Psyllid ID: psy11405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccEEEEccEEEccccccEEEEEEccccEEEEEEEEcccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEccEEEEcccEEcccccccEEEEEEccccEEEEEEEEcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mpsggalfgstvsrsqsknlvefkagkmtmkgkmvhpdkrkglvyvhqsddslmhfcwkdrqsgsvVEVVWWSTLW
Flexible Loop (DISEMBL)
mpsggalfgstvsrsqsknlvefkagkmtmkgkmvhpdkRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Low Complexity Region (SEG)
MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Disordered region (IsUnstruct)
****************************************KGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTL*
Disordered Region (DISOPRED)
*********************EFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Disordered Region (DISEMBL)
************SRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Disordered Region (DISPRO)
****************SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q6GN67	404	Proteasomal ubiquitin rec	N/A	N/A	0.842	0.158	0.716	6e-20
Q6P877	404	Proteasomal ubiquitin rec	yes	N/A	0.842	0.158	0.716	8e-20
Q7ZXD6	404	Proteasomal ubiquitin rec	N/A	N/A	0.842	0.158	0.716	9e-20
Q9JKV1	407	Proteasomal ubiquitin rec	yes	N/A	0.868	0.162	0.666	1e-19
A1L5A6	407	Proteasomal ubiquitin rec	yes	N/A	0.868	0.162	0.666	2e-19
Q9JMB5	407	Proteasomal ubiquitin rec	yes	N/A	0.868	0.162	0.666	2e-19
Q16186	407	Proteasomal ubiquitin rec	yes	N/A	0.868	0.162	0.637	2e-19
Q98SH3	406	Proteasomal ubiquitin rec	yes	N/A	0.868	0.162	0.681	3e-19
Q6NZ09	410	Proteasomal ubiquitin rec	yes	N/A	0.842	0.156	0.656	2e-17
Q7K2G1	389	Proteasomal ubiquitin rec	no	N/A	0.605	0.118	0.782	2e-16

>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)

Query: 3  SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2  SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query: 60 DRQSGSV 66
          DR SGSV
Sbjct: 62 DRTSGSV 68

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome (By similarity). Required during gastrulation.
Xenopus laevis (taxid: 8355)

>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)

Query: 3  SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2  SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query: 60 DRQSGSV 66
          DR SGSV
Sbjct: 62 DRTSGSV 68

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)

Query: 3  SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2  SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query: 60 DRQSGSV 66
          DR SGSV
Sbjct: 62 DRTSGSV 68

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 1  MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1  MTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 61 WKDRTSGTV 69

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Mus musculus (taxid: 10090)

>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 1  MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1  MTTSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 61 WKDRTSGNV 69

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Bos taurus (taxid: 9913)

>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 1  MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1  MTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 61 WKDRTSGTV 69

Functions as a proteasomal ubiquitin receptor. Recruits and activates the deubiquitinating enzyme UCHL5 at the 26S proteasome.

Rattus norvegicus (taxid: 10116)

>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 3/69 (4%)

Query: 1  MPSGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  S+   +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1  MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 61 WKDRTSGNV 69

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Homo sapiens (taxid: 9606)

>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 1  MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1  MTTSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFC 60

Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 61 WKDRTSGNV 69

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Gallus gallus (taxid: 9031)

>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/67 (65%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 3  SGGALF---GSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          S GALF    S    S SK LVEF+AGKMT+KG  V PDKRKG VY+ Q+DDSL+HFCWK
Sbjct: 2  SSGALFPSLVSGSRSSSSKYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWK 61

Query: 60 DRQSGSV 66
          DR SG+V
Sbjct: 62 DRTSGNV 68

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Danio rerio (taxid: 7955)

>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=CG13349 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 39/46 (84%)

Query: 21 VEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSV 66
          VEF+AG+M M GKMVHPD RKGLVY+ QSDD LMHFCWKDR SG V
Sbjct: 18 VEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKV 63

May function as a proteasomal ubiquitin receptor. May promote the deubiquitinating activity associated with the 26S proteasome.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242005905	355	Adhesion-regulating molecule 1 precursor	0.881	0.188	0.838	5e-27
405960587	391	Proteasomal ubiquitin receptor ADRM1 [Cr	0.828	0.161	0.812	7e-24
193683329	398	PREDICTED: proteasomal ubiquitin recepto	0.868	0.165	0.757	8e-24
328792922	399	PREDICTED: proteasomal ubiquitin recepto	0.842	0.160	0.812	3e-23
350426676	407	PREDICTED: proteasomal ubiquitin recepto	0.842	0.157	0.796	9e-23
340723548	407	PREDICTED: LOW QUALITY PROTEIN: proteaso	0.842	0.157	0.796	9e-23
380022472	398	PREDICTED: LOW QUALITY PROTEIN: proteaso	0.842	0.160	0.796	1e-22
307209003	398	Protein ADRM1-like protein [Harpegnathos	0.855	0.163	0.787	2e-22
307169519	393	Protein ADRM1 [Camponotus floridanus]	0.855	0.165	0.772	3e-22
443692839	392	hypothetical protein CAPTEDRAFT_18438 [C	0.868	0.168	0.742	4e-22

>gi|242005905|ref|XP_002423800.1| Adhesion-regulating molecule 1 precursor, putative [Pediculus humanus corporis] gi|212507016|gb|EEB11062.1| Adhesion-regulating molecule 1 precursor, putative [Pediculus humanus corporis]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 64/68 (94%), Gaps = 1/68 (1%)

Query: 1  MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKD 60
          MPS GALFG+T +RSQ+KNLVEFKAGKMTMKGKMVHPDKRKGL+YV+QS+DSLMHFCWKD
Sbjct: 1  MPSSGALFGNTATRSQNKNLVEFKAGKMTMKGKMVHPDKRKGLLYVYQSEDSLMHFCWKD 60

Query: 61 RQSGSVVE 68
          R +G VVE
Sbjct: 61 RVTG-VVE 67

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405960587|gb|EKC26500.1| Proteasomal ubiquitin receptor ADRM1 [Crassostrea gigas]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          + GALFGST  RSQSKNLVEF+AGKM MKGKMVHPDKRKG+VYV+QSDD+LMHFCWKDR 
Sbjct: 2  ASGALFGST-GRSQSKNLVEFRAGKMFMKGKMVHPDKRKGMVYVYQSDDALMHFCWKDRT 60

Query: 63 SGSV 66
          +G+V
Sbjct: 61 NGTV 64

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|193683329|ref|XP_001949000.1| PREDICTED: proteasomal ubiquitin receptor ADRM1 homolog [Acyrthosiphon pisum]

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/66 (75%), Positives = 57/66 (86%)

Query: 1  MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKD 60
          M    ALFG+T  R+QSKNLVEFKAGKM M+GKMV+PDKRKGL+Y+HQSDDSL+HFCWKD
Sbjct: 1  MSGATALFGNTAGRNQSKNLVEFKAGKMNMRGKMVYPDKRKGLLYIHQSDDSLIHFCWKD 60

Query: 61 RQSGSV 66
          R SG V
Sbjct: 61 RSSGVV 66

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792922|ref|XP_396744.4| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Apis mellifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 56/64 (87%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          SGGALFG+  SRS  KNLVEFKAGKMTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SGGALFGNNASRSTPKNLVEFKAGKMTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRV 61

Query: 63 SGSV 66
          SG V
Sbjct: 62 SGYV 65

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426676|ref|XP_003494509.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Bombus impatiens]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          SGGALFG+  SR   KNLVEFKAGKMTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SGGALFGNNASRGTPKNLVEFKAGKMTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRV 61

Query: 63 SGSV 66
          SG V
Sbjct: 62 SGYV 65

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723548|ref|XP_003400151.1| PREDICTED: LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1-like [Bombus terrestris]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          SGGALFG+  SR   KNLVEFKAGKMTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SGGALFGNNASRGTPKNLVEFKAGKMTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRV 61

Query: 63 SGSV 66
          SG V
Sbjct: 62 SGYV 65

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022472|ref|XP_003695069.1| PREDICTED: LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1-like [Apis florea]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          SGGALFG+  SRS  KNLVEFKAGKMTMKG MV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SGGALFGNNASRSTPKNLVEFKAGKMTMKGXMVYPDIRKGQLYVYQSDDSLMHFCWKDRV 61

Query: 63 SGSV 66
          SG V
Sbjct: 62 SGYV 65

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209003|gb|EFN86203.1| Protein ADRM1-like protein [Harpegnathos saltator]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 57/66 (86%), Gaps = 1/66 (1%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          S GALFG+T SR  SKNLVEFKAGKMTMK KMV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SSGALFGNTASRGASKNLVEFKAGKMTMKDKMVYPDTRKGQLYVYQSDDSLMHFCWKDRT 61

Query: 63 SGSVVE 68
          +G VVE
Sbjct: 62 TG-VVE 66

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169519|gb|EFN62161.1| Protein ADRM1 [Camponotus floridanus]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 57/66 (86%), Gaps = 1/66 (1%)

Query: 3  SGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62
          S GALFG+  SR  SKNLVEFKAGKMT+KGKMV+PD RKG +YV+QSDDSLMHFCWKDR 
Sbjct: 2  SSGALFGNNASRGASKNLVEFKAGKMTVKGKMVYPDTRKGQLYVYQSDDSLMHFCWKDRT 61

Query: 63 SGSVVE 68
          +G VVE
Sbjct: 62 TG-VVE 66

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443692839|gb|ELT94344.1| hypothetical protein CAPTEDRAFT_18438 [Capitella teleta]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%)

Query: 1  MPSGGALFGSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKD 60
          M S GALFG+  SRSQSKNLVEF+AGKM MKG MVHPD RKGLVY++QSDD+L HF WKD
Sbjct: 1  MSSSGALFGNAGSRSQSKNLVEFRAGKMYMKGNMVHPDTRKGLVYIYQSDDALTHFVWKD 60

Query: 61 RQSGSV 66
          R  G+V
Sbjct: 61 RSKGTV 66

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
UNIPROTKB|Q6P877	404	adrm1 "Proteasomal ubiquitin r	0.842	0.158	0.716	6.6e-19
UNIPROTKB|Q7ZXD6	404	adrm1-b "Proteasomal ubiquitin	0.842	0.158	0.716	6.6e-19
UNIPROTKB|A8YXY1	177	ADRM1 "ADRM1 protein" [Bos tau	0.868	0.372	0.666	1.1e-18
UNIPROTKB|Q98SH3	406	ADRM1 "Proteasomal ubiquitin r	0.868	0.162	0.681	1.1e-18
UNIPROTKB|F1P4I9	405	ADRM1 "Proteasomal ubiquitin r	0.842	0.158	0.701	1.5e-18
UNIPROTKB|F1NEQ9	409	ADRM1 "Proteasomal ubiquitin r	0.842	0.156	0.701	1.5e-18
ZFIN|ZDB-GENE-040426-905	479	adrm1 "adhesion regulating mol	0.842	0.133	0.686	2.6e-18
UNIPROTKB|E2RDP4	406	ADRM1 "Uncharacterized protein	0.868	0.162	0.666	3.2e-18
UNIPROTKB|A1L5A6	407	ADRM1 "Proteasomal ubiquitin r	0.868	0.162	0.666	3.2e-18
MGI|MGI:1929289	407	Adrm1 "adhesion regulating mol	0.868	0.162	0.666	3.2e-18

UNIPROTKB|Q6P877 adrm1 "Proteasomal ubiquitin receptor ADRM1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 231 (86.4 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 48/67 (71%), Positives = 54/67 (80%)

Query:     3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
             S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct:     2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query:    60 DRQSGSV 66
             DR SGSV
Sbjct:    62 DRTSGSV 68

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|Q7ZXD6 adrm1-b "Proteasomal ubiquitin receptor ADRM1-B" [Xenopus laevis (taxid:8355)]

 Score = 231 (86.4 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 48/67 (71%), Positives = 54/67 (80%)

Query:     3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
             S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct:     2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query:    60 DRQSGSV 66
             DR SGSV
Sbjct:    62 DRTSGSV 68

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|A8YXY1 ADRM1 "ADRM1 protein" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query:     1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
             M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct:     1 MTTSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query:    58 WKDRQSGSV 66
             WKDR SG+V
Sbjct:    61 WKDRTSGNV 69

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q98SH3 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/69 (68%), Positives = 55/69 (79%)

Query:     1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
             M + GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct:     1 MTTSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFC 60

Query:    58 WKDRQSGSV 66
             WKDR SG+V
Sbjct:    61 WKDRTSGNV 69

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|F1P4I9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 47/67 (70%), Positives = 54/67 (80%)

Query:     3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
             S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct:     2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61

Query:    60 DRQSGSV 66
             DR SG+V
Sbjct:    62 DRTSGNV 68

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|F1NEQ9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 47/67 (70%), Positives = 54/67 (80%)

Query:     3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
             S GALF S V  SR S SK LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct:     6 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 65

Query:    60 DRQSGSV 66
             DR SG+V
Sbjct:    66 DRTSGNV 72

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

ZFIN|ZDB-GENE-040426-905 adrm1 "adhesion regulating molecule 1" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 46/67 (68%), Positives = 53/67 (79%)

Query:     3 SGGALFGSTVSRSQS---KNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
             S GALF S VS S+S   K LVEF+AGKMT+KG  V PDKRKG VY+ Q+DDSL+HFCWK
Sbjct:    71 SSGALFPSLVSGSRSSSSKYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWK 130

Query:    60 DRQSGSV 66
             DR SG+V
Sbjct:   131 DRTSGNV 137

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA;ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

UNIPROTKB|E2RDP4 ADRM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query:     1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
             M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct:     1 MTTSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query:    58 WKDRQSGSV 66
             WKDR SG+V
Sbjct:    61 WKDRTSGNV 69

GO:0070628 "proteasome binding" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|A1L5A6 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query:     1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
             M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct:     1 MTTSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query:    58 WKDRQSGSV 66
             WKDR SG+V
Sbjct:    61 WKDRTSGNV 69

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

MGI|MGI:1929289 Adrm1 "adhesion regulating molecule 1" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query:     1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
             M + GALF S V  SR S +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct:     1 MTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60

Query:    58 WKDRQSGSV 66
             WKDR SG+V
Sbjct:    61 WKDRTSGTV 69

GO:0000502 "proteasome complex" evidence=ISO

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0007286 "spermatid development" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IMP

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=IMP

GO:0043248 "proteasome assembly" evidence=ISO

GO:0048477 "oogenesis" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0060009 "Sertoli cell development" evidence=IMP

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=IMP

GO:0060612 "adipose tissue development" evidence=IMP

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1L5A6	ADRM1_BOVIN	No assigned EC number	0.6666	0.8684	0.1621	yes	N/A
Q9JMB5	ADRM1_RAT	No assigned EC number	0.6666	0.8684	0.1621	yes	N/A
Q6NZ09	ADRM1_DANRE	No assigned EC number	0.6567	0.8421	0.1560	yes	N/A
Q16186	ADRM1_HUMAN	No assigned EC number	0.6376	0.8684	0.1621	yes	N/A
Q9JKV1	ADRM1_MOUSE	No assigned EC number	0.6666	0.8684	0.1621	yes	N/A
Q98SH3	ADRM1_CHICK	No assigned EC number	0.6811	0.8684	0.1625	yes	N/A
Q6P877	ADRM1_XENTR	No assigned EC number	0.7164	0.8421	0.1584	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
cd13314	105	cd13314, PH_Rpn13, Regulatory Particle Non-ATPase	4e-27
pfam04683	84	pfam04683, Proteasom_Rpn13, Proteasome complex sub	1e-16

>gnl|CDD|241468 cd13314, PH_Rpn13, Regulatory Particle Non-ATPase 13 Pleckstrin homology-like domain

 Score = 94.3 bits (235), Expect = 4e-27
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query: 21 VEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVE 68
          VEFKAGKMT+KG  V PD RKGLVY++Q DD L+HFCWKDR +G+V +
Sbjct: 1  VEFKAGKMTLKGTTVTPDPRKGLVYLYQGDDGLIHFCWKDRTTGAVED 48

Targeted protein degradation is performed to a great extent by the ubiquitin-proteasome pathway, in which substrate proteins are marked by covalently attached ubiquitin chains that mediate recognition by the proteasome. Rpn13(also called ADRM1/ARM1) is one of the two major ubiquitin receptors of the proteasome, the other being S5a/Rpn10 which is not essential for ubiquitin-mediated protein degradation in budding yeast2. S5a has two ubiquitin interacting motifs (UIMs) that bind simultaneously to ubiquitin moieties to increase affinity while Rpn13 binds ubiquitin with a single, high affinity surface within its N-terminal PH domain. Rpn13 also binds and activates deubiquitinating enzyme Uch37, one of the proteasome's three deubiquitinating enzymes. Recently it was discovered that the ubiquitin-binding domain (BD) and Uch37 BD of human (h) Rpn13 pack against each other when it is not incorporated into the proteasome reducing hRpn13's affinity for ubiquitin. However when hRpn13 binds to hRpn2/S1 this abrogates its interdomain interactions, thus activating hRpn13 for ubiquitin binding. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|218211 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13 ubiquitin receptor

 Score = 66.5 bits (163), Expect = 1e-16
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 26 GKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVE 68
          GKM + GK V PD RKGL+Y+++SDD L+HF WK R +G V +
Sbjct: 1  GKMNLDGKTVTPDPRKGLLYLYKSDDGLLHFQWKPRDTGEVED 43

This family was thought originally to be involved in cell-adhesion, but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG3037|consensus	330		99.91
PF04683	85	Proteasom_Rpn13: Proteasome complex subunit Rpn13	99.83

>KOG3037|consensus

Probab=99.91  E-value=4.6e-25  Score=167.67  Aligned_cols=61  Identities=59%  Similarity=1.022  Sum_probs=57.0

Q ss_pred             ccCCCcceeEEEeceeeEEcC--CEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEE
Q psy11405         12 VSRSQSKNLVEFKAGKMTMKG--KMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWW   72 (76)
Q Consensus        12 ~~~~~~~~lieFkAGK~~~~g--~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~   72 (76)
                      ++.+++..|||||||||.+.|  ++|+||+|||+|||.+++|||+||||++|++++||||+|-
T Consensus         4 ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIi   66 (330)
T KOG3037|consen    4 SSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIV   66 (330)
T ss_pred             ccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEE
Confidence            345788899999999999999  8999999999999999999999999999999999999874

>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor

Probab=99.83  E-value=2.4e-20  Score=118.41  Aligned_cols=47  Identities=51%  Similarity=1.036  Sum_probs=40.6

Q ss_pred             eeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCC-CCeeeeEEE
Q psy11405         26 GKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQS-GSVVEVVWW   72 (76)
Q Consensus        26 GK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t-~~vED~~~~   72 (76)
                      |||+++|++|+||+|||+|+|++++|+|+||||++|++ +.+|||+|.
T Consensus         1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il   48 (85)
T PF04683_consen    1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLIL   48 (85)
T ss_dssp             EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE
T ss_pred             CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceec
Confidence            99999999999999999999999999999999999999 999999886

The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2kr0_A	411	A Proteasome Protein Length = 411		2e-20
2r2y_A	153	Crystal Structure Of The Proteasomal Rpn13 Pru-Doma		3e-19
2z59_A	109	Complex Structures Of Mouse Rpn13 (22-130aa) And Ub		7e-17

>pdb|2KR0|A Chain A, A Proteasome Protein Length = 411

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 1  MPSGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  S+   +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 5  MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 64
Query: 58 WKDRQSGSV 66
          WKDR SG+V
Sbjct: 65 WKDRTSGNV 73

>pdb|2R2Y|A Chain A, Crystal Structure Of The Proteasomal Rpn13 Pru-Domain Length = 153

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 3/67 (4%)
Query: 3  SGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          + GALF S V  S+   +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 6  TSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 65
Query: 60 DRQSGSV 66
          DR SG+V
Sbjct: 66 DRTSGTV 72

>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin Length = 109

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 20 LVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSV 66
          LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V
Sbjct: 2  LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTV 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	4e-26
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	1e-24
2z4d_A	96	26S proteasome regulatory subunit RPN13; PH domain	2e-19

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 97.5 bits (241), Expect = 4e-26
 Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 3/71 (4%)

Query: 1  MPSGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
          M + GALF S V  S+   +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 5  MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 64

Query: 58 WKDRQSGSVVE 68
          WKDR SG+V +
Sbjct: 65 WKDRTSGNVED 75

>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A Length = 153

 Score = 88.6 bits (219), Expect = 1e-24
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 3/69 (4%)

Query: 3  SGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
          + GALF S V  S+   +K LVEF+AGKM++KG  V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 6  TSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 65

Query: 60 DRQSGSVVE 68
          DR SG+V +
Sbjct: 66 DRTSGTVED 74

>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear protein; NMR {Saccharomyces cerevisiae} Length = 96

 Score = 73.8 bits (181), Expect = 2e-19
 Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 19 NLVEFKAGKMTMK--GKMVHPDKRKGLVYVHQSDD---SLMHFCWKDRQSGSVVEVV 70
           +++F+AG        ++  P   +G + +  +++       F W+  +     E+ 
Sbjct: 1  TVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELD 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	99.96
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	99.95
4b4t_X	156	26S proteasome regulatory subunit RPN13; hydrolase	99.86

>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A

Probab=99.96  E-value=6.1e-30  Score=176.85  Aligned_cols=71  Identities=59%  Similarity=0.994  Sum_probs=52.7

Q ss_pred             Ccccccccc---cccCCCcceeEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEE
Q psy11405          2 PSGGALFGS---TVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWW   72 (76)
Q Consensus         2 ~~~~~lF~~---~~~~~~~~~lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~   72 (76)
                      |++|+||++   +..++++++||+||||||.++|++|+||+|||+|||++++|+|+||||++|+++.+|||+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lveFkAGkm~l~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~vEdDlIi   78 (153)
T 2r2y_A            5 TTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLII   78 (153)
T ss_dssp             --------------------CCEEEEEEEEEEETTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEEC
T ss_pred             ccccceeccccCCccccCCceeEEEeCceEEecCCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCccceEEE
Confidence            589999998   24567889999999999999999999999999999999999999999999999999999885

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=99.95  E-value=2.5e-28  Score=188.74  Aligned_cols=73  Identities=58%  Similarity=0.962  Sum_probs=67.7

Q ss_pred             CCccccccccc---ccCCCcceeEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEEe
Q psy11405          1 MPSGGALFGST---VSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWS   73 (76)
Q Consensus         1 ~~~~~~lF~~~---~~~~~~~~lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~~   73 (76)
                      +||+|+||+|.   .+++++++||+||||||.++|++|+||+|||+|||++++|+|+||||++|+++.+|||+|..
T Consensus         5 ~~~~~~~F~~~~~~~~~s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~   80 (411)
T 2kr0_A            5 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIF   80 (411)
T ss_dssp             CCSCSCCCTTSCCCCCSSCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEEC
T ss_pred             cccccccccCCCCCcccCCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEc
Confidence            47899999983   45788899999999999999999999999999999999999999999999999999999863

>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A

Probab=99.86  E-value=1.3e-22  Score=140.25  Aligned_cols=52  Identities=15%  Similarity=0.394  Sum_probs=43.7

Q ss_pred             CcceeEEEeceeeEEcC--CEEEecCCccEEEEEeCCC---CeEEEEEeeCCCCCee
Q psy11405         16 QSKNLVEFKAGKMTMKG--KMVHPDKRKGLVYVHQSDD---SLMHFCWKDRQSGSVV   67 (76)
Q Consensus        16 ~~~~lieFkAGK~~~~g--~~V~Pd~rKG~i~l~~~~D---~l~hf~W~~R~t~~vE   67 (76)
                      ++.+||+||||||.+++  ++|+||+|||+|||++++|   ||+||||++|+++..+
T Consensus         3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~   59 (156)
T 4b4t_X            3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGR   59 (156)
T ss_dssp             ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSC
T ss_pred             CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcC
Confidence            56789999999999986  6899999999999999877   6999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00