 4f3t_A          422 YGGRNK------------------AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDA  483 (861)
T ss_dssp             CCSSSC------------------CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCcc------------------cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhC
Confidence            997532                  12457789999999999999999999999987665556788999999999999999


Q ss_pred             CCcccCCCceeeccCCCCCHHHHHHHHHhhcCCceEEEEEeCCCChhhHHHHHhhhhccCceeEeeeccccccCChhhHh
Q psy11399        555 GMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLS  634 (865)
Q Consensus       555 G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~~~~~lvlvIlp~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~  634 (865)
                      ||++...|.++.+..+.+.++.+++.+++..++++|||||+|++.+.|+.||++||++.||+||||+.+++.|.++|++.
T Consensus       484 G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~  563 (861)
T 4f3t_A          484 GMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS  563 (861)
T ss_dssp             TCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred             CcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence            99996668777665556789999999987667899999999987679999999999999999999999999888899999


Q ss_pred             HHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHHHHH
Q psy11399        635 NLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQE  714 (865)
Q Consensus       635 Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~  714 (865)
                      ||++|||+||||+||.+.+...+.++..+|||||+||+||++++...|||+|||||+|+++++|.+.+++|.+++|+|++
T Consensus       564 ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~  643 (861)
T 4f3t_A          564 NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQD  643 (861)
T ss_dssp             HHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTT
T ss_pred             HHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHH
Confidence            99999999999999999876666777899999999999999886678999999999999999999999999999999998


Q ss_pred             HHHHH-------------------------------------------------------------------Hhhccccc
Q psy11399        715 LSSMV-------------------------------------------------------------------RLFCADKK  727 (865)
Q Consensus       715 l~~mv-------------------------------------------------------------------Rff~~~~~  727 (865)
                      |++|+                                                                   |||+.+.+
T Consensus       644 l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~  723 (861)
T 4f3t_A          644 LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN  723 (861)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGG
T ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCc
Confidence            87776                                                                   99998765


Q ss_pred             ccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCch
Q psy11399        728 EQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPA  807 (865)
Q Consensus       728 ~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPa  807 (865)
                      +..++.+|++||||||++||||.+|||||+||.++|||||||||+|||||+++++|+||+|||+|||+|+|||++|||||
T Consensus       724 ~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpa  803 (861)
T 4f3t_A          724 ERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA  803 (861)
T ss_dssp             GCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCH
T ss_pred             ccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCch
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCccccCCCCCCChhhhhhhccccccCcCCeeeC
Q psy11399        808 PAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA  865 (865)
Q Consensus       808 P~yyA~~~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~m~~~  865 (865)
                      ||||||++|+|||+||.+.++++++||+.||+++.+++++++++.+||++++++|||+
T Consensus       804 P~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~  861 (861)
T 4f3t_A          804 PAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA  861 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred             HHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence            9999999999999999998888888887777666666777788889999999999996
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 865
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 5e-79
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 5e-66
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-52
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-50
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-38
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 1e-05
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  259 bits (662), Expect = 5e-79
 Identities = 42/391 (10%), Positives = 102/391 (26%), Gaps = 79/391 (20%)

Query: 507 VWDMRGKQFYTGVEIRVWAIACFAPQRT--------------VREDSLRSFTQQLQKISN 552
           V D +GK       +R +   C    +                 E     F ++L     
Sbjct: 8   VLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLK 67

Query: 553 DAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTP--------VYAE 604
           + G+ +  +      A   ++ +     + +  + + LV+V L             +Y  
Sbjct: 68  NKGIKLKIKGKSLILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDF 127

Query: 605 VKRVGDTVLGMATQCVQAKNV-NKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEP 663
           VKR       + +Q +  + + N+     L N+  ++  K G I   L            
Sbjct: 128 VKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEIEGK-----V 181

Query: 664 VIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSM----- 718
             F+G D++          ++A                       +++ ++         
Sbjct: 182 DAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLL 241

Query: 719 --------------------------VRLFCAD----------KKEQSGK---SGNIPAG 739
                                      + +              K  + +   +     G
Sbjct: 242 EKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKG 301

Query: 740 TTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRC 799
                      +       +Q  +GT +P     ++ +     + L      L       
Sbjct: 302 YFY----KLSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSS 355

Query: 800 TRSVSIPAPAYYAHLVAFRARYHLVEKEHDS 830
            + + +PA  +Y+  +       +   + + 
Sbjct: 356 FQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query865
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.97
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.94
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.9
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=6.7e-47  Score=420.81  Aligned_cols=281  Identities=14%  Similarity=0.134  Sum_probs=215.9

Q ss_pred             ccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhcCCceEEEEEeCCCC
Q psy11399        520 EIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKT  599 (865)
Q Consensus       520 ~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~~~~~lvlvIlp~~~  599 (865)
                      .+-+|.++.+.-.+. .+..+++|+++|.+.|+..||++..+|..+.+.....+.+..+....+...++++++||+|++.
T Consensus        36 ~~~~~~~i~~~~~~~-~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~  114 (392)
T d1yvua2          36 DVLSVEIISVSVYKK-LEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYP  114 (392)
T ss_dssp             SEEEEEEEEEEC------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTTSSCSEEEEEEC---
T ss_pred             ccccceEEEEEEeeh-hhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhccCCCEEEEEEcCCC
Confidence            344677666443332 3557799999999999999999965565555544333444444333344457899999998643


Q ss_pred             --------hhhHHHHHhhhhccCceeEeeeccccccCChh-hHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeee
Q psy11399        600 --------PVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQ-TLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGAD  670 (865)
Q Consensus       600 --------~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q-~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~D  670 (865)
                              ++|+.||++| .+.||+||||..+|+.+.+.+ ++.||++|||+||||+||.+.+.     ...+|||||+|
T Consensus       115 ~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~~~~tmiIGiD  188 (392)
T d1yvua2         115 KVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----EGKVDAFVGID  188 (392)
T ss_dssp             -------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----TTCCSEEEEEC
T ss_pred             CcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----CCCCeEEEEEE
Confidence                    3799999987 789999999999999876655 57899999999999999998542     23679999999


Q ss_pred             ecCCCCCCCCCCeEEEEeeccCCCC-CeeeEEEEEccChhHHHHHHHH-HH-----------------------------
Q psy11399        671 VTHPPAGDNKKPSIAAVVGSMDAHP-SRYAATVRVQQHRQEIIQELSS-MV-----------------------------  719 (865)
Q Consensus       671 V~Hp~~~~~~~pSi~avVaS~d~~~-~~y~~~~~~Q~~~~Eii~~l~~-mv-----------------------------  719 (865)
                      |+|++++. ..++++|++++.|... ..+......|..++|++.++.. ++                             
T Consensus       189 v~h~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~~~~El~~  267 (392)
T d1yvua2         189 ISRITRDG-KTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRDEVAA  267 (392)
T ss_dssp             EEECCCSS-SCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCCHHHHHH
T ss_pred             EEecCCCC-CcccEEEEEEEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcHHHHHH
Confidence            99998765 3456677666666543 4555666778888887766432 22                             


Q ss_pred             -----------------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEcc
Q psy11399        720 -----------------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWD  776 (865)
Q Consensus       720 -----------------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d  776 (865)
                                             |||+.         +|+++||+|+    .+...+||++||.+.|||+||+||+|+||
T Consensus       268 i~~a~~~~~pki~~IvV~Krh~~Rff~~---------~~~~~Gt~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d  334 (392)
T d1yvua2         268 FKKYGELYGYSLELLEIIKRNNPRFFSN---------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYG  334 (392)
T ss_dssp             HHHHHHHHTCEEEEEEEECSSCCCEECS---------CSCCTTEEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEEC
T ss_pred             HHHHHHhcCCcEEEEEEEecCCeeecCC---------CCCCCCCEEe----CCCCeEEEEEcCCcCCCCCCCcEEEEECC
Confidence                                   66652         4677899874    56788999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhh
Q psy11399        777 DNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL  823 (865)
Q Consensus       777 ~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l  823 (865)
                      |+  +.|+||++||+|||+|+||+++||+|+|+||||++|+|+|.++
T Consensus       335 ~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~  379 (392)
T d1yvua2         335 EL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGI  379 (392)
T ss_dssp             SS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCS
T ss_pred             CC--CHHHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHHhhcC
Confidence            86  4699999999999999999999999999999999999999876
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure